SIB BLAST network server version 1.6 of November 26, 2002 compiled by GNU C version 3.2.3 20030502 (Red Hat Linux 3.2.3-49) compiled on Feb 1 2005. Welcome to the SIB BLAST Network Service (noko01) ============================================================================== Swiss Institute of Bioinformatics (SIB) Ludwig Institute for Cancer Research (LICR) Swiss Institute for Experimental Cancer Research (ISREC) ============================================================================== If results of this search are reported or published, please mention that the computation was performed at the SIB using the BLAST network service. PEPTIDE SEQUENCE DATABASES swiss SwissProt + updates 14-Jul-2004 swisstrembl SwissProt+Trembl+TrUpdates 14-Jul-2004 nr Non-redundant SP+Trembl+TrUpdates+gp 14-Jul-2004 shuffled SwissProt r30 shuffled in windows of 20 aa yeast S.cerevisiae translated genome ORFs NUCLEOTIDE SEQUENCE DATABASES embre * EMBL Data Library, Release 79, June 2004 embu * EmblUpdate 14-Jul-2004 embl * EMBL+EmblUpdate 14-Jul-2004 nr * Synonym to embl (and actually redundant). 14-Jul-2004 EST Database of Expressed Sequence Tags 14-Jul-2004 GSS Genome Survey Sequences 14-Jul-2004 HTG High-thruput Genomic Sequences 14-Jul-2004 STS Database of Sequence Tagged Sites 14-Jul-2004 repbase Repbase, August 04, 2002 simple Simple sequence repeats (J. Mol. Evol. 40:120, 1995) yeast S.cerevisiae genome worm C.elegans genome * The est, gss, htg, and sts divisions of EMBL are excluded from these databases. ============================================================================ The BLAST Network Service uses a server developed at SIB and the NCBI BLAST 2 software. For problems regarding this site, please contact one of the following persons: - problems with the programs: Christian Iseli (Christian.Iseli@licr.org) Giovanna Ambrosini (giovanna.ambrosini@isb-sib.ch) - problems with the databases: Victor Jongeneel (Victor.Jongeneel@isb-sib.ch) Laurent Falquet (Laurent.Falquet@isrec.unil.ch) ============================================================================ BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= consensus (55 letters) Database: /export/scratch/database/MYHITS2/sw.69 184,304 sequences; 66,619,967 total letters [blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file [blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sw:Y2R2_DROME Hypothetical 115 kDa protein in type I retrotransp... 30 0.43 >sw:Y2R2_DROME Hypothetical 115 kDa protein in type I retrotransposable element R1DM (ORF 2). Drosophila melanogaster (Fruit fly). Length = 1021 Score = 30.2 bits (67), Expect = 0.43 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Query: 10 LRASMTRACDASMPRVGPSPYPKRPVYWWTPEI 42 LR+ + CD ++ R + P R WWT ++ Sbjct: 279 LRSIVHSVCDTALGR-KLTRSPSRRARWWTADL 310 Database: /export/scratch/database/MYHITS2/sw.69 Posted date: Jun 15, 2005 7:24 PM Number of letters in database: 66,619,967 Number of sequences in database: 184,304 Lambda K H 0.311 0.158 0.499 Lambda K H 0.267 0.0487 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,015,113 Number of Sequences: 184304 Number of extensions: 262592 Number of successful extensions: 956 Number of sequences better than 1.0: 1 Number of HSP's better than 1.