SIB BLAST network server version 1.6 of November 26, 2002 compiled by GNU C version 3.2.3 20030502 (Red Hat Linux 3.2.3-49) compiled on Feb 1 2005. Welcome to the SIB BLAST Network Service (noko01) ============================================================================== Swiss Institute of Bioinformatics (SIB) Ludwig Institute for Cancer Research (LICR) Swiss Institute for Experimental Cancer Research (ISREC) ============================================================================== If results of this search are reported or published, please mention that the computation was performed at the SIB using the BLAST network service. PEPTIDE SEQUENCE DATABASES swiss SwissProt + updates 14-Jul-2004 swisstrembl SwissProt+Trembl+TrUpdates 14-Jul-2004 nr Non-redundant SP+Trembl+TrUpdates+gp 14-Jul-2004 shuffled SwissProt r30 shuffled in windows of 20 aa yeast S.cerevisiae translated genome ORFs NUCLEOTIDE SEQUENCE DATABASES embre * EMBL Data Library, Release 79, June 2004 embu * EmblUpdate 14-Jul-2004 embl * EMBL+EmblUpdate 14-Jul-2004 nr * Synonym to embl (and actually redundant). 14-Jul-2004 EST Database of Expressed Sequence Tags 14-Jul-2004 GSS Genome Survey Sequences 14-Jul-2004 HTG High-thruput Genomic Sequences 14-Jul-2004 STS Database of Sequence Tagged Sites 14-Jul-2004 repbase Repbase, August 04, 2002 simple Simple sequence repeats (J. Mol. Evol. 40:120, 1995) yeast S.cerevisiae genome worm C.elegans genome * The est, gss, htg, and sts divisions of EMBL are excluded from these databases. ============================================================================ The BLAST Network Service uses a server developed at SIB and the NCBI BLAST 2 software. For problems regarding this site, please contact one of the following persons: - problems with the programs: Christian Iseli (Christian.Iseli@licr.org) Giovanna Ambrosini (giovanna.ambrosini@isb-sib.ch) - problems with the databases: Victor Jongeneel (Victor.Jongeneel@isb-sib.ch) Laurent Falquet (Laurent.Falquet@isrec.unil.ch) ============================================================================ BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= consensus (55 letters) Database: /export/scratch/database/MYHITS2/sw.69 184,304 sequences; 66,619,967 total letters [blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file [blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sw:Y2R2_DROME Hypothetical 115 kDa protein in type I retrotransp... 31 0.23 sw:PO11_SCICO Retrovirus-related Pol polyprotein from type I ret... 29 0.86 >sw:Y2R2_DROME Hypothetical 115 kDa protein in type I retrotransposable element R1DM (ORF 2). Drosophila melanogaster (Fruit fly). Length = 1021 Score = 30.9 bits (69), Expect = 0.23 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%) Query: 10 LVEAMTRACDASMPRVGPSPSPKRPVYWWTPEI 42 L + CD ++ R + SP R WWT ++ Sbjct: 279 LRSIVHSVCDTALGR-KLTRSPSRRARWWTADL 310 >sw:PO11_SCICO Retrovirus-related Pol polyprotein from type I retrotransposable element R1 [Contains: Reverse transcriptase (EC 2.7.7.49); Endonuclease] (Fragment). Sciara coprophila (Fungus gnat). Length = 1004 Score = 29.4 bits (65), Expect = 0.86 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 5 TSAEELVEAMTR----ACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAAR 53 S +E V+ +T A D +M + WW+ E+A RSE R Sbjct: 237 VSVDEKVDLLTEWIYGANDWNM--RRHTAVRTFQNEWWSVELAEKRSELRRRR 287 Database: /export/scratch/database/MYHITS2/sw.69 Posted date: Jun 15, 2005 7:24 PM Number of letters in database: 66,619,967 Number of sequences in database: 184,304 Lambda K H 0.309 0.161 0.507 Lambda K H 0.267 0.0498 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,630,787 Number of Sequences: 184304 Number of extensions: 303877 Number of successful extensions: 1079 Number of sequences better than 1.0: 2 Number of HSP's better than 1.