SIB BLAST network server version 1.6 of November 26, 2002 compiled by GNU C version 3.2.3 20030502 (Red Hat Linux 3.2.3-49) compiled on Feb 1 2005. Welcome to the SIB BLAST Network Service (noko01) ============================================================================== Swiss Institute of Bioinformatics (SIB) Ludwig Institute for Cancer Research (LICR) Swiss Institute for Experimental Cancer Research (ISREC) ============================================================================== If results of this search are reported or published, please mention that the computation was performed at the SIB using the BLAST network service. PEPTIDE SEQUENCE DATABASES swiss SwissProt + updates 14-Jul-2004 swisstrembl SwissProt+Trembl+TrUpdates 14-Jul-2004 nr Non-redundant SP+Trembl+TrUpdates+gp 14-Jul-2004 shuffled SwissProt r30 shuffled in windows of 20 aa yeast S.cerevisiae translated genome ORFs NUCLEOTIDE SEQUENCE DATABASES embre * EMBL Data Library, Release 79, June 2004 embu * EmblUpdate 14-Jul-2004 embl * EMBL+EmblUpdate 14-Jul-2004 nr * Synonym to embl (and actually redundant). 14-Jul-2004 EST Database of Expressed Sequence Tags 14-Jul-2004 GSS Genome Survey Sequences 14-Jul-2004 HTG High-thruput Genomic Sequences 14-Jul-2004 STS Database of Sequence Tagged Sites 14-Jul-2004 repbase Repbase, August 04, 2002 simple Simple sequence repeats (J. Mol. Evol. 40:120, 1995) yeast S.cerevisiae genome worm C.elegans genome * The est, gss, htg, and sts divisions of EMBL are excluded from these databases. ============================================================================ The BLAST Network Service uses a server developed at SIB and the NCBI BLAST 2 software. For problems regarding this site, please contact one of the following persons: - problems with the programs: Christian Iseli (Christian.Iseli@licr.org) Giovanna Ambrosini (giovanna.ambrosini@isb-sib.ch) - problems with the databases: Victor Jongeneel (Victor.Jongeneel@isb-sib.ch) Laurent Falquet (Laurent.Falquet@isrec.unil.ch) ============================================================================ BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= consensus (258 letters) Database: /export/scratch/database/MYHITS2/sw.69 184,304 sequences; 66,619,967 total letters [blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file [blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sw:RENT1_NEUCR Regulator of nonsense transcripts 1 homolog. Neur... 308 4e-84 sw:NAM7_YEAST NAM7 protein ((Nuclear accomodation of mitochondri... 296 2e-80 sw:RENT1_ARATH Regulator of nonsense transcripts 1 homolog. Arab... 289 2e-78 sw:RENT1_SCHPO Regulator of nonsense transcripts 1 homolog. Schi... 277 1e-74 sw:SMBP2_MESAU DNA-binding protein SMUBP-2 (Immunoglobulin mu bi... 274 6e-74 sw:SMBP2_HUMAN DNA-binding protein SMUBP-2 (Immunoglobulin mu bi... 274 8e-74 sw:RENT1_MOUSE Regulator of nonsense transcripts 1 (Nonsense mRN... 274 9e-74 sw:RENT1_HUMAN Regulator of nonsense transcripts 1 (Nonsense mRN... 274 9e-74 sw:RENT1_DROME Regulator of nonsense transcripts 1 homolog. Dros... 273 1e-73 sw:SMBP2_MOUSE DNA-binding protein SMUBP-2 (Immunoglobulin mu bi... 268 3e-72 sw:RENT1_CAEEL Regulator of nonsense transcripts 1 (Nonsense mRN... 257 7e-69 sw:K1404_HUMAN Protein KIAA1404. Homo sapiens (Human). 256 2e-68 sw:RENT1_FUGRU Putative regulator of nonsense transcripts 1. Fug... 238 6e-63 sw:DNA2_YEAST DNA replication helicase DNA2. Saccharomyces cerev... 228 5e-60 sw:DNA2_SCHPO DNA replication helicase dna2. Schizosaccharomyces... 227 1e-59 sw:YKB7_YEAST Hypothetical 78.3 kDa protein in RAM2-ATP7 interge... 215 5e-56 sw:Y104_METJA Hypothetical ATP-binding protein MJ0104. Methanoco... 209 2e-54 sw:SEN1_YEAST Helicase SEN1 (EC 3.6.1.-) (tRNA-splicing endonucl... 208 4e-54 sw:SEN1_SCHPO Helicase sen1 (EC 3.6.1.-) (Endonuclease sen1). Sc... 208 5e-54 sw:DNA2L_HUMAN DNA2-like homolog (DNA replication helicase-like ... 206 2e-53 sw:M10L1_HUMAN Potential helicase Mov10l1 (EC 3.6.1.-) (Moloney ... 205 6e-53 sw:SETX_HUMAN Probable helicase senataxin (EC 3.6.1.-) (SEN1 hom... 200 1e-51 sw:M10L1_MOUSE Potential helicase Mov10l1 (EC 3.6.1.-) (Moloney ... 197 1e-50 sw:SDE3_ARATH Probable RNA helicase SDE3 (EC 3.6.1.-) (Silencing... 190 1e-48 sw:HELZ_HUMAN Potential helicase with zinc-finger domain. Homo s... 178 4e-45 sw:MOV10_MOUSE Potential helicase MOV-10 (EC 3.6.1.-) (Moloney l... 176 3e-44 sw:ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 (EC 3.6... 173 2e-43 sw:MOV10_HUMAN Potential helicase MOV-10 (EC 3.6.1.-) (Moloney l... 172 4e-43 sw:PR285_HUMAN Peroxisomal proliferator-activated receptor A int... 170 2e-42 sw:ARMI_DROME Probable RNA helicase armi (EC 3.6.1.-) (Armitage ... 151 8e-37 sw:YQ12_CAEEL Hypothetical protein C05C10.2 in chromosome II. Ca... 122 4e-28 sw:Y153_MYCPN Hypothetical ATP-binding protein MG140 homolog (E0... 107 8e-24 sw:Y140_MYCGE Hypothetical ATP-binding protein MG140. Mycoplasma... 104 1e-22 sw:CWF11_SCHPO Cell cycle control protein cwf11. Schizosaccharom... 97 2e-20 sw:R1AB_CVBM Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprote... 73 5e-13 sw:R1AB_CVPPU Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprot... 72 6e-13 sw:R1AB_CVBQ Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprote... 71 1e-12 sw:R1AB_CVBLU Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprot... 71 1e-12 sw:R1AB_CVBEN Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprot... 71 1e-12 sw:R1AB_CVMA5 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprot... 69 3e-12 sw:R1AB_CVM2 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprote... 68 7e-12 sw:R1AB_PEDV7 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprot... 68 9e-12 sw:R1AB_CVH22 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprot... 66 4e-11 sw:R1AB_CVMJH Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprot... 62 7e-10 sw:R1AB_IBVBC Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprot... 61 2e-09 sw:R1AB_IBVB Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprote... 61 2e-09 sw:R1AB_CVHSA Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includ... 56 6e-08 sw:YJHR_ECOLI Hypothetical protein yjhR. Escherichia coli. 54 2e-07 sw:R1AB_BEV Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotei... 47 2e-05 sw:HMI1_YEAST ATP-dependent DNA helicase HMI1, mitochondrial pre... 47 2e-05 sw:EX5A_BUCAP Exodeoxyribonuclease V alpha chain (EC 3.1.11.5). ... 45 8e-05 sw:PCRA_BACSU ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Baci... 43 3e-04 sw:PCRA_STAEP ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Stap... 42 6e-04 sw:POLN_SFV Nonstructural polyprotein (Polyprotein nsP1234) [Con... 41 0.001 sw:PCRA_STAAR ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Stap... 41 0.001 sw:PCRA_STAAW ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Stap... 41 0.002 sw:PCRA_STAAS ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Stap... 41 0.002 sw:PCRA_STAAN ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Stap... 41 0.002 sw:PCRA_STAAM ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Stap... 41 0.002 sw:PCRA_STAAU ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Stap... 41 0.002 sw:EX5A_BUCAI Exodeoxyribonuclease V alpha chain (EC 3.1.11.5). ... 39 0.005 sw:POLN_SINDO Nonstructural polyprotein (P270) [Contains: Nonstr... 39 0.006 sw:POLN_ONNVG Nonstructural polyprotein [Contains: Nonstructural... 39 0.006 sw:UVRD_MYCTU Probable DNA helicase II homolog (EC 3.6.1.-). Myc... 38 0.009 sw:UVRD_MYCBO Probable DNA helicase II homolog (EC 3.6.1.-). Myc... 38 0.009 sw:POLN_RRVN Nonstructural polyprotein [Contains: Nonstructural ... 38 0.010 sw:PCRA_LEUCI ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Leuc... 38 0.011 sw:POLN_SINDV Nonstructural polyprotein (P270) [Contains: Nonstr... 38 0.012 sw:EX5B_CHLMU Exodeoxyribonuclease V beta chain (EC 3.1.11.5). C... 37 0.015 sw:RPOA_LDVP Replicase polyprotein 1ab (ORF1ab polyprotein) [Inc... 37 0.020 sw:TRAA_AGRT5 Conjugal transfer protein traA. Agrobacterium tume... 36 0.040 sw:VGL2_CVBQ E2 glycoprotein precursor (Spike glycoprotein) (Pep... 36 0.063 sw:VGL2_CVBM E2 glycoprotein precursor (Spike glycoprotein) (Pep... 36 0.064 sw:RPOA_PRRSL Replicase polyprotein 1ab (ORF1ab polyprotein) [In... 35 0.069 sw:EX5B_CHLTR Exodeoxyribonuclease V beta chain (EC 3.1.11.5). C... 35 0.092 sw:EX5A_BUCBP Exodeoxyribonuclease V alpha chain (EC 3.1.11.5). ... 34 0.14 sw:TRAA_RHISN Probable conjugal transfer protein traA. Rhizobium... 34 0.14 sw:CYSC_BUCAI Adenylyl-sulfate kinase (EC 2.7.1.25) (APS kinase)... 34 0.15 sw:VGL2_CVHOC E2 glycoprotein precursor (Spike glycoprotein) (Pe... 34 0.17 sw:ACDG2_METTE Acetyl-CoA decarbonylase/synthase complex gamma s... 34 0.17 sw:Y1519_METJA Hypothetical protein MJ1519. Methanococcus jannas... 34 0.19 sw:RPOA_LDVC Replicase polyprotein 1ab (ORF1ab polyprotein) [Inc... 34 0.20 sw:EX5A_HAEIN Exodeoxyribonuclease V alpha chain (EC 3.1.11.5). ... 34 0.22 sw:FBX18_HUMAN F-box only protein 18 (EC 3.6.1.-) (F-box DNA hel... 34 0.24 sw:VGL2_CVBV E2 glycoprotein precursor (Spike glycoprotein) (Pep... 33 0.28 sw:VGL2_CVBL9 E2 glycoprotein precursor (Spike glycoprotein) (Pe... 33 0.28 sw:FBX18_MOUSE F-box only protein 18 (EC 3.6.1.-) (F-box DNA hel... 33 0.28 sw:TRAA_AGRTU Conjugal transfer protein traA. Agrobacterium tume... 33 0.33 sw:VGL2_CVBLY E2 glycoprotein precursor (Spike glycoprotein) (Pe... 33 0.37 sw:VGL2_CVBF E2 glycoprotein precursor (Spike glycoprotein) (Pep... 33 0.37 sw:EX5B_ECOLI Exodeoxyribonuclease V beta chain (EC 3.1.11.5) (E... 32 0.58 sw:UVRD_HAEIN DNA helicase II (EC 3.6.1.-). Haemophilus influenzae. 32 0.78 >sw:RENT1_NEUCR Regulator of nonsense transcripts 1 homolog. Neurospora crassa. Length = 1093 Score = 308 bits (790), Expect = 4e-84 Identities = 136/263 (51%), Positives = 163/263 (61%), Gaps = 15/263 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A VV TC GA R L K KF V+IDE+ Q+ E EC+IPL+L K+ +LVGDHK Sbjct: 594 NADVVCCTCVGAGDPR----LSKMKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHK 649 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P I +KKAA KAGL +SLFERLV+L + +RL VQYRMHP + PSN+FYEG L Sbjct: 650 QLGPVIMNKKAA-KAGLNQSLFERLVKLQFTPIRLKVQYRMHPCLSEFPSNMFYEG-SLQ 707 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + + A RL D FP P P+ F N G EE G SY N EA V +IV Sbjct: 708 NGVTAAERLRKDV----DFPWPVPETPMMFWSNLGNEEISASGTSYLNRTEAANVEKIVT 763 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRC-----SLKPVEVSTVDSFQGREKDIII 235 ++GV P DIGVITPY GQ I N + + S + VEV++VD+FQGREKD I+ Sbjct: 764 RFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIV 823 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VRSN N IGFL D RRLNV Sbjct: 824 LSCVRSNENQGIGFLSDPRRLNV 846 >sw:NAM7_YEAST NAM7 protein ((Nuclear accomodation of mitochondria 7 protein) Nonsense-mediated mRNA decay protein 1) (Up-frameshift suppressor 1). Saccharomyces cerevisiae (Baker's yeast). Length = 971 Score = 296 bits (758), Expect = 2e-80 Identities = 129/263 (49%), Positives = 158/263 (60%), Gaps = 16/263 (6%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A VV TC GA KR KF V+IDE+ QA E ECLIP++ K+ ILVGDH+ Sbjct: 546 KADVVCCTCVGAGDKR-----LDTKFRTVLIDESTQASEPECLIPIVKGAKQVILVGDHQ 600 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P I +KAA AGL++SLFERL+ LG +RL VQYRM+P + PSN+FYEG L Sbjct: 601 QLGPVILERKAA-DAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEG-SLQ 658 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + ++ +R +S FP P +P+ F N G EE G S+ N EA I+ Sbjct: 659 NGVTIEQRTVPNS----KFPWPIRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIIT 714 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-----PVEVSTVDSFQGREKDIII 235 L R GV PE IGVITPY GQ I + SL VEV++VD+FQGREKD II Sbjct: 715 KLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYII 774 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VR+N IGFLRD RRLNV Sbjct: 775 LSCVRANEQQAIGFLRDPRRLNV 797 >sw:RENT1_ARATH Regulator of nonsense transcripts 1 homolog. Arabidopsis thaliana (Mouse-ear cress). Length = 1235 Score = 289 bits (740), Expect = 2e-78 Identities = 133/263 (50%), Positives = 156/263 (59%), Gaps = 15/263 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ TC GAA R L F+F V+IDE+ QA E ECLIPL+L K+ +LVGDH Sbjct: 626 SADVICCTCVGAADLR----LSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHC 681 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P I KKAA AGL +SLFERLV LG+ +RL VQYRMHP + PSN FYEG L Sbjct: 682 QLGPVIMCKKAAR-AGLAQSLFERLVTLGIKPIRLQVQYRMHPALSEFPSNSFYEGT-LQ 739 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + ++ R FP P P+ F G EE G SY N EA V ++V Sbjct: 740 NGVTIIER----QTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANVEKLVT 795 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS-----LKPVEVSTVDSFQGREKDIII 235 L+SGV P IGVITPY GQ I N + S K +EV++VDSFQGREKD II Sbjct: 796 AFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYII 855 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VRSN + IGFL D RRLNV Sbjct: 856 LSCVRSNEHQGIGFLNDPRRLNV 878 >sw:RENT1_SCHPO Regulator of nonsense transcripts 1 homolog. Schizosaccharomyces pombe (Fission yeast). Length = 925 Score = 277 bits (708), Expect = 1e-74 Identities = 127/262 (48%), Positives = 159/262 (60%), Gaps = 15/262 (5%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 A V+ TC GA +R + K+KF V+IDEA QA E EC+IPL+L K+ +LVGDH+Q Sbjct: 538 AHVICCTCVGAGDRR----ISKYKFRSVLIDEATQASEPECMIPLVLGAKQVVLVGDHQQ 593 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVD 121 L P + +KK A A L +SLFERL+ LG S RL VQYRMHP + PSN FYEG L + Sbjct: 594 LGPVVMNKKVA-LASLSQSLFERLIILGNSPFRLVVQYRMHPCLSEFPSNTFYEGT-LQN 651 Query: 122 ISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 + + R+ A FP Q PL F N G EE G S+ N EA +IV Sbjct: 652 GVTTSERI----ARHVDFPWIQPDSPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTT 707 Query: 182 LLRSGVPPEDIGVITPYNGQVELIRNILNSRCS-----LKPVEVSTVDSFQGREKDIIIL 236 LRS V PE IG++TPY+GQ I + + S K VEV++VD+FQGREKD IIL Sbjct: 708 FLRSNVLPEQIGIVTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIIL 767 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 S VRS+ + IGF+ D RRLNV Sbjct: 768 SCVRSSEHQGIGFVNDPRRLNV 789 >sw:SMBP2_MESAU DNA-binding protein SMUBP-2 (Immunoglobulin mu binding protein 2) (SMUBP-2) (Insulin II gene enhancer-binding protein) (RIPE3B-binding complex 3B2 p110 subunit) (RIP-1). Mesocricetus auratus (Golden hamster). Length = 989 Score = 274 bits (702), Expect = 6e-74 Identities = 126/262 (48%), Positives = 155/262 (59%), Gaps = 12/262 (4%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 A VV T TGA+S L + FDVV++DE AQALEA C IPLL A K IL GDH+Q Sbjct: 344 ADVVLATNTGASSDGPLKLLPENHFDVVVVDECAQALEASCWIPLLKAP-KCILAGDHRQ 402 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 LPPT S KAA AGL SL ERLVE +V L VQYRMH I R S Y G L Sbjct: 403 LPPTTISHKAA-LAGLSRSLMERLVEKHGAGAVRMLTVQYRMHQAITRWASEAMYHGQ-L 460 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY---SYQNPGEAEFVV 176 SVA L D PG T + VPL +D +G E + S NPGE V Sbjct: 461 TAHPSVAGHLLKD--LPGVADTEETSVPLLLIDTAGCGLLELDEEDSQSKGNPGEVRLVT 518 Query: 177 EIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIIL 236 ++ L+ +GV DI VI PYN QV+L+R L+++ +E+ +VD FQGREK+ +IL Sbjct: 519 LHIQALVDAGVHAGDIAVIAPYNLQVDLLRQSLSNK--HPELEIKSVDGFQGREKEAVIL 576 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 + VRSNR GE+GFL ++RR+NV Sbjct: 577 TFVRSNRKGEVGFLAEDRRINV 598 >sw:SMBP2_HUMAN DNA-binding protein SMUBP-2 (Immunoglobulin mu binding protein 2) (SMUBP-2) (Glial factor-1) (GF-1). Homo sapiens (Human). Length = 993 Score = 274 bits (701), Expect = 8e-74 Identities = 131/263 (49%), Positives = 157/263 (59%), Gaps = 12/263 (4%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A VV T TGA++ L + FDVV+IDE AQALEA C IPLL A +K IL GDHK Sbjct: 344 SANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKA-RKCILAGDHK 402 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGV--SVVRLNVQYRMHPEICRLPSNLFYEGNG 118 QLPPT S KAA AGL SL ERL E V L VQYRMH I R S+ Y G Sbjct: 403 QLPPTTVSHKAA-LAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQ- 460 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY---SYQNPGEAEFV 175 + SSVAR L D PG T + VPL VD +G E E S NPGE V Sbjct: 461 VTAHSSVARHLLRD--LPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLV 518 Query: 176 VEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIII 235 ++ L+ +GVP DI V++PYN QV+L+R L R +E+ +VD FQGREK+ +I Sbjct: 519 SLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHR--HPELEIKSVDGFQGREKEAVI 576 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VRSNR GE+GFL ++RR+NV Sbjct: 577 LSFVRSNRKGEVGFLAEDRRINV 599 >sw:RENT1_MOUSE Regulator of nonsense transcripts 1 (Nonsense mRNA reducing factor 1) (NORF1) (Up-frameshift suppressor 1 homolog) (mUpf1). Mus musculus (Mouse). Length = 1113 Score = 274 bits (701), Expect = 9e-74 Identities = 124/263 (47%), Positives = 158/263 (60%), Gaps = 15/263 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ TC GA R L K +F ++IDE+ QA E EC++P++L K+ ILVGDH Sbjct: 604 NADVICCTCVGAGDPR----LAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHC 659 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P + KKAA KAGL +SLFERLV LG+ +RL VQYRMHP + PSN+FYEG L Sbjct: 660 QLGPVVMCKKAA-KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEG-SLQ 717 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + + A R++ F PQ P+ F G EE G SY N EA V +I Sbjct: 718 NGVTAADRVKKGF----DFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT 773 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-----PVEVSTVDSFQGREKDIII 235 LL++G P+ IG+ITPY GQ + + SL VE+++VD+FQGREKD II Sbjct: 774 KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII 833 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VR+N + IGFL D RRLNV Sbjct: 834 LSCVRANEHQGIGFLNDPRRLNV 856 >sw:RENT1_HUMAN Regulator of nonsense transcripts 1 (Nonsense mRNA reducing factor 1) (NORF1) (Up-frameshift suppressor 1 homolog) (hUpf1). Homo sapiens (Human). Length = 1129 Score = 274 bits (701), Expect = 9e-74 Identities = 124/263 (47%), Positives = 158/263 (60%), Gaps = 15/263 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ TC GA R L K +F ++IDE+ QA E EC++P++L K+ ILVGDH Sbjct: 620 NADVICCTCVGAGDPR----LAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHC 675 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P + KKAA KAGL +SLFERLV LG+ +RL VQYRMHP + PSN+FYEG L Sbjct: 676 QLGPVVMCKKAA-KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEG-SLQ 733 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + + A R++ F PQ P+ F G EE G SY N EA V +I Sbjct: 734 NGVTAADRVKKGF----DFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT 789 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-----PVEVSTVDSFQGREKDIII 235 LL++G P+ IG+ITPY GQ + + SL VE+++VD+FQGREKD II Sbjct: 790 KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII 849 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VR+N + IGFL D RRLNV Sbjct: 850 LSCVRANEHQGIGFLNDPRRLNV 872 >sw:RENT1_DROME Regulator of nonsense transcripts 1 homolog. Drosophila melanogaster (Fruit fly). Length = 1180 Score = 273 bits (699), Expect = 1e-73 Identities = 122/262 (46%), Positives = 156/262 (59%), Gaps = 16/262 (6%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 A V+ TC GA R L + KF ++IDE+ Q+ E EC++P++L K+ ILVGDH Q Sbjct: 591 ADVICCTCVGAGDGR----LSRVKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQ 646 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVD 121 L P + KKAA AGL +SLFERLV LG+ RL VQYRMHPE+ + PSN FYEG L + Sbjct: 647 LGPVVMCKKAAR-AGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEG-SLQN 704 Query: 122 ISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 D FP PQ P+ F+ G EE G S+ N EA V +I Sbjct: 705 G-----VCAEDRRLKLDFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTR 759 Query: 182 LLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-----PVEVSTVDSFQGREKDIIIL 236 L++G+ PE IG+ITPY GQ + + + SL +E+++VD+FQGREKDIII+ Sbjct: 760 FLKAGIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIM 819 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 S VRSN IGFL D RRLNV Sbjct: 820 SCVRSNERQGIGFLNDPRRLNV 841 >sw:SMBP2_MOUSE DNA-binding protein SMUBP-2 (Immunoglobulin mu binding protein 2) (SMUBP-2) (Cardiac transcription factor 1) (CATF1). Mus musculus (Mouse). Length = 993 Score = 268 bits (687), Expect = 3e-72 Identities = 122/262 (46%), Positives = 151/262 (57%), Gaps = 12/262 (4%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 A VV T TGA+S L + FDVV++DE AQALEA C IPLL A K IL GDH+Q Sbjct: 344 ADVVLATNTGASSDGPLKLLPEDYFDVVVVDECAQALEASCWIPLLKAP-KCILAGDHRQ 402 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 LPPT S +AA AGL SL ERL E V L VQYRMH I S Y G Sbjct: 403 LPPTTVSHRAA-LAGLSRSLMERLAEKHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQ-F 460 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY---SYQNPGEAEFVV 176 SVA L D PG T + VPL +D +G E E S NPGE V Sbjct: 461 TSHPSVAGHLLKD--LPGVTDTEETRVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVT 518 Query: 177 EIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIIL 236 ++ L+ +GV DI VI PYN QV+L+R L+++ +E+ +VD FQGREK+ ++L Sbjct: 519 LHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNK--HPELEIKSVDGFQGREKEAVLL 576 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 + VRSNR GE+GFL ++RR+NV Sbjct: 577 TFVRSNRKGEVGFLAEDRRINV 598 >sw:RENT1_CAEEL Regulator of nonsense transcripts 1 (Nonsense mRNA reducing factor 1) (Up-frameshift suppressor 1 homolog). Caenorhabditis elegans. Length = 1069 Score = 257 bits (658), Expect = 7e-69 Identities = 113/262 (43%), Positives = 150/262 (57%), Gaps = 15/262 (5%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 A V+ TC+ AA R L K + V+IDE+ QA E E L+ ++ ++ +LVGDH Q Sbjct: 584 ADVICCTCSSAADAR----LSKIRTRTVLIDESTQATEPEILVSIMRGVRQLVLVGDHCQ 639 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVD 121 L P + KKAA AGL +SLFERLV LG+ RL VQYRMHP + PSN+FY+G+ Sbjct: 640 LGPVVICKKAAI-AGLSQSLFERLVLLGIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNG 698 Query: 122 ISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 ++ R + P+ P F SG EE G S+ N EA V ++V Sbjct: 699 VTENDRHMTGVDW-----HWPKPNKPAFFWHCSGSEELSASGTSFLNRTEAANVEKLVSK 753 Query: 182 LLRSGVPPEDIGVITPYNGQVELIRNIL-----NSRCSLKPVEVSTVDSFQGREKDIIIL 236 L+++GV P IGVIT Y GQ I N + + + VE+++VD+FQGREKD II+ Sbjct: 754 LIKAGVQPHQIGVITSYEGQRSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIV 813 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 + VRSN IGFL D RRLNV Sbjct: 814 TCVRSNDILGIGFLSDPRRLNV 835 >sw:K1404_HUMAN Protein KIAA1404. Homo sapiens (Human). Length = 1918 Score = 256 bits (654), Expect = 2e-68 Identities = 104/259 (40%), Positives = 148/259 (57%), Gaps = 17/259 (6%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A+VV MT TGAA R+ L +K + +VI++EAA+ LEA + L A + IL+GDH+ Sbjct: 977 DAQVVGMTTTGAAKYRQIL--QKVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQ 1034 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P+ A LE SLFERLV++ + VRLN Q+RM PEI RL + Y L Sbjct: 1035 QLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIY--QDLE 1092 Query: 121 DISSVARRLEYDS-ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 + SV + + ++ FF F E+E EG S+QN EA FVVE+ Sbjct: 1093 NHPSVLKYEKIKGVSSNLFFVEHNFP-----------EQEIQEGKSHQNQHEAHFVVELC 1141 Query: 180 EYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLV 239 +Y L P I ++T Y GQ+ +R ++ ++ + V V VD +QG E DII+LSLV Sbjct: 1142 KYFLCQEYLPSQITILTTYTGQLFCLRKLMPAK-TFAGVRVHVVDKYQGEENDIILLSLV 1200 Query: 240 RSNRNGEIGFLRDERRLNV 258 RSN+ G++GFL+ R+ V Sbjct: 1201 RSNQEGKVGFLQISNRICV 1219 >sw:RENT1_FUGRU Putative regulator of nonsense transcripts 1. Fugu rubripes (Japanese pufferfish) (Takifugu rubripes). Length = 1097 Score = 238 bits (607), Expect = 6e-63 Identities = 115/262 (43%), Positives = 149/262 (56%), Gaps = 15/262 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ TC A R L K +F ++IDE+ QA E +C+ P+ L K+ IL G+ Sbjct: 591 NADVIWCTCVRAGDPR----LAKMQFRSILIDESTQATEPKCIGPVELGAKQLIL-GEIT 645 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 + KKAA KAGL +SLFERLV LG+ +RL VQYRMHP + PSN+FYEG L Sbjct: 646 ASWSCVMCKKAA-KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEG-SLQ 703 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + + R++ F PQ P+ F G EE G SY N EA V +I Sbjct: 704 NGVTAGDRIKKGF----DFQWPQPEKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT 759 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK----PVEVSTVDSFQGREKDIIIL 236 LL++G P+ IG+ITPY GQ + + SL VE+++VD+FQGREKD IIL Sbjct: 760 RLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQVEIASVDAFQGREKDFIIL 819 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 S VR+N + IGFL D RRLNV Sbjct: 820 SCVRANEHQGIGFLNDPRRLNV 841 >sw:DNA2_YEAST DNA replication helicase DNA2. Saccharomyces cerevisiae (Baker's yeast). Length = 1522 Score = 228 bits (582), Expect = 5e-60 Identities = 103/276 (37%), Positives = 133/276 (48%), Gaps = 23/276 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 VVA TC G L + FD VI+DEA+Q L PL +FI+VGDH Sbjct: 1157 STSVVATTCLGINDILF--TLNEKDFDYVILDEASQISMPVALGPLRYGN-RFIMVGDHY 1213 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELG-VSVVRLNVQYRMHPEICRLPSNLFY----- 114 QLPP +K+ AA GLEESLF+ E SV L +QYRM +I L + L Y Sbjct: 1214 QLPPLVKN-DAARLGGLEESLFKTFCEKHPESVAELTLQYRMCGDIVTLSNFLIYDNKLK 1272 Query: 115 EGNGLVDISSVARRLEYD-----------SANPGFFPTPQFIVPLSFVDNSGVEEEEPEG 163 GN V S+ + P V DN E+ E Sbjct: 1273 CGNNEVFAQSLELPMPEALSRYRNESANSKQWLEDILEPTRKVVFLNYDNCPDIIEQSEK 1332 Query: 164 YSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTV 223 + N GEAE ++ VE +L SGVP EDIGV+T Y Q+ L++ I N +E+ T Sbjct: 1333 DNITNHGEAELTLQCVEGMLLSGVPCEDIGVMTLYRAQLRLLKKIFNKN-VYDGLEILTA 1391 Query: 224 DSFQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 D FQGR+K II+S+VR N G L++ RR+NV Sbjct: 1392 DQFQGRDKKCIIISMVRRNSQLNGGALLKELRRVNV 1427 >sw:DNA2_SCHPO DNA replication helicase dna2. Schizosaccharomyces pombe (Fission yeast). Length = 1398 Score = 227 bits (578), Expect = 1e-59 Identities = 88/274 (32%), Positives = 120/274 (43%), Gaps = 23/274 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 + C+ K KFD IIDEA+Q CL PL LA+ KF+LVGDH Sbjct: 1037 YEDPQIVACSSLGVYHSI--FNKRKFDYCIIDEASQIPLPICLGPLQLAE-KFVLVGDHY 1093 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN--- 117 QLPP +K+ + + + +V L +QYRM+ +I L S L Y GN Sbjct: 1094 QLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVTTLRLQYRMNEDINSLSSELIYGGNLVC 1153 Query: 118 --GLVDISSVARRLEYDS----------ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 + + + S P V D+ E Sbjct: 1154 GSKTISQKKLILPKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNTDDIL-GVESKTNNI 1212 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 +N EA + + V L GV IG+I+ Y QVEL+ L S +E++TVD Sbjct: 1213 LENHTEAFLIEQAVSSFLERGVKQSSIGIISIYKSQVELLSKNLKS---FTEIEINTVDR 1269 Query: 226 FQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 +QGR+KDII++S VRSN +G LRD RLNV Sbjct: 1270 YQGRDKDIILISFVRSNSKNLVGELLRDWHRLNV 1303 >sw:YKB7_YEAST Hypothetical 78.3 kDa protein in RAM2-ATP7 intergenic region. Saccharomyces cerevisiae (Baker's yeast). Length = 683 Score = 215 bits (547), Expect = 5e-56 Identities = 112/277 (40%), Positives = 155/277 (55%), Gaps = 21/277 (7%) Query: 2 AKVVAMTCTGAASKRKSLALEKFK-----FDVVIIDEAAQALEAECLIPLLLAKKKF--- 53 + +T +S R+ +L + FD +IIDE +QA+E +C IPL+ + +F Sbjct: 360 QSRIVVTTLHGSSSRELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKL 419 Query: 54 ILVGDHKQLPPTIKSKKAAAKA-GLEESLFERLVE---LGVSVVRLNVQYRMHPEICRLP 109 +L GD+KQLPPTIK++ LE +LF+R+++ V LNVQYRM+ +I P Sbjct: 420 VLAGDNKQLPPTIKTEDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFP 479 Query: 110 SNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFI---VPLSFVDNSGVEEEEPEGY-- 164 S+ Y G L D + VA RL D P+ +PL + D G E +E Sbjct: 480 SHSMYNGKLLADAT-VANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQGDEFQETADEAT 538 Query: 165 ---SYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVS 221 S N GE V E +E L VP IGVI+PYN QV ++ +++ L +E+S Sbjct: 539 ILGSKYNEGEIAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEIS 598 Query: 222 TVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 TVD FQGREKD+IILSLVRSN E+GFL++ERRLNV Sbjct: 599 TVDGFQGREKDVIILSLVRSNEKFEVGFLKEERRLNV 635 >sw:Y104_METJA Hypothetical ATP-binding protein MJ0104. Methanococcus jannaschii. Length = 663 Score = 209 bits (533), Expect = 2e-54 Identities = 96/263 (36%), Positives = 146/263 (55%), Gaps = 23/263 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 EA V+ T + A S+ L+ ++FDV++IDE +QA+E CLIP++ +K I+ GDHK Sbjct: 374 EADVIVATNSMAGSE----ILKGWEFDVIVIDEGSQAMEPSCLIPIVKG-RKLIMAGDHK 428 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN--- 117 QLPPT+ S+ K L E L ++ E L +QYRM+ +I P+ +FY Sbjct: 429 QLPPTVLSENEELKKTLFERLIKKYPEF---SSILEIQYRMNEKIMEFPNKMFYNNKLKA 485 Query: 118 --GLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFV 175 + +I+ + E + +P+ F++ G+E ++ E SY N EAE V Sbjct: 486 DESVKNITLLDLVKEEEIDEVD--RDIINEIPVQFINVEGIERKDKESPSYYNIEEAEKV 543 Query: 176 VEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIII 235 +EIV+ L++ +P VITPY+ QV +R + +EV+TVD FQGRE + I+ Sbjct: 544 LEIVKKLVKYKIPTN---VITPYDAQVRYLRRLFEEH--NIDIEVNTVDGFQGRENEAIV 598 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 +S VR+ GFL+D RRLNV Sbjct: 599 ISFVRTKNF---GFLKDLRRLNV 618 >sw:SEN1_YEAST Helicase SEN1 (EC 3.6.1.