Sequence Manipulation Suite:
Fuzzy Search Protein
Fuzzy Search Protein accepts a protein sequence along with a query sequence and returns sites that are identical or similar to the query.

Enter the sequence to search (in raw sequence or FASTA format) into the text area below. Input limit is 2000 characters.

Enter the query sequence into the text area below. Input limit is 30 characters.

Please check the browser compatibility page before using this program.

Use the following parameters to specify how hits are scored, and to control which hits are returned.
  • Scoring matrix
  • Gap penalty
  • Report the the top hits.
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