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 955 Number of HSP's gapped (non-prelim): 1 length of query: 55 length of database: 16,252,624 effective HSP length: 22 effective length of query: 33 effective length of database: 16,252,624 effective search space: 536336592 effective search space used: 536336592 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 64 (29.0 bits) SIB BLAST network server version 1.6 of November 26, 2002 compiled by GNU C version 3.2.3 20030502 (Red Hat Linux 3.2.3-49) compiled on Feb 1 2005. Welcome to the SIB BLAST Network Service (noko01) ============================================================================== Swiss Institute of Bioinformatics (SIB) Ludwig Institute for Cancer Research (LICR) Swiss Institute for Experimental Cancer Research (ISREC) ============================================================================== If results of this search are reported or published, please mention that the computation was performed at the SIB using the BLAST network service. PEPTIDE SEQUENCE DATABASES swiss SwissProt + updates 14-Jul-2004 swisstrembl SwissProt+Trembl+TrUpdates 14-Jul-2004 nr Non-redundant SP+Trembl+TrUpdates+gp 14-Jul-2004 shuffled SwissProt r30 shuffled in windows of 20 aa yeast S.cerevisiae translated genome ORFs NUCLEOTIDE SEQUENCE DATABASES embre * EMBL Data Library, Release 79, June 2004 embu * EmblUpdate 14-Jul-2004 embl * EMBL+EmblUpdate 14-Jul-2004 nr * Synonym to embl (and actually redundant). 14-Jul-2004 EST Database of Expressed Sequence Tags 14-Jul-2004 GSS Genome Survey Sequences 14-Jul-2004 HTG High-thruput Genomic Sequences 14-Jul-2004 STS Database of Sequence Tagged Sites 14-Jul-2004 repbase Repbase, August 04, 2002 simple Simple sequence repeats (J. Mol. Evol. 40:120, 1995) yeast S.cerevisiae genome worm C.elegans genome * The est, gss, htg, and sts divisions of EMBL are excluded from these databases. ============================================================================ The BLAST Network Service uses a server developed at SIB and the NCBI BLAST 2 software. For problems regarding this site, please contact one of the following persons: - problems with the programs: Christian Iseli (Christian.Iseli@licr.org) Giovanna Ambrosini (giovanna.ambrosini@isb-sib.ch) - problems with the databases: Victor Jongeneel (Victor.Jongeneel@isb-sib.ch) Laurent Falquet (Laurent.Falquet@isrec.unil.ch) ============================================================================ BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= consensus (55 letters) Database: /export/scratch/database/MYHITS2/tr.66 1,779,481 sequences; 567,248,508 total letters [blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file [blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr:Q868S4_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 83 1e-16 tr:Q7PUF9_ANOGA ENSANGP00000013332 (Fragment). Anopheles gambiae... 76 1e-14 tr:Q5TRE1_ANOGA ENSANGP00000028134. Anopheles gambiae str. PEST. 76 1e-14 tr:Q5TRT9_ANOGA ENSANGP00000026139. Anopheles gambiae str. PEST. 75 2e-14 tr:Q868R4_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 74 5e-14 tr:Q868Q6_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 72 1e-13 tr:Q8MY25_9NEOP Reverse transcriptase (Fragment). Papilio xuthus. 71 3e-13 tr:Q7Q900_ANOGA ENSANGP00000019818. Anopheles gambiae str. PEST. 71 4e-13 tr:Q8MY37_9NEOP Reverse transcrpitase (Fragment). Papilio xuthus. 70 8e-13 tr:Q8MY29_9NEOP Reverse transcriptase (Fragment). Papilio xuthus. 69 9e-13 tr:Q8MY33_9NEOP Reverse transcriptase. Papilio xuthus. 69 2e-12 tr:Q868S2_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 69 2e-12 tr:Q8MY35_9NEOP Reverse transcrpitase. Papilio xuthus. 69 2e-12 tr:O01419_BOMMO Pol protein. Bombyx mori (Silk moth). 