-) (tRNA-splicing endonuclease positive effector). Saccharomyces cerevisiae (Baker's yeast). Length = 2231 Score = 208 bits (531), Expect = 4e-54 Identities = 99/267 (37%), Positives = 138/267 (51%), Gaps = 24/267 (8%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 ++ T +G+A LA KFD VIIDEA Q E +IPL K+ I+VGD QL Sbjct: 1563 DIICSTLSGSAHD--VLATMGIKFDTVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQL 1620 Query: 63 PPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDI 122 PPT+ S AA+ +SLF R+ E S L+VQYRMHP I + PS+ FY+G L D Sbjct: 1621 PPTVLS-GAASNFKYNQSLFVRM-EKNSSPYLLDVQYRMHPSISKFPSSEFYQGR-LKDG 1677 Query: 123 SSVARRLEYDSANPGFFPTPQFIV--PLSFVD-NSGVEEEEPEGYSYQNPGEAEFVVEIV 179 P Q P F D SG +E+ + SY N E +E+V Sbjct: 1678 P--------GMDILNKRPWHQLEPLAPYKFFDIISGRQEQNAKTMSYTNMEEIRVAIELV 1729 Query: 180 EYLLRSGVPP----EDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGREKD 232 +YL R IG+I+PY Q++ +R K ++ +T+D FQG+EK+ Sbjct: 1730 DYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKE 1789 Query: 233 IIILSLVRSNRNG-EIGFLRDERRLNV 258 II++S VR++ +GFL+D RR+NV Sbjct: 1790 IILISCVRADDTKSSVGFLKDFRRMNV 1816 >sw:SEN1_SCHPO Helicase sen1 (EC 3.6.1.-) (Endonuclease sen1). Schizosaccharomyces pombe (Fission yeast). Length = 1687 Score = 208 bits (530), Expect = 5e-54 Identities = 102/267 (38%), Positives = 139/267 (52%), Gaps = 22/267 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A VV T +G+ +A F VIIDEAAQA+E + +IPL KK ILVGD Sbjct: 1349 QADVVCATLSGSGHDL--VAHSSLNFSTVIIDEAAQAVELDTIIPLRYGAKKCILVGDPN 1406 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVR--LNVQYRMHPEICRLPSNLFYEGNG 118 QLPPT+ SKKAA+ +SLF R ++ S L++QYRMHP+I PS FY+ Sbjct: 1407 QLPPTVLSKKAASL-NYSQSLFVR-IQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSR- 1463 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEI 178 L D ++A + + F + + +E S N E E++V + Sbjct: 1464 LEDGDNMAEKTQQVWHVNPKFTQYRLF-------DVRGKERTSNTMSTYNLEEVEYLVNM 1516 Query: 179 VEYLLRSGVPP----EDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGREK 231 V+ LL + P IGVITPY Q+ +R + + +++ TVD FQG+EK Sbjct: 1517 VDELL-NKFPDVNFTGRIGVITPYRSQLHELRRAFKVKYGKSFMSTIDIQTVDGFQGQEK 1575 Query: 232 DIIILSLVRSNRNGEIGFLRDERRLNV 258 DII S V+S IGFLRD RRLNV Sbjct: 1576 DIIFFSCVKSYSKHGIGFLRDFRRLNV 1602 >sw:DNA2L_HUMAN DNA2-like homolog (DNA replication helicase-like homolog) (Fragment). Homo sapiens (Human). Length = 1077 Score = 206 bits (526), Expect = 2e-53 Identities = 99/275 (36%), Positives = 147/275 (53%), Gaps = 30/275 (10%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 +VA TC G + FD I+DEA+Q + CL PL ++F+LVGDH+QLP Sbjct: 755 IVATTCMGINHP----IFSRKIFDFCIVDEASQISQPICLGPL-FFSRRFVLVGDHQQLP 809 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS 123 P + +++A A G+ ESLF+RL + +VV+L VQYRM+ +I L + L YEG Sbjct: 810 PLVLNREARAL-GMSESLFKRLEQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSD 868 Query: 124 SVARR-------------------LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY 164 VA + G F + L+ E+ E G Sbjct: 869 KVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGV 928 Query: 165 SYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVD 224 S N EA+ +V + +++G P DIG+I PY Q+++I ++L S+ VEV+TVD Sbjct: 929 S--NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLLAR--SIGMVEVNTVD 984 Query: 225 SFQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 +QGR+K I+++S VRSN++G +G L+D RRLNV Sbjct: 985 KYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNV 1019 >sw:M10L1_HUMAN Potential helicase Mov10l1 (EC 3.6.1.-) (Moloney leukemia virus 10- like protein 1) (MOV10-like 1). Homo sapiens (Human). Length = 1211 Score = 205 bits (521), Expect = 6e-53 Identities = 95/284 (33%), Positives = 125/284 (44%), Gaps = 36/284 (12%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK---KFILVGDHK 60 + +T ++ + + F V +DEA QA E ECLIPL L + +L GD Sbjct: 858 RIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPM 917 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVR-----------------LNVQYRMHP 103 QL P IKS + A GL S ERL+ L YR H Sbjct: 918 QLGPVIKS-RLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHE 976 Query: 104 EICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEG 163 + LPS LFY V ++ G+ P+ PL F G E E + Sbjct: 977 ALLMLPSRLFYH-----RELEVCADPTVVTSLLGWEKLPKKGFPLIFHGVRGSEAREGKS 1031 Query: 164 YSYQNPGEAEFVVEIVEYLLR---SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEV 220 S+ NP EA V+ L S V DIGVITPY QVE IR IL L ++V Sbjct: 1032 PSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIR-ILLRNVDLMDIKV 1090 Query: 221 STVDSFQGREKDIIILSLVRSNRNG------EIGFLRDERRLNV 258 +V+ FQG+E +II+S VRSN + +GFL + +R NV Sbjct: 1091 GSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNV 1134 >sw:SETX_HUMAN Probable helicase senataxin (EC 3.6.1.-) (SEN1 homolog). Homo sapiens (Human). Length = 2677 Score = 200 bits (510), Expect = 1e-51 Identities = 100/276 (36%), Positives = 138/276 (50%), Gaps = 30/276 (10%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFK---FDVVIIDEAAQALEAECLIPLLLAKKKFILVG 57 E+ ++ T + + A F VI+DEA Q+ E E L PL+ K ILVG Sbjct: 2147 ESHIICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVG 2206 Query: 58 DHKQLPPTIKSKKAAAKAGLEESL---FERLVELGV--------SVVRLNVQYRMHPEIC 106 D KQLPPT+ S KA G ++S+ F RL+E V +++L VQYRMHP+IC Sbjct: 2207 DPKQLPPTVISMKAQE-YGYDQSMMARFCRLLEENVEHNMISRLPILQLTVQYRMHPDIC 2265 Query: 107 RLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 PSN Y N + + A R D V + G E + SY Sbjct: 2266 LFPSNYVYNRNLKTNRQTEAIRCSSDW-----------PFQPYLVFDVGDGSERRDNDSY 2314 Query: 167 QNPGEAEFVVEIVEYL--LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPV-EVSTV 223 N E + V+EI++ + R V +IG+IT Y Q +I+ L+ K EV TV Sbjct: 2315 INVQEIKLVMEIIKLIKDKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTV 2374 Query: 224 DSFQGREKDIIILSLVRSNR-NGEIGFLRDERRLNV 258 D+FQGR+KD +I++ VR+N G IGFL +RLNV Sbjct: 2375 DAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNV 2410 >sw:M10L1_MOUSE Potential helicase Mov10l1 (EC 3.6.1.-) (Moloney leukemia virus 10- like protein 1) (MOV10-like 1) (Cardiac helicase activated by MEF2 protein) (Cardiac-specific RNA helicase). Mus musculus (Mouse). Length = 1187 Score = 197 bits (501), Expect = 1e-50 Identities = 91/283 (32%), Positives = 123/283 (43%), Gaps = 34/283 (12%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL---AKKKFILVGDHK 60 + +T +A + + F V +DEA QA E ECLIPL L + +L GD Sbjct: 860 RIIITTCSSAGLFYQIGVRVGYFTHVFVDEAGQASEPECLIPLGLISDINGQIVLAGDPM 919 Query: 61 QLPPTIKS---KKAAAKAGLEESLFERLVELGVSVVR-------------LNVQYRMHPE 104 QL P IKS + E L R L L YR H Sbjct: 920 QLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDENAFGACGAYNPLLVTKLVKNYRSHSA 979 Query: 105 ICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY 164 + LPS LFY V + ++ G+ P+ PL F G E E Sbjct: 980 LLALPSRLFYH-----RELEVCADPKVVTSLLGWEKLPRKGFPLIFHGVRGNEAREGRSP 1034 Query: 165 SYQNPGEAEFVVEIVEYLLR---SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVS 221 S+ +P EA V+ L R S V +DIGVITPY QVE I+ IL L ++V Sbjct: 1035 SWFSPAEAVQVMRYCCLLARSVSSQVSSKDIGVITPYRKQVEKIK-ILLRNVDLTDIKVG 1093 Query: 222 TVDSFQGREKDIIILSLVRSNRNG------EIGFLRDERRLNV 258 +V+ FQG+E +I++S VRSN + +GFL + +R NV Sbjct: 1094 SVEEFQGQEYLVIVISTVRSNEDRFEDDRYFLGFLSNSKRFNV 1136 >sw:SDE3_ARATH Probable RNA helicase SDE3 (EC 3.6.1.-) (Silencing defective protein 3). Arabidopsis thaliana (Mouse-ear cress). Length = 1002 Score = 190 bits (483), Expect = 1e-48 Identities = 93/270 (34%), Positives = 130/270 (48%), Gaps = 24/270 (8%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLL---LAKKKFILVGDHKQL 62 ++ +AS + + + F +++DEA QA E E +I + L + +L GD +QL Sbjct: 519 VVSTYMSASLLNAEGVNRGHFTHILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQL 578 Query: 63 PPTIKSKKAAAKA---GLEESLFERLVELGVS---VVRLNVQYRMHPEICRLPSNLFYEG 116 P I S+ A + E LFE V +L YR HPEI LPS LFY+G Sbjct: 579 GPVIYSRDAESLGLGKSYLERLFECDYYCEGDENYVTKLVKNYRCHPEILDLPSKLFYDG 638 Query: 117 NGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVV 176 VA + + DS P P+ F G +E E S+ N E V+ Sbjct: 639 ------ELVASKEDTDSVLASLNFLPNKEFPMVFYGIQGCDEREGNNPSWFNRIEISKVI 692 Query: 177 EIVEYLLRS-GVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIII 235 E ++ L + V EDIGVITPY QV I+ +L R + V+V +V+ FQG+EK +II Sbjct: 693 ETIKRLTANDCVQEEDIGVITPYRQQVMKIKEVL-DRLDMTEVKVGSVEQFQGQEKQVII 751 Query: 236 LSLVRS----NRNGEI---GFLRDERRLNV 258 +S VRS N GFL + RR NV Sbjct: 752 ISTVRSTIKHNEFDRAYCLGFLSNPRRFNV 781 >sw:HELZ_HUMAN Potential helicase with zinc-finger domain. Homo sapiens (Human). Length = 1942 Score = 178 bits (453), Expect = 4e-45 Identities = 82/288 (28%), Positives = 118/288 (40%), Gaps = 48/288 (16%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK--KFILVGDH 59 V + + L LE F +++DEAAQA+E E ++PL LA + + +L GDH Sbjct: 764 KHRVVVVTLNTSQYLCQLDLEPGFFTHILLDEAAQAMECETIMPLALATQNTRIVLAGDH 823 Query: 60 KQLPPTIKSKKAAAK---AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEG 116 QL P + S+ A + L + L+E + L YR H I S LFYEG Sbjct: 824 MQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEG 883 Query: 117 NGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVV 176 G P + PL+F G + +E ++ N E VV Sbjct: 884 K---------------LMASGKQPAHKDFYPLTFFTARGEDVQEKNSTAFYNNAEVFEVV 928 Query: 177 EIVEYLLR------SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGRE 230 E VE L R + IGV+TPY QV IR L + L V V V + QG++ Sbjct: 929 ERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKK-RLSDVNVERVLNVQGKQ 987 Query: 231 KDIIILSLVRSN---------------------RNGEIGFLRDERRLN 257 ++ LS VR+ + + GFL + + LN Sbjct: 988 FRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLN 1035 >sw:MOV10_MOUSE Potential helicase MOV-10 (EC 3.6.1.-) (Moloney leukemia virus 10 protein). Mus musculus (Mouse). Length = 1004 Score = 176 bits (446), Expect = 3e-44 Identities = 87/298 (29%), Positives = 133/298 (44%), Gaps = 50/298 (16%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLL---------LAKKKFI 54 V +T AS+ S F + IDEA +E E L+ + + + Sbjct: 618 RVLITTLITASRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMDVKETGNPGGQLV 677 Query: 55 LVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELG-------------VSVVRLNVQYRM 101 L GD +QL P ++S A K GL SL ERL+ L YR Sbjct: 678 LAGDPRQLGPVLRS-PLALKHGLGYSLLERLLAYNSLYKKGPNGYDPQFITKLLR-NYRS 735 Query: 102 HPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEP 161 HP I +P+ L+Y+G L + V R + PQ P+ F G +E E Sbjct: 736 HPTILDIPNQLYYDG-ELQACADVVDRERFCRWEG----LPQQGFPIIFHGVMGKDEREG 790 Query: 162 EGYSYQNPGEAEFVVEIVEYLL-------RSGVPPEDIGVITPYNGQVELIR-------N 207 S+ NP EA V ++ LL ++ + P ++GVI+PY QVE IR Sbjct: 791 NSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRNVGVISPYRKQVEKIRYCITKLDR 850 Query: 208 ILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRN-------GEIGFLRDERRLNV 258 L +K ++V +V+ FQG+E+ +I++S VRS+++ +GFL++ +R NV Sbjct: 851 ELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNV 908 >sw:ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 (EC 3.6.1.-) (Extracellular matrix protein 32) (Helicase 1) (scHelI) (DNA helicase B) (DNA helicase III) (Hcs B) (Modulator of translation termination protein 1). Saccharomyces cerevisiae (Baker's yeast). Length = 1121 Score = 173 bits (440), Expect = 2e-43 Identities = 93/272 (34%), Positives = 127/272 (46%), Gaps = 52/272 (19%) Query: 28 VVIIDEAAQALEAECLIPLLL-AKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLV 86 VVI+DEA Q+ EA L+PL L + F+ VGD KQL + LE SLFER++ Sbjct: 816 VVIMDEATQSSEASTLVPLSLPGIRNFVFVGDEKQLSSFSNIPQ------LETSLFERVL 869 Query: 87 ELG--VSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQF 144 G + + L+ QYRMHP+I P Y G L D + ++ +P FF Sbjct: 870 SNGTYKNPLMLDTQYRMHPKISEFPIKKIYNG-ELKDGVTDEQKAWPGVQHPLFFYQCDL 928 Query: 145 IVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE-YLLRSGVPPEDIGVITPYNGQVE 203 G++Y+N E +V+I++ +L VP E+IGVITPY+ Q + Sbjct: 929 GPESRVRSTQRDIV----GFTYENKHECVEIVKIIQILMLDKKVPLEEIGVITPYSAQRD 984 Query: 204 LIRNILNSR-----------CSLKPVE--------------------------VSTVDSF 226 L+ +IL +E V+TVDSF Sbjct: 985 LLSDILTKNVVINPKQISMQQEYDEIELFNAAGSQGTAGSLQNNVINIINGLHVATVDSF 1044 Query: 227 QGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG EK II S VR+N +IGFLRD+RRLNV Sbjct: 1045 QGHEKSFIIFSCVRNNTENKIGFLRDKRRLNV 1076 >sw:MOV10_HUMAN Potential helicase MOV-10 (EC 3.6.1.-) (Moloney leukemia virus 10 protein). Homo sapiens (Human). Length = 1003 Score = 172 bits (436), Expect = 4e-43 Identities = 84/298 (28%), Positives = 129/298 (43%), Gaps = 50/298 (16%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLL---------LAKKKFI 54 V +T A + S F + IDEA +E E L+ + + + Sbjct: 617 RVLITTLITAGRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLV 676 Query: 55 LVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELG-------------VSVVRLNVQYRM 101 L GD +QL P ++S GL SL ERL+ L YR Sbjct: 677 LAGDPRQLGPVLRSPLTQKH-GLGYSLLERLLTYNSLYKKGPDGYDPQFITKLLR-NYRS 734 Query: 102 HPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEP 161 HP I +P+ L+YEG L + V R + P+ P+ F G +E E Sbjct: 735 HPTILDIPNQLYYEG-ELQACADVVDRERFCRWAG----LPRQGFPIIFHGVMGKDEREG 789 Query: 162 EGYSYQNPGEAEFVVEIVEYLL-------RSGVPPEDIGVITPYNGQVELIR-------N 207 S+ NP EA V ++ LL ++ + P +GVI+PY QVE IR Sbjct: 790 NSPSFFNPEEAATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDR 849 Query: 208 ILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRN-------GEIGFLRDERRLNV 258 L +K ++V +V+ FQG+E+ +I++S VRS+++ +GFL++ +R NV Sbjct: 850 ELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNV 907 >sw:PR285_HUMAN Peroxisomal proliferator-activated receptor A interacting complex 285 kDa protein (PPAR-alpha interacting complex protein 285). Homo sapiens (Human). Length = 2649 Score = 170 bits (430), Expect = 2e-42 Identities = 92/283 (32%), Positives = 126/283 (44%), Gaps = 50/283 (17%) Query: 4 VVAMTCTGAAS-KRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK--KFILVGDHK 60 V+ TC+ AAS K L + + +++DEA A E E LIPL+ + K +L+GDHK Sbjct: 2336 VILCTCSCAASASLKILDVRQ-----ILVDEAGMATEPETLIPLVQFPQAEKVVLLGDHK 2390 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN--- 117 QL P +K+++ GL+ SLFER E L+ QYRMH IC PS FY+ Sbjct: 2391 QLRPVVKNERLQ-NLGLDRSLFERYHEDAH---MLDTQYRMHEGICAFPSVAFYKSKLKT 2446 Query: 118 --GLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEE------EPEGYSYQNP 169 GL SV +S P+ F G E E S N Sbjct: 2447 WQGLRRPPSVLGHAGKESC------------PVIFGHVQGHERSLLVSTDEGNENSKANL 2494 Query: 170 GEAEFVVEIVEYL-LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQG 228 E VV I + L L V P+DI V+TPYN Q I L V VS++ QG Sbjct: 2495 EEVAEVVRITKQLTLGRTVEPQDIAVLTPYNAQASEISKALRREGIA-GVAVSSITKSQG 2553 Query: 229 REKDIIILSLVRSNRNGE-------------IGFLRDERRLNV 258 E +++S VR+ + +GF+ D ++NV Sbjct: 2554 SEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNV 2596 Score = 109 bits (272), Expect = 4e-24 Identities = 68/255 (26%), Positives = 96/255 (37%), Gaps = 32/255 (12%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--KKFILVGDH 59 V +T T A + L + F ++IDEAAQ LE E L PL A + +L GDH Sbjct: 640 RHRVVVTTTSQA---RELRVPVGFFSHILIDEAAQMLECEALTPLAYASHGTRLVLAGDH 696 Query: 60 KQLPPTIKSKKAAAKA--GLEESLFERLVELGVSVVRLNV-----QYRMHPEICRLPSNL 112 Q+ P + S A A L LF + V R + YR I S Sbjct: 697 MQVTPRLFSVARARAAEHTLLHRLFLCYQQETHEVARQSRLVFHENYRCTDAIVSFISRH 756 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 FY G + G P PL F +G + + S+ N E Sbjct: 757 FYVAKGNPIHAR------------GKVPPHPRHYPLMFCHVAGNPDRDMSMASWLNLAEI 804 Query: 173 EFVVEIVEYLLR------SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSF 226 VVE V+ G I V++ + QV +R L R V V + + Sbjct: 805 AQVVEKVQEAYNTWPSCWGGREQRCICVVS-HGAQVSALRQELRRRDLG-QVSVGSFEIL 862 Query: 227 QGREKDIIILSLVRS 241 GR+ +++LS V + Sbjct: 863 PGRQFRVVVLSTVHT 877 >sw:ARMI_DROME Probable RNA helicase armi (EC 3.6.1.-) (Armitage protein). Drosophila melanogaster (Fruit fly). Length = 1274 Score = 151 bits (382), Expect = 8e-37 Identities = 80/295 (27%), Positives = 123/295 (41%), Gaps = 49/295 (16%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIP---LLLAKKKFILVGDH 59 + ++ L F V+ DEA Q E E ++P L + + +L GD Sbjct: 919 HRITISTCTTLGNFLQLGFPAGHFTHVLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDP 978 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQ-------------------YR 100 +QL +I + + A+K G S ERL L S R ++Q YR Sbjct: 979 RQL-QSIVTSRIASKMGFSISFLERL--LERSPYRKDLQRFPESSGYNPLVLTKLLYNYR 1035 Query: 101 MHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGF----FPTPQFIV---PLSFVDN 153 P I + S LFY I ++ + +S F + + I F Sbjct: 1036 ALPSIMSIYSRLFY---DDELIPVLSEKDSRESRLLSKLRCVFESEKDIPQAHGTFFYGI 1092 Query: 154 SGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC 213 G + + S+ NP E V + L R+ V + IG+ITPY QV +L S Sbjct: 1093 IGENRQNNDSPSWFNPQEVREVFLMTIALYRANVTADQIGIITPYQKQV----KMLRSMF 1148 Query: 214 SLKPV---EVSTVDSFQGREKDIIILSLVRSNR-------NGEIGFLRDERRLNV 258 V ++ +V+ FQG+E+DII++S VRS+ +GF+R +RLNV Sbjct: 1149 IGTDVVMPKIGSVEEFQGQERDIILISTVRSSEEILRMDARFSLGFVRCSKRLNV 1203 >sw:YQ12_CAEEL Hypothetical protein C05C10.2 in chromosome II. Caenorhabditis elegans. Length = 1551 Score = 122 bits (307), Expect = 4e-28 Identities = 84/255 (32%), Positives = 110/255 (43%), Gaps = 18/255 (7%) Query: 10 TGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKK-FILVGDHKQLPPTI-- 66 A K L V IDEA+Q E L L F L+GD QLPP Sbjct: 1187 MVTADSAKGLLNILRDVCAVQIDEASQLAECTLLGLLKSFNNASFGLIGDIHQLPPYCEE 1246 Query: 67 KSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVA 126 + G+ ++ + E V L YR HP+ L S LFY+G LV S Sbjct: 1247 GLEGKLKDFGIGNTMERAIKEKMFPVCTLRNVYRCHPKTTELLSELFYDG-ALVSGVSEL 1305 Query: 127 RRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLL--- 183 R ++ + F P P+ FV+N+G G S N E V EIV+ L+ Sbjct: 1306 ARSDFMTKRDDF--WPNPKFPMMFVNNTG--ASTKMGTSTSNSSEKSIVGEIVQNLINDP 1361 Query: 184 RSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNR 243 R+ V P DIGVI+ Y+ Q IL V+ TVD+FQG EK+III+ S Sbjct: 1362 RNPVNPSDIGVISFYSAQTS----ILTEHLRGSGVKCGTVDAFQGSEKEIIIM---CSTN 1414 Query: 244 NGEIGFLRDERRLNV 258 F++ RLNV Sbjct: 1415 ERISDFMQLSNRLNV 1429 >sw:Y153_MYCPN Hypothetical ATP-binding protein MG140 homolog (E07_orf1113). Mycoplasma pneumoniae. Length = 1113 Score = 107 bits (269), Expect = 8e-24 Identities = 69/269 (25%), Positives = 99/269 (36%), Gaps = 55/269 (20%) Query: 22 EKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEE-- 79 ++ +D V+IDEA+Q E IP+L K+I+ GD KQL P+ + A EE Sbjct: 692 QRRLYDYVVIDEASQVY-LERAIPILYRGAKYIIAGDTKQLKPSNFFQARAEYDVDEEFE 750 Query: 80 -----------SLFERLVELGVSVVRLNVQYRMHPEICR-LPSNLFYEGNGLVDISSVAR 127 SL L + L YR +N Y Sbjct: 751 DGNVEAAVHSTSLLHFLKNRSRILTLLKFHYRSDSANLIAFTNNRIYNNEL--------- 801 Query: 128 RLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGV 187 + + A V N+ N EA VV+ +E L ++ Sbjct: 802 -IFMNKATADKQVFIVHDVIDGIWRNNR------------NLQEARDVVQRLEQLTQTAE 848 Query: 188 PPEDIGVITPYNGQVELI---------------RNILNSRCSLKPVEVSTVDSFQGREKD 232 + +GVI Q ELI R+ +N++ + V +++ QG E+D Sbjct: 849 YQKSLGVICFNKNQAELIEYMIDKQNNPLLNEWRDRVNAQGEYVGLFVKNIENVQGDERD 908 Query: 233 IIILSLV--RS-NRNGEIGFLRDERRLNV 258 III SL RS N G I E RLNV Sbjct: 909 IIIFSLGYDRSVNSYGPISKQGGENRLNV 937 >sw:Y140_MYCGE Hypothetical ATP-binding protein MG140. Mycoplasma genitalium. Length = 1113 Score = 104 bits (259), Expect = 1e-22 Identities = 70/285 (24%), Positives = 100/285 (35%), Gaps = 58/285 (20%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 MT AA+ ++ +D V+IDEA+Q + L A K+I+ GD KQL P Sbjct: 679 IMTLESAATL---TPNQRGLYDYVVIDEASQVFLERAIPILFRAD-KYIIAGDTKQLKPA 734 Query: 66 IKSKKAAAK-------------AGLEESLFERLVELGVSVVRLNVQYRMHP-EICRLPSN 111 + A A SL L + L YR ++ +N Sbjct: 735 NFFQSRAEYDVDEEFEDGNIEAAVHSSSLLHFLKNRSRILTLLKFHYRSDSADLIAFTNN 794 Query: 112 LFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGE 171 Y+ + + AN V N+ N E Sbjct: 795 RIYDNEL----------IFMNKANADQRVFIVHDVIDGIWKNNR------------NLQE 832 Query: 172 AEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELI---------------RNILNSRCSLK 216 A VV+ +E L + + +GVI Q +LI R N + Sbjct: 833 ARDVVQRLEQLTTTNDYKKSLGVICFNKNQADLIEYLIDKQNNPLLNEWRERQNDVGEYE 892 Query: 217 PVEVSTVDSFQGREKDIIILSLV--RS-NRNGEIGFLRDERRLNV 258 + V +++ QG E+DIII SL RS N G I E RLNV Sbjct: 893 GLFVKNIENVQGDERDIIIFSLGYDRSVNSYGPISKQGGENRLNV 937 >sw:CWF11_SCHPO Cell cycle control protein cwf11. Schizosaccharomyces pombe (Fission yeast). Length = 1284 Score = 97.2 bits (241), Expect = 2e-20 Identities = 67/252 (26%), Positives = 115/252 (45%), Gaps = 22/252 (8%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLL-----LAKKKFILVG 57 +++ T T +++ +L + F F+ +I+ + E+ LL + +L+G Sbjct: 950 RIIGCTWTSLSTRLGTLKEKGFCFNNLIVMNSQNISESSITSILLSNCEPTGFDRLVLLG 1009 Query: 58 DHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN 117 + T ++ + SLF+RL L ++ LN QY + I L S+++ Sbjct: 1010 NQYL---TSGNQDINNTSNG--SLFKRLRYLKSRIIDLNTQYNVRESISSLCSSIYPLDI 1064 Query: 118 GLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVE 177 VD SS +RL+Y N GF QFI +F G +E EP QN GEAE+ V Sbjct: 1065 KTVD-SSPNKRLDY--GNSGFAHEVQFINVGAFK---GSQETEPVSGYKQNLGEAEYAVA 1118 Query: 178 IVEYLLRSGVPPEDIGVITPYNGQVELIRNILN-----SRCSLKPVEVSTVDSFQGREK- 231 + +Y+ G P +I + T Y QV L+ I++ + +P V TV+ ++ Sbjct: 1119 LFQYMRMLGYPTNEIVICTLYESQVSLLNEIISVRCSHNSFFGQPAFVGTVEKLPSDKRV 1178 Query: 232 DIIILSLVRSNR 243 + +I + V S Sbjct: 1179 NFVIFTTVESKE 1190 >sw:R1AB_CVBM Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10; p22; p12; Growth factor-like peptide (GFL) (p15); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (p100); Helicase (Hel) (p67); Unknown protein 2; p35; Unknown protein 3]. Bovine coronavirus (strain Mebus) (BCoV) (BCV). Length = 7094 Score = 72.5 bits (177), Expect = 5e-13 Identities = 53/244 (21%), Positives = 86/244 (35%), Gaps = 43/244 (17%) Query: 18 SLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAK 74 AL + D+V++DE + E + + A K ++ +GD QLP P + K + Sbjct: 5656 INALPEMVTDIVVVDEVSMLTNYELSVINARIRA-KHYVYIGDPAQLPAPRVLLSKGTLE 5714 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 + +L+ + L YR EI S L YE + S+ Sbjct: 5715 PKYFNT-VTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENK--------LKAKNESSS 5765 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGV 194 E S N + + I ++L + + + + Sbjct: 5766 LC--------------FKVYYKGVTTHESSSAVNM---QQIYLINKFLKANPLWHKAV-F 5807 Query: 195 ITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDER 254 I+PYN Q R +L ++ TVDS QG E D +I S + E + Sbjct: 5808 ISPYNSQNFAARRVL-------GLQTQTVDSAQGSEYDYVIYS-----QTAETAHSVNVN 5855 Query: 255 RLNV 258 R NV Sbjct: 5856 RFNV 5859 >sw:R1AB_CVPPU Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown protein 1; 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3CLp) (M-PRO) (p34); p5; p23; p12; Growth factor-like peptide (GFL) (p14); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (p100); Helicase (Hel) (p66) (p66-HEL); Unknown protein 2; p41; Unknown protein 3]. Porcine transmissible gastroenteritis coronavirus (strain Purdue) (TGEV). Length = 6684 Score = 72.2 bits (176), Expect = 6e-13 Identities = 56/243 (23%), Positives = 87/243 (35%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP--TIKSKKAAAKA 75 AL + D+V++DE + +I L+ K + VGD +QLP T+ +K Sbjct: 5289 NALPEASCDIVVVDEVSMCTNYDLSVINSRLSYKHIVYVGDPQQLPAPRTLINKGVLQPQ 5348 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 + +R+ LG V L+ YR EI + S L YE Sbjct: 5349 DYNV-VTKRMCTLG-PDVFLHKCYRCPAEIVKTVSALVYEN------------------- 5387 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 F F + + S N +E+V+ L I Sbjct: 5388 --KFVPVNPESKQCFKMFVKGQVQIESNSSINNKQ-----LEVVKAFLAHNPKWRKAVFI 5440 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + R +L ++ TVDS QG E D +I +++ + R Sbjct: 5441 SPYNSQNYVARRLL-------GLQTQTVDSAQGSEYDYVIY--TQTSDTQ---HATNVNR 5488 Query: 256 LNV 258 NV Sbjct: 5489 FNV 5491 >sw:R1AB_CVBQ Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10; p22; p12; Growth factor-like peptide (GFL) (p15); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (p100); Helicase (Hel) (p67); Unknown protein 2; p35; Unknown protein 3]. Bovine coronavirus (strain Quebec) (BCoV) (BCV). Length = 7059 Score = 71.4 bits (174), Expect = 1e-12 Identities = 52/244 (21%), Positives = 86/244 (35%), Gaps = 43/244 (17%) Query: 18 SLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAK 74 AL + D+V++DE + E + + A K ++ +GD QLP P + K + Sbjct: 5656 INALPEMVTDIVVVDEVSMLTNYELSVINARIRA-KHYVYIGDPAQLPAPRVLLSKGTLE 5714 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 + +L+ + L YR EI S L YE + S+ Sbjct: 5715 PKYFNT-VTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENK--------LKAKNESSS 5765 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGV 194 E S N + + I ++L + + + + Sbjct: 5766 LC--------------FKVYYKGVTTHESSSAVNM---QQIYLINKFLKANPLWHKAV-F 5807 Query: 195 ITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDER 254 I+PYN Q + +L ++ TVDS QG E D +I S + E + Sbjct: 5808 ISPYNSQNFAAKRVL-------GLQTQTVDSAQGSEYDYVIYS-----QTAETAHSVNVN 5855 Query: 255 RLNV 258 R NV Sbjct: 5856 RFNV 5859 >sw:R1AB_CVBLU Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10; p22; p12; Growth factor-like peptide (GFL) (p15); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (p100); Helicase (Hel) (p67); Unknown protein 2; p35; Unknown protein 3]. Bovine coronavirus (strain 98TXSF-110-LUN) (BCoV-LUN) (BCV). Length = 7094 Score = 71.0 bits (173), Expect = 1e-12 Identities = 52/244 (21%), Positives = 86/244 (35%), Gaps = 43/244 (17%) Query: 18 SLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAK 74 AL + D+V++DE + E + + A K ++ +GD QLP P + K + Sbjct: 5656 INALPEMVTDIVVVDEVSMLTNYELSVINARIRA-KHYVYIGDPAQLPAPRVLLSKGTLE 5714 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 + +L+ + L YR EI S L YE + S+ Sbjct: 5715 PKYFNT-VTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENK--------LKAKNESSS 5765 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGV 194 E S N + + I ++L + + + + Sbjct: 5766 LC--------------FKVYYKGVTTHESSSAVNM---QQIYLINKFLKANPLWHKAV-F 5807 Query: 195 ITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDER 254 I+PYN Q + +L ++ TVDS QG E D +I S + E + Sbjct: 5808 ISPYNSQNFAAKRVL-------GLQTQTVDSAQGSEYDYVIYS-----QTAETAHSVNVN 5855 Query: 255 RLNV 258 R NV Sbjct: 5856 RFNV 5859 >sw:R1AB_CVBEN Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10; p22; p12; Growth factor-like peptide (GFL) (p15); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (p100); Helicase (Hel) (p67); Unknown protein 2; p35; Unknown protein 3]. Bovine coronavirus (strain 98TXSF-110-ENT) (BCoV-ENT) (BCV). Length = 7094 Score = 71.0 bits (173), Expect = 1e-12 Identities = 52/244 (21%), Positives = 86/244 (35%), Gaps = 43/244 (17%) Query: 18 SLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAK 74 AL + D+V++DE + E + + A K ++ +GD QLP P + K + Sbjct: 5656 