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 1078 Number of HSP's gapped (non-prelim): 2 length of query: 55 length of database: 16,252,624 effective HSP length: 22 effective length of query: 33 effective length of database: 16,252,624 effective search space: 536336592 effective search space used: 536336592 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 65 (29.4 bits) SIB BLAST network server version 1.6 of November 26, 2002 compiled by GNU C version 3.2.3 20030502 (Red Hat Linux 3.2.3-49) compiled on Feb 1 2005. Welcome to the SIB BLAST Network Service (noko01) ============================================================================== Swiss Institute of Bioinformatics (SIB) Ludwig Institute for Cancer Research (LICR) Swiss Institute for Experimental Cancer Research (ISREC) ============================================================================== If results of this search are reported or published, please mention that the computation was performed at the SIB using the BLAST network service. PEPTIDE SEQUENCE DATABASES swiss SwissProt + updates 14-Jul-2004 swisstrembl SwissProt+Trembl+TrUpdates 14-Jul-2004 nr Non-redundant SP+Trembl+TrUpdates+gp 14-Jul-2004 shuffled SwissProt r30 shuffled in windows of 20 aa yeast S.cerevisiae translated genome ORFs NUCLEOTIDE SEQUENCE DATABASES embre * EMBL Data Library, Release 79, June 2004 embu * EmblUpdate 14-Jul-2004 embl * EMBL+EmblUpdate 14-Jul-2004 nr * Synonym to embl (and actually redundant). 14-Jul-2004 EST Database of Expressed Sequence Tags 14-Jul-2004 GSS Genome Survey Sequences 14-Jul-2004 HTG High-thruput Genomic Sequences 14-Jul-2004 STS Database of Sequence Tagged Sites 14-Jul-2004 repbase Repbase, August 04, 2002 simple Simple sequence repeats (J. Mol. Evol. 40:120, 1995) yeast S.cerevisiae genome worm C.elegans genome * The est, gss, htg, and sts divisions of EMBL are excluded from these databases. ============================================================================ The BLAST Network Service uses a server developed at SIB and the NCBI BLAST 2 software. For problems regarding this site, please contact one of the following persons: - problems with the programs: Christian Iseli (Christian.Iseli@licr.org) Giovanna Ambrosini (giovanna.ambrosini@isb-sib.ch) - problems with the databases: Victor Jongeneel (Victor.Jongeneel@isb-sib.ch) Laurent Falquet (Laurent.Falquet@isrec.unil.ch) ============================================================================ BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= consensus (55 letters) Database: /export/scratch/database/MYHITS2/tr.66 1,779,481 sequences; 567,248,508 total letters [blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file [blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr:Q868S4_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 82 2e-16 tr:Q5TRE1_ANOGA ENSANGP00000028134. Anopheles gambiae str. PEST. 77 7e-15 tr:Q7PUF9_ANOGA ENSANGP00000013332 (Fragment). Anopheles gambiae... 76 2e-14 tr:Q5TRT9_ANOGA ENSANGP00000026139. Anopheles gambiae str. PEST. 76 2e-14 tr:Q868T0_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 75 2e-14 tr:Q868R4_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 74 6e-14 tr:Q868S2_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 72 2e-13 tr:Q868S6_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 71 4e-13 tr:Q7Q900_ANOGA ENSANGP00000019818. Anopheles gambiae str. PEST. 71 4e-13 tr:Q8MY25_9NEOP Reverse transcriptase (Fragment). Papilio xuthus. 