69 2e-12 tr:Q8MY27_9NEOP Reverse transcriptase. Papilio xuthus. 68 3e-12 tr:Q9N9Z1_DROME Endonuclease/reverse transcriptase. Drosophila m... 68 4e-12 tr:Q868Q4_BOMMO Reverse transcriptase. Bombyx mori (Silk moth). 68 4e-12 tr:Q868T0_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 67 5e-12 tr:Q8MY31_9NEOP Reverse transcriptase. Papilio xuthus. 67 6e-12 tr:Q868S8_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 66 9e-12 tr:Q868R6_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 66 9e-12 tr:Q868Q8_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 66 1e-11 tr:Q868R2_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 65 2e-11 tr:Q5TXM2_ANOGA ENSANGP00000027323 (Fragment). Anopheles gambiae... 64 3e-11 tr:Q868S0_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 64 6e-11 tr:Q868S6_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 61 5e-10 tr:Q868R8_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 60 7e-10 tr:O46184_DROSU Reverse transcriptase (Fragment). Drosophila sub... 60 7e-10 tr:Q9BLH9_SAMCY TRASSc4 protein (Fragment). Samia cynthia (Cynth... 60 8e-10 tr:Q5TRT7_ANOGA ENSANGP00000026577 (Fragment). Anopheles gambiae... 59 1e-09 tr:O46179_DROSU Non-LTR retrotransposon reverse transcriptase (F... 59 1e-09 tr:Q7Q8Q1_ANOGA ENSANGP00000018097. Anopheles gambiae str. PEST. 58 2e-09 tr:Q868R0_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 57 5e-09 tr:Q7PGS5_ANOGA ENSANGP00000023029. Anopheles gambiae str. PEST. 56 8e-09 tr:Q5TT30_ANOGA ENSANGP00000026169 (Fragment). Anopheles gambiae... 56 1e-08 tr:Q9BLI3_BOMMO TRAS5 protein (Fragment). Bombyx mori (Silk moth). 51 6e-07 tr:Q9BLI1_9NEOP TRASDJ protein (Fragment). Saturnia japonica. 44 4e-05 tr:Q9BLH8_SAMCY TRASSc9 protein (Fragment). Samia cynthia (Cynth... 44 4e-05 tr:Q9BLI4_BOMMO TRAS4 protein (Fragment). Bombyx mori (Silk moth). 44 5e-05 tr:Q9BLI5_BOMMO TRAS3 protein. Bombyx mori (Silk moth). 44 6e-05 tr:Q6IGW7_DROME HDC04700. Drosophila melanogaster (Fruit fly). 42 2e-04 tr:Q9BLI0_SAMCY TRASSc3 protein (Fragment). Samia cynthia (Cynth... 41 5e-04 tr:O44313_DROMR Reverse transcriptase (Fragment). Drosophila mer... 41 6e-04 tr:Q9U4W1_AEDAE Pol-like protein. Aedes aegypti (Yellowfever mos... 40 6e-04 tr:O18558_AEDAE Lian-Aa1 retrotransposon protein. Aedes aegypti ... 39 0.002 tr:Q93139_BOMMO ORF2. Bombyx mori (Silk moth). 38 0.003 tr:Q24363_DROME Putative ORF2. Drosophila melanogaster (Fruit fly). 36 0.010 tr:Q7PVA9_ANOGA ENSANGP00000013352 (Fragment). Anopheles gambiae... 35 0.021 tr:Q9BLI2_BOMMO TRAS6 protein (Fragment). Bombyx mori (Silk moth). 35 0.026 tr:Q5TP69_ANOGA ENSANGP00000027917. Anopheles gambiae str. PEST. 35 0.026 tr:Q9YGS2_FUGRU Reverse transcriptase-like protein. Fugu rubripe... 33 0.082 tr:Q9GP60_DROME Pol protein. Drosophila melanogaster (Fruit fly). 31 0.40 >tr:Q868S4_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 973 Score = 82.6 bits (203), Expect = 1e-16 Identities = 27/55 (49%), Positives = 36/55 (65%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 F +SA +L +++ ACD S+PR PYP+R YWWT EIA RS C+ ARR+ Sbjct: 237 FSNTSSALKLASAIANACDTSLPRRKGGPYPRRRAYWWTTEIAQCRSHCIEARRK 291 >tr:Q7PUF9_ANOGA ENSANGP00000013332 (Fragment). Anopheles gambiae str. PEST. Length = 489 Score = 76.0 bits (186), Expect = 1e-14 Identities = 29/56 (51%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPY-PKRPVYWWTPEIAALRSACVAARRR 55 DRAT A+ L S+TRACD +M RV PS RP YWWTP I L + C A +R Sbjct: 236 EDRATHAKSLIESLTRACDETMSRVFPSQDHTGRPAYWWTPAIEELVNECRIAEQR 