INALPEMVTDIVVVDEVSMLTNYELSVINARIRA-KHYVYIGDPAQLPAPRVLLSKGTLE 5714 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 + +L+ + L YR EI S L YE + S+ Sbjct: 5715 PKYFNT-VTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENK--------LKAKNESSS 5765 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGV 194 E S N + + I ++L + + + + Sbjct: 5766 LC--------------FKVYYKGVTTHESSSAVNM---QQIYLINKFLKANPLWHKAV-F 5807 Query: 195 ITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDER 254 I+PYN Q + +L ++ TVDS QG E D +I S + E + Sbjct: 5808 ISPYNSQNFAAKRVL-------GLQTQTVDSAQGSEYDYVIYS-----QTAETAHSVNVN 5855 Query: 255 RLNV 258 R NV Sbjct: 5856 RFNV 5859 >sw:R1AB_CVMA5 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10; p22; p12; Growth factor-like peptide (GFL) (p15); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (p100); Helicase (Hel) (p67); Unknown protein 2; p35; Unknown protein 3]. Murine coronavirus (strain A59) (MHV-A59) (Murine hepatitis virus). Length = 7176 Score = 69.5 bits (169), Expect = 3e-12 Identities = 50/244 (20%), Positives = 86/244 (35%), Gaps = 43/244 (17%) Query: 18 SLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAK 74 AL + D++++DE + E + + A K ++ +GD QLP P + K + Sbjct: 5741 INALPELVTDIIVVDEVSMLTNYELSVINSRVRA-KHYVYIGDPAQLPAPRVLLNKGTLE 5799 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 S +L+ + L YR EI S L Y + +S+ Sbjct: 5800 PRYFNS-VTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYNNK--------LKAKNDNSS 5850 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGV 194 + E S N + + ++ L++ + Sbjct: 5851 MC--------------FKVYYKGQTTHESSSAVNMQQ----IHLISKFLKANPSWSNAVF 5892 Query: 195 ITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDER 254 I+PYN Q + + +L ++ TVDS QG E D +I S + E + Sbjct: 5893 ISPYNSQNYVAKRVL-------GLQTQTVDSAQGSEYDFVIYS-----QTAETAHSVNVN 5940 Query: 255 RLNV 258 R NV Sbjct: 5941 RFNV 5944 >sw:R1AB_CVM2 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10; p22; p12; Growth factor-like peptide (GFL) (p15); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (p100); Helicase (Hel) (p67); Unknown protein 2; p35; Unknown protein 3]. Murine coronavirus (strain 2) (MHV-2) (Murine hepatitis virus). Length = 7124 Score = 68.3 bits (166), Expect = 7e-12 Identities = 50/244 (20%), Positives = 85/244 (34%), Gaps = 43/244 (17%) Query: 18 SLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAK 74 AL + D++++DE + E + + A K ++ +GD QLP P + K + Sbjct: 5689 INALPELVTDIIVVDEVSMLTNYELSVINSRVRA-KHYVYIGDPAQLPAPRVLLNKGTLE 5747 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 S +L+ + L YR EI S L Y + +S+ Sbjct: 5748 PRYFNS-VTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYHNK--------LKAKNDNSS 5798 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGV 194 + E S N + + + L++ + Sbjct: 5799 MC--------------FKVYYKGQTTHESSSAVNMQQIYLISK----FLKANPSWSNAVF 5840 Query: 195 ITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDER 254 I+PYN Q + + +L ++ TVDS QG E D +I S + E + Sbjct: 5841 ISPYNSQNYVAKRVL-------GLQTQTVDSAQGSEYDFVIYS-----QTAETAHSVNVN 5888 Query: 255 RLNV 258 R NV Sbjct: 5889 RFNV 5892 >sw:R1AB_PEDV7 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown protein 1; 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3CLp) (M-PRO) (p34); p5; p23; p12; Growth factor-like peptide (GFL) (p14); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (p100); Helicase (Hel) (p66) (p66-HEL); Unknown protein 2; p41; Unknown protein 3]. Porcine epidemic diarrhea virus (strain CV777) (PEDV). Length = 6781 Score = 67.9 bits (165), Expect = 9e-12 Identities = 52/254 (20%), Positives = 87/254 (34%), Gaps = 44/254 (17%) Query: 9 CTGA-ASKRKSLALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLP-PT 65 T A AL + D+V++DE + +I ++ + + VGD +QLP P Sbjct: 5378 NTSAQYLFSTVNALPECNADIVVVDEVSMCTNYDLSVINQRISYRHVVYVGDPQQLPAPR 5437 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSV 125 + + + + +R+ L V L+ YR EI R S + YE Sbjct: 5438 VMISRGTLEPKDYNVVTQRMCALK-PDVFLHKCYRCPAEIVRTVSEMVYENQF------- 5489 Query: 126 ARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRS 185 P + + S N + + V + + Sbjct: 5490 ---------------IPVHPDSKQCFKIFCKGNVQVDNGSSINRRQLDVVR-----MFLA 5529 Query: 186 GVPPEDIGV-ITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRN 244 P V I+PYN Q + +L +++ TVDS QG E D +I + Sbjct: 5530 KNPRWSKAVFISPYNSQNYVASRLL-------GLQIQTVDSSQGSEYDYVIY-----AQT 5577 Query: 245 GEIGFLRDERRLNV 258 + + R NV Sbjct: 5578 SDTAHASNVNRFNV 5591 >sw:R1AB_CVH22 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3CLp) (M-PRO) (p34); Unknown protein 1; p5; p23; p12; Growth factor-like peptide (GFL) (p16); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (p100); Helicase (Hel) (p66) (p66-HEL); Unknown protein 2; p41; Unknown protein 3]. Human coronavirus (strain 229E) (HCoV-229E). Length = 6758 Score = 66.0 bits (160), Expect = 4e-11 Identities = 50/243 (20%), Positives = 83/243 (34%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP--TIKSKKAAAKA 75 AL + D+V++DE + +I ++ K + VGD +QLP + SK Sbjct: 5357 NALPEVNADIVVVDEVSMCTNYDLSVINQRISYKHIVYVGDPQQLPAPRVLISKGVMEPI 5416 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 + +R+ +G V L+ YR EI S L YE + Sbjct: 5417 DYNV-VTQRMCAIG-PDVFLHKCYRCPAEIVNTVSELVYENKFV---------------- 5458 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 P + + S N + +++V+ + I Sbjct: 5459 ------PVKEASKQCFKIFERGSVQVDNGSSINRRQ----LDVVKRFIHKNSTWSKAVFI 5508 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + L ++ TVDS QG E D +I + + + R Sbjct: 5509 SPYNSQ-NYVAARLL------GLQTQTVDSAQGSEYDYVIF-----AQTSDTAHACNANR 5556 Query: 256 LNV 258 NV Sbjct: 5557 FNV 5559 >sw:R1AB_CVMJH Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10; p22; p12; Growth factor-like peptide (GFL) (p15); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (p100); Helicase (Hel) (p67); Unknown protein 2; p35; Unknown protein 3]. Murine coronavirus (strain JHM) (MHV-JHM) (Murine hepatitis virus). Length = 7180 Score = 61.8 bits (149), Expect = 7e-10 Identities = 49/244 (20%), Positives = 85/244 (34%), Gaps = 43/244 (17%) Query: 18 SLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAK 74 AL + D++++DE + E + + A K ++ +GD QLP P + K + Sbjct: 5747 INALPELVTDIIVVDEVSMLTNYELSVINSRVRA-KHYVYIGDPAQLPAPRVLLNKGTLE 5805 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 S +L+ + L YR EI S L Y + +SA Sbjct: 5806 PRYFNS-VTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYNNK--------LKAKNDNSA 5856 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGV 194 + E S N + + ++ LL++ + Sbjct: 5857 MC--------------FKVYYKGQTTHESSSAVNMQQ----IHLISKLLKANPSWSNAVF 5898 Query: 195 ITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDER 254 I+PYN Q + + +L ++ T DS QG D +I S + + + Sbjct: 5899 ISPYNSQNYVAKRVL-------GLQTQTADSAQGSAYDFVIYS-----QTAQTAHSVNVN 5946 Query: 255 RLNV 258 R NV Sbjct: 5947 RFNV 5950 >sw:R1AB_IBVBC Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p87; p195 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); Peptide HD2 (p41); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3CLp) (M-PRO) (p33); p34; p9; p24; p10; Growth factor-like peptide (GFL) (p16); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (p100); Helicase (Hel) (p68); p58; p39; p35]. Avian infectious bronchitis virus (strain Beaudette CK) (IBV). Length = 6629 Score = 60.6 bits (146), Expect = 2e-09 Identities = 49/247 (19%), Positives = 82/247 (33%), Gaps = 47/247 (19%) Query: 18 SLALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP---TIKSKKAAA 73 AL + D++++DE + I + + + VGD QLP + + Sbjct: 5228 INALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLNGSLSPK 5287 Query: 74 KAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDS 133 + +L + L YR EI S L Y+G + + Sbjct: 5288 DYNVVTNLM----VCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIAN------------ 5331 Query: 134 ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG 193 P+ + N+G + E S N + EFV + + + Sbjct: 5332 -------NPESRECFKVIVNNGNSDVGHESGSAYNTTQLEFV----KDFVCRNKQWREAI 5380 Query: 194 VITPYNG--QVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLR 251 I+PYN Q + + V TVDS QG E D +I + ++ Sbjct: 5381 FISPYNAMNQRAY---------RMLGLNVQTVDSSQGSEYDYVIFCVTADSQ-----HAL 5426 Query: 252 DERRLNV 258 + R NV Sbjct: 5427 NINRFNV 5433 >sw:R1AB_IBVB Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p87; p195 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); Peptide HD2 (p41); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3CLp) (M-PRO) (p33); p34; p9; p24; p10; Growth factor-like peptide (GFL) (p16); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (p100); Helicase (Hel) (p68); p58; p39; p35]. Avian infectious bronchitis virus (strain Beaudette) (IBV). Length = 6629 Score = 60.6 bits (146), Expect = 2e-09 Identities = 49/247 (19%), Positives = 82/247 (33%), Gaps = 47/247 (19%) Query: 18 SLALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP---TIKSKKAAA 73 AL + D++++DE + I + + + VGD QLP + + Sbjct: 5228 INALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLNGSLSPK 5287 Query: 74 KAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDS 133 + +L + L YR EI S L Y+G + + Sbjct: 5288 DYNVVTNLM----VCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIAN------------ 5331 Query: 134 ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG 193 P+ + N+G + E S N + EFV + + + Sbjct: 5332 -------NPESRECFKVIVNNGNSDVGHESGSAYNTTQLEFV----KDFVCRNKQWREAI 5380 Query: 194 VITPYNG--QVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLR 251 I+PYN Q + + V TVDS QG E D +I + ++ Sbjct: 5381 FISPYNAMNQRAY---------RMLGLNVQTVDSSQGSEYDYVIFCVTADSQ-----HAL 5426 Query: 252 DERRLNV 258 + R NV Sbjct: 5427 NINRFNV 5433 >sw:R1AB_CVHSA Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes: Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains: Leader protein; p65 homolog; NSP1 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3CLp) (NSP2); NSP3; NSP4; NSP5; NSP6; Growth factor-like peptide (GFL) (NSP7); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (NSP9); Helicase (Hel) (NSP10); NSP11; NSP12; NSP13]. Human coronavirus (strain SARS) (HCoV-SARS) (SARS-CoV). Length = 7073 Score = 55.6 bits (133), Expect = 6e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >sw:YJHR_ECOLI Hypothetical protein yjhR. Escherichia coli. Length = 338 Score = 53.7 bits (128), Expect = 2e-07 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 11/109 (10%) Query: 161 PEGYSYQNPGEAEFVVE-IVEYLLRSGVPPED-----IGVITPYNGQVELIRNILNS--- 211 P G S NP EAE + +V + + +GV+TP++ QV I+ L Sbjct: 13 PNGGSRHNPLEAETIAAWLVAHKDDIERHYGEPLYKVVGVVTPFSAQVNAIKMSLRKLEI 72 Query: 212 RCSLKP--VEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 + + V TV S QG E+ I++ S V S + LNV Sbjct: 73 NGKDEQGLLTVGTVHSLQGAERAIVLFSPVYSKHEDGRFLDSNSTILNV 121 >sw:R1AB_BEV Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol); Helicase (Hel)] (Fragment). Berne virus (BEV). Length = 2291 Score = 47.1 bits (111), Expect = 2e-05 Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 8/124 (6%) Query: 28 VVIIDEAAQALEAECLIP-LLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLV 86 V+I DE + +I L + KK +L+GD QL P K+ K K L+ Sbjct: 1184 VLIADEVSLI-PPHVMIKILSMGFKKVVLLGDPFQLSPVYKNHKVHFKYDTF-----YLL 1237 Query: 87 ELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIV 146 +L L YR P+I S Y G+ +S + ++D Q Sbjct: 1238 QLATQKRYLTACYRCPPQILSAFSKP-YCDVGVDLVSFNNKPGKFDIIVSKQLANIQDFS 1296 Query: 147 PLSF 150 LS Sbjct: 1297 VLSV 1300 >sw:HMI1_YEAST ATP-dependent DNA helicase HMI1, mitochondrial precursor (EC 3.6.1.-). Saccharomyces cerevisiae (Baker's yeast). Length = 706 Score = 47.1 bits (111), Expect = 2e-05 Identities = 41/192 (21%), Positives = 72/192 (37%), Gaps = 24/192 (12%) Query: 22 EKFKFDVVIIDEAAQALEAEC--LIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEE 79 + K+ VV+IDE Q L LI ++ K+ I+ GD Q + + Sbjct: 200 LRNKYKVVLIDE-FQDLYPSLAPLITMICKGKQLIMFGDTNQ----SIYGFLGSNNEIMS 254 Query: 80 SLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFF 139 L + +V++L +R PEI L S + L + + E S Sbjct: 255 QLDNLHPKNSTTVLKLFDNFRSTPEIISLASKII--NRPLAEKQIIDDTDETPSELVRKL 312 Query: 140 PTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYN 199 P+ ++F D E+EF+++ + L+ S DI +++ N Sbjct: 313 PSGVSPQIMTFDDL---------------AAESEFIIDKITQLICSSAKFSDIAILSRTN 357 Query: 200 GQVELIRNILNS 211 + I +IL Sbjct: 358 SHLTAIASILKK 369 >sw:EX5A_BUCAP Exodeoxyribonuclease V alpha chain (EC 3.1.11.5). Buchnera aphidicola (subsp. Schizaphis graminum). Length = 602 Score = 45.2 bits (106), Expect = 8e-05 Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 16/143 (11%) Query: 24 FKFDVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQLPPTIKS---KKAAAKAGL 77 D++IIDEA+ + + L L K K I +GDH QL P S K + A Sbjct: 264 LMIDILIIDEASMIDILMMSNILSALSK-KTKIIFIGDHNQLKPVKSSSILKYICSYAED 322 Query: 78 EESLFERLVELGVSVVRLNVQYRMH--------PEICRLPSNLFYEGNGLVDISSVARRL 129 SL + L + Y+++ +IC L + +E + I S A Sbjct: 323 GYSL-KTQSILQEITQNSIINYKINKKNTSYISDKICVLKKSYRFEKKTGIYILSNAVYN 381 Query: 130 EYDSANPGFFPTPQFIVPLSFVD 152 + F V ++ Sbjct: 382 KETKIFEKLFKNSIENVFFYEIN 404 >sw:PCRA_BACSU ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Bacillus subtilis. Length = 739 Score = 43.3 bits (101), Expect = 3e-04 Identities = 46/248 (18%), Positives = 81/248 (32%), Gaps = 55/248 (22%) Query: 17 KSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK--KFILVGDHKQLPPTIKSKKAAAK 74 + L + KF + +DE A+ ++ LA++ +VGD Q + + A Sbjct: 208 EVLEFYQRKFQYIHVDEYQDTNRAQYMLVKQLAERFQNLCVVGDSDQ--SIYRWRGADIT 265 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 L FE+ SV+ L YR I R + + + Sbjct: 266 NILS---FEK-DYPNASVILLEQNYRSTKRILRAANEVIKNNSN---------------- 305 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSG-VPPEDIG 193 + ++ G++ G + GE +FV + L +G DI Sbjct: 306 RKPKNLWTE--------NDEGIKISYYRGDNEF--GEGQFVAGKIHQLHSTGKRKLSDIA 355 Query: 194 VITPYNGQVELIRNILNSRC----------SLKPVEVSTVDSFQGREKDIIILSLVRSNR 243 ++ N Q +I L E+ + ++ L LV SN Sbjct: 356 ILYRTNAQSRVIEETLLKAGLNYNIVGGTKFYDRKEIKDILAY---------LRLV-SNP 405 Query: 244 NGEIGFLR 251 + +I F R Sbjct: 406 DDDISFTR 413 >sw:PCRA_STAEP ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Staphylococcus epidermidis. Length = 729 Score = 42.1 bits (98), Expect = 6e-04 Identities = 34/216 (15%), Positives = 63/216 (29%), Gaps = 44/216 (20%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLLLAKK--KFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + KF + +DE +A+ + LLA K +VGD Q + A + S Sbjct: 210 QNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQ--SIYGWRGADIQN--ILS 265 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 E E + L YR I + + + Sbjct: 266 FEEDYPE--AKTIFLEQNYRSTKNILNAANEVIKHNSE---------------------- 301 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 P + ++ + EAE+VV+ + RSG ++ ++ N Sbjct: 302 ----RKPKGLWTANSGGDKIQYYEAMTERDEAEYVVKEIMKHQRSGKKYSEMAILYRTNA 357 Query: 201 QVELIRNILNSR----------CSLKPVEVSTVDSF 226 Q ++ E+ + S+ Sbjct: 358 QSRVLEETFMKSNIPYTMVGGQKFYDRKEIKDLLSY 393 >sw:POLN_SFV Nonstructural polyprotein (Polyprotein nsP1234) [Contains: Nonstructural protein NSP1; Nonstructural protein NSP2; Nonstructural protein NSP3; Nonstructural protein NSP4]. Semliki forest virus (SFV). Length = 2431 Score = 41.3 bits (96), Expect = 0.001 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQ 61 D++ +DEA LI L+ + K +L GD KQ Sbjct: 784 DILYVDEAFACHSGTLLALIALVKPRSKVVLCGDPKQ 820 >sw:PCRA_STAAR ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Staphylococcus aureus (strain MRSA252). Length = 730 Score = 41.0 bits (95), Expect = 0.001 Identities = 35/216 (16%), Positives = 65/216 (30%), Gaps = 44/216 (20%) Query: 23 KFKFDVVIIDEAAQALEAE-CLIPLLLAK-KKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + KF + +DE +A+ L+ LL +K K +VGD Q + A + S Sbjct: 210 QNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQ--SIYGWRGADIQN--ILS 265 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 + E + L YR I + + + Sbjct: 266 FEKDYPEAN--TIFLEQNYRSTKTILNAANEVIKNNSE---------------------- 301 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 P + E+ + EAEFV+ + R+G +D+ ++ N Sbjct: 302 ----RKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNA 357 Query: 201 QVELIRNILNSR----------CSLKPVEVSTVDSF 226 Q ++ E+ + S+ Sbjct: 358 QSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSY 393 >sw:PCRA_STAAW ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Staphylococcus aureus (strain MW2). Length = 730 Score = 41.0 bits (95), Expect = 0.002 Identities = 35/216 (16%), Positives = 65/216 (30%), Gaps = 44/216 (20%) Query: 23 KFKFDVVIIDEAAQALEAE-CLIPLLLAK-KKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + KF + +DE +A+ L+ LL +K K +VGD Q + A + S Sbjct: 210 QNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQ--SIYGWRGADIQN--ILS 265 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 + E + L YR I + + + Sbjct: 266 FEKDYPEAN--TIFLEQNYRSTKTILNAANEVIKNNSE---------------------- 301 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 P + E+ + EAEFV+ + R+G +D+ ++ N Sbjct: 302 ----RKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNA 357 Query: 201 QVELIRNILNSR----------CSLKPVEVSTVDSF 226 Q ++ E+ + S+ Sbjct: 358 QSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSY 393 >sw:PCRA_STAAS ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Staphylococcus aureus (strain MSSA476). Length = 730 Score = 41.0 bits (95), Expect = 0.002 Identities = 35/216 (16%), Positives = 65/216 (30%), Gaps = 44/216 (20%) Query: 23 KFKFDVVIIDEAAQALEAE-CLIPLLLAK-KKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + KF + +DE +A+ L+ LL +K K +VGD Q + A + S Sbjct: 210 QNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQ--SIYGWRGADIQN--ILS 265 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 + E + L YR I + + + Sbjct: 266 FEKDYPEAN--TIFLEQNYRSTKTILNAANEVIKNNSE---------------------- 301 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 P + E+ + EAEFV+ + R+G +D+ ++ N Sbjct: 302 ----RKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNA 357 Query: 201 QVELIRNILNSR----------CSLKPVEVSTVDSF 226 Q ++ E+ + S+ Sbjct: 358 QSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSY 393 >sw:PCRA_STAAN ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Staphylococcus aureus (strain N315). Length = 730 Score = 41.0 bits (95), Expect = 0.002 Identities = 35/216 (16%), Positives = 65/216 (30%), Gaps = 44/216 (20%) Query: 23 KFKFDVVIIDEAAQALEAE-CLIPLLLAK-KKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + KF + +DE +A+ L+ LL +K K +VGD Q + A + S Sbjct: 210 QNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQ--SIYGWRGADIQN--ILS 265 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 + E + L YR I + + + Sbjct: 266 FEKDYPEAN--TIFLEQNYRSTKTILNAANEVIKNNSE---------------------- 301 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 P + E+ + EAEFV+ + R+G +D+ ++ N Sbjct: 302 ----RKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNA 357 Query: 201 QVELIRNILNSR----------CSLKPVEVSTVDSF 226 Q ++ E+ + S+ Sbjct: 358 QSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSY 393 >sw:PCRA_STAAM ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Staphylococcus aureus (strain Mu50 / ATCC 700699). Length = 730 Score = 41.0 bits (95), Expect = 0.002 Identities = 35/216 (16%), Positives = 65/216 (30%), Gaps = 44/216 (20%) Query: 23 KFKFDVVIIDEAAQALEAE-CLIPLLLAK-KKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + KF + +DE +A+ L+ LL +K K +VGD Q + A + S Sbjct: 210 QNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQ--SIYGWRGADIQN--ILS 265 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 + E + L YR I + + + Sbjct: 266 FEKDYPEAN--TIFLEQNYRSTKTILNAANEVIKNNSE---------------------- 301 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 P + E+ + EAEFV+ + R+G +D+ ++ N Sbjct: 302 ----RKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNA 357 Query: 201 QVELIRNILNSR----------CSLKPVEVSTVDSF 226 Q ++ E+ + S+ Sbjct: 358 QSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSY 393 >sw:PCRA_STAAU ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Staphylococcus aureus. Length = 728 Score = 40.6 bits (94), Expect = 0.002 Identities = 35/216 (16%), Positives = 65/216 (30%), Gaps = 44/216 (20%) Query: 23 KFKFDVVIIDEAAQALEAE-CLIPLLLAK-KKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + KF + +DE +A+ L+ LL +K K +VGD Q + A + S Sbjct: 210 QNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQ--SIYGWRGADIQN--ILS 265 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 + E + L YR I + + + Sbjct: 266 FEKDYPEAN--TIFLEQNYRSTKTILNAANEVIKNNSE---------------------- 301 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 P + E+ + EAEFV+ + R+G +D+ ++ N Sbjct: 302 ----RKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNA 357 Query: 201 QVELIRNILNSR----------CSLKPVEVSTVDSF 226 Q ++ E+ + S+ Sbjct: 358 QSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSY 393 >sw:EX5A_BUCAI Exodeoxyribonuclease V alpha chain (EC 3.1.11.5). Buchnera aphidicola (subsp. Acyrthosiphon pisum) (Acyrthosiphon pisum symbiotic bacterium). Length = 602 Score = 39.0 bits (90), Expect = 0.005 Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 32/171 (18%) Query: 8 TCTGAASKRKSLALEKFKF---------DVVIIDEAAQ--ALEAECLIPLLLAKKKFILV 56 T T + + F DV+IIDE + L E ++ + K I + Sbjct: 235 TATTIHQLLGIQKISQKSFFNKSNCLDLDVLIIDEISMVDILMMEKILSSISKNTKLIFI 294 Query: 57 GDHKQLPPTIKSKKAAAKAGLEESL---FERLVELGVSVVRLNVQYRMH----------- 102 GDH QL P I+S K + F+ ++ + QY++ Sbjct: 295 GDHNQLGP-IESGSILRKICYYANDGYSFKSMISIEKLT-----QYKLCKKINKKTTNFI 348 Query: 103 -PEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVD 152 IC L N + N + S A + F + + Sbjct: 349 SDNICVLNKNYRFNKNSGIYTLSNAIFKKKTRIIESLFDNSIKNIFFYETN 399 >sw:POLN_SINDO Nonstructural polyprotein (P270) [Contains: Nonstructural protein NSP1; Nonstructural protein NSP2; Nonstructural protein NSP3; Nonstructural protein NSP4]. Sindbis virus (subtype Ockelbo / strain Edsbyn 82-5). Length = 2514 Score = 39.0 bits (90), Expect = 0.006 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Query: 27 DVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 +V+ +DEA A LI ++ +KK +L GD KQ Sbjct: 787 EVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPKQ 823 >sw:POLN_ONNVG Nonstructural polyprotein [Contains: Nonstructural protein NSP1; Nonstructural protein NSP2; Nonstructural protein NSP3; Nonstructural protein NSP4]. O'nyong-nyong virus (strain Gulu) (ONN). Length = 2514 Score = 38.6 bits (89), Expect = 0.006 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQ 61 +V+ +DEA LI ++ ++K +L GD KQ Sbjct: 782 EVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQ 818 >sw:UVRD_MYCTU Probable DNA helicase II homolog (EC 3.6.1.-). Mycobacterium tuberculosis. Length = 700 Score = 38.3 bits (88), Expect = 0.009 Identities = 32/151 (21%), Positives = 47/151 (31%), Gaps = 33/151 (21%) Query: 55 LVGDHKQLPPTIKSKKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNL 112 +VGD Q TI S G +VVRL YR P++ L + + Sbjct: 260 VVGDANQ---TIYS-----FTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSLANRV 311 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 G V S + + + F P EA Sbjct: 312 IAAARGRVAGSKLRLSGQREPGPVPSFHEHSDE-----------------------PAEA 348 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVE 203 V + L+ SG PP ++ ++ N Q E Sbjct: 349 ATVAASIARLIASGTPPSEVAILYRVNAQSE 379 >sw:UVRD_MYCBO Probable DNA helicase II homolog (EC 3.6.1.-). Mycobacterium bovis. Length = 700 Score = 38.3 bits (88), Expect = 0.009 Identities = 32/151 (21%), Positives = 47/151 (31%), Gaps = 33/151 (21%) Query: 55 LVGDHKQLPPTIKSKKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNL 112 +VGD Q TI S G +VVRL YR P++ L + + Sbjct: 260 VVGDANQ---TIYS-----FTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSLANRV 311 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 G V S + + + F P EA Sbjct: 312 IAAARGRVAGSKLRLSGQREPGPVPSFHEHSDE-----------------------PAEA 348 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVE 203 V + L+ SG PP ++ ++ N Q E Sbjct: 349 ATVAASIARLIASGTPPSEVAILYRVNAQSE 379 >sw:POLN_RRVN Nonstructural polyprotein [Contains: Nonstructural protein NSP1; Nonstructural protein NSP2; Nonstructural protein NSP3; Nonstructural protein NSP4]. Ross river virus (strain NB5092) (RRV). Length = 2479 Score = 37.9 bits (87), Expect = 0.010 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQ 61 + + +DEA LI ++ K IL GD KQ Sbjct: 780 ENLYVDEAFACHSGTLLALIAMVKPTGKVILCGDPKQ 816 >sw:PCRA_LEUCI ATP-dependent DNA helicase pcrA (EC 3.6.1.-). Leuconostoc citreum. Length = 749 Score = 37.9 bits (87), Expect = 0.011 Identities = 34/192 (17%), Positives = 56/192 (29%), Gaps = 35/192 (18%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLLLA--KKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + +F+ + +DE +A+ I LLA K +VGD Q + A + Sbjct: 213 QQQFEYLHVDEYQDTNDAQYTIVNLLAQRSKNLAVVGDADQ--SIYGWRG----ANMNNI 266 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 L V L YR I + + N Sbjct: 267 LNFEKDYPNAHTVMLEQNYRSTQNILDAANAVINHNNE---------------------- 304 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPP-EDIGVITPYN 199 VP +G ++ + EA F++ ++ L + D V+ N Sbjct: 305 ----RVPKKLWTENGKGDQITYYRAQTEHDEANFILSNIQQLRETKHMAYSDFAVLYRTN 360 Query: 200 GQVELIRNILNS 211 Q I L Sbjct: 361 AQSRNIEESLVK 372 >sw:POLN_SINDV Nonstructural polyprotein (P270) [Contains: Nonstructural protein NSP1; Nonstructural protein NSP2; Nonstructural protein NSP3; Nonstructural protein NSP4]. Sindbis virus (strain HRSP). Length = 2512 Score = 37.9 bits (87), Expect = 0.012 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 27 DVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 +V+ +DEA A LI ++ +KK +L GD Q Sbjct: 787 EVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQ 823 >sw:EX5B_CHLMU Exodeoxyribonuclease V beta chain (EC 3.1.11.5). Chlamydia muridarum. Length = 1026 Score = 37.5 bits (86), Expect = 0.015 Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 11/142 (7%) Query: 22 EKFKFDVVIIDE-----AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAG 76 + +F +V+IDE Q L L+GD KQ S A Sbjct: 359 LRKQFQLVLIDEFQDTDKRQWKIFSKLFASPDYSGSLFLIGDPKQ------SIYEWRNAD 412 Query: 77 LEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANP 136 L L + S + L+ YR P++ + ++LF + ++ S Sbjct: 413 LPTYLQAKNSFPKESQLILDTNYRSTPQLMQALNHLFSLPSPFLETPQTILYHPLQSKGS 472 Query: 137 GFFPTPQFIVPLSFVDNSGVEE 158 +F F EE Sbjct: 473 ASTSYSEFRPIHFFTTQDSQEE 494 >sw:RPOA_LDVP Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-beta); Nsp2 cysteine proteinase (EC 3.4.22.-) (CP2) (CP); Nonstructural protein 3 (Nsp3); 3C-like serine proteinase (3.4.21.-) (3CLSP) (Nsp4); Nonstructural protein 5- 6-7 (Nsp5-6-7); Nonstructural protein 8 (Nsp8); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (Nsp9); Helicase (EC 3.6.1.-) (Hel) (Nsp10); Nonstructural protein 11 (Nsp11); Nonstructural protein 12 (Nsp12)]. Lactate dehydrogenase elevating virus (strain Plagemann) (LDV). Length = 3616 Score = 37.1 bits (85), Expect = 0.020 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 31 IDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGL 77 +DEAA + L L + VGD QLPP + A + + Sbjct: 3067 LDEAAYCNPLDVLKVLSKTP--LVCVGDLNQLPPVGFNGPCFAFSLM 3111 >sw:TRAA_AGRT5 Conjugal transfer protein traA. Agrobacterium tumefaciens (strain C58 / ATCC 33970). Length = 1100 Score = 36.0 bits (82), Expect = 0.040 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 10/85 (11%) Query: 28 VVIIDEAAQAL---EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 V ++DEA A + ++ A K +LVGD +QL P ++ +R Sbjct: 471 VFVMDEAGMVASKQMAGFVDAVVRAGAKIVLVGDPEQLQPI-------EAGAAFRAIVDR 523 Query: 85 LVELGVSVVRLNVQYRMHPEICRLP 109 + + + + M L Sbjct: 524 IGYAELETIYRQREDWMRKASLDLA 548 >sw:VGL2_CVBQ E2 glycoprotein precursor (Spike glycoprotein) (Peplomer protein) [Contains: Spike protein S1 (90B); Spike protein S2 (90A)]. Bovine coronavirus (strain Quebec) (BCoV) (BCV). Length = 1363 Score = 35.6 bits (81), Expect = 0.063 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF L LNVQYR++ Sbjct: 957 KVLPPLLSVNQISGYTLAATSASLFPPLSAAVGVPFYLNVQYRIN 1001 >sw:VGL2_CVBM E2 glycoprotein precursor (Spike glycoprotein) (Peplomer protein) [Contains: Spike protein S1 (90B); Spike protein S2 (90A)]. Bovine coronavirus (strain Mebus) (BCoV) (BCV). Length = 1363 Score = 35.6 bits (81), Expect = 0.064 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF L LNVQYR++ Sbjct: 957 KVLPPLLSVNQISGYTLAATSASLFPPLSAAVGVPFYLNVQYRIN 1001 >sw:RPOA_PRRSL Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-beta); Nsp2 cysteine proteinase (EC 3.4.22.