70 7e-13 tr:Q5TRT7_ANOGA ENSANGP00000026577 (Fragment). Anopheles gambiae... 69 1e-12 tr:Q868Q8_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 69 1e-12 tr:Q8MY29_9NEOP Reverse transcriptase (Fragment). Papilio xuthus. 69 2e-12 tr:Q8MY37_9NEOP Reverse transcrpitase (Fragment). Papilio xuthus. 68 2e-12 tr:Q868R6_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 68 2e-12 tr:Q868Q6_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 68 2e-12 tr:Q8MY33_9NEOP Reverse transcriptase. Papilio xuthus. 68 3e-12 tr:Q8MY35_9NEOP Reverse transcrpitase. Papilio xuthus. 68 3e-12 tr:O01419_BOMMO Pol protein. Bombyx mori (Silk moth). 68 3e-12 tr:Q868R0_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 68 4e-12 tr:Q868S8_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 68 4e-12 tr:Q8MY27_9NEOP Reverse transcriptase. Papilio xuthus. 67 5e-12 tr:Q868Q4_BOMMO Reverse transcriptase. Bombyx mori (Silk moth). 67 7e-12 tr:Q9N9Z1_DROME Endonuclease/reverse transcriptase. Drosophila m... 67 7e-12 tr:Q8MY31_9NEOP Reverse transcriptase. Papilio xuthus. 66 1e-11 tr:Q868R2_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 64 5e-11 tr:Q868S0_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 64 6e-11 tr:Q5TXM2_ANOGA ENSANGP00000027323 (Fragment). Anopheles gambiae... 64 6e-11 tr:O18558_AEDAE Lian-Aa1 retrotransposon protein. Aedes aegypti ... 62 2e-10 tr:O46184_DROSU Reverse transcriptase (Fragment). Drosophila sub... 61 3e-10 tr:O46179_DROSU Non-LTR retrotransposon reverse transcriptase (F... 61 5e-10 tr:Q868R8_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 60 8e-10 tr:Q9BLH9_SAMCY TRASSc4 protein (Fragment). Samia cynthia (Cynth... 58 3e-09 tr:Q7Q8Q1_ANOGA ENSANGP00000018097. Anopheles gambiae str. PEST. 58 4e-09 tr:Q5TT30_ANOGA ENSANGP00000026169 (Fragment). Anopheles gambiae... 58 4e-09 tr:Q7PGS5_ANOGA ENSANGP00000023029. Anopheles gambiae str. PEST. 56 9e-09 tr:Q9BLI3_BOMMO TRAS5 protein (Fragment). Bombyx mori (Silk moth). 50 8e-07 tr:Q9BLI0_SAMCY TRASSc3 protein (Fragment). Samia cynthia (Cynth... 43 7e-05 tr:Q9BLI4_BOMMO TRAS4 protein (Fragment). Bombyx mori (Silk moth). 43 8e-05 tr:Q9BLI5_BOMMO TRAS3 protein. Bombyx mori (Silk moth). 42 1e-04 tr:Q9BLH8_SAMCY TRASSc9 protein (Fragment). Samia cynthia (Cynth... 42 2e-04 tr:Q9BLI1_9NEOP TRASDJ protein (Fragment). Saturnia japonica. 42 2e-04 tr:Q6IGW7_DROME HDC04700. Drosophila melanogaster (Fruit fly). 41 3e-04 tr:O44313_DROMR Reverse transcriptase (Fragment). Drosophila mer... 41 4e-04 tr:Q9U4W1_AEDAE Pol-like protein. Aedes aegypti (Yellowfever mos... 40 7e-04 tr:Q93139_BOMMO ORF2. Bombyx mori (Silk moth). 39 0.002 tr:Q24363_DROME Putative ORF2. Drosophila melanogaster (Fruit fly). 38 0.003 tr:Q9YGS2_FUGRU Reverse transcriptase-like protein. Fugu rubripe... 36 0.010 tr:Q5TP69_ANOGA ENSANGP00000027917. Anopheles gambiae str. PEST. 36 0.017 tr:Q7PVA9_ANOGA ENSANGP00000013352 (Fragment). Anopheles gambiae... 33 0.072 tr:Q9BLI2_BOMMO TRAS6 protein (Fragment). Bombyx mori (Silk moth). 32 0.13 tr:Q9GP60_DROME Pol protein. Drosophila melanogaster (Fruit fly). 31 0.30 tr:Q5B9W9_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. 31 0.42 tr:Q5B9I5_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. 