291 >tr:Q5TRE1_ANOGA ENSANGP00000028134. Anopheles gambiae str. PEST. Length = 318 Score = 76.0 bits (186), Expect = 1e-14 Identities = 31/55 (56%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSP-YPKRPVYWWTPEIAALRSACVAARR 54 +R TSAE L ++TRACD +M RV PS Y RP YWWTPEIA L AC A + Sbjct: 238 EERGTSAESLVEALTRACDETMSRVFPSQEYTGRPAYWWTPEIANLVEACREADQ 292 >tr:Q5TRT9_ANOGA ENSANGP00000026139. Anopheles gambiae str. PEST. Length = 1221 Score = 75.2 bits (184), Expect = 2e-14 Identities = 29/56 (51%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYP-KRPVYWWTPEIAALRSACVAARRR 55 +R TSAE L MT ACD +M RV PS P RP YWWTP I L C A+ R Sbjct: 256 AERVTSAESLERVMTEACDGAMARVFPSQGPSGRPAYWWTPAIEDLCENCRLAKER 311 >tr:Q868R4_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1222 Score = 74.1 bits (181), Expect = 5e-14 Identities = 29/55 (52%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 DRATSAEELRASMTRACDASMPRVGPSPY-PKRPVYWWTPEIAALRSACVAARRR 55 +R TSAE L MT ACDA+M RV PS RP YWWTP I L C A+ R Sbjct: 257 ERVTSAESLERVMTEACDAAMARVFPSQGHSGRPAYWWTPAIEVLCENCRLAKER 311 >tr:Q868Q6_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1248 Score = 72.2 bits (176), Expect = 1e-13 Identities = 27/56 (48%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPY-PKRPVYWWTPEIAALRSACVAARRR 55 DRAT A+ S+TRACD +M RV PS RP YW TP I L + C A +R Sbjct: 259 EDRATHAKSRIESLTRACDETMSRVFPSQDHTGRPAYWCTPAIEELENECRIAEQR 314 >tr:Q8MY25_9NEOP Reverse transcriptase (Fragment). Papilio xuthus. Length = 818 Score = 71.4 bits (174), Expect = 3e-13 Identities = 34/51 (66%), Positives = 38/51 (74%), Gaps = 1/51 (1%) Query: 2 DRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAA 52 D A LRASMTR CDASMPR GP P KR VYWW+ +IAA+R+ACVAA Sbjct: 262 DIDERAAALRASMTRVCDASMPRQGPPP-RKRQVYWWSADIAAMRTACVAA 311 >tr:Q7Q900_ANOGA ENSANGP00000019818. Anopheles gambiae str. PEST. Length = 303 Score = 71.0 bits (173), Expect = 4e-13 Identities = 29/55 (52%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 DRATSAEELRASMTRACDASMPRVGPSPY-PKRPVYWWTPEIAALRSACVAARRR 55 +R TSAE L MT ACDA+M RV PS RP YWWTP I L C+ A+ R Sbjct: 186 ERVTSAESLERVMTEACDAAMARVFPSQGHSGRPAYWWTPAIEVLCENCLLAKER 240 >tr:Q8MY37_9NEOP Reverse transcrpitase (Fragment). Papilio xuthus. Length = 614 Score = 69.9 bits (170), Expect = 8e-13 Identities = 35/52 (67%), Positives = 38/52 (73%), Gaps = 1/52 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAA 52 D A ELRASMTR CDASMPR GP P KR VYWW+ +IAA+R ACVAA Sbjct: 256 PDLDNRAAELRASMTRVCDASMPRQGPPP-RKRQVYWWSADIAAMRVACVAA 306 >tr:Q8MY29_9NEOP Reverse transcriptase (Fragment). Papilio xuthus. Length = 625 Score = 69.5 bits (169), Expect = 9e-13 Identities = 34/52 (65%), Positives = 39/52 (75%), Gaps = 1/52 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAA 52 + A ELRASMTR CDASMPR GP P KR VYWW+ +IAALR+ACV+A Sbjct: 256 PNIDDRAAELRASMTRVCDASMPRQGPPP-RKRHVYWWSADIAALRAACVSA 306 >tr:Q8MY33_9NEOP Reverse transcriptase. Papilio xuthus. Length = 1053 Score = 68.7 bits (167), Expect = 2e-12 Identities = 36/52 (69%), Positives = 39/52 (75%), Gaps = 1/52 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAA 52 D A A ELRASMTR CDASMPR GP P KR VYWW+ +IAA+R ACVAA Sbjct: 256 PDLANRAAELRASMTRVCDASMPRQGPPP-RKRQVYWWSADIAAMRVACVAA 306 >tr:Q868S2_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1201 Score = 68.7 bits (167), Expect = 2e-12 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPY-PKRPVYWWTPEIAALRSACVAARRR 55 +RA S + ++ AC +M R+ P +YWWTP I LR C+AAR R Sbjct: 328 QERAVSHIGMIEALVDACSETMQRISGLHKSPHHDMYWWTPAIKRLRDDCLAARER 