-) (CP2) (CP); Nonstructural protein 3 (Nsp3); 3C-like serine proteinase (3.4.21.-) (3CLSP) (Nsp4); Nonstructural protein 5- 6-7 (Nsp5-6-7); Nonstructural protein 8 (Nsp8); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (Nsp9); Helicase (EC 3.6.1.-) (Hel) (Nsp10); Nonstructural protein 11 (Nsp11); Nonstructural protein 12 (Nsp12)]. Porcine reproductive and respiratory syndrome virus (strain Lelystad) (PRRSV). Length = 3859 Score = 35.2 bits (80), Expect = 0.069 Identities = 22/128 (17%), Positives = 38/128 (29%), Gaps = 16/128 (12%) Query: 31 IDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGV 90 +DEA + L LL+K + +GD +QL P + Sbjct: 3265 LDEAGYCNHLDILR--LLSKTPLVCLGDLQQLHPVGFDSYCYVFDQM------------- 3309 Query: 91 SVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISS-VARRLEYDSANPGFFPTPQFIVPLS 149 +L YR P IC + E ++ V + P + + + Sbjct: 3310 PQKQLTTIYRFGPNICAAIQPCYREKLESKARNTRVVFTTRPVAFGQVLTPYHKDRIGSA 3369 Query: 150 FVDNSGVE 157 +S Sbjct: 3370 ITIDSSQG 3377 >sw:EX5B_CHLTR Exodeoxyribonuclease V beta chain (EC 3.1.11.5). Chlamydia trachomatis. Length = 1026 Score = 34.8 bits (79), Expect = 0.092 Identities = 29/154 (18%), Positives = 48/154 (31%), Gaps = 11/154 (7%) Query: 10 TGAASKRKSLALEKFKFDVVIIDE-----AAQALEAECLIPLLLAKKKFILVGDHKQLPP 64 + A ++ + +F +V+IDE Q L L+GD KQ Sbjct: 347 SLLAHNDTVVSQLRKQFQLVLIDEFQDTDKRQWQIFSKLFASPDYSGSLFLIGDPKQ--- 403 Query: 65 TIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISS 124 S A L L + + + L+ YR PE+ + ++LF ++ Sbjct: 404 ---SIYEWRNADLPTYLQAKHSFPKEAQLILDTNYRSTPELMQALNHLFSLPTPFLETPQ 460 Query: 125 VARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEE 158 S +F F EE Sbjct: 461 NILYHPLHSKGSAEISYSEFSPIHFFSSEDIQEE 494 >sw:EX5A_BUCBP Exodeoxyribonuclease V alpha chain (EC 3.1.11.5). Buchnera aphidicola (subsp. Baizongia pistaciae). Length = 618 Score = 34.4 bits (78), Expect = 0.14 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Query: 24 FKFDVVIIDEAAQA--LEAECLIPLLLAKKKFILVGDHKQLPPT 65 + +++IIDEA+ + LI + K I +GD+ QLP Sbjct: 264 YNLNLLIIDEASMIDITIMDKLISSIPKTTKIIFLGDYNQLPSI 307 >sw:TRAA_RHISN Probable conjugal transfer protein traA. Rhizobium sp. (strain NGR234). Length = 1102 Score = 34.4 bits (78), Expect = 0.14 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%) Query: 30 IIDEAAQAL---EAECLIPLLLAKKKFILVGDHKQLPPT 65 ++DEA A + A K +LVGD +QL P Sbjct: 473 VLDEAGMVSSRQMALFVETATKAGAKLVLVGDPEQLQPI 511 >sw:CYSC_BUCAI Adenylyl-sulfate kinase (EC 2.7.1.25) (APS kinase) (Adenosine- 5'phosphosulfate kinase) (ATP adenosine-5'-phosphosulfate 3'- phosphotransferase). Buchnera aphidicola (subsp. Acyrthosiphon pisum) (Acyrthosiphon pisum symbiotic bacterium). Length = 206 Score = 34.0 bits (77), Expect = 0.15 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 8/62 (12%) Query: 162 EGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVS 221 + + GE +V+ +L +G+ + VI+PY Q E++R +L + L V + Sbjct: 83 RNENIRRIGE------VVKMMLHAGLIIL-VSVISPYRNQREMVRQMLGKKNFL-EVFID 134 Query: 222 TV 223 T Sbjct: 135 TP 136 >sw:VGL2_CVHOC E2 glycoprotein precursor (Spike glycoprotein) (Peplomer protein) [Contains: Spike protein S1 (90B); Spike protein S2 (90A)]. Human coronavirus (strain OC43) (HCoV-OC43). Length = 1353 Score = 34.0 bits (77), Expect = 0.17 Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 15/92 (16%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH-------------PE 104 K LPP + + + A SLF LNVQYR++ Sbjct: 947 KVLPPLLSENQISGYTLAATSASLFPPWTAAAGVPFYLNVQYRINGLGVTMDVLSQNQKL 1006 Query: 105 ICRLPSNLFYEGNGLVDISSVARRLEYDSANP 136 I +N Y D ++ A N Sbjct: 1007 IANAFNNALYAIQEGFDATNSALVKIQAVVNA 1038 >sw:ACDG2_METTE Acetyl-CoA decarbonylase/synthase complex gamma subunit 2 (EC 2.1.1.-) (ACDS complex gamma subunit 2) (ACDS complex methyltransferase 2) (Corrinoid/iron-sulfur component large subunit 2). Methanosarcina thermophila. Length = 468 Score = 34.0 bits (77), Expect = 0.17 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 20/110 (18%) Query: 34 AAQALEAECLIPLLLAKKKFILV---GDHKQLPPTIKSKKAAAKAGLEESLFERLVEL-- 88 + EA C+ L+ G Q PP +K KK A K E L + Sbjct: 18 CGECGEATCMAFASK------LIDRSGKPTQCPPLVKEKKFAKKLAELERLLAPEIREIT 71 Query: 89 ------GVSVVRLNVQYRMHPEICRLPS-NLFYEGNGLVDISSVARRLEY 131 V + +V YR ++ +FY+ +D +++ R + Sbjct: 72 IGVGDRAVKIGGDDVLYR--HKLTFFNKTKMFYDVTDTMDEAALLERTKK 119 >sw:Y1519_METJA Hypothetical protein MJ1519. Methanococcus jannaschii. Length = 1175 Score = 34.0 bits (77), Expect = 0.19 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%) Query: 23 KFKFDVVIIDEAAQALEAE---CLIPLLLAKKK-FILVGDHKQLPPT 65 K + D +IIDE++ L + L K I VGD QLPP Sbjct: 668 KKEIDALIIDESSMVDIETMGRLLGTIKLDNLKYLIFVGDINQLPPV 714 >sw:RPOA_LDVC Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-beta); Nsp2 cysteine proteinase (EC 3.4.22.-) (CP2) (CP); Nonstructural protein 3 (Nsp3); 3C-like serine proteinase (3.4.21.-) (3CLSP) (Nsp4); Nonstructural protein 5- 6-7 (Nsp5-6-7); Nonstructural protein 8 (Nsp8); RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (Pol) (Nsp9); Helicase (EC 3.6.1.-) (Hel) (Nsp10); Nonstructural protein 11 (Nsp11); Nonstructural protein 12 (Nsp12)]. Lactate dehydrogenase elevating virus (strain C) (LDV). Length = 3637 Score = 33.6 bits (76), Expect = 0.20 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%) Query: 31 IDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGL 77 +DEAA + L L + VGD QLPP A A + Sbjct: 3088 LDEAAYCNPLDVLKILSKTP--LVCVGDLNQLPPVDFIGPCYAFALM 3132 >sw:EX5A_HAEIN Exodeoxyribonuclease V alpha chain (EC 3.1.11.5). Haemophilus influenzae. Length = 640 Score = 33.6 bits (76), Expect = 0.22 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 15/139 (10%) Query: 27 DVVIIDEAAQALEA--ECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 DV+++DE + LI L + + IL+GD QL + A L + + + Sbjct: 290 DVLVVDETSMIDLPMMAKLINALKPETRLILLGDQAQLASV---EAGAVLGELAQFVTQP 346 Query: 85 LVELGVSVVRLNVQYR---------MHPEICRLP-SNLFYEGNGLVDISSVARRLEYDSA 134 + + Y+ + +C L S F + +G+ +S ++ + D + Sbjct: 347 YSHEQAAYLLATTGYKVEGSDCSNPIRDCLCHLTESRRFDKDSGIGKLSEFIQKGKADDS 406 Query: 135 NPGFFPTPQFIVPLSFVDN 153 F PQ + S D Sbjct: 407 LELFDHYPQELHFNSLNDE 425 >sw:FBX18_HUMAN F-box only protein 18 (EC 3.6.1.-) (F-box DNA helicase 1). Homo sapiens (Human). Length = 1043 Score = 33.6 bits (76), Expect = 0.24 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%) Query: 25 KFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 FD + +DEA A I L K I VGD Q Sbjct: 640 SFDAIFVDEAQDCTPAIMNIVLSQPCGK-IFVGDPHQ 675 >sw:VGL2_CVBV E2 glycoprotein precursor (Spike glycoprotein) (Peplomer protein) [Contains: Spike protein S1 (90B); Spike protein S2 (90A)]. Bovine coronavirus (strain vaccine) (BCoV) (BCV). Length = 1363 Score = 33.3 bits (75), Expect = 0.28 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF LNVQYR++ Sbjct: 957 KVLPPLLSVNQISGYTLAATSASLFPPWSAAAGVPFYLNVQYRIN 1001 >sw:VGL2_CVBL9 E2 glycoprotein precursor (Spike glycoprotein) (Peplomer protein) [Contains: Spike protein S1 (90B); Spike protein S2 (90A)]. Bovine coronavirus (strain L9) (BCoV) (BCV). Length = 1363 Score = 33.3 bits (75), Expect = 0.28 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF LNVQYR++ Sbjct: 957 KVLPPLLSVNQISGYTLAATSASLFPPWSAAAGVPFYLNVQYRIN 1001 >sw:FBX18_MOUSE F-box only protein 18 (EC 3.6.1.-) (F-box DNA helicase 1). Mus musculus (Mouse). Length = 1042 Score = 33.3 bits (75), Expect = 0.28 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%) Query: 25 KFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 FD + +DEA A I L K I VGD Q Sbjct: 639 SFDAIFVDEAQDCTPAIMNIVLSQPCGK-IFVGDPHQ 674 >sw:TRAA_AGRTU Conjugal transfer protein traA. Agrobacterium tumefaciens. Length = 1100 Score = 33.3 bits (75), Expect = 0.33 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%) Query: 30 IIDEAAQAL---EAECLIPLLLAKKKFILVGDHKQLPPT 65 I+DEA A + + A K +LVGD +QL P Sbjct: 473 IMDEAGMVASKQMAGFVDTAVRAGAKIVLVGDPEQLQPI 511 >sw:VGL2_CVBLY E2 glycoprotein precursor (Spike glycoprotein) (Peplomer protein) [Contains: Spike protein S1 (90B); Spike protein S2 (90A)]. Bovine coronavirus (strain LY-138) (BCoV) (BCV). Length = 1363 Score = 32.9 bits (74), Expect = 0.37 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF LNVQYR++ Sbjct: 957 KVLPPLLSENQISGYTLAATSASLFPPWSAAAGVPFYLNVQYRIN 1001 >sw:VGL2_CVBF E2 glycoprotein precursor (Spike glycoprotein) (Peplomer protein) [Contains: Spike protein S1 (90B); Spike protein S2 (90A)]. Bovine coronavirus (strain F15) (BCoV) (BCV). Length = 1363 Score = 32.9 bits (74), Expect = 0.37 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF LNVQYR++ Sbjct: 957 KVLPPLLSENQISGYTLAATSASLFPPWSAAAGVPFYLNVQYRIN 1001 >sw:EX5B_ECOLI Exodeoxyribonuclease V beta chain (EC 3.1.11.5) (Exodeoxyribonuclease V 135 kDa polypeptide). Escherichia coli. Length = 1180 Score = 32.1 bits (72), Expect = 0.58 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 14/99 (14%) Query: 25 KFDVVIIDEAAQALEAECLIPLLL-----AKKKFILVGDHKQLPPTIKSKKAAAKAGLEE 79 +F V +IDE Q + + + +L+GD KQ + A ++ Sbjct: 377 RFPVAMIDE-FQDTDPQQYRIFRRIWHHQPETALLLIGDPKQ--AIYAFRGADIFTYMKA 433 Query: 80 SLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNG 118 + L+ +R P + + LF + + Sbjct: 434 R------SEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDD 466 >sw:UVRD_HAEIN DNA helicase II (EC 3.6.1.-). Haemophilus influenzae. Length = 727 Score = 31.7 bits (71), Expect = 0.78 Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 37/190 (19%) Query: 23 KFKFDVVIIDEAAQALEAE-CLIPLLLAKK-KFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + +F +++DE + + I +L K + ++VGD Q + A E+ Sbjct: 216 QQRFQHILVDEFQDTNKIQYKWIKILAGKTGQVMIVGDDDQ--SIYGWRGAQ-----IEN 268 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 + + L + +RL YR I + L +S G Sbjct: 269 IQKFLKDFKAETIRLEQNYRSTANILNSANELI----------------ANNSDRLGKNL 312 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQN-PGEAEFVVEIVEYLLRSGVPPEDIGVITPYN 199 + YS N EA+FV ++ + G +D V+ N Sbjct: 313 WTEGEKGDPVGI-----------YSAFNELDEAKFVASQIQDWVEHGGKLDDCAVLYRSN 361 Query: 200 GQVELIRNIL 209 Q +I L Sbjct: 362 SQSRVIEEAL 371 Database: /export/scratch/database/MYHITS2/sw.69 Posted date: Jun 15, 2005 7:24 PM Number of letters in database: 66,619,967 Number of sequences in database: 184,304 Lambda K H 0.314 0.159 0.429 Lambda K H 0.267 0.0485 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,271,911 Number of Sequences: 184304 Number of extensions: 1624805 Number of successful extensions: 4715 Number of sequences better than 1.0: 97 Number of HSP's better than 1.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 60 Number of HSP's that attempted gapping in prelim test: 4436 Number of HSP's gapped (non-prelim): 130 length of query: 258 length of database: 16,252,624 effective HSP length: 76 effective length of query: 182 effective length of database: 16,252,624 effective search space: 2957977568 effective search space used: 2957977568 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 71 (31.7 bits) SIB BLAST network server version 1.6 of November 26, 2002 compiled by GNU C version 3.2.3 20030502 (Red Hat Linux 3.2.3-49) compiled on Feb 1 2005. Welcome to the SIB BLAST Network Service (noko01) ============================================================================== Swiss Institute of Bioinformatics (SIB) Ludwig Institute for Cancer Research (LICR) Swiss Institute for Experimental Cancer Research (ISREC) ============================================================================== If results of this search are reported or published, please mention that the computation was performed at the SIB using the BLAST network service. PEPTIDE SEQUENCE DATABASES swiss SwissProt + updates 14-Jul-2004 swisstrembl SwissProt+Trembl+TrUpdates 14-Jul-2004 nr Non-redundant SP+Trembl+TrUpdates+gp 14-Jul-2004 shuffled SwissProt r30 shuffled in windows of 20 aa yeast S.cerevisiae translated genome ORFs NUCLEOTIDE SEQUENCE DATABASES embre * EMBL Data Library, Release 79, June 2004 embu * EmblUpdate 14-Jul-2004 embl * EMBL+EmblUpdate 14-Jul-2004 nr * Synonym to embl (and actually redundant). 14-Jul-2004 EST Database of Expressed Sequence Tags 14-Jul-2004 GSS Genome Survey Sequences 14-Jul-2004 HTG High-thruput Genomic Sequences 14-Jul-2004 STS Database of Sequence Tagged Sites 14-Jul-2004 repbase Repbase, August 04, 2002 simple Simple sequence repeats (J. Mol. Evol. 40:120, 1995) yeast S.cerevisiae genome worm C.elegans genome * The est, gss, htg, and sts divisions of EMBL are excluded from these databases. ============================================================================ The BLAST Network Service uses a server developed at SIB and the NCBI BLAST 2 software. For problems regarding this site, please contact one of the following persons: - problems with the programs: Christian Iseli (Christian.Iseli@licr.org) Giovanna Ambrosini (giovanna.ambrosini@isb-sib.ch) - problems with the databases: Victor Jongeneel (Victor.Jongeneel@isb-sib.ch) Laurent Falquet (Laurent.Falquet@isrec.unil.ch) ============================================================================ BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= consensus (258 letters) Database: /export/scratch/database/MYHITS2/tr.66 1,779,481 sequences; 567,248,508 total letters [blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file [blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr:Q51N50_MAGGR Hypothetical protein. Magnaporthe grisea 70-15. 302 3e-82 tr:Q8TFW3_ASPFU Possible regulator of nonsense transcripts. Aspe... 300 2e-81 tr:Q6MYI2_ASPFU Regulator of nonsense transcripts, putative. Asp... 300 2e-81 tr:Q5BFN4_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. 300 2e-81 tr:Q6CW68_KLULA Kluyveromyces lactis strain NRRL Y-1140 chromoso... 296 2e-80 tr:Q8S3K7_ARATH UPF1 (Fragment). Arabidopsis thaliana (Mouse-ear... 289 3e-78 tr:Q75DS7_ASHGO ABR022Cp. Ashbya gossypii (Yeast) (Eremothecium ... 288 5e-78 tr:Q69VT5_ORYSA Putative type 1 RNA helicase. Oryza sativa (japo... 287 1e-77 tr:Q5KKH8_CRYNE ATP dependent helicase, putative. Cryptococcus n... 285 6e-77 tr:Q55VR1_CRYNE Hypothetical protein. Cryptococcus neoformans va... 285 6e-77 tr:Q5A507_CANAL Hypothetical protein NAM7. Candida albicans SC5314. 284 1e-76 tr:Q6FVZ1_CANGA Candida glabrata strain CBS138 chromosome D comp... 284 1e-76 tr:Q7Q257_ANOGA ENSANGP00000014389 (Fragment). Anopheles gambiae... 283 2e-76 tr:Q6BPM3_DEBHA Debaryomyces hansenii chromosome E of strain CBS... 280 1e-75 tr:Q9VGG9_DROME CG31368-PA, isoform A. Drosophila melanogaster (... 280 2e-75 tr:Q7KSN8_DROME CG31368-PB, isoform B. Drosophila melanogaster (... 280 2e-75 tr:Q7YU45_DROME RE35509p. Drosophila melanogaster (Fruit fly). 280 2e-75 tr:Q8MQK8_DROME GM03621p (Fragment). Drosophila melanogaster (Fr... 280 2e-75 tr:Q8MSA2_DROME LP02069p. Drosophila melanogaster (Fruit fly). 279 3e-75 tr:Q6C803_YARLI Yarrowia lipolytica chromosome D of strain CLIB9... 276 2e-74 tr:Q7ZVZ4_BRARE Regulator of nonsense transcripts 1. Brachydanio... 274 8e-74 tr:Q6GYP5_MOUSE RENT1. Mus musculus (Mouse). 274 1e-73 tr:Q8K0N4_MOUSE Rent1 protein (Fragment). Mus musculus (Mouse). 274 1e-73 tr:Q6PHQ5_MOUSE Rent1 protein. Mus musculus (Mouse). 274 1e-73 tr:Q6GNR2_XENLA MGC80941 protein. Xenopus laevis (African clawed... 274 1e-73 tr:Q9EQN5_RAT Antifreeze-enhancer binding protein AEP. Rattus no... 272 3e-73 tr:Q6PIC8_HUMAN AQR protein (Fragment). Homo sapiens (Human). 269 4e-72 tr:Q54I89_DICDI Hypothetical protein. Dictyostelium discoideum (... 268 4e-72 tr:Q80TX8_MOUSE MKIAA0560 protein (Fragment). Mus musculus (Mouse). 268 7e-72 tr:Q582F1_9TRYP Regulator of nonsense transcripts 1, putative. T... 268 7e-72 tr:O60306_HUMAN KIAA0560 protein (Fragment). Homo sapiens (Human). 268 7e-72 tr:Q8CFQ3_MOUSE Aquarius. Mus musculus (Mouse). 268 7e-72 tr:Q7PWZ4_ANOGA ENSANGP00000004153 (Fragment). Anopheles gambiae... 267 1e-71 tr:Q5ZHN2_CHICK Hypothetical protein. Gallus gallus (Chicken). 266 3e-71 tr:Q61MG2_CAEBR Hypothetical protein CBG08494. Caenorhabditis br... 262 4e-70 tr:Q7SBU3_NEUCR Hypothetical protein. Neurospora crassa. 260 2e-69 tr:Q8IJY4_PLAF7 Regulator of nonsense transcripts, putative. Pla... 260 2e-69 tr:Q52EB1_MAGGR Hypothetical protein. Magnaporthe grisea 70-15. 254 9e-68 tr:O67840_AQUAE DNA helicase. Aquifex aeolicus. 253 2e-67 tr:Q7TP99_RAT Ab1-133. Rattus norvegicus (Rat). 253 2e-67 tr:Q6AVE6_ORYSA Putative aquarius. Oryza sativa (japonica cultiv... 251 7e-67 tr:Q9U1Q7_CAEEL Hypothetical protein Y80D3A.2. Caenorhabditis el... 251 8e-67 tr:Q9UZB6_PYRAB DNA helicase, putative. Pyrococcus abyssi. 250 2e-66 tr:Q7RQ16_PLAYO Nonsense mRNA reducing factor 1-related. Plasmod... 247 1e-65 tr:Q8L5Y4_ARATH Hypothetical protein At2g38770. Arabidopsis thal... 245 6e-65 tr:Q9ZVJ8_ARATH Hypothetical protein At2g38770. Arabidopsis thal... 245 6e-65 tr:Q5AXG6_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. 242 6e-64 tr:Q8IDH3_PLAF7 Hypothetical protein PF13_0273. Plasmodium falci... 240 2e-63 tr:O27671_METTH Transcriptional control factor (Enhancer-binding... 239 2e-63 tr:Q8SR02_ENCCU INVOLVED IN mRNA DECAY CONTROL (DNA2/NAM7 HELICA... 238 9e-63 tr:Q6F2U8_ORYSA Putative DNA helicase. Oryza sativa (japonica cu... 237 2e-62 tr:Q9WXM0_THEMA DNA helicase, putative. Thermotoga maritima. 234 8e-62 tr:Q8U398_PYRFU Dna2-nam7 helicase family protein. Pyrococcus fu... 232 4e-61 tr:Q5JFK3_PYRKO DNA helicase, UvrD/REP family. Pyrococcus kodaka... 232 5e-61 tr:O58624_PYRHO 656aa long hypothetical DNA-binding protein. Pyr... 232 7e-61 tr:Q9FGV0_ARATH Gb|AAD48967.1. Arabidopsis thaliana (Mouse-ear c... 230 1e-60 tr:Q20371_CAEEL Hypothetical protein dna-2. Caenorhabditis elegans. 230 2e-60 tr:Q7PP43_ANOGA ENSANGP00000013515. Anopheles gambiae str. PEST. 230 2e-60 tr:Q9FNX9_ARATH Putative helicase. Arabidopsis thaliana (Mouse-e... 229 3e-60 tr:O81047_ARATH Putative helicase. Arabidopsis thaliana (Mouse-e... 229 3e-60 tr:Q9U3F2_CAEEL Hypothetical protein dna-2. Caenorhabditis elegans. 228 5e-60 tr:Q8TZ69_METKA Superfamily I DNA/RNA helicase. Methanopyrus kan... 228 6e-60 tr:O28883_ARCFU DNA helicase, putative. Archaeoglobus fulgidus. 228 6e-60 tr:Q51D15_ENTHI Regulator of nonsense transcripts 1, putative. E... 228 8e-60 tr:Q7UWP1_RHOBA DNA-binding protein SMUBP-2. Rhodopirellula balt... 225 4e-59 tr:Q86IX9_DICDI Similar to Arabidopsis thaliana (Mouse-ear cress... 225 6e-59 tr:Q555Z2_DICDI Hypothetical protein. Dictyostelium discoideum (... 224 1e-58 tr:Q9FHU9_ARATH Similarity to nonsense-mediated mRNA decay trans... 224 1e-58 tr:Q7QU62_GIALA GLP_226_38825_42739. Giardia lamblia ATCC 50803. 224 1e-58 tr:Q75JA0_DICDI Similar to Rattus norvegicus (Rat). Antifreeze-e... 222 3e-58 tr:Q6CFH6_YARLI Similar to sp|P34243 Saccharomyces cerevisiae YK... 222 6e-58 tr:Q5Z4Y8_ORYSA Regulator of nonsense transcripts 1-like. Oryza ... 220 1e-57 tr:Q7PNU2_ANOGA ENSANGP00000020616 (Fragment). Anopheles gambiae... 219 3e-57 tr:Q8QHA5_XENLA Helicase. Xenopus laevis (African clawed frog). 219 3e-57 tr:Q6BWT0_DEBHA Debaryomyces hansenii chromosome B of strain CBS... 219 4e-57 tr:Q7XH59_ORYSA Putative DNA2-NAM7 helicase family protein. Oryz... 218 4e-57 tr:Q8W5K9_ORYSA Putative DNA2-NAM7 helicase family protein. Oryz... 218 4e-57 tr:Q5AVM8_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. 218 5e-57 tr:Q9FHU7_ARATH Similarity to nonsense-mediated mRNA decay trans... 218 6e-57 tr:Q7RKP6_PLAYO SEN1-related. Plasmodium yoelii yoelii. 218 9e-57 tr:Q9FJ83_ARATH Similarity to nonsense-mediated mRNA decay trans... 217 1e-56 tr:Q5K8R4_CRYNE DNA helicase, putative. Cryptococcus neoformans ... 217 1e-56 tr:Q55M05_CRYNE Hypothetical protein. Cryptococcus neoformans va... 217 1e-56 tr:Q8IET9_PLAF7 Hypothetical protein MAL13P1.13. Plasmodium falc... 216 2e-56 tr:O94387_SCHPO SPBC29A10.10c protein. Schizosaccharomyces pombe... 216 2e-56 tr:Q851T6_ORYSA Putative component of a tRNA splicing complex. O... 216 2e-56 tr:Q9FHU6_ARATH Similarity to DNA helicase. Arabidopsis thaliana... 216 4e-56 tr:Q51LV7_MAGGR Hypothetical protein. Magnaporthe grisea 70-15. 215 4e-56 tr:Q7S1L9_NEUCR Hypothetical protein. Neurospora crassa. 215 4e-56 tr:Q9HFI5_NEUCR Related to SEN1 protein. Neurospora crassa. 215 7e-56 tr:Q9S9W3_ARATH T1J24.4 protein (AT4g05540 protein). Arabidopsis... 215 8e-56 tr:Q5ANG6_CANAL Potential nuclear RNA processing factor. Candida... 214 1e-55 tr:Q8R3J3_MOUSE Dna2l protein (Fragment). Mus musculus (Mouse). 213 2e-55 tr:Q6ZQJ5_MOUSE MKIAA0083 protein (Fragment). Mus musculus (Mouse). 213 2e-55 tr:Q86D36_DROME LD18775p. Drosophila melanogaster (Fruit fly). 213 2e-55 tr:Q8BSZ0_MOUSE Mus musculus 18 days pregnant adult female place... 213 3e-55 tr:Q8IRL9_DROME CG2990-PB, isoform B. Drosophila melanogaster (F... 213 3e-55 tr:Q9W2Z4_DROME CG2990-PA, isoform A. Drosophila melanogaster (F... 213 3e-55 tr:Q6BK27_DEBHA Similar to CA3215|CaHCS1 Candida albicans CaHCS1... 212 4e-55 tr:Q61ZG1_CAEBR Hypothetical protein CBG03123. Caenorhabditis br... 212 4e-55 tr:Q86AS0_DICDI Similar to Neurospora crassa. Related to SEN1 pr... 211 6e-55 tr:Q7LIE9_YEAST Sen1p (Fragment). Saccharomyces cerevisiae (Bake... 211 1e-54 tr:Q6CWA6_KLULA Kluyveromyces lactis strain NRRL Y-1140 chromoso... 210 2e-54 tr:Q6YVI6_ORYSA Putative DNA helicase. Oryza sativa (japonica cu... 210 2e-54 tr:Q6BGI0_PARTE TRNA-splicing endonuclease positive effector, pu... 210 2e-54 tr:Q9SHX6_ARATH F1E22.16. Arabidopsis thaliana (Mouse-ear cress). 210 2e-54 tr:Q9SZW3_ARATH Hypothetical protein F6G3.130 (Hypothetical prot... 210 3e-54 tr:Q528Z3_MAGGR Hypothetical protein. Magnaporthe grisea 70-15. 209 4e-54 tr:Q7XUD5_ORYSA OSJNBa0088A01.10 protein. Oryza sativa (japonica... 208 5e-54 tr:O64476_ARATH Putative DNA2-NAM7 helicase family protein. Arab... 208 6e-54 tr:Q6ZU11_HUMAN Hypothetical protein FLJ44066. Homo sapiens (Hum... 208 9e-54 tr:Q9FGC2_ARATH DNA helicase-like. Arabidopsis thaliana (Mouse-e... 207 1e-53 tr:Q75CL7_ASHGO ACL098Cp. Ashbya gossypii (Yeast) (Eremothecium ... 207 1e-53 tr:Q5TC49_HUMAN DNA2 DNA replication helicase 2-like (Yeast). Ho... 207 2e-53 tr:Q55J08_CRYNE Hypothetical protein. Cryptococcus neoformans va... 207 2e-53 tr:Q6CMS3_KLULA Similar to sp|P34243 Saccharomyces cerevisiae YK... 207 2e-53 tr:Q5KCP4_CRYNE Hypothetical protein. Cryptococcus neoformans (F... 206 2e-53 tr:Q5ASQ9_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. 206 4e-53 tr:Q5KBY0_CRYNE DNA helicase, putative. Cryptococcus neoformans ... 206 4e-53 tr:Q55NJ4_CRYNE Hypothetical protein. Cryptococcus neoformans va... 206 4e-53 tr:Q5KGD7_CRYNE DNA replication helicase dna2, putative. Cryptoc... 206 4e-53 tr:Q55RY5_CRYNE Hypothetical protein. Cryptococcus neoformans va... 206 4e-53 tr:Q7Z6H9_HUMAN DNA2L protein (Fragment). Homo sapiens (Human). 205 4e-53 tr:Q6FK55_CANGA Candida glabrata strain CBS138 chromosome M comp... 205 4e-53 tr:Q6PI80_HUMAN DNA2L protein (Fragment). Homo sapiens (Human). 205 5e-53 tr:Q8BQU5_MOUSE Mus musculus adult male corpora quadrigemina cDN... 205 6e-53 tr:Q5TGD5_HUMAN OTTHUMP00000028556. Homo sapiens (Human). 205 8e-53 tr:Q5TC50_HUMAN DNA2 DNA replication helicase 2-like (Yeast) (Fr... 204 1e-52 tr:Q8N346_HUMAN Hypothetical protein (Fragment). Homo sapiens (H... 204 1e-52 tr:Q6EU00_ORYSA TRNA-splicing endonuclease positive effector-lik... 203 2e-52 tr:Q9FWR3_ARATH F17F16.1 protein. Arabidopsis thaliana (Mouse-ea... 203 2e-52 tr:O94247_SCHPO SPCC737.07c protein. Schizosaccharomyces pombe (... 203 3e-52 tr:Q756Z8_ASHGO AER115Wp. Ashbya gossypii (Yeast) (Eremothecium ... 202 5e-52 tr:Q50M04_ENTHI Regulator of nonsense transcripts, putative. Ent... 201 8e-52 tr:Q8SVI3_ENCCU Similarity to HYPOTHETICAL ZINC FINGER PROTEINS ... 201 8e-52 tr:Q5B727_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. 201 9e-52 tr:Q5JUI9_HUMAN OTTHUMP00000064564. Homo sapiens (Human). 200 2e-51 tr:Q7QYL6_GIALA GLP_393_59373_57169. Giardia lamblia ATCC 50803. 200 2e-51 tr:Q6C3N5_YARLI Similar to sp|P38859 Saccharomyces cerevisiae YH... 200 2e-51 tr:Q758I0_ASHGO AEL218Wp. Ashbya gossypii (Yeast) (Eremothecium ... 200 2e-51 tr:Q6CAV3_YARLI Similar to tr|Q9VGG9 Drosophila melanogaster CG3... 200 2e-51 tr:Q5V4Z1_HALMA DNA binding protein eukaryotic-like. Haloarcula ... 200 2e-51 tr:Q9HNB7_HALN1 DNA binding protein eukaryotic-like. Halobacteri... 199 3e-51 tr:Q5JUJ1_HUMAN OTTHUMP00000022429 (Fragment). Homo sapiens (Hum... 199 3e-51 tr:Q6AZD7_HUMAN ALS4 protein (Fragment). Homo sapiens (Human). 199 4e-51 tr:Q5JUJ0_HUMAN OTTHUMP00000022428 (Fragment). Homo sapiens (Hum... 199 4e-51 tr:Q51PH8_MAGGR Hypothetical protein. Magnaporthe grisea 70-15. 199 5e-51 tr:Q59PZ8_CANAL Potential helicase, zinc finger protein. Candida... 198 6e-51 tr:Q6FQZ6_CANGA Similar to sp|P38859 Saccharomyces cerevisiae YH... 197 1e-50 tr:Q6FKP9_CANGA Similar to sp|P34243 Saccharomyces cerevisiae YK... 197 1e-50 tr:Q511Y2_ENTHI Regulator of nonsense transcripts, putative. Ent... 197 1e-50 tr:Q51H96_ENTHI TRNA splicing endonuclease, putative. Entamoeba ... 197 2e-50 tr:Q6NYU2_BRARE Helicase with zinc-finger domain. Brachydanio re... 196 2e-50 tr:Q6BIX7_DEBHA Similar to CA2652|CaDNA2 Candida albicans CaDNA2... 196 2e-50 tr:Q6IMG6_MOUSE Senataxin. Mus musculus (Mouse). 196 3e-50 tr:Q5CSY5_CRYPV Sen1p/ NAM7 like superfamily I RNA helicase. Cry... 196 3e-50 tr:Q7XUE1_ORYSA OSJNBa0088A01.4 protein. Oryza sativa (japonica ... 196 4e-50 tr:Q6CXV4_KLULA Similar to sp|P38859 Saccharomyces cerevisiae YH... 195 6e-50 tr:Q6PED8_MOUSE Amyotrophic lateral sclerosis 4 homolog. Mus mus... 195 7e-50 tr:Q80V90_MOUSE Als4 protein (Fragment). Mus musculus (Mouse). 195 8e-50 tr:Q8LNN4_ORYSA Putative helicase. Oryza sativa (japonica cultiv... 195 8e-50 tr:Q7XN16_ORYSA OSJNBb0016D16.17 protein. Oryza sativa (Rice). 195 9e-50 tr:Q72RC7_LEPIC Hypothetical protein. Leptospira interrogans (se... 194 1e-49 tr:Q8F4E3_LEPIN Putative helicase. Leptospira interrogans. 193 2e-49 tr:Q8IBF7_PLAF7 Regulator of nonsense transcripts 1 homologue, p... 193 2e-49 tr:Q6M931_NEUCR Related to DNA helicase. Neurospora crassa. 193 3e-49 tr:Q7S6A4_NEUCR Hypothetical protein. Neurospora crassa. 193 3e-49 tr:Q5CGV2_9CRYT SEN1 protein. Cryptosporidium hominis. 193 3e-49 tr:O28319_ARCFU DNA helicase, putative. Archaeoglobus fulgidus. 192 5e-49 tr:Q8IC35_PLAF7 Erythrocyte membrane-associated antigen. Plasmod... 191 6e-49 tr:Q516U5_ENTHI Regulator of nonsense transcripts, putative. Ent... 191 7e-49 tr:Q6LWX3_METMP Putative DNA helicase. Methanococcus maripaludis. 191 8e-49 tr:Q89BQ9_BRAJA Bll8089 protein. Bradyrhizobium japonicum. 191 1e-48 tr:Q50YA3_ENTHI Regulator of nonsense transcripts, putative. Ent... 190 2e-48 tr:Q50YI5_ENTHI Regulator of nonsense transcripts, putative. Ent... 190 2e-48 tr:Q7RRN6_PLAYO Nam7 protein (Fragment). Plasmodium yoelii yoelii. 189 3e-48 tr:Q7F941_ORYSA OSJNBb0088C09.17 protein. Oryza sativa (japonica... 189 4e-48 tr:Q7X684_ORYSA OSJNBa0035I04.7 protein. Oryza sativa (Rice). 189 4e-48 tr:Q517K4_ENTHI Regulator of nonsense transcripts, putative. Ent... 189 5e-48 tr:Q6BNH2_DEBHA Debaryomyces hansenii chromosome E of strain CBS... 188 1e-47 tr:Q8A613_BACTN Putative helicase. Bacteroides thetaiotaomicron. 187 1e-47 tr:Q74ZU0_ASHGO AGR108Cp. Ashbya gossypii (Yeast) (Eremothecium ... 186 2e-47 tr:Q64PT3_BACFR Putative helicase. Bacteroides fragilis. 186 3e-47 tr:Q5ZKG3_CHICK Hypothetical protein. Gallus gallus (Chicken). 186 3e-47 tr:Q8EA89_SHEON Hypothetical protein SO4019. Shewanella oneidensis. 