Pairwise sequence comparison

The following exercises will illustrate several aspects of pairwise sequence comparison:


Reminder: some links for the recovery of sequences

[ Easily fetch sequences ][ Search SWISS-PROT ][ NCBI's Entrez ]



Pairwise alignment with LALIGN

Compare the sequences OPRM_RAT and SSR1_HUMAN (these are the SWISS-PROT IDs) with lalign using default parameters.

The sequences can be fetched here(choose the "FASTA" format) using the SWISS-PROT IDs.
Don't hesitate to look at the complete SWISS-PROT entries (OPRM_RAT and SSR1_HUMAN),in order to get more information about these two proteins !

Try to answer the following questions:

Questions and comments can be sent to Emiliano Barreto H.