383 >tr:Q8MY35_9NEOP Reverse transcrpitase. Papilio xuthus. Length = 1053 Score = 68.7 bits (167), Expect = 2e-12 Identities = 36/52 (69%), Positives = 39/52 (75%), Gaps = 1/52 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAA 52 D A A ELRASMTR CDASMPR GP P KR VYWW+ +IAA+R ACVAA Sbjct: 256 PDLANRAAELRASMTRVCDASMPRQGPPP-RKRQVYWWSADIAAMRVACVAA 306 >tr:O01419_BOMMO Pol protein. Bombyx mori (Silk moth). Length = 1067 Score = 68.7 bits (167), Expect = 2e-12 Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 D AE LR +M+R CD +MPRV P+R VYWW IA LR C +RR+ Sbjct: 264 ADVREGAERLREAMSRVCDYAMPRVRAYA-PRRQVYWWNEGIAGLRRRCAGSRRK 317 >tr:Q8MY27_9NEOP Reverse transcriptase. Papilio xuthus. Length = 1053 Score = 68.3 bits (166), Expect = 3e-12 Identities = 34/52 (65%), Positives = 39/52 (75%), Gaps = 1/52 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAA 52 + A ELRASMTR CDASMPR GP P KR VYWW+ +IAALR+ACV+A Sbjct: 256 PNIDDRAAELRASMTRVCDASMPRQGPPP-RKRHVYWWSADIAALRAACVSA 306 >tr:Q9N9Z1_DROME Endonuclease/reverse transcriptase. Drosophila melanogaster (Fruit fly). Length = 989 Score = 67.5 bits (164), Expect = 4e-12 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 2 DRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 T L + CDA MPR + K PVYWW+ + LR+ C+ ARR+ Sbjct: 248 HAETMVTALMDRLRAMCDAVMPR-KRNTKRKPPVYWWSDSLHQLRTECIKARRQ 300 >tr:Q868Q4_BOMMO Reverse transcriptase. Bombyx mori (Silk moth). Length = 1076 Score = 67.5 bits (164), Expect = 4e-12 Identities = 26/52 (50%), Positives = 31/52 (59%) Query: 2 DRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAAR 53 D T AE R +M R CDASMPRVG +R WW+PEIA LR+ + A Sbjct: 266 DVETEAEWFRGAMHRICDASMPRVGSRHSGRRQSPWWSPEIARLRAVSIRAS 317 >tr:Q868T0_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1173 Score = 67.2 bits (163), Expect = 5e-12 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGP-SPYPKRPVYWWTPEIAALRSACVAARRR 55 ++AT+ L +M ACD M R + R VYWW P I LR+ C+AAR R Sbjct: 275 AEQATTHAGLVDAMVDACDIVMQRAPNVLQHQHRDVYWWAPVIEELRNECIAARER 330 >tr:Q8MY31_9NEOP Reverse transcriptase. Papilio xuthus. Length = 1053 Score = 66.8 bits (162), Expect = 6e-12 Identities = 35/52 (67%), Positives = 38/52 (73%), Gaps = 1/52 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAA 52 D A ELRASMTR CDASMPR GP P KR VYWW+ +IAA+R ACVAA Sbjct: 256 PDLANRTAELRASMTRVCDASMPRQGPPP-RKRQVYWWSADIAAMRVACVAA 306 >tr:Q868S8_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1099 Score = 66.4 bits (161), Expect = 9e-12 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 2 DRATSAEELRASMTRACDASMPRVGPSP-YPKRPVYWWTPEIAALRSACVAARRR 55 +RA S E + M CD +M RV S P R ++WWTP + LR C AR R Sbjct: 252 ERAVSHERMVEIMLATCDKTMQRVTTSHSDPHRDLFWWTPLLRLLRENCDRARDR 306 >tr:Q868R6_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1022 Score = 66.4 bits (161), Expect = 9e-12 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARR 54 R + ++L ++ +ACDA+M R+ + R VYWWT IA LR AA R Sbjct: 244 EMRVDTPDDLVKALDKACDATMSRLKKTC-RWRGVYWWTSVIADLRRKSKAASR 296 >tr:Q868Q8_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1154 Score = 66.0 bits (160), Expect = 1e-11 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGP-SPYPKRPVYWWTPEIAALRSACVAARRR 55 ++A + ++ MTRACD M R S P R +Y W+PE+ LR C+AAR R Sbjct: 267 AEQAVTDADIVEMMTRACDEVMQRANHLSSNPYRDLYSWSPELERLRGICLAARER 322 >tr:Q868R2_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1168 Score = 64.8 bits (157), Expect = 2e-11 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPY-PKRPVYWWTPEIAALRSACVAARRR 