185 5e-47 tr:Q5AAW1_CANAL Hypothetical protein HCS1. Candida albicans SC5314. 185 7e-47 tr:Q5V3H7_HALMA DNA helicase. Haloarcula marismortui (Halobacter... 183 3e-46 tr:Q6DFV5_MOUSE Helicase with zinc finger domain. Mus musculus (... 182 4e-46 tr:Q8CHI3_MOUSE MKIAA0054 protein (Fragment). Mus musculus (Mouse). 182 5e-46 tr:Q55F22_DICDI Hypothetical protein. Dictyostelium discoideum (... 181 1e-45 tr:Q54HF4_DICDI Hypothetical protein. Dictyostelium discoideum (... 181 1e-45 tr:Q7S2N1_NEUCR Hypothetical protein. Neurospora crassa. 180 2e-45 tr:Q5AWT4_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. 180 3e-45 tr:Q8BZZ6_MOUSE Mus musculus 15 days embryo male testis cDNA, RI... 179 4e-45 tr:Q922U3_MOUSE BC006779 protein (Fragment). Mus musculus (Mouse). 179 4e-45 tr:Q7KUL0_DROME CG9425-PB, isoform B. Drosophila melanogaster (F... 179 5e-45 tr:Q59RL2_CANAL Hypothetical protein DNA2. Candida albicans SC5314. 178 6e-45 tr:Q54HF3_DICDI Hypothetical protein. Dictyostelium discoideum (... 178 7e-45 tr:Q9AVZ7_GUITH Sen1 protein. Guillardia theta (Cryptomonas phi). 177 1e-44 tr:Q55EG2_DICDI Hypothetical protein. Dictyostelium discoideum (... 177 2e-44 tr:Q504Q7_HUMAN Hypothetical protein. Homo sapiens (Human). 177 2e-44 tr:Q55F23_DICDI Hypothetical protein. Dictyostelium discoideum (... 177 2e-44 tr:Q54XT3_DICDI Hypothetical protein. Dictyostelium discoideum (... 176 2e-44 tr:Q626N4_CAEBR Hypothetical protein CBG00906 (Fragment). Caenor... 176 2e-44 tr:Q69ZE2_MOUSE MKIAA1631 protein (Fragment). Mus musculus (Mouse). 176 4e-44 tr:Q7D8I6_MYCTU Hypothetical protein. Mycobacterium tuberculosis. 176 4e-44 tr:O50466_MYCTU Hypothetical protein. Mycobacterium tuberculosis. 176 4e-44 tr:Q7U0A3_MYCBO Hypothetical protein Mb1283c. Mycobacterium bovis. 176 4e-44 tr:Q6ZQ81_MOUSE MKIAA0625 protein (Fragment). Mus musculus (Mouse). 175 9e-44 tr:Q55F26_DICDI Hypothetical protein. Dictyostelium discoideum (... 174 1e-43 tr:Q6FKF3_CANGA Candida glabrata strain CBS138 chromosome L comp... 174 1e-43 tr:Q9SHX8_ARATH F1E22.14. Arabidopsis thaliana (Mouse-ear cress). 173 2e-43 tr:Q5JR04_HUMAN Mov10, Moloney leukemia virus 10, homolog (Mouse... 172 5e-43 tr:Q61XF9_CAEBR Hypothetical protein CBG03999. Caenorhabditis br... 172 6e-43 tr:Q5JR03_HUMAN Mov10, Moloney leukemia virus 10, homolog (Mouse... 172 6e-43 tr:Q9VSE1_DROME CG7504-PA. Drosophila melanogaster (Fruit fly). 171 8e-43 tr:Q86BR1_DROME CG6967-PB, isoform B. Drosophila melanogaster (F... 170 3e-42 tr:Q8MRI1_DROME LD34829p (CG6967-PA, isoform A). Drosophila mela... 169 3e-42 tr:Q9VCB7_DROME CG6204-PA. Drosophila melanogaster (Fruit fly). 169 5e-42 tr:Q5ZKD7_CHICK Hypothetical protein. Gallus gallus (Chicken). 167 1e-41 tr:Q9HPR8_HALN1 DNA helicase. Halobacterium sp. (strain NRC-1 / ... 167 2e-41 tr:Q8QGA6_ONCMY VHSV-induced protein (Fragment). Oncorhynchus my... 166 3e-41 tr:O01976_CAEEL Hypothetical protein C41D11.7. Caenorhabditis el... 165 5e-41 tr:Q95TZ2_DROME GH20028p. Drosophila melanogaster (Fruit fly). 165 7e-41 tr:O74465_SCHPO SPCC1739.03 protein. Schizosaccharomyces pombe (... 164 1e-40 tr:Q7XUD6_ORYSA OSJNBa0088A01.9 protein. Oryza sativa (japonica ... 163 2e-40 tr:Q23388_CAEEL Hypothetical protein ZK1067.2. Caenorhabditis el... 163 3e-40 tr:Q7QL33_ANOGA ENSANGP00000002028 (Fragment). Anopheles gambiae... 163 3e-40 tr:Q870R3_NEUCR Hypothetical protein B1D14.220. Neurospora crassa. 161 1e-39 tr:Q9CC95_MYCLE Hypothetical protein ML1098. Mycobacterium leprae. 159 3e-39 tr:Q51H49_ENTHI Regulator of nonsense transcripts 1, putative. E... 159 5e-39 tr:Q582S3_9TRYP Hypothetical protein. Trypanosoma brucei. 158 6e-39 tr:Q7XPT5_ORYSA OSJNBa0083N12.5 protein. Oryza sativa (japonica ... 158 6e-39 tr:Q8MQQ9_DROME LD17208p (Fragment). Drosophila melanogaster (Fr... 158 8e-39 tr:Q9V6W1_DROME CG6701-PA. Drosophila melanogaster (Fruit fly). 158 1e-38 tr:Q50PJ7_ENTHI Helicase, putative. Entamoeba histolytica HM-1:I... 156 3e-38 tr:Q51B12_ENTHI Regulator of nonsense transcripts, putative. Ent... 156 3e-38 tr:Q869R3_DICDI Similar to Homo sapiens (Human). Protein KIAA140... 156 3e-38 tr:Q6LRS2_PHOPR Hypothetical protein. Photobacterium profundum (... 155 6e-38 tr:Q7S547_NEUCR Hypothetical protein. Neurospora crassa. 155 8e-38 tr:Q9WZ87_THEMA Hypothetical protein. Thermotoga maritima. 154 1e-37 tr:Q7PTC1_ANOGA ENSANGP00000021787 (Fragment). Anopheles gambiae... 154 1e-37 tr:Q59E56_DROME CG11513-PB, isoform B. Drosophila melanogaster (... 150 2e-36 tr:Q6EQ49_ORYSA DNA helicase-like. Oryza sativa (japonica cultiv... 149 3e-36 tr:Q68DW5_HUMAN Hypothetical protein DKFZp781B151 (Fragment). Ho... 149 4e-36 tr:Q73WX7_MYCPA Hypothetical protein. Mycobacterium paratubercul... 149 5e-36 tr:Q6LRT1_PHOPR Hypothetical protein. Photobacterium profundum (... 146 4e-35 tr:O23408_ARATH Similar to SEN1 protein - yeast (SEN1 like prote... 143 2e-34 tr:Q8I580_PLAF7 Hypothetical protein. Plasmodium falciparum (iso... 141 8e-34 tr:Q88GN0_PSEPK DNA helicase-related protein. Pseudomonas putida... 141 9e-34 tr:Q7QGH5_ANOGA ENSANGP00000015391 (Fragment). Anopheles gambiae... 139 4e-33 tr:Q8P8Y4_XANCP DNA helicase related protein. Xanthomonas campes... 139 5e-33 tr:Q8A0B7_BACTN DNA helicase. Bacteroides thetaiotaomicron. 138 1e-32 tr:Q9VUH9_DROME CG9425-PA, isoform A. Drosophila melanogaster (F... 137 2e-32 tr:Q89ZN3_BACTN Hypothetical protein. Bacteroides thetaiotaomicron. 134 1e-31 tr:Q93NJ8_PSESY Hypothetical protein. Pseudomonas syringae (pv. ... 134 1e-31 tr:Q4ZT85_PSESY Hypothetical protein. Pseudomonas syringae pv. s... 134 1e-31 tr:Q9X1D1_THEMA Helicase-related protein. Thermotoga maritima. 134 1e-31 tr:Q64XY7_BACFR DNA helicase. Bacteroides fragilis. 133 2e-31 tr:Q64QC1_BACFR Putative DNA helicase. Bacteroides fragilis. 133 3e-31 tr:Q5JXR6_HUMAN KIAA1404 protein. Homo sapiens (Human). 133 3e-31 tr:Q7RAT3_PLAYO Hypothetical protein. Plasmodium yoelii yoelii. 132 4e-31 tr:O25195_HELPY Hypothetical protein HP0447. Helicobacter pylori... 131 8e-31 tr:Q7W753_BORPA Hypothetical protein. Bordetella parapertussis. 129 3e-30 tr:Q7WIM2_BORBR Hypothetical protein. Bordetella bronchiseptica ... 129 4e-30 tr:Q7XUD7_ORYSA OSJNBa0088A01.8 protein. Oryza sativa (japonica ... 128 7e-30 tr:Q7VYJ1_BORPE Hypothetical protein. Bordetella pertussis. 128 1e-29 tr:Q7VHE2_HELHP Hypothetical protein. Helicobacter hepaticus. 126 3e-29 tr:Q5P0E9_AZOSE Hypothetical protein. Azoarcus sp. (strain EbN1). 126 3e-29 tr:O26587_METTH DNA helicase related protein. Methanobacterium t... 123 3e-28 tr:Q9NSW3_HUMAN Hypothetical protein DKFZp434C0927. Homo sapiens... 123 3e-28 tr:Q887E7_PSESM Hypothetical protein. Pseudomonas syringae (pv. ... 123 4e-28 tr:Q95ZZ3_CAEEL Hypothetical protein C05C10.2b. Caenorhabditis e... 122 5e-28 tr:Q8KJ29_RHILO PUTATIVE HELICASE PROTEIN ATP-BINDING. Rhizobium... 121 8e-28 tr:P73197_SYNY3 Sll1582 protein. Synechocystis sp. (strain PCC 6... 121 9e-28 tr:Q626F5_CAEBR Hypothetical protein CBG01003 (Fragment). Caenor... 121 1e-27 tr:Q6L2P1_PICTO DNA helicase. Picrophilus torridus. 121 1e-27 tr:Q8PTW8_METMA Hypothetical protein MM2592. Methanosarcina maze... 121 1e-27 tr:Q8K2R9_MOUSE 4930422G04Rik protein. Mus musculus (Mouse). 120 3e-27 tr:Q5L036_GEOKA Hypothetical protein GK1415. Geobacillus kaustop... 119 3e-27 tr:Q8TKB8_METAC Hypothetical protein MA3490. Methanosarcina acet... 119 4e-27 tr:Q5NQM9_ZYMMO DNA and RNA helicase. Zymomonas mobilis. 119 4e-27 tr:Q9V2G5_PYRAB DNA replication helicase, dna2 homolog. Pyrococc... 117 2e-26 tr:Q86IV6_DICDI Hypothetical protein. Dictyostelium discoideum (... 117 2e-26 tr:Q7S356_NEUCR Hypothetical protein. Neurospora crassa. 116 5e-26 tr:O57849_PYRHO Hypothetical protein PH0109. Pyrococcus horikoshii. 115 7e-26 tr:Q7M992_WOLSU ATP-BINDING PROTEIN. Wolinella succinogenes. 110 2e-24 tr:Q8IIT6_PLAF7 Hypothetical protein. Plasmodium falciparum (iso... 109 5e-24 tr:Q601Y4_MYCHY Hypothetical protein. Mycoplasma hyopneumoniae. 108 8e-24 tr:Q7TT03_MOUSE BC006779 protein. Mus musculus (Mouse). 107 1e-23 tr:Q60J24_CAEBR Hypothetical protein CBG24721. Caenorhabditis br... 107 1e-23 tr:Q60J45_CAEBR Hypothetical protein CBG24691. Caenorhabditis br... 107 1e-23 tr:Q18633_CAEEL Hypothetical protein C44H9.4. Caenorhabditis ele... 107 2e-23 tr:Q5Z0E2_NOCFA Hypothetical protein. Nocardia farcinica. 107 2e-23 tr:Q81BI0_BACCR DNA helicase. Bacillus cereus (strain ATCC 14579... 107 2e-23 tr:Q6P455_HUMAN DNA2L protein (Fragment). Homo sapiens (Human). 106 3e-23 tr:Q81NI5_BACAN Conserved domain protein. Bacillus anthracis. 106 5e-23 tr:Q639C1_BACCZ Possible DNA helicase. Bacillus cereus (strain ZK). 105 6e-23 tr:Q21321_CAEEL Hypothetical protein K08D10.5. Caenorhabditis el... 105 6e-23 tr:Q69ZA7_MOUSE MKIAA1769 protein (Fragment). Mus musculus (Mouse). 105 7e-23 tr:Q7NC14_MYCGA UvrD. Mycoplasma gallisepticum. 105 7e-23 tr:Q735C1_BACC1 Conserved domain protein. Bacillus cereus (strai... 105 9e-23 tr:Q6HGM8_BACHK Possible DNA helicase. Bacillus thuringiensis (s... 104 1e-22 tr:Q7P614_FUSNV DNA helicase. Fusobacterium nucleatum subsp. vin... 104 2e-22 tr:Q9I0B4_PSEAE Hypothetical protein. Pseudomonas aeruginosa. 103 3e-22 tr:Q8REY5_FUSNN DNA helicase. Fusobacterium nucleatum (subsp. nu... 102 6e-22 tr:Q60NI1_CAEBR Hypothetical protein CBG22691. Caenorhabditis br... 101 1e-21 tr:Q8U4K0_PYRFU Putative DNA helicase. Pyrococcus furiosus. 101 2e-21 tr:Q7VCY3_PROMA Superfamily I DNA/RNA helicase. Prochlorococcus ... 100 3e-21 tr:Q8SQK2_ENCCU DNA REPLICATION HELICASE. Encephalitozoon cuniculi. 100 4e-21 tr:Q8IJU3_PLAF7 Hypothetical protein. Plasmodium falciparum (iso... 100 4e-21 tr:Q51L87_MAGGR Hypothetical protein. Magnaporthe grisea 70-15. 99 8e-21 tr:Q6WPL2_ECOLI Putative UvrD/REP helicase-like protein. Escheri... 98 1e-20 tr:Q6AE19_LEIXX Hypothetical protein. Leifsonia xyli (subsp. xyli). 97 2e-20 tr:Q7AFD5_ECO57 Hypothetical protein ECs1384. Escherichia coli O... 96 4e-20 tr:Q8X9M6_ECO57 , complete genome. Escherichia coli O157:H7. 96 5e-20 tr:Q8RDR3_FUSNN DNA helicase. Fusobacterium nucleatum (subsp. nu... 96 6e-20 tr:Q7RQA7_PLAYO Hypothetical protein. Plasmodium yoelii yoelii. 96 6e-20 tr:Q6CHW3_YARLI Yarrowia lipolytica chromosome A of strain CLIB9... 96 7e-20 tr:Q09594_CAEEL Hypothetical protein R03D7.2. Caenorhabditis ele... 95 1e-19 tr:Q8KC08_CHLTE DNA helicase, putative. Chlorobium tepidum. 94 2e-19 tr:Q9PPR8_UREPA Conserved hypothetical ATP/GTP-binding protein. ... 91 2e-18 tr:Q7RBE5_PLAYO Hypothetical protein. Plasmodium yoelii yoelii. 89 5e-18 tr:Q5R0V0_IDILO Superfamily I DNA/RNA helicase. Idiomarina loihi... 89 5e-18 tr:Q8GA10_ECOLI Hypothetical protein. Escherichia coli. 89 7e-18 tr:Q5ZZU6_MYCHY ABC transporter ATP binding protein. Mycoplasma ... 89 9e-18 tr:Q5YQK6_NOCFA Hypothetical protein. Nocardia farcinica. 88 1e-17 tr:Q6Q9H5_MYCHY ATP binding protein. Mycoplasma hyopneumoniae. 88 1e-17 tr:Q9PQA1_UREPA Conserved hypothetical ATP/GTP-binding protein. ... 88 1e-17 tr:Q72WK4_DESVH Hypothetical protein. Desulfovibrio vulgaris (st... 88 2e-17 tr:Q8EUS4_MYCPE Predicted ATP/GTP-binding protein. Mycoplasma pe... 86 6e-17 tr:Q9X5H6_HELPY Urease-enhancing factor helB. Helicobacter pylor... 85 1e-16 tr:Q899C1_CLOTE DNA helicase. Clostridium tetani. 85 1e-16 tr:Q97Y82_SULSO Hypothetical protein. Sulfolobus solfataricus. 84 1e-16 tr:Q83JR5_SHIFL Putative superfamily I DNA helicases (Putative s... 84 1e-16 tr:Q7QY97_GIALA GLP_387_59737_60978. Giardia lamblia ATCC 50803. 82 1e-15 tr:Q8GT59_CICAR Hypothetical protein 276 (Fragment). Cicer ariet... 82 1e-15 tr:Q7NCM9_GLOVI Glr2949 protein. Gloeobacter violaceus. 81 2e-15 tr:Q8IDY9_PLAF7 Hypothetical protein PF13_0187. Plasmodium falci... 81 2e-15 tr:Q8ZK18_SALTY Putative superfamily I DNA helicases. Salmonella... 80 3e-15 tr:Q7RPP7_PLAYO DNA replication helicase DNA2. Plasmodium yoelii... 80 3e-15 tr:Q6KHE5_MYCMO Putative ATP-binding helicase protein. Mycoplasm... 79 6e-15 tr:Q87BL9_XYLFT DNA helicase. Xylella fastidiosa (strain Temecul... 79 8e-15 tr:Q886X0_PSESM Hypothetical protein. Pseudomonas syringae (pv. ... 78 1e-14 tr:Q82CU7_STRAW Hypothetical protein. Streptomyces avermitilis. 78 1e-14 tr:Q7MS43_WOLSU Hypothetical protein. Wolinella succinogenes. 78 1e-14 tr:Q97ES1_CLOAB Superfamily I DNA helicase. Clostridium acetobut... 77 2e-14 tr:Q98R88_MYCPU ATP-BINDING PROTEIN. Mycoplasma pulmonis. 76 4e-14 tr:Q7V8N5_PROMM Hypothetical protein (EC 2.7.7.-). Prochlorococc... 76 4e-14 tr:Q7S8B9_NEUCR Hypothetical protein. Neurospora crassa. 76 5e-14 tr:Q5JLH1_ORYSA Helicase-like protein. Oryza sativa (japonica cu... 76 7e-14 tr:P94840_HELPY Cag-omega. Helicobacter pylori (Campylobacter py... 76 8e-14 tr:Q54P97_DICDI Hypothetical protein. Dictyostelium discoideum (... 75 1e-13 tr:Q5NPP1_ZYMMO Hypothetical protein. Zymomonas mobilis. 74 2e-13 tr:Q75X95_HELPY Cag pathogenicity island protein. Helicobacter p... 74 2e-13 tr:Q7QVD2_GIALA GLP_542_32520_28105. Giardia lamblia ATCC 50803. 73 4e-13 tr:Q5E034_VIBF1 Superfamily I DNA helicases and helicase subunit... 73 5e-13 tr:Q7RBF5_PLAYO Hypothetical protein (Fragment). Plasmodium yoel... 73 5e-13 tr:Q88Y71_LACPL Hypothetical protein lp_0918. Lactobacillus plan... 71 1e-12 tr:Q6Q1S3_9CORO Replicase polyprotein 1ab. Human coronavirus NL63. 71 1e-12 tr:Q6R1L9_9CORO ORF 1ab. Human group 1 coronavirus associated wi... 71 1e-12 tr:Q6TNG2_CVHOC Replicase polyprotein. Human coronavirus (strain... 71 2e-12 tr:Q696Q1_CVHOC Orf1ab. Human coronavirus (strain OC43) (HCoV-OC... 71 2e-12 tr:Q52PA4_9CORO Polyprotein ab. Feline infectious peritonitis vi... 71 2e-12 tr:Q6MSV9_MYCMS Hypothetical protein. Mycoplasma mycoides (subsp... 70 3e-12 tr:Q66WN6_9CORO Replicative polyprotein 1ab. Murine hepatitis vi... 69 5e-12 tr:Q5MQD2_9CORO Orf1ab polyprotein. Human coronavirus HKU1. 69 5e-12 tr:Q8CJY4_STRCO Hypothetical protein SCO2810. Streptomyces coeli... 69 7e-12 tr:Q9J3E8_9CORO RNA-directed RNA polymerase. Murine hepatitis vi... 69 9e-12 tr:Q5B461_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. 68 2e-11 tr:Q77NN3_9CORO RNA-directed RNA polymerase. Murine hepatitis vi... 68 2e-11 tr:Q9YMB7_9CORO Hypothetical protein. Transmissible gastroenteri... 68 2e-11 tr:Q9J3F2_9CORO RNA-directed RNA polymerase. Murine hepatitis vi... 68 2e-11 tr:Q7RHH6_PLAYO Sen1p. Plasmodium yoelii yoelii. 66 5e-11 tr:Q6LUB5_PHOPR Hypothetical protein SA0089. Photobacterium prof... 66 7e-11 tr:Q6VMD6_9CORO 1ab polyprotein. Avian infectious bronchitis virus. 64 2e-10 tr:Q6DTV4_9CORO Replicase polyprotein 1ab. Avian infectious bron... 64 3e-10 tr:Q553Q0_DICDI Hypothetical protein. Dictyostelium discoideum (... 64 3e-10 tr:Q5I5Y0_9CORO 1b. Avian infectious bronchitis virus. 63 4e-10 tr:Q7P6Q0_FUSNV Superfamily I DNA helicase. Fusobacterium nuclea... 63 4e-10 tr:Q7VJC2_HELHP Hypothetical protein. Helicobacter hepaticus. 63 4e-10 tr:Q6R4P7_9CORO 1ab. Avian infectious bronchitis virus. 63 4e-10 tr:Q7R6G3_GIALA GLP_170_208849_213144. Giardia lamblia ATCC 50803. 62 9e-10 tr:Q6DV55_9CORO Replicase polyprotein 1ab. Avian infectious bron... 62 1e-09 tr:Q7S3A3_NEUCR Hypothetical protein. Neurospora crassa. 61 2e-09 tr:Q5MNZ3_9CORO Polyprotein 1b. Avian infectious bronchitis virus. 60 4e-09 tr:Q4ZJT3_9CORO Polyprotein 1b. Avian infectious bronchitis virus. 60 4e-09 tr:Q4ZJT1_9CORO Polyprotein 1b. Avian infectious bronchitis virus. 60 4e-09 tr:Q64958_9CORO Potential chimeric protein. Avian infectious bro... 59 5e-09 tr:Q7T835_9CORO Replicase polyprotein 1ab. Avian infectious bron... 59 5e-09 tr:Q52KK8_BRARE Hypothetical protein. Brachydanio rerio (Zebrafi... 59 6e-09 tr:Q5GZ23_XANOR Hypothetical protein. Xanthomonas oryzae (pv. or... 59 6e-09 tr:Q9AL64_SHIFL Hypothetical protein. Shigella flexneri 2a. 59 7e-09 tr:Q9X5H7_HELPY HelA. Helicobacter pylori (Campylobacter pylori). 58 2e-08 tr:Q8P644_XANCP DNA helicase related protein. Xanthomonas campes... 58 2e-08 tr:Q7MZ50_PHOLL Similarities with DNA helicase related protein. ... 58 2e-08 tr:Q6XN63_RHOER Hypothetical protein. Rhodococcus erythropolis. 58 2e-08 tr:Q4ZPA8_PSESY DNA helicase related protein. Pseudomonas syring... 58 2e-08 tr:Q5TR30_ANOGA ENSANGP00000028467. Anopheles gambiae str. PEST. 57 2e-08 tr:O51577_BORBU Exodeoxyribonuclease V, alpha chain (RecD). Borr... 57 3e-08 tr:O54378_9LACT Exonuclease RexA. Lactococcus lactis. 56 4e-08 tr:Q5DIC7_CVHSA Orf1ab polyprotein. SARS coronavirus WH20. 56 8e-08 tr:Q5Y189_CVHSA Nonstructural polyprotein pp1ab. SARS Coronaviru... 56 8e-08 tr:Q6JH40_CVHSA Orf1ab polyprotein. SARS coronavirus Sino3-11. 56 8e-08 tr:Q6JH48_CVHSA Orf1ab polyprotein. SARS coronavirus Sino1-11. 56 8e-08 tr:Q6UZF1_CVHSA Putative orf1ab polyprotein. SARS coronavirus PU... 56 8e-08 tr:Q6UZF5_CVHSA Putative orf1ab polyprotein. SARS coronavirus PU... 56 8e-08 tr:Q6V586_CVHSA Putative orf1ab polyprotein. SARS coronavirus PU... 56 8e-08 tr:Q6RCW7_CVHSA Putative polyprotein. SARS coronavirus TW9. 56 8e-08 tr:Q6RCX8_CVHSA Putative polyprotein. SARS coronavirus TW8. 56 8e-08 tr:Q6RCY9_CVHSA Putative polyprotein. SARS coronavirus TW7. 56 8e-08 tr:Q6RD00_CVHSA Putative polyprotein. SARS coronavirus TW6. 56 8e-08 tr:Q6RD11_CVHSA Putative polyprotein. SARS coronavirus TW5. 56 8e-08 tr:Q6RD22_CVHSA Putative polyprotein. SARS coronavirus TW4. 56 8e-08 tr:Q6RD33_CVHSA Putative polyprotein. SARS coronavirus TW3. 56 8e-08 tr:Q6RD44_CVHSA Putative polyprotein. SARS coronavirus TW2. 56 8e-08 tr:Q6RD55_CVHSA Putative polyprotein. SARS coronavirus TW11. 56 8e-08 tr:Q6RD66_CVHSA Putative polyprotein. SARS coronavirus TW10. 56 8e-08 tr:Q6VA80_CVHSA Putative orf1ab polyprotein. SARS coronavirus CU... 56 8e-08 tr:Q6VA91_CVHSA Putative orf1ab polyprotein. SARS coronavirus CU... 56 8e-08 tr:Q6VAA2_CVHSA Putative orf1ab polyprotein. SARS coronavirus CU... 56 8e-08 tr:Q692E6_CVHSA Replicase 1ab. SARS coronavirus TJF. 55 1e-07 tr:Q6R7Y8_CVHSA Nonstructural polyprotein. SARS coronavirus NS-1. 55 1e-07 tr:Q6S8D8_CVHSA Orf1ab. SARS coronavirus ShanghaiQXC2. 55 1e-07 tr:Q6TPE9_CVHSA Nonstructural polyprotein. SARS coronavirus GZ02. 55 1e-07 tr:Q8PA55_XANCP Hypothetical protein XCC1635. Xanthomonas campes... 54 2e-07 tr:Q660N9_BORGA Exodeoxyribonuclease V, alpha chain. Borrelia ga... 54 2e-07 tr:Q9PAT6_XYLFA Hypothetical protein. Xylella fastidiosa. 54 3e-07 tr:Q5F8K1_NEIG1 Putative exodeoxyribonuclease V alpha subunit. N... 54 3e-07 tr:O68924_NEIGO RecD. Neisseria gonorrhoeae. 54 3e-07 tr:Q9JUB8_NEIMA Exodeoxyribonuclease V alpha subunit. Neisseria ... 53 4e-07 tr:Q9JZ93_NEIMB Exodeoxyribonuclease V, alpha subunit. Neisseria... 53 4e-07 tr:Q9CJI9_LACLA Subunit A of ATP-dependent exonuclease. Lactococ... 53 4e-07 tr:Q6LR75_PHOPR Hypothetical protein. Photobacterium profundum (... 52 8e-07 tr:Q6GKK5_STAAR Hypothetical protein. Staphylococcus aureus (str... 52 8e-07 tr:Q7V0Z2_PROMP Possible exodeoxyribonuclease V 67 kD polypeptid... 52 8e-07 tr:Q7QWV7_GIALA GLP_203_41128_41724. Giardia lamblia ATCC 50803. 51 2e-06 tr:Q9KF38_BACHD ATP-dependent DNA helicase. Bacillus halodurans. 51 2e-06 tr:Q5JLE9_ORYSA TRNA-splicing endonuclease positive effector-lik... 51 2e-06 tr:Q9CNB5_PASMU RecD. Pasteurella multocida. 48 1e-05 tr:Q98PE1_MYCPU EXODEOXYRIBONUCLEASE V ALPHA CHAIN (EC 3.1.11.5)... 48 1e-05 tr:Q89MC7_BRAJA Bll4266 protein. Bradyrhizobium japonicum. 48 2e-05 tr:Q600N7_MYCHY ATP-dependent DNA helicase. Mycoplasma hyopneumo... 48 2e-05 tr:Q51AY1_ENTHI Hypothetical protein. Entamoeba histolytica HM-1... 48 2e-05 tr:Q51AX8_ENTHI Hypothetical protein. Entamoeba histolytica HM-1... 48 2e-05 tr:Q6SRA8_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-PH2. 48 2e-05 tr:Q6SRA9_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-PH1. 48 2e-05 tr:Q6SRB0_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-YM4. 48 2e-05 tr:Q6SRB1_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-YM3. 48 2e-05 tr:Q6SRB2_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-YM2. 48 2e-05 tr:Q6SRB3_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-YM1. 48 2e-05 tr:Q6SRB4_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-GD5. 48 2e-05 tr:Q6SRB5_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-GD4. 48 2e-05 tr:Q6SRB6_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-GD3. 48 2e-05 tr:Q6SRB7_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-GD2. 48 2e-05 tr:Q6SRB8_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-GD1. 48 2e-05 tr:Q6SRB9_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-KC3. 48 2e-05 tr:Q6SRC0_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-KC1. 48 2e-05 tr:Q6SRC1_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-JC2. 48 2e-05 tr:Q6SRC2_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-HP4. 48 2e-05 tr:Q6SRC3_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-HP3. 48 2e-05 tr:Q6SRC4_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-HP2. 48 2e-05 tr:Q6SRC5_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-HP1. 48 2e-05 tr:Q6N7J7_RHOPA Possible Viral (Superfamily 1) RNA helicase. Rho... 47 2e-05 tr:Q6Y9B1_BORHE Exodeoxyribonuclease V alpha chain. Borrelia her... 47 2e-05 tr:Q5NVY5_9ARCH ATP-dependent DNA helicase (EC 3.6.1.-). uncultu... 47 3e-05 tr:Q7A890_STAAN SA0089 protein. Staphylococcus aureus (strain N3... 47 3e-05 tr:Q99XB9_STAAM Hypothetical protein. Staphylococcus aureus (str... 47 3e-05 tr:Q5HJS6_STAAC Hypothetical protein. Staphylococcus aureus (str... 47 3e-05 tr:Q6GD29_STAAS Hypothetical protein. Staphylococcus aureus (str... 47 3e-05 tr:Q8NYU5_STAAW MW0068 protein. Staphylococcus aureus (strain MW2). 47 3e-05 tr:Q6MIL6_BDEBA Probable exonuclease RexA. Bdellovibrio bacterio... 47 3e-05 tr:Q8ES83_OCEIH ATP-dependent DNA helicase (EC 3.6.1.-). Oceanob... 46 5e-05 tr:Q6AGE7_LEIXX Hypothetical protein. Leifsonia xyli (subsp. xyli). 46 5e-05 tr:Q7VRF0_CANBF Exonuclease V, alpha chain (EC 3.1.11.5). Candid... 46 6e-05 tr:Q8RCE3_THETN ATP-dependent exoDNAse (Exonuclease V), alpha su... 46 6e-05 tr:Q64UX0_BACFR Hypothetical protein. Bacteroides fragilis. 46 7e-05 tr:Q9EUN8_CORGL Transfer protein homolog TraA. Corynebacterium g... 46 7e-05 tr:Q6NIP2_CORDI Putative DNA helicase II (EC 3.6.1.-). Corynebac... 46 7e-05 tr:Q6AJ72_DESPS Probable ATP-dependent DNA helicase, UvrD/REP fa... 46 8e-05 tr:Q6F0P9_MESFL Repair endonuclease ATP-dependent DNA helicase. ... 46 8e-05 tr:Q5NF54_FRATT Exodeoxyribonuclease V, alpha subunit (EC 3.1.11... 46 8e-05 tr:Q5WF16_BACSK ATP-dependent DNA helicase, UvrD/REP family. Bac... 46 9e-05 tr:Q7U879_SYNPX Conserved hypothetical (EC 3.1.11.5). Synechococ... 45 1e-04 tr:Q6BV52_DEBHA Similar to tr|Q8CFQ3 Mus musculus and wi|NCU0786... 45 1e-04 tr:Q8V0G6_9NIDO ORF1b polyprotein (Fragment). Yellow head virus. 44 2e-04 tr:Q9WPZ7_9NIDO ORF1ab replicase polyprotein (Fragment). Gill-as... 44 2e-04 tr:Q84GD9_CORGL TraA. Corynebacterium glutamicum (Brevibacterium... 44 2e-04 tr:Q8VVJ4_CORGL TraA protein. Corynebacterium glutamicum (Brevib... 44 2e-04 tr:Q8FRG7_COREF Putative ATP-dependent DNA helicase. Corynebacte... 44 2e-04 tr:Q8RMJ7_CORDI TraA. Corynebacterium diphtheriae. 44 3e-04 tr:Q6FAS6_ACIAD Putative helicase. Acinetobacter sp. (strain ADP1). 44 3e-04 tr:Q82SY0_NITEU UvrD/REP helicase. Nitrosomonas europaea. 44 3e-04 tr:Q67KK1_SYMTH Exodeoxyribonuclease-like protein. Symbiobacteri... 44 3e-04 tr:Q73UR9_MYCPA UvrD2. Mycobacterium paratuberculosis. 44 3e-04 tr:Q7VRE9_CANBF Exonuclease V, beta chain (EC 3.1.11.5). Candida... 44 3e-04 tr:Q49204_MYCGE Hypothetical protein (Fragment). Mycoplasma geni... 43 4e-04 tr:Q5X053_LEGPL Hypothetical protein. Legionella pneumophila (st... 43 4e-04 tr:Q67L69_SYMTH DNA helicase-like protein. Symbiobacterium therm... 43 4e-04 tr:Q5YWP7_NOCFA Putative RecD protein. Nocardia farcinica. 43 4e-04 tr:Q8TND2_METAC ATP-dependent DNA helicase. Methanosarcina aceti... 43 4e-04 tr:Q5X8R4_LEGPA Hypothetical protein. Legionella pneumophila (st... 43 5e-04 tr:Q9HIE2_THEAC Hypothetical protein Ta1398. Thermoplasma acidop... 43 5e-04 tr:Q86924_9VIRU Polyprotein 1. Aura virus. 43 5e-04 tr:Q8FLG9_COREF Putative conjugal transfer protein traA. Coryneb... 42 6e-04 tr:Q8NS28_CORGL Superfamily I DNA and RNA helicases (EC 3.6.1.-)... 42 6e-04 tr:Q5WHN2_BACSK ATP-dependent exoDNAse alpha subunit. Bacillus c... 42 6e-04 tr:Q7P1K8_CHRVO DNA helicase II (EC 3.6.1.-). Chromobacterium vi... 42 7e-04 tr:Q8QL53_9VIRU Non-structural polyprotein. Sleeping disease virus. 42 7e-04 tr:Q5L066_GEOKA Hypothetical protein GK1385. Geobacillus kaustop... 42 8e-04 tr:Q6A849_PROAC Exonuclease V, alpha chain (EC 3.1.11.5). Propio... 42 8e-04 tr:Q92ZI0_RHIME Probable TraA1 conjugal transfer protein. Rhizob... 42 8e-04 tr:Q7VBJ9_PROMA ATP-dependent exoDNAse alpha subunit. Prochloroc... 42 8e-04 tr:Q5XXP4_9VIRU Nonstructural polyprotein. Chikungunya virus. 42 8e-04 tr:Q8JUX6_9VIRU Nonstructural polyprotein. Chikungunya virus. 42 8e-04 tr:Q5HN29_STAEQ ATP-dependent DNA helicase PcrA (EC 3.6.1.-). St... 42 8e-04 tr:Q7V6R1_PROMM Similar to UvrD/REP helicase. Prochlorococcus ma... 42 0.001 tr:Q92VN3_RHIME Putative conjugal transfer protein. Rhizobium me... 42 0.001 tr:Q7D3W2_AGRT5 AGR_pAT_164p. Agrobacterium tumefaciens (strain ... 41 0.001 tr:Q8F7H9_LEPIN Exodeoxyribonuclease V, beta chain (EC 3.1.11.5)... 41 0.001 tr:Q8UKJ1_AGRT5 Conjugal transfer protein. Agrobacterium tumefac... 41 0.001 tr:Q72NZ1_LEPIC Exodeoxyribonuclease V beta chain. Leptospira in... 41 0.001 tr:Q7U7R4_SYNPX Probable exodeoxyribonuclease V, beta subunit Re... 41 0.001 tr:Q93UY4_9RHIZ TraA protein. Agrobacterium tumefaciens. 41 0.001 tr:Q62S80_BACLD Putative exodeoxyribonuclease V alpha subunit Yr... 41 0.001 tr:Q65GS1_BACLD YrrC. Bacillus licheniformis (strain DSM 13 / AT... 41 0.002 tr:Q5NQ07_ZYMMO DNA and RNA helicase. Zymomonas mobilis. 41 0.002 tr:Q809B7_SFV Non-structural polyprotein. Semliki forest virus (... 41 0.002 tr:O73550_SFV Polyprotein (Fragment). Semliki forest virus (SFV). 41 0.002 tr:Q9QBM1_SFV Polyprotein nsP1234. Semliki forest virus (SFV). 41 0.002 tr:Q53AM5_9VIRU Non-structural polyprotein (Fragment). Salmon pa... 41 0.002 tr:Q53AM7_9VIRU Non-structural polyprotein (Fragment). Salmon pa... 41 0.002 tr:Q53AM8_9VIRU Non-structural polyprotein (Fragment). Salmon pa... 41 0.002 tr:Q53AN1_9VIRU Non-structural polyprotein (Fragment). Salmon pa... 41 0.002 tr:Q8QQZ3_SINDV Nonstructural polyprotein 1234 (Fragment). Sindb... 41 0.002 tr:Q8QQZ4_SINDV Nonstructural polyprotein 123. Sindbis virus. 41 0.002 tr:Q8QTI6_SINDV Nonstructural polyprotein. Sindbis virus. 41 0.002 tr:Q8QTI7_SINDV Nonstructural protein. Sindbis virus. 41 0.002 tr:Q8KIN6_RHIET Conjugation transfer protein (Putative relaxase)... 41 0.002 tr:O84614_CHLTR DNA Helicase. Chlamydia trachomatis. 41 0.002 tr:Q8NSA0_CORGL Superfamily I DNA and RNA helicases (EC 3.6.1.-)... 41 0.002 tr:Q9PPY9_UREPA DNA helicase II. Ureaplasma parvum (Ureaplasma u... 41 0.002 tr:Q5FZN4_9VIRU Helicase (Fragment). Avian hepatitis E virus. 41 0.002 tr:Q5FZN5_9VIRU Helicase (Fragment). Avian hepatitis E virus. 41 0.002 tr:Q5FZN6_9VIRU Helicase (Fragment). Avian hepatitis E virus. 41 0.002 tr:Q5FZN7_9VIRU Helicase (Fragment). Avian hepatitis E virus. 41 0.002 tr:Q5Y5S9_9VIRU Helicase (Fragment). Avian hepatitis E virus. 41 0.002 tr:Q6QLN1_9VIRU Non-structural polyprotein. Avian hepatitis E vi... 41 0.002 tr:Q5HEL7_STAAC ATP-dependent DNA helicase PcrA (EC 3.6.1.-). St... 41 0.002 tr:Q68W15_RICTY ATP-dependent helicase/nuclease. Rickettsia typhi. 41 0.002 tr:Q8PFN7_XANAC DNA helicase. Xanthomonas axonopodis (pv. citri). 41 0.002 tr:Q9F5E0_AGRRH Riorf112 protein. Agrobacterium rhizogenes. 41 0.002 tr:Q5A9E3_CANAL Hypothetical protein. Candida albicans SC5314. 41 0.002 tr:Q8GM52_ZYMMO Helicase II. Zymomonas mobilis. 41 0.003 tr:Q6XYV7_SPIKU ATP-dependent DNA helicase. Spiroplasma kunkelii. 41 0.003 tr:Q938A0_MYCAV Putative relaxase. Mycobacterium avium. 41 0.003 tr:Q6NHI1_CORDI Putative helicase. Corynebacterium diphtheriae. 