30 0.68 >tr:Q868S4_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 973 Score = 82.2 bits (202), Expect = 2e-16 Identities = 26/55 (47%), Positives = 33/55 (60%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 +SA +L A+ ACD S+PR P P+R YWWT EIA RS C+ ARR+ Sbjct: 237 FSNTSSALKLASAIANACDTSLPRRKGGPYPRRRAYWWTTEIAQCRSHCIEARRK 291 >tr:Q5TRE1_ANOGA ENSANGP00000028134. Anopheles gambiae str. PEST. Length = 318 Score = 76.8 bits (188), Expect = 7e-15 Identities = 32/55 (58%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSP-SPKRPVYWWTPEIAALRSECVAARR 54 +R TSAE LVEA+TRACD +M RV PS RP YWWTPEIA L C A + Sbjct: 238 EERGTSAESLVEALTRACDETMSRVFPSQEYTGRPAYWWTPEIANLVEACREADQ 292 >tr:Q7PUF9_ANOGA ENSANGP00000013332 (Fragment). Anopheles gambiae str. PEST. Length = 489 Score = 75.6 bits (185), Expect = 2e-14 Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 1/56 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPS-PKRPVYWWTPEIAALRSECVAARRR 55 DRAT A+ L+E++TRACD +M RV PS RP YWWTP I L +EC A +R Sbjct: 236 EDRATHAKSLIESLTRACDETMSRVFPSQDHTGRPAYWWTPAIEELVNECRIAEQR 291 >tr:Q5TRT9_ANOGA ENSANGP00000026139. Anopheles gambiae str. PEST. Length = 1221 Score = 75.6 bits (185), Expect = 2e-14 Identities = 29/56 (51%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSP-KRPVYWWTPEIAALRSECVAARRR 55 +R TSAE L MT ACD +M RV PS P RP YWWTP I L C A+ R Sbjct: 256 AERVTSAESLERVMTEACDGAMARVFPSQGPSGRPAYWWTPAIEDLCENCRLAKER 311 >tr:Q868T0_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1173 Score = 74.8 bits (183), Expect = 2e-14 Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGP-SPSPKRPVYWWTPEIAALRSECVAARRR 55 ++AT+ LV+AM ACD M R R VYWW P I LR+EC+AAR R Sbjct: 275 AEQATTHAGLVDAMVDACDIVMQRAPNVLQHQHRDVYWWAPVIEELRNECIAARER 330 >tr:Q868R4_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1222 Score = 73.7 bits (180), Expect = 6e-14 Identities = 29/55 (52%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 DRATSAEELVEAMTRACDASMPRVGPSPS-PKRPVYWWTPEIAALRSECVAARRR 55 +R TSAE L MT ACDA+M RV PS RP YWWTP I L C A+ R Sbjct: 257 ERVTSAESLERVMTEACDAAMARVFPSQGHSGRPAYWWTPAIEVLCENCRLAKER 311 >tr:Q868S2_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1201 Score = 71.8 bits (175), Expect = 2e-13 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSP-SPKRPVYWWTPEIAALRSECVAARRR 55 +RA S ++EA+ AC +M R+ SP +YWWTP I LR +C+AAR R Sbjct: 328 QERAVSHIGMIEALVDACSETMQRISGLHKSPHHDMYWWTPAIKRLRDDCLAARER 383 >tr:Q868S6_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1049 Score = 71.0 bits (173), Expect = 4e-13 Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPS---PSPKRPVYWWTPEIAALRSECVAARRR 55 A SA ++V A+T+A D +MPR P S ++PVYWW I R+ECVAARR+ Sbjct: 240 FGEAVSASQIVIALTKASDGAMPRRKPPNGATSRRQPVYWWNASIKIQRAECVAARRK 297 >tr:Q7Q900_ANOGA ENSANGP00000019818. Anopheles gambiae str. PEST. Length = 303 Score = 70.6 bits (172), Expect = 4e-13 Identities = 29/55 (52%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 DRATSAEELVEAMTRACDASMPRVGPSPS-PKRPVYWWTPEIAALRSECVAARRR 55 +R TSAE L MT ACDA+M RV PS RP YWWTP I L C+ A+ R Sbjct: 186 ERVTSAESLERVMTEACDAAMARVFPSQGHSGRPAYWWTPAIEVLCENCLLAKER 240 >tr:Q8MY25_9NEOP Reverse transcriptase (Fragment). Papilio xuthus. Length = 818 Score = 69.8 bits (170), Expect = 7e-13 Identities = 30/51 (58%), Positives = 35/51 (68%), Gaps = 1/51 (1%) Query: 2 DRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAA 52 D A L +MTR CDASMPR GP P KR VYWW+ +IAA+R+ CVAA Sbjct: 262 DIDERAAALRASMTRVCDASMPRQGPPP-RKRQVYWWSADIAAMRTACVAA 311 >tr:Q5TRT7_ANOGA ENSANGP00000026577 (Fragment). Anopheles gambiae str. PEST. Length = 267 Score = 69.1 bits (168), Expect = 1e-12 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPS--PSPKRPVYWWTPEIAALRSECVAARRR 55 A SA ++V A+T+A D +MPR P S ++PVYWW I R+ECVAARR+ Sbjct: 47 FGEAVSASQIVIALTKASDGAMPRRKPPNGTSRRQPVYWWNASIKIQRAECVAARRK 103 >tr:Q868Q8_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1154 Score = 69.1 bits (168), Expect = 1e-12 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPS-PKRPVYWWTPEIAALRSECVAARRR 55 ++A + ++VE MTRACD M R S P R +Y W+PE+ LR C+AAR R Sbjct: 267 AEQAVTDADIVEMMTRACDEVMQRANHLSSNPYRDLYSWSPELERLRGICLAARER 322 >tr:Q8MY29_9NEOP Reverse transcriptase (Fragment). Papilio xuthus. Length = 625 Score = 68.7 bits (167), Expect = 2e-12 Identities = 31/52 (59%), Positives = 37/52 (71%), Gaps = 1/52 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAA 52 P+ A EL +MTR CDASMPR GP P KR VYWW+ +IAALR+ CV+A Sbjct: 256 PNIDDRAAELRASMTRVCDASMPRQGPPP-RKRHVYWWSADIAALRAACVSA 306 >tr:Q8MY37_9NEOP Reverse transcrpitase (Fragment). Papilio xuthus. Length = 614 Score = 68.3 bits (166), Expect = 2e-12 Identities = 32/52 (61%), Positives = 36/52 (69%), Gaps = 1/52 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAA 52 PD A EL +MTR CDASMPR GP P KR VYWW+ +IAA+R CVAA Sbjct: 256 PDLDNRAAELRASMTRVCDASMPRQGPPP-RKRQVYWWSADIAAMRVACVAA 306 >tr:Q868R6_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1022 Score = 68.3 bits (166), Expect = 2e-12 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARR 54 R + ++LV+A+ +ACDA+M R+ + R VYWWT IA LR + AA R Sbjct: 244 EMRVDTPDDLVKALDKACDATMSRLKKTC-RWRGVYWWTSVIADLRRKSKAASR 296 >tr:Q868Q6_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1248 Score = 68.3 bits (166), Expect = 2e-12 Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPS-PKRPVYWWTPEIAALRSECVAARRR 55 DRAT A+ +E++TRACD +M RV PS RP YW TP I L +EC A +R Sbjct: 259 EDRATHAKSRIESLTRACDETMSRVFPSQDHTGRPAYWCTPAIEELENECRIAEQR 314 >tr:Q8MY33_9NEOP Reverse transcriptase. Papilio xuthus. Length = 1053 Score = 68.3 bits (166), Expect = 3e-12 Identities = 33/52 (63%), Positives = 37/52 (71%), Gaps = 1/52 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAA 52 PD A A EL +MTR CDASMPR GP P KR VYWW+ +IAA+R CVAA Sbjct: 256 PDLANRAAELRASMTRVCDASMPRQGPPP-RKRQVYWWSADIAAMRVACVAA 306 >tr:Q8MY35_9NEOP Reverse transcrpitase. Papilio xuthus. Length = 1053 Score = 67.9 bits (165), Expect = 3e-12 Identities = 33/52 (63%), Positives = 37/52 (71%), Gaps = 1/52 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAA 52 PD A A EL +MTR CDASMPR GP P KR VYWW+ +IAA+R CVAA Sbjct: 256 PDLANRAAELRASMTRVCDASMPRQGPPP-RKRQVYWWSADIAAMRVACVAA 306 >tr:O01419_BOMMO Pol protein. Bombyx mori (Silk moth). Length = 1067 Score = 67.9 bits (165), Expect = 3e-12 Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 D AE L EAM+R CD +MPRV P+R VYWW IA LR C +RR+ Sbjct: 264 ADVREGAERLREAMSRVCDYAMPRVRAYA-PRRQVYWWNEGIAGLRRRCAGSRRK 317 >tr:Q868R0_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1173 Score = 67.5 bits (164), Expect = 4e-12 Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Query: 1 PDRATSAEELVEAMTRACDASMPRVG---PSPSPKRPVYWWTPEIAALRSECVAARR 54 + A + E L A++RACD +M RV P K VYWWTPE A LR C A Sbjct: 271 AEIARTPETLQVALSRACDVAMERVSSSTPYYQTKPQVYWWTPERAQLRELCKEASD 327 >tr:Q868S8_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1099 Score = 67.5 bits (164), Expect = 4e-12 Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 DRATSAEELVEAMTRACDASMPRVGPSPS-PKRPVYWWTPEIAALRSECVAARRR 55 +RA S E +VE M CD +M RV S S P R ++WWTP + LR C AR R Sbjct: 252 ERAVSHERMVEIMLATCDKTMQRVTTSHSDPHRDLFWWTPLLRLLRENCDRARDR 306 >tr:Q8MY27_9NEOP Reverse transcriptase. Papilio xuthus. Length = 1053 Score = 67.1 bits (163), Expect = 5e-12 Identities = 31/52 (59%), Positives = 37/52 (71%), Gaps = 1/52 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAA 52 P+ A EL +MTR CDASMPR GP P KR VYWW+ +IAALR+ CV+A Sbjct: 256 PNIDDRAAELRASMTRVCDASMPRQGPPP-RKRHVYWWSADIAALRAACVSA 306 >tr:Q868Q4_BOMMO Reverse transcriptase. Bombyx mori (Silk moth). Length = 1076 Score = 66.7 bits (162), Expect = 7e-12 Identities = 27/52 (51%), Positives = 31/52 (59%) Query: 2 DRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAAR 53 D T AE AM R CDASMPRVG S +R WW+PEIA LR+ + A Sbjct: 266 DVETEAEWFRGAMHRICDASMPRVGSRHSGRRQSPWWSPEIARLRAVSIRAS 317 >tr:Q9N9Z1_DROME Endonuclease/reverse