55 + S E L S+T CD +M RV P+ RP YWWTP I A+ + Sbjct: 266 ARQVNSVESLVESLTSVCDETMSRVFPTQDHTGRPAYWWTPAIQAMIDNLSRKEQM 321 >tr:Q5TXM2_ANOGA ENSANGP00000027323 (Fragment). Anopheles gambiae str. PEST. Length = 388 Score = 64.5 bits (156), Expect = 3e-11 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPY-PKRPVYWWTPEIAALRSACVAARRR 55 + S E L S+T CD +M RV P+ RP YWWTP I A+ + Sbjct: 217 ARQVNSVESLVESLTSVCDETMSRVFPTQDHTGRPAYWWTPAIQAMIDNLSRKEQM 272 >tr:Q868S0_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1009 Score = 63.7 bits (154), Expect = 6e-11 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARR 54 T++E+L + AC+A+M + P + +WWT EI ALR C R Sbjct: 241 DTEVTTSEDLMRILVTACNATMTKRKRYT-PNKSAFWWTLEIEALRKECKHRDR 293 >tr:Q868S6_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1049 Score = 60.6 bits (146), Expect = 5e-10 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPS---PYPKRPVYWWTPEIAALRSACVAARRR 55 F A SA ++ ++T+A D +MPR P ++PVYWW I R+ CVAARR+ Sbjct: 240 FGEAVSASQIVIALTKASDGAMPRRKPPNGATSRRQPVYWWNASIKIQRAECVAARRK 297 >tr:Q868R8_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 988 Score = 60.2 bits (145), Expect = 7e-10 Identities = 26/55 (47%), Positives = 32/55 (58%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 F + EEL ++T ACD +MPR P +RPVYWWT EI LRS +RR Sbjct: 253 FGHVATPEELTQAITVACDGTMPRQPPRRQGRRPVYWWTSEIDRLRSHFYGMQRR 307 >tr:O46184_DROSU Reverse transcriptase (Fragment). Drosophila subobscura (Fruit fly). Length = 554 Score = 60.2 bits (145), Expect = 7e-10 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPK--RPVYWWTPEIAALRSACVAARRR 55 D L + T AC+ + PS P+ + WW+ I LR C R Sbjct: 264 PDTQDDFNRLVDNFTEACNKAFMAACPSTKPRGKKKPPWWSKHIDTLRKDCRTLFNR 320 >tr:Q9BLH9_SAMCY TRASSc4 protein (Fragment). Samia cynthia (Cynthia moth) (Ailanthus silkmoth). Length = 640 Score = 59.8 bits (144), Expect = 8e-10 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSP--YPKRPVYWWTPEIAALRSACVAARRR 55 + + E+ +T+AC ++P++ + K + WWT E+ + + +RR Sbjct: 215 QELDSIIEKYNNIITQACKLNIPKINRNTTNKQKNNLPWWTVELEEEKRRVLTMKRR 271 >tr:Q5TRT7_ANOGA ENSANGP00000026577 (Fragment). Anopheles gambiae str. PEST. Length = 267 Score = 59.5 bits (143), Expect = 1e-09 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPS--PYPKRPVYWWTPEIAALRSACVAARRR 55 F A SA ++ ++T+A D +MPR P ++PVYWW I R+ CVAARR+ Sbjct: 47 FGEAVSASQIVIALTKASDGAMPRRKPPNGTSRRQPVYWWNASIKIQRAECVAARRK 103 >tr:O46179_DROSU Non-LTR retrotransposon reverse transcriptase (Fragment). Drosophila subobscura (Fruit fly). Length = 279 Score = 59.1 bits (142), Expect = 1e-09 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPK--RPVYWWTPEIAALRSACVAARRR 55 D L T AC+ + PS P+ + WW+ IA LR C R Sbjct: 109 PDTQDDLNRLVDDFTEACNKAFMAACPSTKPRGKKKPPWWSKHIATLRKDCRTLFNR 165 >tr:Q7Q8Q1_ANOGA ENSANGP00000018097. Anopheles gambiae str. PEST. Length = 629 Score = 58.3 bits (140), Expect = 2e-09 Identities = 25/54 (46%), Positives = 30/54 (55%) Query: 2 DRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 DR A L ++T+ACDA+M R+G S VYWWTP I L C AR R Sbjct: 410 DRIFDAASLGRALTQACDATMARIGHSQRKSCNVYWWTPAIGELTERCRLARER 463 >tr:Q868R0_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1173 Score = 57.1 bits (137), Expect = 5e-09 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 1 FDRATSAEELRASMTRACDASMPRV---GPSPYPKRPVYWWTPEIAALRSACVAAR 53 + A + E L+ +++RACD +M RV P K VYWWTPE A LR C A Sbjct: 271 AEIARTPETLQVALSRACDVAMERVSSSTPYYQTKPQVYWWTPERAQLRELCKEAS 326 >tr:Q7PGS5_ANOGA ENSANGP00000023029. Anopheles gambiae str. PEST. Length = 700 