41 0.003 tr:Q8XIE6_CLOPE Exodeoxyribonuclease V alpha subunit. Clostridiu... 40 0.003 tr:Q89BR0_BRAJA Blr8088 protein. Bradyrhizobium japonicum. 40 0.003 tr:Q5A9P1_CANAL Hypothetical protein. Candida albicans SC5314. 40 0.003 tr:Q8QHM4_9VIRU Nonstructural polyprotein nsP1-nsP2-nsP3. Mayaro... 40 0.003 tr:Q8QZ73_9VIRU Nonstructural polyprotein nsP1-nsP2-nsP3-nsP4. M... 40 0.003 tr:Q8JJX1_9VIRU Non-structural polyprotein. Salmon pancreas dise... 40 0.003 tr:Q88431_SINDV Nonstructural polyprotein. Sindbis-like virus. 40 0.003 tr:Q18630_CAEEL Hypothetical protein C44H9.2. Caenorhabditis ele... 40 0.003 tr:Q830V6_ENTFA Helicase, putative, RecD/TraA family. Enterococc... 40 0.004 tr:Q7VGG3_HELHP DNA helicase II. Helicobacter hepaticus. 40 0.004 tr:Q5LY80_STRT1 ATP-dependent exonuclease, subunit A. Streptococ... 40 0.004 tr:Q4ZL80_PSESY UvrD/REP helicase. Pseudomonas syringae pv. syri... 40 0.004 tr:Q5M2T7_STRT2 ATP-dependent exonuclease, subunit A. Streptococ... 40 0.004 tr:Q7VBG7_PROMA DNA helicase related to phage enzyme. Prochloroc... 40 0.004 tr:Q8NQQ3_CORGL Hypothetical protein Cgl1373. Corynebacterium gl... 40 0.004 tr:Q84HT7_RHIET Probable conjugal transfer protein TraA. Rhizobi... 40 0.004 tr:Q6M5I5_CORGL Superfamily I DNA or RNA helicase. Corynebacteri... 40 0.004 tr:Q92GJ9_RICCN Hypothetical protein. Rickettsia conorii. 40 0.004 tr:Q7P9M6_RICSI ATP-dependent helicase. Rickettsia sibirica. 40 0.005 tr:O26077_HELPY Helicase. Helicobacter pylori (Campylobacter pyl... 40 0.005 tr:Q9AL65_SHIFL Hypothetical protein. Shigella flexneri 2a. 39 0.005 tr:Q6CUM9_KLULA Kluyveromyces lactis strain NRRL Y-1140 chromoso... 39 0.005 tr:Q9YRB3_9VIRU RNA-dependent RNA polymerase. Nudaurelia capensi... 39 0.005 tr:Q6MSK3_MYCMS ATP-dependent DNA helicase (EC 3.6.1.-). Mycopla... 39 0.005 tr:Q7U7R3_SYNPX Probable exodeoxyribonuclease V, alpha subunit R... 39 0.005 tr:Q8FR36_COREF Putative ATP-dependent DNA helicase. Corynebacte... 39 0.005 tr:Q5XZF4_EEEV Nonstructural protein. Eastern equine encephaliti... 39 0.006 tr:Q66580_EEEV Eastern Equine Encephalomyelitis Virus RNA sequen... 39 0.006 tr:Q92GJ7_RICCN Hypothetical protein. Rickettsia conorii. 39 0.006 tr:Q88789_EEEV Nonstructural polyprotein. Eastern equine encepha... 39 0.006 tr:Q8FTQ9_COREF Hypothetical protein. Corynebacterium efficiens. 39 0.006 tr:Q7V6P2_PROMM Conserved hypothetical (EC 3.1.11.5). Prochloroc... 39 0.007 tr:P87515_BFV Nonstructural polyprotein. Barmah forest virus. 39 0.007 tr:O34481_BACSU YrrC protein. Bacillus subtilis. 39 0.007 tr:Q5QUQ9_IDILO ATP-dependent exoDNAse (Exonuclease V), alpha su... 39 0.007 tr:Q984L8_RHILO ATP-dependent DNA helicase. Rhizobium loti (Meso... 39 0.007 tr:Q92GK9_RICCN ATP-dependent helicase. Rickettsia conorii. 39 0.007 tr:Q8X013_NEUCR Hypothetical protein B23D6.110. Neurospora crassa. 39 0.007 tr:Q5UQ92_MIMIV Putative DNA helicase. Mimivirus. 39 0.008 tr:Q54FC2_DICDI Hypothetical protein. Dictyostelium discoideum (... 39 0.008 tr:Q5Y5T0_9VIRU Helicase (Fragment). Avian hepatitis E virus. 39 0.008 tr:Q82IR1_STRAW Putative ATP-dependent DNA helicase. Streptomyce... 39 0.008 tr:Q9WJF1_SINDV Nonstructural protein. Sindbis-like virus YN87448. 39 0.008 tr:Q9YJX6_SINDV P270 nonstructural polyprotein. Sindbis-like vir... 39 0.008 tr:Q8A9U4_BACTN DNA repair and recombination protein, putative h... 39 0.008 tr:O90368_9VIRU Nonstructural polyprotein. O'nyong-nyong virus. 39 0.008 tr:O90370_9VIRU Nonstructural polyprotein. Igbo Ora virus. 39 0.008 tr:Q65TK4_MANSM RecB protein. Mannheimia succiniciproducens (str... 39 0.009 tr:Q733Z1_BACC1 Hypothetical protein. Bacillus cereus (strain AT... 39 0.010 tr:Q6T1E7_CVHSA Orf1ab polyprotein (Fragment). SARS coronavirus ... 39 0.010 tr:Q7UIR9_RHOBA ATP-dependent DNA helicase (EC 3.6.1.-). Rhodopi... 39 0.010 tr:Q6M4L4_CORGL Superfamily I DNA or RNA helicase. Corynebacteri... 39 0.010 tr:Q8FLJ3_COREF Putative conjugal transfer protein traA. Coryneb... 39 0.010 tr:Q64UA2_BACFR Putative helicase. Bacteroides fragilis. 39 0.010 tr:Q9X0W5_THEMA ATP-dependent DNA helicase. Thermotoga maritima. 39 0.010 tr:Q9PJD1_CHLMU ATP-dependent helicase PcrA. Chlamydia muridarum. 38 0.012 tr:Q6LB50_OLICA TraA. Oligotropha carboxidovorans (Pseudomonas c... 38 0.013 tr:Q87U01_PSESM DNA helicase II. Pseudomonas syringae (pv. tomato). 38 0.014 tr:Q9RPH5_MYCSM RecD. Mycobacterium smegmatis. 38 0.014 tr:Q6MND7_BDEBA ATP-dependent DNA helicase (EC 3.6.1.-). Bdellov... 38 0.014 tr:Q9RT63_DEIRA Exodeoxyribonuclease V, subunit RecD, putative. ... 38 0.014 tr:Q676H0_9RHIZ Probable conjugal transfer protein TraA. Agrobac... 38 0.014 tr:Q5HNT1_STAEQ Helicase, putative, RecD/TraA family. Staphyloco... 38 0.015 tr:Q8CP04_STAEP Deoxyribonuclease. Staphylococcus epidermidis. 38 0.015 tr:Q6MDD6_PARUW Putative exodeoxyribonuclease V. Parachlamydia s... 38 0.016 tr:Q8NPP6_CORGL Superfamily I DNA and RNA helicases (EC 3.6.1.-)... 38 0.016 tr:Q9ZJ69_HELPJ Putative ATP-DEPENDENT HELICASE. Helicobacter py... 38 0.016 tr:Q87644_SINDV P270 nonstructural polyprotein. Sindbis virus. 38 0.017 tr:Q5ZW46_LEGPH Conjugal transfer protein TraA. Legionella pneum... 38 0.017 tr:Q87B09_XYLFT Exodeoxyribonuclease V alpha chain. Xylella fast... 38 0.017 tr:Q9PG77_XYLFA Exodeoxyribonuclease V alpha chain. Xylella fast... 38 0.017 tr:Q5NF53_FRATT Exodeoxyribonuclease V beta chain (EC 3.1.11.5).... 38 0.017 tr:Q7V0Z1_PROMP Possible UvrD/REP helicase subunit B (EC 3.1.11.... 38 0.017 tr:Q60AW1_METCA Conserved domain protein. Methylococcus capsulatus. 38 0.018 tr:Q8JMP6_SFV Non-structural polyprotein. Semliki forest virus (... 37 0.019 tr:Q66CE5_YERPS Putative DNA helicase IV (EC 3.6.1.-). Yersinia ... 37 0.019 tr:Q5Y389_9VIRU NsP1234 polyprotein. Getah virus. 37 0.019 tr:Q9JGL0_9VIRU Polyprotein. Sagiyama virus. 37 0.019 tr:Q9JGK9_9VIRU Polyprotein. Sagiyama virus. 37 0.019 tr:Q6ZE92_SYNY3 Exodeoxyribonuclease V alpha chain. Synechocysti... 37 0.019 tr:Q8D058_YERPE DNA helicase IV. Yersinia pestis. 37 0.020 tr:Q7M9J2_WOLSU ATP-DEPENDENT DNA HELICASE EC 3.6.1. (EC 3.6.1.-... 37 0.020 tr:Q6A852_PROAC Putative DNA helicase II homolog (EC 3.6.1.-). P... 37 0.021 tr:Q99QQ1_SHIFL ORF182 (Orf, hypothetical). Shigella flexneri. 37 0.021 tr:Q73SI2_MYCPA RecD. Mycobacterium paratuberculosis. 37 0.021 tr:Q8VSB7_SHIFL Hypothetical protein. Shigella flexneri. 37 0.021 tr:Q67K47_SYMTH Putative ATP-dependent DNA helicase. Symbiobacte... 37 0.022 tr:Q5FT38_GLUOX Bacteriophage-type DNA helicase. Gluconobacter o... 37 0.023 tr:Q9PH94_XYLFA DNA helicase II. Xylella fastidiosa. 37 0.024 tr:Q7P628_FUSNV DNA helicase II (EC 3.6.1.-). Fusobacterium nucl... 37 0.024 tr:Q5SJL0_THET8 ATP-dependent DNA helicase. Thermus thermophilus... 37 0.024 tr:Q930Q8_RHIME Probable methylamine. Rhizobium meliloti (Sinorh... 37 0.025 tr:Q72JY0_THET2 Probable ATP-dependent DNA helicase. Thermus the... 37 0.025 tr:Q74F46_GEOSL Helicase, putative. Geobacter sulfurreducens. 37 0.028 tr:Q6AFN0_LEIXX ATP-dependent DNA helicase II. Leifsonia xyli (s... 37 0.028 tr:Q6LR56_PHOPR Putative ATP-dependent exoDNAse (Exonuclease V),... 37 0.028 tr:Q92BK4_LISIN Lin1544 protein. Listeria innocua. 37 0.029 tr:Q74I48_LACJO ATP-dependent DNA helicase PcrA. Lactobacillus j... 37 0.032 tr:Q6NIE2_CORDI ATP-dependent DNA helicase (EC 3.6.1.-). Coryneb... 37 0.033 tr:Q5HXH6_GLUOX Conjugal transfer protein, TraA. Gluconobacter o... 37 0.033 tr:Q8ZG72_YERPE Putative helicase IV (EC 3.6.1.-). Yersinia pestis. 37 0.033 tr:Q88429_SINDV Nonstructural polyprotein. Sindbis-like virus. 37 0.034 tr:Q6Y9B2_BORHE Exodeoxynuclease V beta chain (Exodeoxyribonucle... 37 0.034 tr:Q7MTC3_PORGI Helicase, putative. Porphyromonas gingivalis (Ba... 37 0.034 tr:Q9ZCJ7_RICPR ATP-DEPENDENT NUCLEASE SUBUNIT A (AddA). Rickett... 37 0.035 tr:Q7CXZ3_AGRT5 AGR_C_3725p. Agrobacterium tumefaciens (strain C... 37 0.036 tr:Q8UDR4_AGRT5 DNA helicase II. Agrobacterium tumefaciens (stra... 37 0.036 tr:Q6N434_RHOPA DNA helicase II (EC 3.6.1.-). Rhodopseudomonas p... 37 0.037 tr:Q55FJ4_DICDI Hypothetical protein. Dictyostelium discoideum (... 37 0.037 tr:Q83GZ1_TROWT Phosphoribosylaminoimidazolecarboxamide formyltr... 37 0.039 tr:Q83ID0_TROW8 Bifunctional purine biosynthesis protein PurH (E... 37 0.039 tr:Q6FZ97_BARQU Hypothetical protein. Bartonella quintana (Rocha... 37 0.040 tr:Q9DJR1_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 36 0.041 tr:Q5F609_NEIG1 Putative DNA helicase II. Neisseria gonorrhoeae ... 36 0.045 tr:Q8G3N4_BIFLO Possible helicase. Bifidobacterium longum. 36 0.045 tr:Q9ALM0_9PSEU Probable exodeoxyribonuclease V. Saccharopolyspo... 36 0.046 tr:Q87F91_XYLFT DNA helicase II. Xylella fastidiosa (strain Teme... 36 0.046 tr:Q6MFB5_PARUW Putative exodeoxyribonuclease V alpha chain recD... 36 0.046 tr:Q8NG08_HUMAN Helicase B. Homo sapiens (Human). 36 0.046 tr:Q898W6_CLOTE Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)... 36 0.046 tr:Q6D8H8_ERWCT Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)... 36 0.046 tr:Q6AD55_LEIXX ATP-dependent DNA helicase II. Leifsonia xyli (s... 36 0.047 tr:Q9FCK0_STRCO Putative ATP-dependent DNA helicase. Streptomyce... 36 0.049 tr:Q75A11_ASHGO ADR113Wp. Ashbya gossypii (Yeast) (Eremothecium ... 36 0.050 tr:Q9A2L9_CAUCR Helicase, UvrD/Rep family. Caulobacter crescentus. 36 0.051 tr:Q92K51_RHIME Hypothetical protein SMc01414. Rhizobium melilot... 36 0.051 tr:Q9RTI9_DEIRA DNA helicase II. Deinococcus radiodurans. 36 0.051 tr:Q667G8_YERPS Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)... 36 0.063 tr:Q8ZH87_YERPE Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)... 36 0.063 tr:Q9PL06_CHLMU Exodeoxyribonuclease V, alpha subunit. Chlamydia... 36 0.064 tr:Q87GP9_VIBPA Putative ATP-dependent exoDNAse (Exonuclease V),... 36 0.064 tr:Q9A836_CAUCR DNA helicase II. Caulobacter crescentus. 36 0.064 tr:Q8P380_XANCP Exodeoxyribonuclease V alpha chain. Xanthomonas ... 36 0.065 tr:Q98B51_RHILO Conjugal transfer protein; TraA. Rhizobium loti ... 36 0.066 tr:Q5M2P0_STRT2 Exodeoxyribonuclease V. Streptococcus thermophil... 36 0.066 tr:Q9K1D0_NEIMB DNA helicase II. Neisseria meningitidis (serogro... 36 0.068 tr:Q5LY35_STRT1 Exodeoxyribonuclease V. Streptococcus thermophil... 36 0.069 tr:Q5WVN9_LEGPL Hypothetical protein. Legionella pneumophila (st... 36 0.070 tr:Q7UPR6_RHOBA ATP-dependent DNA helicase. Rhodopirellula baltica. 36 0.072 tr:Q9WJD2_9VIRU Nonstructural polyprotein. Venezuelan equine enc... 36 0.075 tr:O69152_PHOPR Exodeoxyribonuclease V subunit. Photobacterium p... 36 0.076 tr:Q8PEL4_XANAC Exodeoxyribonuclease V alpha chain. Xanthomonas ... 36 0.076 tr:Q7VBK0_PROMA ATP-dependent exoDNAse beta subunit. Prochloroco... 36 0.078 tr:Q6FQB4_CANGA Similar to tr|Q12039 Saccharomyces cerevisiae YO... 36 0.079 tr:Q8KDI0_CHLTE Exodeoxyribonuclease V, alpha subunit. Chlorobiu... 36 0.079 tr:Q5YR07_NOCFA Putative ATP-dependent DNA helicase. Nocardia fa... 36 0.080 tr:Q6LMZ5_PHOPR Putative exodeoxyribonuclease V, 67 kDa subunit.... 36 0.080 tr:Q817Y5_BACCR Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)... 36 0.080 tr:Q64X75_BACFR Hypothetical protein. Bacteroides fragilis. 36 0.082 tr:Q97SG8_STRPN Helicase, putative. Streptococcus pneumoniae. 36 0.083 tr:Q5QUT0_IDILO Superfamily I DNA helicase, UvrD. Idiomarina loi... 36 0.084 tr:Q9RDI9_STRCO Putative deoxyribonuclease. Streptomyces coelico... 36 0.084 tr:Q7QZA3_GIALA GLP_567_39852_37534. Giardia lamblia ATCC 50803. 36 0.085 tr:Q77NC4_9CORO Spike glycoprotein. Bovine coronavirus. 36 0.086 tr:Q6HT01_BACAN Helicase, putative. Bacillus anthracis. 36 0.091 tr:Q9YMS4_NPVLD Ld-helicase-2. Lymantria dispar multicapsid nucl... 36 0.091 tr:Q730D9_BACC1 Helicase, putative. Bacillus cereus (strain ATCC... 36 0.091 tr:Q6KHF3_MYCMO ATP-dependent DNA helicase (EC 3.6.1.-). Mycopla... 35 0.092 tr:Q87QR6_VIBPA Putative ATP-dependent DNA helicase. Vibrio para... 35 0.094 tr:Q6UN12_PRRSV Replicase polyprotein 1B (Fragment). Porcine rep... 35 0.094 tr:Q5YBT6_PRRSL ORF1b polyprotein (Fragment). PRRSV LV4.2.1. 35 0.094 tr:Q6HDD2_BACHK Exodeoxyribonuclease V, alpha subunit (EC 3.1.11... 35 0.095 tr:Q81LJ4_BACAN Helicase, putative. Bacillus anthracis. 35 0.096 tr:Q634F1_BACCZ Exodeoxyribonuclease V, alpha subunit (EC 3.1.11... 35 0.097 tr:Q98PM4_MYCPU ATP-DEPENDENT HELICASE PCRA. Mycoplasma pulmonis. 35 0.097 tr:Q6MHJ5_BDEBA RRM3/PIF1 helicase homolog precursor. Bdellovibr... 35 0.098 tr:Q9CGH6_LACLA ATP-dependent helicase PcrA (EC 3.6.1.-). Lactoc... 35 0.099 tr:Q7NQR4_CHRVO Exodeoxyribonuclease V, alpha subunit (EC 3.1.11... 35 0.10 tr:Q88XQ1_LACPL ATP-dependent DNA helicase PcrA (EC 3.6.1.-). La... 35 0.10 tr:Q6G2T5_BARHE Hypothetical protein. Bartonella henselae (Rocha... 35 0.10 tr:Q7QS92_GIALA GLP_449_2218_2694. Giardia lamblia ATCC 50803. 35 0.10 tr:O84036_CHLTR Exodeoxyribonuclease V, Alpha. Chlamydia trachom... 35 0.11 tr:Q88791_WEEV Nonstructural polyprotein (Fragment). Western equ... 35 0.11 tr:Q89241_WEEV Nonstructural polyprotein (Fragment). Western equ... 35 0.11 tr:Q9DJN7_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 35 0.11 tr:Q7MTA3_PORGI UvrD/REP helicase domain protein. Porphyromonas ... 35 0.11 tr:Q9J1K2_WEEV Nonstructural polyprotein. Western equine encepha... 35 0.12 tr:Q81TW1_BACAN ATP-dependent nuclease, subunit A. Bacillus anth... 35 0.12 tr:Q9WJC9_9VIRU Nonstructural polyprotein. Venezuelan equine enc... 35 0.12 tr:Q9YJX8_SINDV Nonstructural polyprotein. Sindbis virus. 35 0.12 tr:Q5KWU0_GEOKA ATP-dependent exonuclease V. Geobacillus kaustop... 35 0.12 tr:Q9DJS0_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 35 0.12 tr:Q9DJS2_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 35 0.12 tr:Q7Y474_9CAUD Dda DNA helicase. Enterobacteria phage RB49. 35 0.12 tr:Q73C23_BACC1 ATP-dependent nuclease, subunit A. Bacillus cere... 35 0.12 tr:Q696P8_CVHOC Spike surface glycoprotein. Human coronavirus (s... 35 0.12 tr:Q9WJC8_9VIRU Nonstructural polyprotein. Venezuelan equine enc... 35 0.13 tr:Q9WJD0_9VIRU Nonstructural polyprotein. Venezuelan equine enc... 35 0.13 tr:Q63EM2_BACCZ ATP-dependent nuclease, subunit A. Bacillus cere... 35 0.13 tr:Q5HUL4_CAMJR Hypothetical protein. Campylobacter jejuni (stra... 35 0.13 tr:Q7ULR2_RHOBA Probable swi/snf family helicase 2. Rhodopirellu... 35 0.13 tr:Q9PNY8_CAMJE Putative helicase. Campylobacter jejuni. 35 0.14 tr:Q92NP4_RHIME PROBABLE DNA HELICASE II PROTEIN (EC 3.6.1.-). R... 35 0.14 tr:Q88C31_PSEPK DNA helicase II. Pseudomonas putida (strain KT24... 35 0.14 tr:Q6U9W7_PRRSV ORF1b (Fragment). Porcine reproductive and respi... 35 0.14 tr:Q6N616_RHOPA ATP-dependent DNA helicase (EC 3.6.1.-). Rhodops... 35 0.15 tr:Q9DJN1_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 35 0.15 tr:Q9DJN5_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 35 0.15 tr:Q8Y717_LISMO Lmo1509 protein. Listeria monocytogenes. 35 0.15 tr:Q9DJL6_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 35 0.15 tr:Q71ZG1_LISMF Helicase, putative, RecD/TraA family. Listeria m... 35 0.15 tr:Q89FY7_BRAJA DNA helicase II. Bradyrhizobium japonicum. 35 0.15 tr:Q6A9G2_PROAC Transfer protein homolog TraA. Propionibacterium... 35 0.15 tr:Q9WJD1_9VIRU Nonstructural polyprotein. Venezuelan equine enc... 35 0.15 tr:Q9WJD3_9VIRU Nonstructural polyprotein. Venezuelan equine enc... 35 0.15 tr:Q7VNC7_HAEDU Exodeoxyribonuclease V, alpha subunit. Haemophil... 34 0.16 tr:Q6GAV9_STAAS Hypothetical protein. Staphylococcus aureus (str... 34 0.17 tr:Q5HHB7_STAAC Exonuclease RexA. Staphylococcus aureus (strain ... 34 0.18 tr:Q7A6H4_STAAN SA0828 protein. Staphylococcus aureus (strain N3... 34 0.18 tr:Q99VC3_STAAM Similar to ATP-dependent nuclease subunit A. Sta... 34 0.18 tr:Q8NXE9_STAAW MW0849 protein. Staphylococcus aureus (strain MW2). 34 0.18 tr:Q9IFX0_9CLOS P349 protein. Citrus tristeza virus. 34 0.18 tr:Q9DJP8_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 34 0.18 tr:Q8K8J7_STRP3 Putative SNF helicase. Streptococcus pyogenes (s... 34 0.19 tr:Q5XDR2_STRP6 SWF/SNF family helicase. Streptococcus pyogenes ... 34 0.19 tr:Q9A1C9_STRPY Putative SNF helicase. Streptococcus pyogenes. 34 0.19 tr:Q6TNF9_CVHOC S protein. Human coronavirus (strain OC43) (HCoV... 34 0.19 tr:Q8P2J4_STRP8 Putative SNF helicase. Streptococcus pyogenes (s... 34 0.19 tr:Q9DJR0_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 34 0.20 tr:Q9R6F0_9RHIZ Tiorf109 protein. Agrobacterium tumefaciens. 34 0.20 tr:Q9DJQ2_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 34 0.20 tr:Q6FF15_ACIAD Exonuclease V, alpha subunit (EC 3.1.11.5). Acin... 34 0.20 tr:Q5FKT7_LACAC Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)... 34 0.21 tr:Q9DJP3_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 34 0.21 tr:Q8R698_FUSNN DNA helicase II (EC 3.6.1.-). Fusobacterium nucl... 34 0.21 tr:Q9DJQ6_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 34 0.21 tr:Q9DJP5_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 34 0.21 tr:Q7T738_9CLOS P182. Little cherry virus 2. 34 0.22 tr:Q8R8A3_THETN ATP-dependent exoDNAse (Exonuclease V), alpha su... 34 0.22 tr:Q58NS1_9CORO Spike glycoprotein. Bovine coronavirus. 34 0.23 tr:Q696Q6_CVHOC Spike surface glycoprotein. Human coronavirus (s... 34 0.23 tr:Q4ZYM0_PSESY Exodeoxyribonuclease V, alpha subunit (EC 3.1.11... 34 0.23 tr:Q6KHF5_MYCMO ATP-dependent DNA helicase (EC 3.6.1.-). Mycopla... 34 0.23 tr:Q8CPT9_STAEP ATP-dependent nuclease subunit A. Staphylococcus... 34 0.23 tr:Q97F87_CLOAB ATP-dependent exoDNAse (Exonuclease V), alpha su... 34 0.24 tr:Q5HQJ4_STAEQ Exonuclease RexA. Staphylococcus epidermidis (st... 34 0.24 tr:Q9DTG5_9CLOS 349-kDa polyprotein. Citrus tristeza virus. 34 0.24 tr:Q6HM43_BACHK ATP-dependent nuclease, subunit A. Bacillus thur... 34 0.24 tr:Q6KIJ7_MYCMO Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)... 34 0.24 tr:Q8JTI3_9CLOS Helicase (Fragment). Little cherry virus 2. 34 0.24 tr:Q92XJ5_RHIME Putative UvrD2 DNA helicase (EC 3.6.1.-). Rhizob... 34 0.25 tr:Q6GIC1_STAAR Hypothetical protein. Staphylococcus aureus (str... 34 0.25 tr:Q81GP9_BACCR ATP-dependent nuclease subunit A. Bacillus cereu... 34 0.25 tr:Q5X4A5_LEGPA Hypothetical protein. Legionella pneumophila (st... 34 0.25 tr:Q54Z42_DICDI Hypothetical protein. Dictyostelium discoideum (... 34 0.25 tr:Q5ZUI6_LEGPH ATP-dependent DNA helicase (UvrD/Rep helicase). ... 34 0.25 tr:Q60AZ5_METCA Exodeoxyribonuclease V, beta subunit (EC 3.1.11.... 34 0.25 tr:Q8L1Z1_PSESX Exonuclease V alpha subunit RecD. Pseudomonas sy... 34 0.26 tr:Q61EE1_CAEBR Hypothetical protein CBG12107. Caenorhabditis br... 34 0.26 tr:Q6NAB2_RHOPA Possible deoxyribonuclease. Rhodopseudomonas pal... 34 0.26 tr:Q8DSC6_STRMU Putative exodeoxyribonuclease V, similar to conj... 34 0.26 tr:Q6CAI0_YARLI Yarrowia lipolytica chromosome D of strain CLIB9... 34 0.26 tr:Q65LJ9_BACLD AddA (ATP-dependent deoxyribonuclease) (Subunit ... 34 0.27 tr:Q89EN2_BRAJA Exodeoxyribosylnuclease. Bradyrhizobium japonicum. 34 0.28 tr:Q82CL6_STRAW Putative exodeoxyribonuclease V. Streptomyces av... 34 0.29 tr:Q7Q395_ANOGA ENSANGP00000010202. Anopheles gambiae str. PEST. 34 0.29 tr:Q57CC0_BRUAB Hypothetical protein. Brucella abortus biovar 1 ... 34 0.29 tr:Q836J8_ENTFA Exonuclease RexA. Enterococcus faecalis (Strepto... 34 0.29 tr:Q8FZT4_BRUSU Hypothetical protein. Brucella suis. 34 0.29 tr:Q8YI26_BRUME EXODEOXYRIBONUCLEASE V ALPHA CHAIN (EC 3.1.11.5)... 34 0.29 tr:O10467_9CLOS 347-kDa polyprotein. Citrus tristeza virus. 34 0.29 tr:Q17645_CAEEL Hypothetical protein pgp-5. Caenorhabditis elegans. 34 0.29 tr:Q6NY68_BRARE Serine carboxypeptidase 1. Brachydanio rerio (Ze... 34 0.29 tr:Q9EYR3_LEGPN TraA-like protein. Legionella pneumophila. 34 0.30 tr:Q65TK5_MANSM RecD protein. Mannheimia succiniciproducens (str... 34 0.31 tr:Q5JVB0_HUMAN F-box only protein, helicase, 18. Homo sapiens (... 34 0.31 tr:Q9WJD4_9VIRU Nonstructural polyprotein. Venezuelan equine enc... 34 0.32 tr:Q5JVB1_HUMAN F-box only protein, helicase, 18. Homo sapiens (... 34 0.33 tr:Q9KPP7_VIBCH Exodeoxyribonuclease V, 67 kDa subunit (Exonucle... 34 0.33 tr:Q9DJM6_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 34 0.33 tr:Q9DJR6_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 34 0.34 tr:Q8RFZ6_FUSNN Transposase. Fusobacterium nucleatum (subsp. nuc... 34 0.34 tr:Q8A091_BACTN Putative helicase. Bacteroides thetaiotaomicron. 34 0.34 tr:Q9DJP7_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 34 0.34 tr:Q66K33_HUMAN FBXO18 protein (Fragment). Homo sapiens (Human). 33 0.35 tr:Q8RIQ9_FUSNN Transposase. Fusobacterium nucleatum (subsp. nuc... 33 0.35 tr:Q80ZG2_RAT Inositol 1,4,5-trisphosphate 3-kinase C. Rattus no... 33 0.35 tr:Q9WID7_9CLOS P349 protein. Citrus tristeza virus. 33 0.35 tr:Q8R6I3_FUSNN Transposase. Fusobacterium nucleatum (subsp. nuc... 33 0.36 tr:Q6ANK1_DESPS Related to exodeoxyribonuclease V, beta chain. D... 33 0.36 tr:Q9DJM9_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.36 tr:Q67PV5_SYMTH Putative DNA helicase. Symbiobacterium thermophi... 33 0.36 tr:Q9DJM5_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.36 tr:Q8RDZ9_FUSNN Transposase. Fusobacterium nucleatum (subsp. nuc... 33 0.37 tr:Q9DJM3_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.38 tr:Q9DJM4_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.38 tr:Q9DJQ5_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.38 tr:Q5DTV1_MOUSE MKIAA1789 protein (Fragment). Mus musculus (Mouse). 33 0.38 tr:Q88CB7_PSEPK ATP-dependent DNA helicase Rep. Pseudomonas puti... 33 0.39 tr:Q5HV15_CAMJR ATP-dependent DNA helicase, putative. Campylobac... 33 0.39 tr:Q88ZB6_LACPL DNA helicase (Putative). Lactobacillus plantarum. 33 0.39 tr:Q9DJM1_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.39 tr:Q9DJM0_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.40 tr:Q97LF8_CLOAB Superfamily I DNA and RNA helicase. Clostridium ... 33 0.40 tr:Q9DJM8_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.40 tr:Q62IT6_BURMA Exodeoxyribonuclease V, alpha subunit (EC 3.1.11... 33 0.40 tr:Q9DJN6_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.40 tr:Q9PPE2_CAMJE Putative ATP-dependent DNA helicase. Campylobact... 33 0.41 tr:Q9DJM7_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.41 tr:Q98KL4_RHILO Mll1421 protein. Rhizobium loti (Mesorhizobium l... 33 0.42 tr:Q8XQF1_RALSO PROBABLE ATP-DEPENDENT DNA HELICASE II PROTEIN (... 33 0.42 tr:Q9DJN3_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.42 tr:Q9DJN4_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.42 tr:Q82D59_STRAW Putative ATP-dependent helicase. Streptomyces av... 33 0.43 tr:Q5KKJ1_CRYNE DNA repair and recombination protein pif1, mitoc... 33 0.43 tr:Q55VP9_CRYNE Hypothetical protein. Cryptococcus neoformans va... 33 0.43 tr:Q83Q24_SHIFL Putative DEOR-type transcriptional regulator of ... 33 0.43 tr:Q9DJN0_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.43 tr:Q7N8T4_PHOLL Exodeoxyribonuclease V alpha chain. Photorhabdus... 33 0.44 tr:Q9DJL8_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.44 tr:Q88DZ6_PSEPK Exodeoxyribonuclease V, alpha subunit. Pseudomon... 33 0.44 tr:Q9DJL9_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.45 tr:Q9DJN8_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.45 tr:Q8UDU3_AGRT5 Exodeoxyribonuclease V. Agrobacterium tumefacien... 33 0.45 tr:Q9DJM2_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.45 tr:Q9DJS5_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.46 tr:Q9DJS6_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.46 tr:Q7P3P2_FUSNV Transposase. Fusobacterium nucleatum subsp. vinc... 33 0.47 tr:Q9DJL4_9CLOS Polyprotein (Fragment). Citrus tristeza virus. 33 0.47 tr:Q6SZN3_RHOFA Putative ATP-dependent DNA helicase protein (Fra... 33 0.48 tr:Q8V436_9CORO Spike structural protein. Bovine coronavirus. 33 0.49 tr:Q9QAR5_9CORO Spike glycoprotein. Bovine coronavirus. 33 0.49 tr:Q8NW86_STAAW MW1569 protein. Staphylococcus aureus (strain MW2). 33 0.50 tr:Q5HFE3_STAAC Helicase, putative, RecD/TraA family. Staphyloco... 33 0.50 tr:Q91A26_9CORO Spike structural protein. Bovine coronavirus. 33 0.50 tr:Q7A597_STAAN SA1447 protein. Staphylococcus aureus (strain N3... 33 0.50 tr:Q99TN0_STAAM Similar to deoxyribonuclease. Staphylococcus aur... 33 0.50 tr:Q6G8V0_STAAS Hypothetical protein. Staphylococcus aureus (str... 33 0.50 tr:Q58NR6_9CORO Spike glycoprotein. Bovine coronavirus. 33 0.50 tr:Q6WHZ8_BPKV4 Dda. Bacteriophage KVP40. 33 0.51 tr:Q5GUA0_XANOR Exodeoxyribonuclease V alpha chain. Xanthomonas ... 33 0.51 tr:Q6GG84_STAAR Hypothetical protein. Staphylococcus aureus (str... 33 0.51 tr:Q9QAQ8_9CORO Spike glycoprotein. Bovine coronavirus. 33 0.51 tr:Q58NR7_9CORO Spike glycoprotein. Bovine coronavirus. 33 0.51 tr:Q58NR8_9CORO Spike glycoprotein. Bovine coronavirus. 33 0.51 tr:Q58NR5_9CORO Spike glycoprotein. Bovine coronavirus. 33 0.51 tr:Q58NS0_9CORO Spike glycoprotein. Bovine coronavirus. 33 0.51 tr:Q7T5A1_9CORO Spike glycoprotein. Canine respiratory coronavirus. 33 0.51 tr:Q5WI67_BACSK DNA helicase. Bacillus clausii (strain KSM-K16). 33 0.52 tr:Q6J655_9VIRU Putative RNA-dependent RNA polymerase. Dendrolim... 33 0.52 tr:Q8YL64_ANASP Exodeoxyribonuclease V, alpha chain. Anabaena sp... 33 0.53 tr:Q7CY17_AGRT5 AGR_C_3671p. Agrobacterium tumefaciens (strain C... 33 0.55 tr:Q98LM6_RHILO Probable conjugal transfer protein; TraA. Rhizob... 33 0.55 tr:Q89IZ1_BRAJA ATP-dependent DNA helicase. Bradyrhizobium japon... 33 0.56 tr:Q6FPW0_CANGA Similar to sp|P38766 Saccharomyces cerevisiae YH... 33 0.57 tr:Q9HWB7_PSEAE Exodeoxyribonuclease V alpha chain. Pseudomonas ... 33 0.57 tr:Q9IMN1_9BROM Replicase 1a (Fragment). Hydrangea mosaic virus. 33 0.58 tr:Q9Y645_HUMAN DNA helicase homolog (Fragment). Homo sapiens (H... 33 0.59 tr:Q5HSU9_CAMJR Hypothetical protein. Campylobacter jejuni (stra... 32 0.60 tr:Q9PMI0_CAMJE Hypothetical protein Cj1482c. Campylobacter jejuni. 32 0.61 tr:Q5YRC4_NOCFA Putative helicase. Nocardia farcinica. 32 0.65 tr:Q8Y511_LISMO Lmo2267 protein. Listeria monocytogenes. 32 0.68 tr:Q6BQK7_DEBHA Similar to CA3002|CaPIF1 Candida albicans CaPIF1... 32 0.72 tr:Q8F7H8_LEPIN ATP-dependent exoDNAse, alpha subunit (EC 3.1.11... 32 0.74 tr:Q72NZ2_LEPIC Exodeoxyribonuclease v alpha chain. Leptospira i... 32 0.75 tr:Q8DSP2_STRMU Putative SNF helicase. Streptococcus mutans. 32 0.75 tr:Q8XMT9_CLOPE Hypothetical protein CPE0599. Clostridium perfri... 32 0.79 tr:Q8GHV1_PSERE Putative helicase. Pseudomonas resinovorans. 32 0.80 tr:Q73RK3_TREDE ATP-dependent DNA helicase, UvrD/Rep family. Tre... 32 0.80 tr:Q83JW0_SHIFL DNA helicase, ATP-dependent dsDNA/ssDNA exonucle... 32 0.81 tr:Q8X6M9_ECO57 DNA helicase, ATP-dependent dsDNA/ssDNA exonucle... 32 0.82 tr:Q8FEB3_ECOL6 Exodeoxyribonuclease V beta chain (EC 3.1.11.5).... 32 0.83 tr:Q63VG1_BURPS Putative exodeoxyribonuclease V alpha chain. Bur... 32 0.83 tr:O57161_9BROM Putative replicase. Spinach latent virus. 32 0.85 tr:Q6F1E4_MESFL Exodeoxyribonuclease V. Mesoplasma florum (Achol... 32 0.90 tr:Q6LA55_SCHPO SPAC3H5.09c protein. Schizosaccharomyces pombe (... 32 0.91 tr:Q5NMF2_ZYMMO DNA and RNA helicase. Zymomonas mobilis. 32 0.93 tr:Q8Q0V3_METMA Superfamily I DNA and RNA helicase. Methanosarci... 32 0.96 tr:Q98701_9BROM Replicase. Elm mottle virus. 32 0.97 tr:Q5MZ27_SYNP6 ATP-dependent helicase PcrA. Synechococcus sp. (... 