transcriptase. Drosophila melanogaster (Fruit fly). Length = 989 Score = 66.7 bits (162), Expect = 7e-12 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 2 DRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 T L++ + CDA MPR + K PVYWW+ + LR+EC+ ARR+ Sbjct: 248 HAETMVTALMDRLRAMCDAVMPR-KRNTKRKPPVYWWSDSLHQLRTECIKARRQ 300 >tr:Q8MY31_9NEOP Reverse transcriptase. Papilio xuthus. Length = 1053 Score = 66.0 bits (160), Expect = 1e-11 Identities = 32/52 (61%), Positives = 36/52 (69%), Gaps = 1/52 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAA 52 PD A EL +MTR CDASMPR GP P KR VYWW+ +IAA+R CVAA Sbjct: 256 PDLANRTAELRASMTRVCDASMPRQGPPP-RKRQVYWWSADIAAMRVACVAA 306 >tr:Q868R2_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1168 Score = 64.0 bits (155), Expect = 5e-11 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPS-PKRPVYWWTPEIAALRSECVAARRR 55 + S E LVE++T CD +M RV P+ RP YWWTP I A+ + Sbjct: 266 ARQVNSVESLVESLTSVCDETMSRVFPTQDHTGRPAYWWTPAIQAMIDNLSRKEQM 321 >tr:Q868S0_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1009 Score = 63.7 bits (154), Expect = 6e-11 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 3 RATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARR 54 T++E+L+ + AC+A+M + P + +WWT EI ALR EC R Sbjct: 243 EVTTSEDLMRILVTACNATMTKRKRYT-PNKSAFWWTLEIEALRKECKHRDR 293 >tr:Q5TXM2_ANOGA ENSANGP00000027323 (Fragment). Anopheles gambiae str. PEST. Length = 388 Score = 63.7 bits (154), Expect = 6e-11 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPS-PKRPVYWWTPEIAALRSECVAARRR 55 + S E LVE++T CD +M RV P+ RP YWWTP I A+ + Sbjct: 217 ARQVNSVESLVESLTSVCDETMSRVFPTQDHTGRPAYWWTPAIQAMIDNLSRKEQM 272 >tr:O18558_AEDAE Lian-Aa1 retrotransposon protein. Aedes aegypti (Yellowfever mosquito). Length = 1189 Score = 62.1 bits (150), Expect = 2e-10 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPS--PKRPVYWWTPEIAALRSECVAARRR 55 + + ++ V+ T + P S R WW ++ LR +C + R Sbjct: 241 IENPSDLDDAVDTTTSYIMEAFEEACPLRSVKTTRGTPWWNSDLTRLRKQCRRSWNR 297 >tr:O46184_DROSU Reverse transcriptase (Fragment). Drosophila subobscura (Fruit fly). Length = 554 Score = 61.4 bits (148), Expect = 3e-10 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPK--RPVYWWTPEIAALRSECVAARRR 55 PD LV+ T AC+ + PS P+ + WW+ I LR +C R Sbjct: 264 PDTQDDFNRLVDNFTEACNKAFMAACPSTKPRGKKKPPWWSKHIDTLRKDCRTLFNR 320 >tr:O46179_DROSU Non-LTR retrotransposon reverse transcriptase (Fragment). Drosophila subobscura (Fruit fly). Length = 279 Score = 60.6 bits (146), Expect = 5e-10 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPK--RPVYWWTPEIAALRSECVAARRR 55 PD LV+ T AC+ + PS P+ + WW+ IA LR +C R Sbjct: 109 PDTQDDLNRLVDDFTEACNKAFMAACPSTKPRGKKKPPWWSKHIATLRKDCRTLFNR 165 >tr:Q868R8_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 988 Score = 59.8 bits (144), Expect = 8e-10 Identities = 26/55 (47%), Positives = 32/55 (58%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 + EEL +A+T ACD +MPR P +RPVYWWT EI LRS +RR Sbjct: 253 FGHVATPEELTQAITVACDGTMPRQPPRRQGRRPVYWWTSEIDRLRSHFYGMQRR 307 >tr:Q9BLH9_SAMCY TRASSc4 protein (Fragment). Samia cynthia (Cynthia moth) (Ailanthus silkmoth). Length = 640 Score = 57.9 bits (139), Expect = 3e-09 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSP--SPKRPVYWWTPEIAALRSECVAARRR 55 + + E+ +T+AC ++P++ + K + WWT E+ + + +RR Sbjct: 215 QELDSIIEKYNNIITQACKLNIPKINRNTTNKQKNNLPWWTVELEEEKRRVLTMKRR 271 >tr:Q7Q8Q1_ANOGA ENSANGP00000018097. Anopheles gambiae str. PEST. Length = 629 Score = 57.5 bits (138), Expect = 4e-09 Identities = 26/54 (48%), Positives = 30/54 (55%) Query: 2 DRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 DR A L A+T+ACDA+M R+G S VYWWTP I L C AR R Sbjct: 410 DRIFDAASLGRALTQACDATMARIGHSQRKSCNVYWWTPAIGELTERCRLARER 463 >tr:Q5TT30_ANOGA ENSANGP00000026169 (Fragment). Anopheles gambiae str. PEST. Length = 100 Score = 57.5 bits (138), Expect = 4e-09 Identities = 22/45 (48%), Positives = 28/45 (62%) Query: 11 VEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 V A+ ACD S+ R P P++ YWWT EIA RS C+ ARR+ Sbjct: 1 VPAIANACDTSVLRRKGGPYPRQRAYWWTTEIAQCRSHCIEARRK 45 >tr:Q7PGS5_ANOGA ENSANGP00000023029. Anopheles gambiae str. PEST. Length = 700 Score = 56.3 bits (135), Expect = 9e-09 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 3 RATSAEELVEAMTRACDASMPRVGPSPS-PKRPVYWWTPEIAALRSECVAARRR 55 + S E LVE++T CD +M RV P RP YWWTP I A+ + Sbjct: 367 QVNSVESLVESLTSVCDETMSRVFPVQDHTGRPAYWWTPAIQAMIDNHSRKEQM 420 >tr:Q9BLI3_BOMMO TRAS5 protein (Fragment). Bombyx mori (Silk moth). Length = 656 Score = 49.8 bits (118), Expect = 8e-07 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Query: 2 DRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 D ++ ++A+T AC SMP + K + WW+ E+A L+ E +RR Sbjct: 236 DIDDITDKYIKAITEACTESMPLKKKTE--KLTLPWWSEELARLKKEVSTLKRR 287 >tr:Q9BLI0_SAMCY TRASSc3 protein (Fragment). Samia cynthia (Cynthia moth) (Ailanthus silkmoth). Length = 641 Score = 43.2 bits (101), Expect = 7e-05 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 T + V + AC+ +P+ G RP WW+ ++ L+ E +RR Sbjct: 215 EGLETVVSDYVICIEEACNKVVPKAGGVKKVARP-PWWSEDLDRLKREATRRKRR 268 >tr:Q9BLI4_BOMMO TRAS4 protein (Fragment). Bombyx mori (Silk moth). Length = 653 Score = 43.2 bits (101), Expect = 8e-05 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 5 TSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 + L +++T AC SMP + + + WW+ E+A L+ +RR Sbjct: 234 NTTLGLTKSITDACVESMPIKKSNETLT--LPWWSEELADLKRNVATKKRR 282 >tr:Q9BLI5_BOMMO TRAS3 protein. Bombyx mori (Silk moth). Length = 1682 Score = 42.5 bits (99), Expect = 1e-04 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 + + + + C+ ++P+ K + WW+ E+AA++ E +RR Sbjct: 740 AEIEIAENKYTNIIKTVCNQTIPKKK--TQEKFTLPWWSDELAAMKREVATRKRR 792 >tr:Q9BLH8_SAMCY TRASSc9 protein (Fragment). Samia cynthia (Cynthia moth) (Ailanthus silkmoth). Length = 636 Score = 42.1 bits (98), Expect = 2e-04 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 D + + A+ AC ++P+ P WW ++ L+ E + +RR Sbjct: 214 EDLEIAIQAYTSAIHEACSTTIPQARPW-KGNPVPPWWNRQLEDLKREVLRRKRR 267 >tr:Q9BLI1_9NEOP TRASDJ protein (Fragment). Saturnia japonica. Length = 614 Score = 41.7 bits (97), Expect = 2e-04 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 + + E +T ACD +P+ PK + WW+ E+ + + +RR Sbjct: 193 EELDNTINEYDAVVTEACDEVLPKFK--CRPKLKIPWWSKELEVKKKRTLTLKRR 245 >tr:Q6IGW7_DROME HDC04700. Drosophila melanogaster (Fruit fly). Length = 339 Score = 41.3 bits (96), Expect = 3e-04 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 2 DRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSEC 49 D +SA +L+ + + C+A+M R VYWW+ ++ LRS+C Sbjct: 248 DAESSAADLMNMLGKTCEATMRRKKKVRRK-PHVYWWSATLSQLRSDC 294 >tr:O44313_DROMR Reverse transcriptase (Fragment). Drosophila mercatorum mercatorum. Length = 664 Score = 40.9 bits (95), Expect = 4e-04 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPS--PKRPVYWWTPEIAA 44 RA +++E V A+ V KR V WWT + Sbjct: 268 QFRAMTSDEQVTALRSLVHQVSDAVFGRQQLRAKRRVSWWTAALTD 313 >tr:Q9U4W1_AEDAE Pol-like protein. Aedes aegypti (Yellowfever mosquito). Length = 1208 Score = 40.2 bits (93), Expect = 7e-04 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Query: 4 ATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPE----IAALRSECVAARR 54 + E + + +A S+PR P+P +R + WW+P+ I R AA+R Sbjct: 255 PDNIEGFLSVLHQAASTSIPRTTPNP-GRRSLPWWSPDIKKVIKERRKALRAAKR 308 >tr:Q93139_BOMMO ORF2. Bombyx mori (Silk moth). Length = 1162 Score = 39.0 bits (90), Expect = 