Score = 56.4 bits (135), Expect = 8e-09 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 2 DRATSAEELRASMTRACDASMPRVGPSPY-PKRPVYWWTPEIAALRSACVAARRR 55 + S E L S+T CD +M RV P RP YWWTP I A+ + Sbjct: 366 RQVNSVESLVESLTSVCDETMSRVFPVQDHTGRPAYWWTPAIQAMIDNHSRKEQM 420 >tr:Q5TT30_ANOGA ENSANGP00000026169 (Fragment). Anopheles gambiae str. PEST. Length = 100 Score = 56.0 bits (134), Expect = 1e-08 Identities = 21/45 (46%), Positives = 28/45 (62%) Query: 11 RASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 ++ ACD S+ R PYP++ YWWT EIA RS C+ ARR+ Sbjct: 1 VPAIANACDTSVLRRKGGPYPRQRAYWWTTEIAQCRSHCIEARRK 45 >tr:Q9BLI3_BOMMO TRAS5 protein (Fragment). Bombyx mori (Silk moth). Length = 656 Score = 50.6 bits (120), Expect = 6e-07 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 2 DRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 D ++ ++T AC SMP + K + WW+ E+A L+ +RR Sbjct: 236 DIDDITDKYIKAITEACTESMPLKKKTE--KLTLPWWSEELARLKKEVSTLKRR 287 >tr:Q9BLI1_9NEOP TRASDJ protein (Fragment). Saturnia japonica. Length = 614 Score = 44.4 bits (104), Expect = 4e-05 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 + + E A +T ACD +P+ PK + WW+ E+ + + +RR Sbjct: 193 EELDNTINEYDAVVTEACDEVLPKFK--CRPKLKIPWWSKELEVKKKRTLTLKRR 245 >tr:Q9BLH8_SAMCY TRASSc9 protein (Fragment). Samia cynthia (Cynthia moth) (Ailanthus silkmoth). Length = 636 Score = 44.0 bits (103), Expect = 4e-05 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 D + + +++ AC ++P+ P WW ++ L+ + +RR Sbjct: 214 EDLEIAIQAYTSAIHEACSTTIPQARPW-KGNPVPPWWNRQLEDLKREVLRRKRR 267 >tr:Q9BLI4_BOMMO TRAS4 protein (Fragment). Bombyx mori (Silk moth). Length = 653 Score = 44.0 bits (103), Expect = 5e-05 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 5 TSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 + L S+T AC SMP + + WW+ E+A L+ +RR Sbjct: 234 NTTLGLTKSITDACVESMPIKKSNET--LTLPWWSEELADLKRNVATKKRR 282 >tr:Q9BLI5_BOMMO TRAS3 protein. Bombyx mori (Silk moth). Length = 1682 Score = 43.7 bits (102), Expect = 6e-05 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Query: 8 EELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 + + C+ ++P+ K + WW+ E+AA++ +RR Sbjct: 747 NKYTNIIKTVCNQTIPKKK--TQEKFTLPWWSDELAAMKREVATRKRR 792 >tr:Q6IGW7_DROME HDC04700. Drosophila melanogaster (Fruit fly). Length = 339 Score = 41.7 bits (97), Expect = 2e-04 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 2 DRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSAC 49 D +SA +L + + C+A+M R VYWW+ ++ LRS C Sbjct: 248 DAESSAADLMNMLGKTCEATMRRKKKVRRK-PHVYWWSATLSQLRSDC 294 >tr:Q9BLI0_SAMCY TRASSc3 protein (Fragment). Samia cynthia (Cynthia moth) (Ailanthus silkmoth). Length = 641 Score = 40.6 bits (94), Expect = 5e-04 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 T + + AC+ +P+ G RP WW+ ++ L+ +RR Sbjct: 215 EGLETVVSDYVICIEEACNKVVPKAGGVKKVARP-PWWSEDLDRLKREATRRKRR 268 >tr:O44313_DROMR Reverse transcriptase (Fragment). Drosophila mercatorum mercatorum. Length = 664 Score = 40.6 bits (94), Expect = 6e-04 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYP-KRPVYWWTPEIAA 44 F TS E++ A + S G KR V WWT + Sbjct: 269 FRAMTSDEQVTALRSLVHQVSDAVFGRQQLRAKRRVSWWTAALTD 313 >tr:Q9U4W1_AEDAE Pol-like protein. Aedes aegypti (Yellowfever mosquito). Length = 1208 Score = 40.2 bits (93), Expect = 6e-04 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Query: 5 TSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPE----IAALRSACVAARR 54 + E + + +A S+PR P+P +R + WW+P+ I R A AA+R Sbjct: 256 DNIEGFLSVLHQAASTSIPRTTPNP-GRRSLPWWSPDIKKVIKERRKALRAAKR 308 >tr:O18558_AEDAE Lian-Aa1 retrotransposon protein. Aedes aegypti (Yellowfever mosquito). Length = 1189 Score = 39.0 bits (90), Expect = 0.002 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 8/55 (14%) Query: 3 RATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAA--RRR 55 T+ + + AC S R WW ++ LR C + RRR Sbjct: 251 VDTTTSYIMEAFEEACPL------RSVKTTRGTPWWNSDLTRLRKQCRRSWNRRR 299 >tr:Q93139_BOMMO ORF2. Bombyx mori (Silk moth). Length = 1162 Score = 37.9 bits (87), Expect = 0.003 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 3 RATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 ++ +T+ C+ S+P+ + WW+ ++A +R RRR Sbjct: 233 VESAINTYTNIITKTCEQSIPKKTSREI--LTIPWWSEKLAEMRKETNTMRRR 283 >tr:Q24363_DROME Putative ORF2. Drosophila melanogaster (Fruit fly). Length = 1219 Score = 36.3 bits (83), Expect = 0.010 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 7 AEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSA 48 A + + + + S+P+ P+ +P R V WW + LR Sbjct: 258 AALINRIILYSANLSIPQTSPNTHPYR-VPWWNKHLDQLRKE 298 >tr:Q7PVA9_ANOGA ENSANGP00000013352 (Fragment). Anopheles gambiae str. PEST. Length = 1215 Score = 35.2 bits (80), Expect = 0.021 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 10 LRASMTRACDASMPRVGPSPYPKRPVYWWTPEIA-ALRSACVAARRR 55 + A +S+PR P++ V WW E+A A+++ RRR Sbjct: 263 FANIILEAATSSIPRTNG-TLPRKYVPWWNKEVAIAIKNRRKHLRRR 308 >tr:Q9BLI2_BOMMO TRAS6 protein (Fragment). Bombyx mori (Silk moth). Length = 636 Score = 34.8 bits (79), Expect = 0.026 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 2/55 (3%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 + L ++ C S+P K + WW+ ++A ++ +RR Sbjct: 215 EQLEKTINTLTKTIDNTCTISIPIK--QTKEKLTLPWWSEKLAGMKKEVATRKRR 267 >tr:Q5TP69_ANOGA ENSANGP00000027917. Anopheles gambiae str. PEST. Length = 422 Score = 34.8 bits (79), Expect = 0.026 Identities = 15/25 (60%), Positives = 16/25 (64%) Query: 30 YPKRPVYWWTPEIAALRSACVAARR 54 Y RP YWWTPEIA L AC A + Sbjct: 326 YTGRPAYWWTPEIANLVEACREADQ 350 >tr:Q9YGS2_FUGRU Reverse transcriptase-like protein. Fugu rubripes (Japanese pufferfish) (Takifugu rubripes). Length = 1027 Score = 33.3 bits (75), Expect = 0.082 Identities = 10/55 (18%), Positives = 18/55 (32%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 + + AE S+ D+ P +R W+ I L+ R+ Sbjct: 336 AEVDSIAEGAATSLRITLDSVAPLKKKIVNQRRCAPWYNSHIRTLKQKVRRLERK 390 >tr:Q9GP60_DROME Pol protein. Drosophila melanogaster (Fruit fly). Length = 1227 Score = 31.0 bits (69), Expect = 0.40 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 3/42 (7%) Query: 7 AEELRASMTRACDASMPRVGPS-PYPKRPVYWWTPEIAALRS 47 ++ + A + S+P+ K V WW + LR Sbjct: 262 VAQMTKVIRSAANYSIPQTKRVIHKAK--VPWWNANLQQLRD 301 Database: /export/scratch/database/MYHITS2/tr.66 Posted date: Jun 13, 2005 6:40 PM Number of letters in database: 567,248,508 Number of sequences in database: 1,779,481 Lambda K H 0.311 0.158 0.499 Lambda K H 0.267 0.0487 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,404,593 Number of Sequences: 1779481 Number of extensions: 2241555 Number of successful extensions: 8283 Number of sequences better than 1.0: 60 Number of HSP's better than 1.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 8190 Number of HSP's gapped (non-prelim): 64 length of query: 55 length of database: 16,252,624 effective HSP length: 4 effective length of query: 51 effective length of database: 16,252,624 effective search space: 828883824 effective search space used: 828883824 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 66 (29.8 bits)