0.002 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 3 RATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 ++ +T+ C+ S+P+ + WW+ ++A +R E RRR Sbjct: 233 VESAINTYTNIITKTCEQSIPKKTSREILT--IPWWSEKLAEMRKETNTMRRR 283 >tr:Q24363_DROME Putative ORF2. Drosophila melanogaster (Fruit fly). Length = 1219 Score = 37.9 bits (87), Expect = 0.003 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 7 AEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 A + + + + S+P+ P+ P R V WW + LR E A ++ Sbjct: 258 AALINRIILYSANLSIPQTSPNTHPYR-VPWWNKHLDQLRKEKQLAWKK 305 >tr:Q9YGS2_FUGRU Reverse transcriptase-like protein. Fugu rubripes (Japanese pufferfish) (Takifugu rubripes). Length = 1027 Score = 36.3 bits (83), Expect = 0.010 Identities = 9/55 (16%), Positives = 20/55 (36%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 + + AE ++ D+ P + +R W+ I L+ + R+ Sbjct: 336 AEVDSIAEGAATSLRITLDSVAPLKKKIVNQRRCAPWYNSHIRTLKQKVRRLERK 390 >tr:Q5TP69_ANOGA ENSANGP00000027917. Anopheles gambiae str. PEST. Length = 422 Score = 35.5 bits (81), Expect = 0.017 Identities = 13/25 (52%), Positives = 14/25 (56%) Query: 30 SPKRPVYWWTPEIAALRSECVAARR 54 RP YWWTPEIA L C A + Sbjct: 326 YTGRPAYWWTPEIANLVEACREADQ 350 >tr:Q7PVA9_ANOGA ENSANGP00000013352 (Fragment). Anopheles gambiae str. PEST. Length = 1215 Score = 33.2 bits (75), Expect = 0.072 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 10 LVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIA-ALRSECVAARRR 55 + A +S+PR P++ V WW E+A A+++ RRR Sbjct: 263 FANIILEAATSSIPRTNG-TLPRKYVPWWNKEVAIAIKNRRKHLRRR 308 >tr:Q9BLI2_BOMMO TRAS6 protein (Fragment). Bombyx mori (Silk moth). Length = 636 Score = 32.5 bits (73), Expect = 0.13 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Query: 6 SAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 + L + + C S+P K + WW+ ++A ++ E +RR Sbjct: 220 TINTLTKTIDNTCTISIPIKQ--TKEKLTLPWWSEKLAGMKKEVATRKRR 267 >tr:Q9GP60_DROME Pol protein. Drosophila melanogaster (Fruit fly). Length = 1227 Score = 31.3 bits (70), Expect = 0.30 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 11/47 (23%) Query: 7 AEELVEAMTRACDASMPRVGPSPSPKR-----PVYWWTPEIAALRSE 48 ++ + + A + S+P KR V WW + LR + Sbjct: 262 VAQMTKVIRSAANYSIP------QTKRVIHKAKVPWWNANLQQLRDQ 302 >tr:Q5B9W9_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. Length = 1538 Score = 30.9 bits (69), Expect = 0.42 Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 1/36 (2%) Query: 10 LVEAMTRACDASMPRVGPSPSPK-RPVYWWTPEIAA 44 L E + + ++ + + WWTPE+ Sbjct: 666 LAEQLVQISQLAIQGASRYNTRRLPRTPWWTPELTD 701 >tr:Q5B9I5_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. Length = 758 Score = 30.2 bits (67), Expect = 0.68 Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 1/36 (2%) Query: 10 LVEAMTRACDASMPRVGPSPSPK-RPVYWWTPEIAA 44 L E + + ++ + + WWTPE+ Sbjct: 642 LAEQLVQISQLAIQGASRYNTRRLPRTPWWTPELTD 677 Database: /export/scratch/database/MYHITS2/tr.66 Posted date: Jun 13, 2005 6:40 PM Number of letters in database: 567,248,508 Number of sequences in database: 1,779,481 Lambda K H 0.309 0.161 0.507 Lambda K H 0.267 0.0498 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,829,659 Number of Sequences: 1779481 Number of extensions: 2650904 Number of successful extensions: 9154 Number of sequences better than 1.0: 61 Number of HSP's better than 1.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 9064 Number of HSP's gapped (non-prelim): 65 length of query: 55 length of database: 16,252,624 effective HSP length: 4 effective length of query: 51 effective length of database: 16,252,624 effective search space: 828883824 effective search space used: 828883824 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 66 (29.8 bits)