32 0.99 >tr:Q51N50_MAGGR Hypothetical protein. Magnaporthe grisea 70-15. Length = 1105 Score = 302 bits (774), Expect = 3e-82 Identities = 134/263 (50%), Positives = 168/263 (63%), Gaps = 15/263 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A VV TC GA R L K KF V+IDE+ Q+ E EC+IPL+L K+ +LVGDHK Sbjct: 590 NADVVCCTCVGAGDPR----LAKLKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHK 645 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P I +KKAA KAGL +SLFERLV+LG++ +RLNVQYRMHP + PSN+FYEG L Sbjct: 646 QLGPVIMNKKAA-KAGLNQSLFERLVKLGLTPIRLNVQYRMHPCLSEFPSNMFYEG-SLQ 703 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + ++ +RL D FP P +P+ F N G EE G SY N EA V ++V Sbjct: 704 NGVTIQQRLRRDV----DFPWPVADMPMMFWSNLGNEEISASGTSYLNRTEASNVEKLVT 759 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRC-----SLKPVEVSTVDSFQGREKDIII 235 ++GV P DIGV+TPY GQ I + + + S K VEV++VD+FQGREKD I+ Sbjct: 760 RFFKAGVKPGDIGVVTPYEGQRSYIVSTMQNTGTFKKESYKEVEVASVDAFQGREKDFIV 819 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VRSN + IGFL D RRLNV Sbjct: 820 LSCVRSNESQGIGFLSDPRRLNV 842 >tr:Q8TFW3_ASPFU Possible regulator of nonsense transcripts. Aspergillus fumigatus (Sartorya fumigata). Length = 1060 Score = 300 bits (768), Expect = 2e-81 Identities = 134/263 (50%), Positives = 163/263 (61%), Gaps = 15/263 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ TC GA R L K KF V+IDE+ Q+ E EC+IPL+L K+ +LVGDH+ Sbjct: 545 NADVICCTCVGAGDPR----LAKLKFRTVLIDESTQSAEPECMIPLVLGCKQVVLVGDHQ 600 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P I +KKAA KAGL +SLFERLV LG S +RLNVQYRMHP + PSN+FYEG L Sbjct: 601 QLGPVIMNKKAA-KAGLNQSLFERLVILGCSPIRLNVQYRMHPCLSEFPSNMFYEG-SLQ 658 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + S RL D FP P P+ F N G EE G SY N EA V +IV Sbjct: 659 NGVSAFDRLRRDV----DFPWPVVDSPMMFWSNLGNEEISASGTSYLNRTEATNVEKIVT 714 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS-----LKPVEVSTVDSFQGREKDIII 235 ++GV P DIG+ITPY GQ I + + + + K +EV++VD+FQGREKD II Sbjct: 715 RFFKAGVQPADIGIITPYEGQRSYIVSSMQANGTFKKEHYKEIEVASVDAFQGREKDFII 774 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VRSN + IGFL D RRLNV Sbjct: 775 LSCVRSNDHQGIGFLSDPRRLNV 797 >tr:Q6MYI2_ASPFU Regulator of nonsense transcripts, putative. Aspergillus fumigatus (Sartorya fumigata). Length = 1079 Score = 300 bits (768), Expect = 2e-81 Identities = 134/263 (50%), Positives = 163/263 (61%), Gaps = 15/263 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ TC GA R L K KF V+IDE+ Q+ E EC+IPL+L K+ +LVGDH+ Sbjct: 564 NADVICCTCVGAGDPR----LAKLKFRTVLIDESTQSAEPECMIPLVLGCKQVVLVGDHQ 619 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P I +KKAA KAGL +SLFERLV LG S +RLNVQYRMHP + PSN+FYEG L Sbjct: 620 QLGPVIMNKKAA-KAGLNQSLFERLVILGCSPIRLNVQYRMHPCLSEFPSNMFYEG-SLQ 677 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + S RL D FP P P+ F N G EE G SY N EA V +IV Sbjct: 678 NGVSAFDRLRRDV----DFPWPVVDSPMMFWSNLGNEEISASGTSYLNRTEATNVEKIVT 733 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS-----LKPVEVSTVDSFQGREKDIII 235 ++GV P DIG+ITPY GQ I + + + + K +EV++VD+FQGREKD II Sbjct: 734 RFFKAGVQPADIGIITPYEGQRSYIVSSMQANGTFKKEHYKEIEVASVDAFQGREKDFII 793 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VRSN + IGFL D RRLNV Sbjct: 794 LSCVRSNDHQGIGFLSDPRRLNV 816 >tr:Q5BFN4_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. Length = 1062 Score = 300 bits (768), Expect = 2e-81 Identities = 132/263 (50%), Positives = 163/263 (61%), Gaps = 15/263 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ TC GA R L K KF V+IDE+ Q+ E EC+IPL+L K+ +LVGDH+ Sbjct: 547 NADVICCTCVGAGDPR----LAKLKFRTVLIDESTQSAEPECMIPLVLGCKQVVLVGDHQ 602 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P I +KKAA KAGL +SLFERLV LG S +RLNVQYRMHP + PSN+FYEG+ Sbjct: 603 QLGPVIMNKKAA-KAGLNQSLFERLVILGCSPIRLNVQYRMHPCLSEFPSNMFYEGSLQN 661 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 I+S R FP P P+ F N G EE G SY N EA V +IV Sbjct: 662 GITSFDR-----LRREVDFPWPILDSPMMFWSNLGNEEISASGTSYLNRTEAANVEKIVT 716 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS-----LKPVEVSTVDSFQGREKDIII 235 ++GV P+DIG+ITPY GQ I + + + + K +EV++VD+FQGREKD II Sbjct: 717 RFFKAGVQPKDIGIITPYEGQRSYIVSSMQATGTFKKEHYKEIEVASVDAFQGREKDFII 776 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VRSN + IGFL D RRLNV Sbjct: 777 LSCVRSNDHQGIGFLSDPRRLNV 799 >tr:Q6CW68_KLULA Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y- 1140 of Kluyveromyces lactis. Kluyveromyces lactis (Yeast). Length = 969 Score = 296 bits (759), Expect = 2e-80 Identities = 123/263 (46%), Positives = 157/263 (59%), Gaps = 16/263 (6%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A V+ TC GA KR +KF V+IDE+ QA E ECLIP++ K+ +LVGDH+ Sbjct: 544 KADVICCTCVGAGDKR-----LDYKFRTVLIDESTQASEPECLIPIVKGAKQVVLVGDHQ 598 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P I +KA AGL++SLFERL+ LG +RL VQYRM+P++ PSN+FYEG L Sbjct: 599 QLGPVILDRKAG-DAGLKQSLFERLISLGHIPIRLEVQYRMNPQLSEFPSNMFYEG-SLQ 656 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + ++ +R S FP P +P+ F N G EE G SY N EA +I+ Sbjct: 657 NGVTIEQRTIARST----FPWPIHTIPMMFWANYGREEISGNGTSYLNRIEAMNCEKIIT 712 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS-----LKPVEVSTVDSFQGREKDIII 235 L + GV PE IGVITPY GQ + + S VEV++VD+FQGREKD II Sbjct: 713 RLFKDGVKPEQIGVITPYEGQRAYVVQYMQMNGSMEKSLYMGVEVASVDAFQGREKDYII 772 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VR+N IGFL D RRLNV Sbjct: 773 LSCVRANERNTIGFLSDPRRLNV 795 >tr:Q8S3K7_ARATH UPF1 (Fragment). Arabidopsis thaliana (Mouse-ear cress). Length = 1243 Score = 289 bits (740), Expect = 3e-78 Identities = 133/263 (50%), Positives = 156/263 (59%), Gaps = 15/263 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ TC GAA R L F+F V+IDE+ QA E ECLIPL+L K+ +LVGDH Sbjct: 618 SADVICCTCVGAADLR----LSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHC 673 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P I KKAA AGL +SLFERLV LG+ +RL VQYRMHP + PSN FYEG L Sbjct: 674 QLGPVIMCKKAAR-AGLAQSLFERLVTLGIKPIRLQVQYRMHPALSEFPSNSFYEGT-LQ 731 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + ++ R FP P P+ F G EE G SY N EA V ++V Sbjct: 732 NGVTIIER----QTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANVEKLVT 787 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS-----LKPVEVSTVDSFQGREKDIII 235 L+SGV P IGVITPY GQ I N + S K +EV++VDSFQGREKD II Sbjct: 788 AFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYII 847 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VRSN + IGFL D RRLNV Sbjct: 848 LSCVRSNEHQGIGFLNDPRRLNV 870 >tr:Q75DS7_ASHGO ABR022Cp. Ashbya gossypii (Yeast) (Eremothecium gossypii). Length = 1000 Score = 288 bits (738), Expect = 5e-78 Identities = 125/263 (47%), Positives = 155/263 (58%), Gaps = 16/263 (6%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A VV TC GA KR KF V+IDE+ QA E ECLIP++ K+ +LVGDH+ Sbjct: 555 KADVVCCTCVGAGDKR-----LDSKFRTVLIDESTQASEPECLIPIIKGAKQVVLVGDHQ 609 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P I + A AGL++SLFERL+ LG +RL VQYRM+P + PSN+FYEG L Sbjct: 610 QLGPVILDRNAG-DAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGT-LQ 667 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + +V +R DS+ FP P +P+ F N G EE G SY N EA I+ Sbjct: 668 NGVTVEQRTVVDSS----FPWPICDIPMMFWANYGREEISANGTSYLNRIEAINCERIIT 723 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS-----LKPVEVSTVDSFQGREKDIII 235 L + GV PE IGV+TPY GQ I + S VEV++VD+FQGREKD II Sbjct: 724 RLFKDGVKPEQIGVVTPYEGQRAYIIQYMQMNGSMDKDLYMTVEVASVDAFQGREKDYII 783 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VR+N IGFL D RRLNV Sbjct: 784 LSCVRANDQQSIGFLTDPRRLNV 806 >tr:Q69VT5_ORYSA Putative type 1 RNA helicase. Oryza sativa (japonica cultivar-group). Length = 1277 Score = 287 bits (736), Expect = 1e-77 Identities = 136/263 (51%), Positives = 155/263 (58%), Gaps = 15/263 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ TC GA R L F+F V+IDE+ QA E ECLIPL+L K+ +LVGDH Sbjct: 653 SADVICCTCVGAGDPR----LANFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHC 708 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P I KKAA AGL +SLFERLV LGV RL VQYRMHP + PSN FYEG L Sbjct: 709 QLGPVIMCKKAAR-AGLAQSLFERLVILGVKPFRLQVQYRMHPCLSDFPSNCFYEGT-LQ 766 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + +V R FP P P+ F G EE G SY N EA V +IV Sbjct: 767 NGVTVNER----QTPGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVT 822 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS-----LKPVEVSTVDSFQGREKDIII 235 LRSGV P IGVITPY GQ I N ++ S K +EV++VDSFQGREKD II Sbjct: 823 TFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYII 882 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VRSN + IGFL D RRLNV Sbjct: 883 LSCVRSNEHQGIGFLNDPRRLNV 905 >tr:Q5KKH8_CRYNE ATP dependent helicase, putative. Cryptococcus neoformans (Filobasidiella neoformans). Length = 1090 Score = 285 bits (729), Expect = 6e-77 Identities = 130/262 (49%), Positives = 157/262 (59%), Gaps = 15/262 (5%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 A V+ TC GA R L KFKF V+IDEA Q+ E EC+IPL++ K+ +LVGDH+Q Sbjct: 592 ADVICTTCVGAGDPR----LAKFKFRTVLIDEATQSAEPECMIPLVMGCKQAVLVGDHQQ 647 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVD 121 L P I +KKAA AGL +SLFERLV LG +RL VQYRMHP + SNLFYEG L + Sbjct: 648 LGPVIMNKKAAR-AGLSQSLFERLVILGNHPIRLQVQYRMHPCLSEFSSNLFYEGT-LQN 705 Query: 122 ISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 + RL FP P P+ F N G EE G S+ N EA V ++V Sbjct: 706 GVTAPERLRKHV----DFPWPVADTPMFFHQNLGTEEISSSGTSFLNRTEASNVEKMVTK 761 Query: 182 LLRSGVPPEDIGVITPYNGQVELIRNILN-----SRCSLKPVEVSTVDSFQGREKDIIIL 236 +SGV P IGVITPY GQ I + + + K VEV++VD+FQGREKD IIL Sbjct: 762 FFKSGVLPNQIGVITPYEGQRSYIASYMQLHGSLKKDLYKEVEVASVDAFQGREKDYIIL 821 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 S VRSN + IGFL D RRLNV Sbjct: 822 SCVRSNEHQGIGFLNDPRRLNV 843 >tr:Q55VR1_CRYNE Hypothetical protein. Cryptococcus neoformans var. neoformans B-3501A. Length = 1089 Score = 285 bits (729), Expect = 6e-77 Identities = 130/262 (49%), Positives = 157/262 (59%), Gaps = 15/262 (5%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 A V+ TC GA R L KFKF V+IDEA Q+ E EC+IPL++ K+ +LVGDH+Q Sbjct: 592 ADVICTTCVGAGDPR----LAKFKFRTVLIDEATQSAEPECMIPLVMGCKQAVLVGDHQQ 647 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVD 121 L P I +KKAA AGL +SLFERLV LG +RL VQYRMHP + SNLFYEG L + Sbjct: 648 LGPVIMNKKAAR-AGLSQSLFERLVILGNHPIRLQVQYRMHPCLSEFSSNLFYEGT-LQN 705 Query: 122 ISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 + RL FP P P+ F N G EE G S+ N EA V ++V Sbjct: 706 GVTAPERLRKHV----DFPWPVADTPMFFHQNLGTEEISSSGTSFLNRTEASNVEKMVTK 761 Query: 182 LLRSGVPPEDIGVITPYNGQVELIRNILN-----SRCSLKPVEVSTVDSFQGREKDIIIL 236 +SGV P IGVITPY GQ I + + + K VEV++VD+FQGREKD IIL Sbjct: 762 FFKSGVLPNQIGVITPYEGQRSYIASYMQLHGSLKKDLYKEVEVASVDAFQGREKDYIIL 821 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 S VRSN + IGFL D RRLNV Sbjct: 822 SCVRSNEHQGIGFLNDPRRLNV 843 >tr:Q5A507_CANAL Hypothetical protein NAM7. Candida albicans SC5314. Length = 1019 Score = 284 bits (727), Expect = 1e-76 Identities = 130/265 (49%), Positives = 163/265 (61%), Gaps = 17/265 (6%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A+VV TC GAA +R L +F+F V+IDE+ QA E E LIP++ K+ ILVGDH+ Sbjct: 578 KAEVVCCTCVGAADRR----LSQFRFKTVLIDESTQASEPEVLIPIVKGAKQVILVGDHQ 633 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P I KKAA AGL++SLFERLV LG +RL VQYRMHP + PSN+FYEG L Sbjct: 634 QLGPVILDKKAA-DAGLKQSLFERLVFLGHVPIRLEVQYRMHPCLSEFPSNMFYEG-SLQ 691 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + + RL +S FP P P+ F N G EE G SY N EA V +I+ Sbjct: 692 NGVTSDDRLIEEST----FPWPVIDTPMMFWANYGREELSASGNSYLNRVEAMNVEKIIT 747 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRN-------ILNSRCSLKPVEVSTVDSFQGREKDI 233 L + G+ PE IGVITPY GQ + +L+ R VE+++VD+FQGREKD Sbjct: 748 KLFKDGIKPEQIGVITPYEGQRAYLVQFMSVNSTLLDKRDQYLNVEITSVDAFQGREKDF 807 Query: 234 IILSLVRSNRNGEIGFLRDERRLNV 258 IILS VR+N + IGFL D RRLNV Sbjct: 808 IILSCVRANDSQSIGFLSDPRRLNV 832 >tr:Q6FVZ1_CANGA Candida glabrata strain CBS138 chromosome D complete sequence. Candida glabrata (Yeast) (Torulopsis glabrata). Length = 964 Score = 284 bits (727), Expect = 1e-76 Identities = 126/263 (47%), Positives = 158/263 (60%), Gaps = 16/263 (6%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A VV TC GA +R + KF V+IDE+ QA E ECLIP++ K+ ILVGDH+ Sbjct: 545 QADVVCCTCVGAGDRRLDM-----KFRTVLIDESTQASEPECLIPIVKGAKQVILVGDHQ 599 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P I +KA+ AGL++SLFERL+ LG +RL VQYRM+P + PSN+FYEG L Sbjct: 600 QLGPVILERKAS-DAGLKQSLFERLISLGHIPIRLEVQYRMNPFLSEFPSNMFYEG-SLQ 657 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + + +R +S FP P +P+ F N G EE G SY N EA I+ Sbjct: 658 NGVTEEQRTLANST----FPWPINGIPMMFWANYGSEEMSANGTSYLNRTEAMNCERIIT 713 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKP-----VEVSTVDSFQGREKDIII 235 L R GV PE IGVITPY GQ + + +L VEV++VD+FQGREKD II Sbjct: 714 RLFRDGVKPEQIGVITPYEGQRAYVLQYMQMNGALDKELYSNVEVASVDAFQGREKDFII 773 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VR+N IGFLRD RRLNV Sbjct: 774 LSCVRANEQQMIGFLRDPRRLNV 796 >tr:Q7Q257_ANOGA ENSANGP00000014389 (Fragment). Anopheles gambiae str. PEST. Length = 1054 Score = 283 bits (724), Expect = 2e-76 Identities = 122/271 (45%), Positives = 159/271 (58%), Gaps = 22/271 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 EAK++AMTCT AA KRK L FK+D ++++EAAQ LE E IPLLL K+ Sbjct: 749 EAKIIAMTCTHAALKRKELVTMGFKYDNILMEEAAQILEIETFIPLLLQNPMDGYNRLKR 808 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 +I++GDH QLPP IK+ + +E+SLF RLV LGV + L+ Q R IC L Sbjct: 809 WIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTIDLDGQGRARSSICELYKWR 868 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + + L D+ V R EY AN GF Q I F +GV E EP Y YQN EA Sbjct: 869 Y---SRLGDLEHVHRWPEYCRANAGFAHEYQLINVEDF---NGVGESEPNPYFYQNLAEA 922 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC-----SLKPVEVSTVDSFQ 227 E+VV + Y+ G P E I ++T YNGQ LIR+++ SRC KP +V+TVD +Q Sbjct: 923 EYVVAVFMYMRLLGYPAEKISILTTYNGQKHLIRDVIESRCANNPMFGKPHKVTTVDKYQ 982 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G++ D I+LSLVR+ IG +RD RRL V Sbjct: 983 GQQNDYILLSLVRTK---TIGHIRDVRRLVV 1010 >tr:Q6BPM3_DEBHA Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii. Debaryomyces hansenii (Yeast) (Torulaspora hansenii). Length = 985 Score = 280 bits (718), Expect = 1e-75 Identities = 125/263 (47%), Positives = 155/263 (58%), Gaps = 17/263 (6%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 VV TC GA KR L KF V+IDE+ QA E E LIP++ K+ ILVGDH+QL Sbjct: 572 DVVCCTCVGAGDKR----LSNLKFRTVLIDESTQASEPEVLIPIVKGAKQVILVGDHQQL 627 Query: 63 PPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDI 122 P I KKA AGL++SLFERLV LG +RL VQYRM+P + PSN+FYEG L + Sbjct: 628 GPVILDKKAG-DAGLKQSLFERLVVLGHVPIRLEVQYRMNPCLSEFPSNMFYEG-SLQNG 685 Query: 123 SSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYL 182 + +RL +S FP P P+ F N G EE G S+ N EA V +I+ L Sbjct: 686 VTAKQRLIENSI----FPWPVLDNPMMFWANYGREEISGSGNSFLNRVEAMNVEKIITKL 741 Query: 183 LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-------PVEVSTVDSFQGREKDIII 235 + G+ P IGVITPY GQ I ++ +L VE+++VD+FQGREKD II Sbjct: 742 FKDGIEPSQIGVITPYEGQRAYIVQYMSMNSTLTELKEKYLEVEITSVDAFQGREKDFII 801 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VR+N IGFL D RRLNV Sbjct: 802 LSCVRANDLQVIGFLSDPRRLNV 824 >tr:Q9VGG9_DROME CG31368-PA, isoform A. Drosophila melanogaster (Fruit fly). Length = 1480 Score = 280 bits (716), Expect = 2e-75 Identities = 116/271 (42%), Positives = 157/271 (57%), Gaps = 22/271 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 EAK++AMTCT AA KRK L F++D ++++E+AQ LE E IPLLL K+ Sbjct: 1041 EAKIIAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDGLNRLKR 1100 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 +I++GDH QLPP IK+ + +E+SLF RLV LGV V L+ Q R IC L Sbjct: 1101 WIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLDGQGRARASICSLYKWR 1160 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + L D+ + R EY ANPGF Q I F GV E EP Y YQN EA Sbjct: 1161 Y---KKLEDLQHIFERDEYKQANPGFVHDYQLINVEDFK---GVGESEPNPYFYQNLAEA 1214 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC-----SLKPVEVSTVDSFQ 227 E++V + Y+ G P I ++T YNGQ LIR+++N+RC P +++TVD +Q Sbjct: 1215 EYIVAVYMYMRLLGYPAAKISILTTYNGQKHLIRDVINARCGNNPLIGWPHKITTVDKYQ 1274 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G++ D I++SLVR+ +G LRD RRL V Sbjct: 1275 GQQNDYILISLVRTK---AVGHLRDVRRLVV 1302 >tr:Q7KSN8_DROME CG31368-PB, isoform B. Drosophila melanogaster (Fruit fly). Length = 1477 Score = 280 bits (716), Expect = 2e-75 Identities = 116/271 (42%), Positives = 157/271 (57%), Gaps = 22/271 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 EAK++AMTCT AA KRK L F++D ++++E+AQ LE E IPLLL K+ Sbjct: 1041 EAKIIAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDGLNRLKR 1100 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 +I++GDH QLPP IK+ + +E+SLF RLV LGV V L+ Q R IC L Sbjct: 1101 WIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLDGQGRARASICSLYKWR 1160 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + L D+ + R EY ANPGF Q I F GV E EP Y YQN EA Sbjct: 1161 Y---KKLEDLQHIFERDEYKQANPGFVHDYQLINVEDFK---GVGESEPNPYFYQNLAEA 1214 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC-----SLKPVEVSTVDSFQ 227 E++V + Y+ G P I ++T YNGQ LIR+++N+RC P +++TVD +Q Sbjct: 1215 EYIVAVYMYMRLLGYPAAKISILTTYNGQKHLIRDVINARCGNNPLIGWPHKITTVDKYQ 1274 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G++ D I++SLVR+ +G LRD RRL V Sbjct: 1275 GQQNDYILISLVRTK---AVGHLRDVRRLVV 1302 >tr:Q7YU45_DROME RE35509p. Drosophila melanogaster (Fruit fly). Length = 1483 Score = 280 bits (716), Expect = 2e-75 Identities = 116/271 (42%), Positives = 157/271 (57%), Gaps = 22/271 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 EAK++AMTCT AA KRK L F++D ++++E+AQ LE E IPLLL K+ Sbjct: 1047 EAKIIAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDGLNRLKR 1106 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 +I++GDH QLPP IK+ + +E+SLF RLV LGV V L+ Q R IC L Sbjct: 1107 WIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLDGQGRARASICSLYKWR 1166 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + L D+ + R EY ANPGF Q I F GV E EP Y YQN EA Sbjct: 1167 Y---KKLEDLQHIFERDEYKQANPGFVHDYQLINVEDFK---GVGESEPNPYFYQNLAEA 1220 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC-----SLKPVEVSTVDSFQ 227 E++V + Y+ G P I ++T YNGQ LIR+++N+RC P +++TVD +Q Sbjct: 1221 EYIVAVYMYMRLLGYPAAKISILTTYNGQKHLIRDVINARCGNNPLIGWPHKITTVDKYQ 1280 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G++ D I++SLVR+ +G LRD RRL V Sbjct: 1281 GQQNDYILISLVRTK---AVGHLRDVRRLVV 1308 >tr:Q8MQK8_DROME GM03621p (Fragment). Drosophila melanogaster (Fruit fly). Length = 1006 Score = 280 bits (716), Expect = 2e-75 Identities = 116/271 (42%), Positives = 157/271 (57%), Gaps = 22/271 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 EAK++AMTCT AA KRK L F++D ++++E+AQ LE E IPLLL K+ Sbjct: 567 EAKIIAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDGLNRLKR 626 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 +I++GDH QLPP IK+ + +E+SLF RLV LGV V L+ Q R IC L Sbjct: 627 WIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLDGQGRARASICSLYKWR 686 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + L D+ + R EY ANPGF Q I F GV E EP Y YQN EA Sbjct: 687 Y---KKLEDLQHIFERDEYKQANPGFVHDYQLINVEDFK---GVGESEPNPYFYQNLAEA 740 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC-----SLKPVEVSTVDSFQ 227 E++V + Y+ G P I ++T YNGQ LIR+++N+RC P +++TVD +Q Sbjct: 741 EYIVAVYMYMRLLGYPAAKISILTTYNGQKHLIRDVINARCGNNPLIGWPHKITTVDKYQ 800 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G++ D I++SLVR+ +G LRD RRL V Sbjct: 801 GQQNDYILISLVRTK---AVGHLRDVRRLVV 828 >tr:Q8MSA2_DROME LP02069p. Drosophila melanogaster (Fruit fly). Length = 872 Score = 279 bits (714), Expect = 3e-75 Identities = 116/271 (42%), Positives = 157/271 (57%), Gaps = 22/271 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 EAK++AMTCT AA KRK L F++D ++++E+AQ LE E IPLLL K+ Sbjct: 433 EAKIIAMTCTHAALKRKELVNLGFRYDNILMEESAQILEIETFIPLLLQNPLDGLNRLKR 492 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 +I++GDH QLPP IK+ + +E+SLF RLV LGV V L+ Q R IC L Sbjct: 493 WIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRLGVPTVDLDGQGRARASICSLYKWR 552 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + L D+ + R EY ANPGF Q I F GV E EP Y YQN EA Sbjct: 553 Y---KKLEDLQHIFERDEYKQANPGFVHDYQLINVEDFK---GVGESEPNPYFYQNLAEA 606 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC-----SLKPVEVSTVDSFQ 227 E++V + Y+ G P I ++T YNGQ LIR+++N+RC P +++TVD +Q Sbjct: 607 EYIVAVYMYMRLLGYPAAKISILTTYNGQKHLIRDVINARCGNNPLIGWPHKITTVDKYQ 666 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G++ D I++SLVR+ +G LRD RRL V Sbjct: 667 GQQNDYILISLVRTK---AVGHLRDVRRLVV 694 >tr:Q6C803_YARLI Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica. Yarrowia lipolytica (Candida lipolytica). Length = 964 Score = 276 bits (707), Expect = 2e-74 Identities = 122/263 (46%), Positives = 158/263 (60%), Gaps = 15/263 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A+V+ TC+ A + L+ F V+IDE QA E ECLIPL+ K+ + VGDH+ Sbjct: 561 KAEVICCTCSTAGNF----KLQNLTFSAVLIDEVTQASEPECLIPLVHGCKQVVFVGDHQ 616 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P I + KAA AGL +SLFERL+ +G +RL VQYRMHP + PSN+FYEG+ Sbjct: 617 QLGPVILNSKAA-NAGLNKSLFERLILIGHVPIRLMVQYRMHPSLSEFPSNMFYEGSLQN 675 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 +++ +R L+Y FP PQ P+ F N G EE G S+ N EA IV Sbjct: 676 GVTTASRVLKY-----VDFPWPQPQHPMLFWSNLGQEEISASGTSFLNRTEAANCERIVT 730 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS-----LKPVEVSTVDSFQGREKDIII 235 L + GV P+ IGV+TPY GQ + + S S K VEV +VD+FQGREKD II Sbjct: 731 RLFKCGVAPDQIGVVTPYEGQRAYVTQYMVSSGSVDEAMYKGVEVQSVDAFQGREKDFII 790 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 L+ VRS++ G IGFL D RRLNV Sbjct: 791 LTCVRSSKTGGIGFLSDPRRLNV 813 >tr:Q7ZVZ4_BRARE Regulator of nonsense transcripts 1. Brachydanio rerio (Zebrafish) (Danio rerio). Length = 1100 Score = 274 bits (702), Expect = 8e-74 Identities = 125/263 (47%), Positives = 158/263 (60%), Gaps = 15/263 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ TC GA R L K +F ++IDE+ QA E EC++P++L K+ ILVGDH Sbjct: 589 NADVICCTCVGAGDPR----LAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHC 644 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P + KKAA KAGL +SLFERLV LG+ +RL VQYRMHP + PSN+FYEG L Sbjct: 645 QLGPVVMCKKAA-KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEG-SLQ 702 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + + A RL+ F PQ P+ F G EE G SY N EA V +I Sbjct: 703 NGVTAADRLKKGF----DFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT 758 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-----PVEVSTVDSFQGREKDIII 235 LL++G P+ IG+ITPY GQ + + SL VE+++VD+FQGREKD II Sbjct: 759 RLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII 818 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VR+N + IGFL D RRLNV Sbjct: 819 LSCVRANEHQGIGFLNDPRRLNV 841 >tr:Q6GYP5_MOUSE RENT1. Mus musculus (Mouse). Length = 1113 Score = 274 bits (701), Expect = 1e-73 Identities = 124/263 (47%), Positives = 158/263 (60%), Gaps = 15/263 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ TC GA R L K +F ++IDE+ QA E EC++P++L K+ ILVGDH Sbjct: 604 NADVICCTCVGAGDPR----LAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHC 659 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P + KKAA KAGL +SLFERLV LG+ +RL VQYRMHP + PSN+FYEG L Sbjct: 660 QLGPVVMCKKAA-KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEG-SLQ 717 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + + A R++ F PQ P+ F G EE G SY N EA V +I Sbjct: 718 NGVTAADRVKKGF----DFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT 773 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-----PVEVSTVDSFQGREKDIII 235 LL++G P+ IG+ITPY GQ + + SL VE+++VD+FQGREKD II Sbjct: 774 KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII 833 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VR+N + IGFL D RRLNV Sbjct: 834 LSCVRANEHQGIGFLNDPRRLNV 856 >tr:Q8K0N4_MOUSE Rent1 protein (Fragment). Mus musculus (Mouse). Length = 543 Score = 274 bits (701), Expect = 1e-73 Identities = 124/263 (47%), Positives = 158/263 (60%), Gaps = 15/263 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ TC GA R L K +F ++IDE+ QA E EC++P++L K+ ILVGDH Sbjct: 34 NADVICCTCVGAGDPR----LAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHC 89 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P + KKAA KAGL +SLFERLV LG+ +RL VQYRMHP + PSN+FYEG L Sbjct: 90 QLGPVVMCKKAA-KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEG-SLQ 147 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + + A R++ F PQ P+ F G EE G SY N EA V +I Sbjct: 148 NGVTAADRVKKGF----DFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT 203 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-----PVEVSTVDSFQGREKDIII 235 LL++G P+ IG+ITPY GQ + + SL VE+++VD+FQGREKD II Sbjct: 204 KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII 263 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VR+N + IGFL D RRLNV Sbjct: 264 LSCVRANEHQGIGFLNDPRRLNV 286 >tr:Q6PHQ5_MOUSE Rent1 protein. Mus musculus (Mouse). Length = 1124 Score = 274 bits (701), Expect = 1e-73 Identities = 124/263 (47%), Positives = 158/263 (60%), Gaps = 15/263 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ TC GA R L K +F ++IDE+ QA E EC++P++L K+ ILVGDH Sbjct: 615 NADVICCTCVGAGDPR----LAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHC 670 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P + KKAA KAGL +SLFERLV LG+ +RL VQYRMHP + PSN+FYEG L Sbjct: 671 QLGPVVMCKKAA-KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEG-SLQ 728 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + + A R++ F PQ P+ F G EE G SY N EA V +I Sbjct: 729 NGVTAADRVKKGF----DFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT 784 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-----PVEVSTVDSFQGREKDIII 235 LL++G P+ IG+ITPY GQ + + SL VE+++VD+FQGREKD II Sbjct: 785 KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII 844 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VR+N + IGFL D RRLNV Sbjct: 845 LSCVRANEHQGIGFLNDPRRLNV 867 >tr:Q6GNR2_XENLA MGC80941 protein. Xenopus laevis (African clawed frog). Length = 1098 Score = 274 bits (701), Expect = 1e-73 Identities = 124/263 (47%), Positives = 158/263 (60%), Gaps = 15/263 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ TC GA R L K +F ++IDE+ QA E EC++P++L K+ ILVGDH Sbjct: 588 NADVICCTCVGAGDPR----LAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHC 643 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P + KKAA KAGL +SLFERLV LG+ +RL VQYRMHP + PSN+FYEG L Sbjct: 644 QLGPVVMCKKAA-KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEG-SLQ 701 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + + A R++ F PQ P+ F G EE G SY N EA V +I Sbjct: 702 NGVTAADRVKKGF----DFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT 757 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-----PVEVSTVDSFQGREKDIII 235 LL++G P+ IG+ITPY GQ + + SL VE+++VD+FQGREKD II Sbjct: 758 KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII 817 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VR+N + IGFL D RRLNV Sbjct: 818 LSCVRANEHQGIGFLNDPRRLNV 840 >tr:Q9EQN5_RAT Antifreeze-enhancer binding protein AEP. Rattus norvegicus (Rat). Length = 988 Score = 272 bits (697), Expect = 3e-73 Identities = 126/262 (48%), Positives = 153/262 (58%), Gaps = 12/262 (4%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 A VV T TGA++ L + FDVV++DE AQALEA C IPLL A K IL GDHKQ Sbjct: 344 ADVVLATNTGASTDGPLKLLPEDYFDVVVVDECAQALEASCWIPLLKAP-KCILAGDHKQ 402 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 LPPT S KAA AGL SL ERL E V L VQYRMH I R S Y G L Sbjct: 403 LPPTTVSHKAA-LAGLSRSLMERLAEKHGAAVVRMLAVQYRMHQAITRWASEAMYHGQ-L 460 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY---SYQNPGEAEFVV 176 SVA L D PG T + VPL +D +G E E S NPGE V Sbjct: 461 TAHPSVAGHLLKD--LPGVADTEETSVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVT 518 Query: 177 EIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIIL 236 ++ L+ +GV DI VI PYN QV+L+R L+++ +E+ +VD FQGREK+ +IL Sbjct: 519 LHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNK--HPELEIKSVDGFQGREKEAVIL 576 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 + VRSNR GE+GFL ++RR+NV Sbjct: 577 TFVRSNRKGEVGFLAEDRRINV 598 >tr:Q6PIC8_HUMAN AQR protein (Fragment). Homo sapiens (Human). Length = 591 Score = 269 bits (688), Expect = 4e-72 Identities = 116/271 (42%), Positives = 156/271 (57%), Gaps = 22/271 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 EAK++AMTCT AA KR L FK+D ++++EAAQ LE E IPLLL K+ Sbjct: 137 EAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKR 196 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 +I++GDH QLPP IK+ + +E+SLF R V +GV V L+ Q R +C L + Sbjct: 197 WIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNLYNWR 256 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + L ++ V E+ +AN G Q I F GV E EP Y YQN GEA Sbjct: 257 Y---KNLGNLPHVQLLPEFSTANAGLLYDFQLINVEDF---QGVGESEPNPYFYQNLGEA 310 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPV-----EVSTVDSFQ 227 E+VV + Y+ G P + I ++T YNGQ LIR+I+N RC P+ +V+TVD FQ Sbjct: 311 EYVVALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQ 370 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G++ D I+LSLVR+ +G LRD RRL V Sbjct: 371 GQQNDYILLSLVRT---RAVGHLRDVRRLVV 398 >tr:Q54I89_DICDI Hypothetical protein. Dictyostelium discoideum (Slime mold). Length = 1331 Score = 268 bits (687), Expect = 4e-72 Identities = 120/263 (45%), Positives = 152/263 (57%), Gaps = 16/263 (6%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A V+ TC GA R L +F+F ++IDE+ QA E ECLIPL++ K+ ILVGDH+ Sbjct: 679 KADVICATCVGAGDPR----LSQFRFPHILIDESTQASEPECLIPLMMGAKQVILVGDHR 734 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P + KK AGL +SLFERL+ LG RL +QYRMHP + PSN YEG + Sbjct: 735 QLGPVLLCKKV-VDAGLSQSLFERLISLGHHPERLTIQYRMHPSLTEFPSNTSYEGQLVS 793 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 ++S D + FP PQ P+ F + +G EE G S+ N EA +IV Sbjct: 794 ELSHT------DRDSQSKFPWPQPKDPMFFFNCTGSEEISSSGTSFINTTEASICEKIVT 847 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS-----LKPVEVSTVDSFQGREKDIII 235 L G P IG+ITPY GQ I + + K +EV++VDSFQGREKD II Sbjct: 848 KFLELGSLPGQIGIITPYEGQRAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYII 907 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VRSN IGFL+D RRLNV Sbjct: 908 LSCVRSNDYQGIGFLQDPRRLNV 930 >tr:Q80TX8_MOUSE MKIAA0560 protein (Fragment). Mus musculus (Mouse). Length = 1500 Score = 268 bits (685), Expect = 7e-72 Identities = 116/271 (42%), Positives = 156/271 (57%), Gaps = 22/271 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 EAK++AMTCT AA KR L FK+D ++++EAAQ LE E IPLLL K+ Sbjct: 1054 EAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKR 1113 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 +I++GDH QLPP IK+ + +E+SLF R V +GV V L+ Q R +C L + Sbjct: 1114 WIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNLYNWR 1173 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + L ++ V E+ +AN G Q I F GV E EP Y YQN GEA Sbjct: 1174 Y---KNLGNLPHVQLLPEFSTANAGLLYDFQLINVEDF---QGVGESEPNPYFYQNLGEA 1227 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPV-----EVSTVDSFQ 227 E+VV + Y+ G P + I ++T YNGQ LIR+I+N RC P+ +V+TVD FQ Sbjct: 1228 EYVVALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQ 1287 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G++ D I+LSLVR+ +G LRD RRL V Sbjct: 1288 GQQNDYILLSLVRT---RAVGHLRDVRRLVV 1315 >tr:Q582F1_9TRYP Regulator of nonsense transcripts 1, putative. Trypanosoma brucei. Length = 842 Score = 268 bits (685), Expect = 7e-72 Identities = 122/263 (46%), Positives = 151/263 (57%), Gaps = 16/263 (6%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A VV TC GA R L+ KF V+IDEA Q E E LIPL+ K+ ILVGDH Sbjct: 514 NADVVCCTCIGAGDYR----LKTMKFKHVLIDEATQGTEPEVLIPLVRGAKQVILVGDHC 569 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P + S AA KAG + SLFERLV +G VRL+VQYRM+P + PS+ +YEG L Sbjct: 570 QLRPLVFS-TAAEKAGYQRSLFERLVLMGHRPVRLDVQYRMNPSLSFFPSHHYYEGT-LQ 627 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + + +R FP P P+ F + +G EE G SY N EA +IV Sbjct: 628 NGVTAEQRDA-----SEVFPWPDVTKPIFFYNATGNEELGSNGRSYLNRAEAALTEQIVT 682 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-----PVEVSTVDSFQGREKDIII 235 L++ GV P DIGVITPY Q +R+ L+ L VE+S+VD+FQGREK+ II Sbjct: 683 KLIQGGVEPGDIGVITPYRSQCRYLRSYLSRSGRLPMEVYDRVEISSVDAFQGREKEFII 742 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VRSN GF+ D RRLNV Sbjct: 743 LSCVRSNHRQGAGFVTDGRRLNV 765 >tr:O60306_HUMAN KIAA0560 protein (Fragment). Homo sapiens (Human). Length = 1521 Score = 268 bits (685), Expect = 7e-72 Identities = 116/271 (42%), Positives = 156/271 (57%), Gaps = 22/271 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 EAK++AMTCT AA KR L FK+D ++++EAAQ LE E IPLLL K+ Sbjct: 1067 EAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKR 1126 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 +I++GDH QLPP IK+ + +E+SLF R V +GV V L+ Q R +C L + Sbjct: 1127 WIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNLYNWR 1186 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + L ++ V E+ +AN G Q I F GV E EP Y YQN GEA Sbjct: 1187 Y---KNLGNLPHVQLLPEFSTANAGLLYDFQLINVEDF---QGVGESEPNPYFYQNLGEA 1240 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPV-----EVSTVDSFQ 227 E+VV + Y+ G P + I ++T YNGQ LIR+I+N RC P+ +V+TVD FQ Sbjct: 1241 EYVVALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQ 1300 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G++ D I+LSLVR+ +G LRD RRL V Sbjct: 1301 GQQNDYILLSLVRT---RAVGHLRDVRRLVV 1328 >tr:Q8CFQ3_MOUSE Aquarius. Mus musculus (Mouse). Length = 1481 Score = 268 bits (685), Expect = 7e-72 Identities = 116/271 (42%), Positives = 156/271 (57%), Gaps = 22/271 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 EAK++AMTCT AA KR L FK+D ++++EAAQ LE E IPLLL K+ Sbjct: 1035 EAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKR 1094 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 +I++GDH QLPP IK+ + +E+SLF R V +GV V L+ Q R +C L + Sbjct: 1095 WIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRVGVPTVDLDAQGRARASLCNLYNWR 1154 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + L ++ V E+ +AN G Q I F GV E EP Y YQN GEA Sbjct: 1155 Y---KNLGNLPHVQLLPEFSTANAGLLYDFQLINVEDF---QGVGESEPNPYFYQNLGEA 1208 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPV-----EVSTVDSFQ 227 E+VV + Y+ G P + I ++T YNGQ LIR+I+N RC P+ +V+TVD FQ Sbjct: 1209 EYVVALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQ 1268 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G++ D I+LSLVR+ +G LRD RRL V Sbjct: 1269 GQQNDYILLSLVRT---RAVGHLRDVRRLVV 1296 >tr:Q7PWZ4_ANOGA ENSANGP00000004153 (Fragment). Anopheles gambiae str. PEST. Length = 1120 Score = 267 bits (683), Expect = 1e-71 Identities = 120/262 (45%), Positives = 159/262 (60%), Gaps = 16/262 (6%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 A V+ TC GA R L++ KF+ ++IDE+ Q+ E EC++P++L K+ ILVGDH Q Sbjct: 621 ADVICCTCVGAGDLR----LQRIKFNSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQ 676 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVD 121 L P + KKAA KAGL +SLFERLV LG+ RL VQYRMHPE+ + PSN FYEG L + Sbjct: 677 LGPVVMCKKAA-KAGLSQSLFERLVALGIRPFRLEVQYRMHPELSQFPSNFFYEG-SLQN 734 Query: 122 ISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 + FP P P+ F+ G EE G SY N EA V +I Sbjct: 735 G-----VCADERKLKVDFPWPSPDCPMFFLVTQGQEEIAGSGTSYLNRTEASNVEKITTR 789 Query: 182 LLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-----PVEVSTVDSFQGREKDIIIL 236 L++G+ P+ IG+ITPY GQ + + + SL +E+++VD+FQGREKDIII+ Sbjct: 790 FLKAGIKPDQIGIITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIM 849 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 S VR+N + IGFL D RRLNV Sbjct: 850 SCVRANEHQGIGFLNDPRRLNV 871 >tr:Q5ZHN2_CHICK Hypothetical protein. Gallus gallus (Chicken). Length = 742 Score = 266 bits (680), Expect = 3e-71 Identities = 125/262 (47%), Positives = 157/262 (59%), Gaps = 12/262 (4%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 A VV T TGA+S L + FD+V+IDE AQALEA C IPLL A K IL GDHKQ Sbjct: 8 ASVVLATNTGASSDGPLKLLPENYFDLVVIDECAQALEASCWIPLLKAP-KCILAGDHKQ 66 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 LPPTI S KAAAK GL SL ER++E V L VQYRMH I + S+ Y G L Sbjct: 67 LPPTIISHKAAAK-GLSLSLMERVIERYGEKVVKMLTVQYRMHEAIMQWASSEMYGGR-L 124 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY---SYQNPGEAEFVV 176 SVA+ L D PG T + +PL +D +G E E S NPGE + V Sbjct: 125 TAHPSVAQHLLKD--LPGVTCTEETTIPLLLIDTAGCGLLELEVEDEQSKGNPGEVQLVG 182 Query: 177 EIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIIL 236 ++ L+ +GV D+ V+ PYN QV+++R L R +E+ +VD FQGREK+ +IL Sbjct: 183 LHIQALVDAGVKARDVAVVAPYNLQVDMLREHLCHR--YPELEIKSVDGFQGREKEAVIL 240 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 S VRSNR GE+GFL ++RR+NV Sbjct: 241 SFVRSNRKGEVGFLAEDRRINV 262 >tr:Q61MG2_CAEBR Hypothetical protein CBG08494. Caenorhabditis briggsae. Length = 1051 Score = 262 bits (670), Expect = 4e-70 Identities = 114/262 (43%), Positives = 151/262 (57%), Gaps = 15/262 (5%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 A V+ TC+ AA R L K + V+IDE+ QA E E L+ ++ ++ +LVGDH Q Sbjct: 579 ADVICCTCSSAADAR----LSKIRTRTVLIDESTQATEPEILVSIVRGVRQLVLVGDHCQ 634 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVD 121 L P + KKAA AGL +SLFERLV LG+ RL VQYRMHP + PSN FY+G+ Sbjct: 635 LGPVVICKKAAI-AGLSQSLFERLVLLGIRPFRLQVQYRMHPVLSEFPSNAFYDGSLQNG 693 Query: 122 ISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 ++ R+++ + P P F SG EE G S+ N EA V ++V Sbjct: 694 VTENERQMKGIDWS-----WPTPSKPAFFWHCSGAEELSASGTSFLNRTEAANVEKLVSK 748 Query: 182 LLRSGVPPEDIGVITPYNGQVELIRNILN-----SRCSLKPVEVSTVDSFQGREKDIIIL 236 L++ GV P IGVITPY GQ I N + + + VE+++VD+FQGREKD II+ Sbjct: 749 LIKGGVEPRQIGVITPYEGQRSFIVNYMQTQGTLNSKLYEGVEIASVDAFQGREKDYIIV 808 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 + VRSN IGFL D RRLNV Sbjct: 809 TCVRSNDILGIGFLSDPRRLNV 830 >tr:Q7SBU3_NEUCR Hypothetical protein. Neurospora crassa. Length = 1431 Score = 260 bits (665), Expect = 2e-69 Identities = 106/271 (39%), Positives = 144/271 (53%), Gaps = 22/271 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 EA+++AMT T AA +R +A F +D V+++EAAQ E E IP + K ++ Sbjct: 1028 EARIIAMTATHAAMRRGKIASLGFHYDNVVMEEAAQVTEIENFIPFAMQKPKDGKVPLQR 1087 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 +L GDH Q P I+S A LE+SLF RLV LGV + L++Q R P I L Sbjct: 1088 IVLCGDHYQNSPVIQSLAFRHYANLEQSLFSRLVRLGVPTINLDLQGRARPSISSLYKWR 1147 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + L D+ E+ +AN GF QFI + G E EP + QN GEA Sbjct: 1148 YP---SLNDLPHTMSATEFLTANAGFRYDYQFIDVPDYK---GQGESEPTPHFIQNLGEA 1201 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC-----SLKPVEVSTVDSFQ 227 E+ V I Y+ G P E I ++ Y GQ LI+++L RC P V+TVD +Q Sbjct: 1202 EYAVAIFMYMRLLGYPAEKISILATYAGQRALIKDVLGHRCAKNPIFGMPRIVTTVDKYQ 1261 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G + D IILSL R++R +G+LRD RRL V Sbjct: 1262 GEQNDYIILSLTRTSR---VGYLRDIRRLTV 1289 >tr:Q8IJY4_PLAF7 Regulator of nonsense transcripts, putative. Plasmodium falciparum (isolate 3D7). Length = 1554 Score = 260 bits (664), Expect = 2e-69 Identities = 125/261 (47%), Positives = 161/261 (61%), Gaps = 13/261 (4%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 EA V+ TC GA KR L+KF+F V++DEA Q+ E ECL+PL+ K+ +LVGDH Sbjct: 927 EADVICCTCVGAMDKR----LKKFRFRQVLVDEATQSTEPECLVPLVTGAKQIVLVGDHC 982 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P I KKAA AGL +SLFERLV LG++ RL VQYRMHP + PS +FY+G+ Sbjct: 983 QLGPIIVCKKAA-NAGLGKSLFERLVMLGITPFRLEVQYRMHPALSEFPSYVFYDGSLQN 1041 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 I+ R S FP P P+ F +++G+EE G SY N EA + ++V Sbjct: 1042 GITLKEREYPLKS-----FPWPNAKCPMFFYNSTGLEEMSASGTSYLNRSEASNMEKLVR 1096 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSL---KPVEVSTVDSFQGREKDIIILS 237 LL+ G+ P IGVITPY GQ I ++ S +EV++VD+FQGREKD I+LS Sbjct: 1097 TLLQCGLKPSQIGVITPYEGQRAYITSLFQKNISFQNSSDIEVASVDAFQGREKDFILLS 1156 Query: 238 LVRSNRNGEIGFLRDERRLNV 258 VRSN+ IGFL D RRLNV Sbjct: 1157 CVRSNKKLGIGFLNDPRRLNV 1177 >tr:Q52EB1_MAGGR Hypothetical protein. Magnaporthe grisea 70-15. Length = 1445 Score = 254 bits (650), Expect = 9e-68 Identities = 109/271 (40%), Positives = 148/271 (54%), Gaps = 22/271 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 EA++VAMT T AA +R +A FK+D V+++EAAQ E E IPL + K ++ Sbjct: 1040 EARIVAMTSTHAAIRRGEIASLGFKYDNVVVEEAAQITEIESFIPLAMQKPKAGHNGLQR 1099 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 +L GDH Q P I++ A LE+SLF RLV LGV + L+ Q R P I +L Sbjct: 1100 IVLCGDHLQNSPVIQNMAFRHYANLEQSLFSRLVRLGVPTISLDQQGRARPSIAKLYQWR 1159 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + N L ++ V E+ +AN GF QFI + G E EP + QN GEA Sbjct: 1160 Y---NNLGNLPHVETSDEFLTANAGFKYDYQFINVPDYK---GKGESEPSPHFIQNLGEA 1213 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC-----SLKPVEVSTVDSFQ 227 E+ V I +Y+ G P I ++T Y GQ L+R++L RC P V+TVD +Q Sbjct: 1214 EYAVAIYQYMRLLGYPANKISILTTYAGQRALVRDVLKHRCGRGQIFGLPKIVTTVDKYQ 1273 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G + D IILSL R+ R +G+LRD RRL V Sbjct: 1274 GEQNDYIILSLTRTAR---VGYLRDVRRLTV 1301 >tr:O67840_AQUAE DNA helicase. Aquifex aeolicus. Length = 530 Score = 253 bits (648), Expect = 2e-67 Identities = 116/268 (43%), Positives = 154/268 (57%), Gaps = 22/268 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A+VV T + A S+ L+ FDVVIIDEA QA E CLIPL+ KK I+ GDHK Sbjct: 235 RAQVVCTTNSTAGSE----VLQNLNFDVVIIDEATQATEPSCLIPLIKG-KKLIMAGDHK 289 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVR--LNVQYRMHPEICRLPSNLFYEGNG 118 QLPPT+ S++A L +LFERL++L + L +QYRM+ +I + +FYEG Sbjct: 290 QLPPTVLSQEAQEA--LSYTLFERLLDLYGEEIYEILRIQYRMNKKIMEFSNKMFYEGK- 346 Query: 119 LVDISSVARRLEYDSANPGFFPTP--------QFIVPLSFVDNSGVEEEEPEGYSYQNPG 170 L+ SV D NP + + F++ G E++ S+ N Sbjct: 347 LIADKSVENHTIKDLINPEKLKEIPEPFKSVLEPEKVVVFINVRGKEKQRRGSTSFYNEE 406 Query: 171 EAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGRE 230 EA+ V+IVEYL++ G+ E IGVI+PY QV + +L VEV TVD FQGRE Sbjct: 407 EAKVAVKIVEYLMKIGLRSEHIGVISPYEDQVNFLEELLKD----FEVEVKTVDGFQGRE 462 Query: 231 KDIIILSLVRSNRNGEIGFLRDERRLNV 258 K++II+S VRSN GEIGFL+D RRLNV Sbjct: 463 KEVIIISFVRSNEKGEIGFLKDYRRLNV 490 >tr:Q7TP99_RAT Ab1-133. Rattus norvegicus (Rat). Length = 2018 Score = 253 bits (647), Expect = 2e-67 Identities = 103/259 (39%), Positives = 149/259 (57%), Gaps = 17/259 (6%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A+VV MT TGAA R+ L ++ + +VI++EAA+ LEA + L A + IL+GDH+ Sbjct: 1081 DAQVVGMTTTGAAKYRQIL--QQVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQ 1138 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P+ A LE SLFERLV++ V VRLN Q+RM PEI RL + Y L Sbjct: 1139 QLRPSANVYDLAKNFNLEVSLFERLVKVNVPFVRLNYQHRMRPEIARLLTPHIY--QDLE 1196 Query: 121 DISSVARRLEYDS-ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 + SV + + ++ FF F E+E EG S+QN EA FVVE+ Sbjct: 1197 NHPSVLKYEQIKGVSSNLFFVEHNFP-----------EQEIQEGKSHQNQHEAHFVVELC 1245 Query: 180 EYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLV 239 +YLL P I ++T Y GQ+ +R ++ + + ++V VD +QG E D+I+LSLV Sbjct: 1246 QYLLCQEYLPSQITILTTYTGQLFCLRKLMPVK-TFAGIKVHVVDKYQGEENDVILLSLV 1304 Query: 240 RSNRNGEIGFLRDERRLNV 258 RSN+ G++GFL+ R+ V Sbjct: 1305 RSNQEGKVGFLQIPNRICV 1323 >tr:Q6AVE6_ORYSA Putative aquarius. Oryza sativa (japonica cultivar-group). Length = 1572 Score = 251 bits (642), Expect = 7e-67 Identities = 110/270 (40%), Positives = 151/270 (55%), Gaps = 21/270 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 +AK+VAMTCT AA KR+ FK+D ++++E+AQ LE E IP+LL + K+ Sbjct: 1100 QAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIETFIPMLLQRQEDGYARLKR 1159 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 IL+GDH QLPP +K+ + +++SLF R V LGV + LN Q R P I L + Sbjct: 1160 CILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGVPYIELNAQGRARPSIAELYNWR 1219 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + L D+ V + AN GF Q + D G E P + YQN GEA Sbjct: 1220 Y---RELGDLPYVREEAIFHKANSGFSYDYQ---LVDVPDFRGRGESAPSPWFYQNEGEA 1273 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVE----VSTVDSFQG 228 EF+V + Y+ G P I ++T YNGQ LIR+++N RC +E V+TVD FQG Sbjct: 1274 EFIVSVYIYMRLIGYPANKISILTTYNGQKLLIRDVINRRCKPWNIEPPSKVTTVDKFQG 1333 Query: 229 REKDIIILSLVRSNRNGEIGFLRDERRLNV 258 ++ D I+LSLVR+ +G LRD RRL V Sbjct: 1334 QQNDFILLSLVRTRF---VGHLRDVRRLIV 1360 >tr:Q9U1Q7_CAEEL Hypothetical protein Y80D3A.2. Caenorhabditis elegans. Length = 1481 Score = 251 bits (641), Expect = 8e-67 Identities = 110/271 (40%), Positives = 157/271 (57%), Gaps = 22/271 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 EAK++AMTCT AA +R L F++D ++++EAAQ LE E IPLLL K+ Sbjct: 1047 EAKIIAMTCTHAALRRNELVKLGFRYDNIVMEEAAQILEVETFIPLLLQNPQDGHNRLKR 1106 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 +I++GDH QLPP ++++ + +E+SLF RLV L V V+L+ Q R +I L Sbjct: 1107 WIMIGDHHQLPPVVQNQAFQKYSNMEQSLFARLVRLSVPNVQLDRQGRARAQIAELYQWR 1166 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + NGL ++ V ++ +AN GF QFI F +G E +P + YQN GEA Sbjct: 1167 Y---NGLGNLPHVDGLPQFQNANAGFAFPFQFIDIPDF---NGHGETQPSPHFYQNLGEA 1220 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC-----SLKPVEVSTVDSFQ 227 E+ + Y+ G P E I ++T YNGQ +LIR++ RC P +VSTVD +Q Sbjct: 1221 EYACALYTYMRILGYPAEKISILTTYNGQAQLIRDVFQRRCDTNPLIGMPAKVSTVDKYQ 1280 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G++ D IILSLV++ IG +RD RRL V Sbjct: 1281 GQQNDFIILSLVKT---RNIGHIRDVRRLVV 1308 >tr:Q9UZB6_PYRAB DNA helicase, putative. Pyrococcus abyssi. Length = 653 Score = 250 bits (638), Expect = 2e-66 Identities = 115/267 (43%), Positives = 142/267 (53%), Gaps = 22/267 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 EA VV T + AA + +DV IIDEA Q+ LIPL + +F+L GDHK Sbjct: 357 EADVVLTTNSSAALEVVDYDT----YDVAIIDEATQSTIPSILIPLNKVE-RFVLAGDHK 411 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGV-SVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPPTI S +A L +LFE L+E L VQYRM+ I PS FY G + Sbjct: 412 QLPPTILSLEAQE---LSRTLFEGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKII 468 Query: 120 VDISSVARRL--------EYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGE 171 D S L DS P + + + E + S +NP E Sbjct: 469 ADESVRGITLRDLVEYQSPNDSWGKILNPENVIVFIDTSKAENKWERQRRGSESRENPLE 528 Query: 172 AEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREK 231 AE V +IV+ LL GV PE IGVITPY+ Q +LI + VEV TVD +QGREK Sbjct: 529 AEIVAKIVDKLLSIGVKPEWIGVITPYDDQRDLISMK-----VPEDVEVKTVDGYQGREK 583 Query: 232 DIIILSLVRSNRNGEIGFLRDERRLNV 258 ++IILSLVRSN+ GEIGFL+D RRLNV Sbjct: 584 EVIILSLVRSNKLGEIGFLKDLRRLNV 610 >tr:Q7RQ16_PLAYO Nonsense mRNA reducing factor 1-related. Plasmodium yoelii yoelii. Length = 1297 Score = 247 bits (632), Expect = 1e-65 Identities = 121/261 (46%), Positives = 162/261 (62%), Gaps = 13/261 (4%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 EA V+ TC GA KR L++F+F+ V+IDEA Q+ E ECL+P++ K+ +LVGDH Sbjct: 807 EADVICTTCVGAMDKR----LKRFRFNQVLIDEATQSTEPECLVPIVTGAKQIVLVGDHC 862 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P I KKAA+ +GL +SLFERLV LG++ RL VQYRMHP + PS +FY+G Sbjct: 863 QLGPIIVCKKAAS-SGLGKSLFERLVMLGITPFRLEVQYRMHPCLSEFPSYVFYDGCLQN 921 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 I+ R + FP P P+ F +++G+EE G SY N EA+ + +V Sbjct: 922 GITLKEREYPLKN-----FPWPNSKYPMFFYNSNGLEEMSASGTSYLNRNEAQNMEVLVR 976 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK---PVEVSTVDSFQGREKDIIILS 237 LL +G+ IGVITPY GQ I ++ S + +EV++VD+FQGREKD I+LS Sbjct: 977 ALLNAGLKATQIGVITPYEGQRAYITSLFQKNISYQHCLDIEVASVDAFQGREKDFILLS 1036 Query: 238 LVRSNRNGEIGFLRDERRLNV 258 VRSN+ IGFL D RRLNV Sbjct: 1037 CVRSNKKLGIGFLNDPRRLNV 1057 >tr:Q8L5Y4_ARATH Hypothetical protein At2g38770. Arabidopsis thaliana (Mouse-ear cress). Length = 1509 Score = 245 bits (625), Expect = 6e-65 Identities = 108/271 (39%), Positives = 154/271 (56%), Gaps = 22/271 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 +AK+VAMTCT AA KR+ FK+D ++++E+AQ LE E IP+LL + K+ Sbjct: 1092 QAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIETFIPMLLQRQEDGHARLKR 1151 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 IL+GDH QLPP +K+ + +++SLF R V LG+ + LN Q R P + +L + Sbjct: 1152 CILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRARPSLAKLYNWR 1211 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + L D+S V + AN GF Q ++ D G E P + YQN GEA Sbjct: 1212 Y---RDLGDLSIVKEAPIFQRANAGFSYEYQ---LVNVPDYEGRGESTPSPWFYQNQGEA 1265 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS-----LKPVEVSTVDSFQ 227 E++V + Y+ G P I ++T YNGQ LIR+++N RC P +V+TVD FQ Sbjct: 1266 EYIVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRRCVPYPFIGPPSKVTTVDKFQ 1325 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G++ D I+LSLVR+ +G LRD RRL V Sbjct: 1326 GQQNDFILLSLVRTRF---VGHLRDVRRLVV 1353 >tr:Q9ZVJ8_ARATH Hypothetical protein At2g38770. Arabidopsis thaliana (Mouse-ear cress). Length = 1444 Score = 245 bits (625), Expect = 6e-65 Identities = 108/271 (39%), Positives = 154/271 (56%), Gaps = 22/271 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 +AK+VAMTCT AA KR+ FK+D ++++E+AQ LE E IP+LL + K+ Sbjct: 1092 QAKIVAMTCTHAALKRRDFLQLGFKYDNLLMEESAQILEIETFIPMLLQRQEDGHARLKR 1151 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 IL+GDH QLPP +K+ + +++SLF R V LG+ + LN Q R P + +L + Sbjct: 1152 CILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRARPSLAKLYNWR 1211 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + L D+S V + AN GF Q ++ D G E P + YQN GEA Sbjct: 1212 Y---RDLGDLSIVKEAPIFQRANAGFSYEYQ---LVNVPDYEGRGESTPSPWFYQNQGEA 1265 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS-----LKPVEVSTVDSFQ 227 E++V + Y+ G P I ++T YNGQ LIR+++N RC P +V+TVD FQ Sbjct: 1266 EYIVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRRCVPYPFIGPPSKVTTVDKFQ 1325 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G++ D I+LSLVR+ +G LRD RRL V Sbjct: 1326 GQQNDFILLSLVRTRF---VGHLRDVRRLVV 1353 >tr:Q5AXG6_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. Length = 1162 Score = 242 bits (617), Expect = 6e-64 Identities = 102/271 (37%), Positives = 142/271 (52%), Gaps = 22/271 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KK 52 EA+++AMT T AA +R+ +A F +D ++++EAAQ E E IP L K+ Sbjct: 775 EARIIAMTSTHAAMRRQEIADLGFHYDNIVMEEAAQITEVESFIPTALQNMKEGQLPLKR 834 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 +L GDH Q P I++ A E+SLF RL+ LGV + L+ Q R P I L Sbjct: 835 IVLCGDHLQNSPIIQNLAFRQYAHFEQSLFLRLIRLGVPAITLDQQGRARPSIAELFRWR 894 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + L ++ V + E+ AN GF QFI + G E EP + QN GEA Sbjct: 895 Y---QNLGNLPIVEQAPEFKQANAGFQFEYQFINVPDY---QGTGEREPTPHFVQNLGEA 948 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC-----SLKPVEVSTVDSFQ 227 E+ V I +Y+ G P I ++ Y GQ LI+++LN RC P V+TVD +Q Sbjct: 949 EYAVAIFQYMRLLGYPASKISILATYAGQTALIKDVLNHRCSKNTLFGMPKIVTTVDRYQ 1008 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G + D IILSL R+ +G+LRD RRL V Sbjct: 1009 GEQNDYIILSLTRT---RTVGYLRDVRRLTV 1036 >tr:Q8IDH3_PLAF7 Hypothetical protein PF13_0273. Plasmodium falciparum (isolate 3D7). Length = 2533 Score = 240 bits (612), Expect = 2e-63 Identities = 109/272 (40%), Positives = 145/272 (53%), Gaps = 26/272 (9%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--------KKF 53 A+V+AMTCT A+ R +A +F FD +IIDE Q E + +PLLL + K+ Sbjct: 2185 ARVIAMTCTHASINRSKIAKLQFYFDNIIIDECTQITENDTFLPLLLQENRYYKSKLKRI 2244 Query: 54 ILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLF 113 I VGD QLPP IK+K A E+SL++R + L + + LN Q RM EIC + F Sbjct: 2245 IFVGDSNQLPPIIKNKYIKDFANYEQSLYKRFLRLDLPSIYLNEQGRMRSEICNIY-KYF 2303 Query: 114 YEGNGLVDISSVARRLEY--DSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGE 171 Y + + + S NPGF T QFI S EE P Y YQN E Sbjct: 2304 YSKYNIEISNLECIYKDNFVKSFNPGFTYTYQFIHVPS-------EEYSPIPYFYQNLLE 2356 Query: 172 AEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC-----SLKPVEVSTVDSF 226 AE V I Y+ G P + I ++T YNGQ ELI +IL C P +V+TVD + Sbjct: 2357 AEMTVAIYMYMRLIGYPNDVITILTTYNGQKELILDILKKNCMYNKLIGMPKKVTTVDKY 2416 Query: 227 QGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG++ D IILSLVRS IG++++ +RL V Sbjct: 2417 QGKQNDYIILSLVRSRS---IGYMKNIKRLIV 2445 >tr:O27671_METTH Transcriptional control factor (Enhancer-binding protein). Methanobacterium thermoautotrophicum. Length = 642 Score = 239 bits (611), Expect = 2e-63 Identities = 118/265 (44%), Positives = 153/265 (57%), Gaps = 22/265 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 E++VV T + AA + ++ +FDV I+DEA+QA LIPL A +FIL GDH+ Sbjct: 342 ESQVVLSTNSSAALE----YIDGLRFDVAIVDEASQATIPSILIPLARAP-RFILAGDHR 396 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLV-ELGVSVVRLNVQYRMHPEICRLPSNLFYEGN-- 117 QLPPTI S+ A+ LE +LFE L+ LN QYRMHP I P+ FY+G Sbjct: 397 QLPPTILSRDASE---LERTLFEELIKRHPGRSRMLNCQYRMHPAIMEFPNREFYDGRIR 453 Query: 118 ---GLVDISSVAR-RLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAE 173 L DIS DS P ++ + G E S QNP EA+ Sbjct: 454 AHPSLEDISIRDIIEDVPDSDICQKLADPDPVLFIDTSGLDGCERRLKGSTSIQNPLEAD 513 Query: 174 FVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDI 233 V I L+R GV PE+IG+ITPY+ QV+LI +++ VEV++VD FQGREKD+ Sbjct: 514 LAVIISRSLMRMGVKPEEIGIITPYDDQVDLISSMI-------DVEVNSVDGFQGREKDV 566 Query: 234 IILSLVRSNRNGEIGFLRDERRLNV 258 II+S+VRSNRNG IGFL+D RRLNV Sbjct: 567 IIISMVRSNRNGSIGFLKDLRRLNV 591 >tr:Q8SR02_ENCCU INVOLVED IN mRNA DECAY CONTROL (DNA2/NAM7 HELICASE FAMILY). Encephalitozoon cuniculi. Length = 782 Score = 238 bits (607), Expect = 9e-63 Identities = 111/259 (42%), Positives = 145/259 (55%), Gaps = 21/259 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A+V+ TC + K +FKF V+IDEA Q+ E LIPL+ KK +LVGDHK Sbjct: 475 QAEVITCTCVTSGQK----MFNRFKFHCVLIDEAVQSTEPLSLIPLVYGCKKLVLVGDHK 530 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL PTI KK A +AG ++SLFERL+ +GV L+VQYRM ++C PS +FY G L Sbjct: 531 QLGPTILCKKVA-QAGFKQSLFERLISIGVVPYMLSVQYRMDADLCEWPSEMFYNGELLT 589 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNS-GVEEEEPEGYSYQNPGEAEFVVEIV 179 + R +P++F G EE G S+ N EA + I+ Sbjct: 590 GGKNFCRFDL--------------GIPVNFFYVCYGREEVSASGTSFVNQAEALYCESII 635 Query: 180 EYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLV 239 +L + GV IGVITPY GQ I N + +E+S VD FQGREKD II+SLV Sbjct: 636 RHLFKCGVTESQIGVITPYEGQRSYILNRIF-GAEPGNLEISNVDGFQGREKDFIIVSLV 694 Query: 240 RSNRNGEIGFLRDERRLNV 258 RSN IGF+ D+RR+NV Sbjct: 695 RSNLYQGIGFVGDKRRMNV 713 >tr:Q6F2U8_ORYSA Putative DNA helicase. Oryza sativa (japonica cultivar-group). Length = 651 Score = 237 bits (604), Expect = 2e-62 Identities = 115/260 (44%), Positives = 147/260 (56%), Gaps = 9/260 (3%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A VV T TGA+SK L+ FD+VIIDEAAQALE C I LL + +L GDH Sbjct: 354 NADVVLSTLTGASSK----KLDGITFDLVIIDEAAQALEMACWIALLKGP-RCVLAGDHL 408 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGV--SVVRLNVQYRMHPEICRLPSNLFYEGNG 118 QLPPTI+S +A K G+ ++LFERL E L +QYRMH I S Y N Sbjct: 409 QLPPTIQSAEAEKK-GMGKTLFERLTEAYGDQITSMLTIQYRMHELIMNWSSKELY-NNK 466 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEI 178 + SSVA + YD + + + L +EE + E S N GEA + Sbjct: 467 IKAHSSVADHMLYDIEEVKRSSSTEPTIILIDTTGCDMEEVKDEEESTMNEGEAAVSIAH 526 Query: 179 VEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSL 238 + L+ SGV DIG+ITPY QV ++ + N LK +E+STVD FQGREK+ II+S+ Sbjct: 527 AKLLVESGVRASDIGIITPYAAQVTCLKMMRNKDTKLKDLEISTVDGFQGREKEAIIISM 586 Query: 239 VRSNRNGEIGFLRDERRLNV 258 VRSN E+GFL D RR+NV Sbjct: 587 VRSNSKKEVGFLSDHRRMNV 606 >tr:Q9WXM0_THEMA DNA helicase, putative. Thermotoga maritima. Length = 650 Score = 234 bits (598), Expect = 8e-62 Identities = 114/268 (42%), Positives = 149/268 (55%), Gaps = 23/268 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 EA+VV T + AA + L FDVV++DEA+QA LIP+ KKF+L GDHK Sbjct: 356 EAQVVLSTNSSAALE----ILSGIVFDVVVVDEASQATIPSILIPISKG-KKFVLAGDHK 410 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLV-ELGVSVVRLNVQYRMHPEICRLPSNLFYEGN-- 117 QLPPTI S+ A L +LFE L+ L+ QYRM+ + PS FY+G Sbjct: 411 QLPPTILSEDAKD---LSRTLFEELITRYPEKSSLLDTQYRMNELLMEFPSEEFYDGKLK 467 Query: 118 -GLVDISSVARRLEYDSANPGFFPTPQ--FIVPLSFVDN----SGVEEEEPEGYSYQNPG 170 + L + N G F L F+D E + + S +NP Sbjct: 468 AAEKVRNITLFDLGVEIPNFGKFWDVVLSPKNVLVFIDTKNRSDRFERQRKDSPSRENPL 527 Query: 171 EAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGRE 230 EA+ V E+VE LL GV + IG+ITPY+ QV LIR ++ ++ VEV +VD FQGRE Sbjct: 528 EAQIVKEVVEKLLSMGVKEDWIGIITPYDDQVNLIRELIEAK-----VEVHSVDGFQGRE 582 Query: 231 KDIIILSLVRSNRNGEIGFLRDERRLNV 258 K++II+S VRSN+NGEIGFL D RRLNV Sbjct: 583 KEVIIISFVRSNKNGEIGFLEDLRRLNV 610 >tr:Q8U398_PYRFU Dna2-nam7 helicase family protein. Pyrococcus furiosus. Length = 655 Score = 232 bits (592), Expect = 4e-61 Identities = 113/267 (42%), Positives = 140/267 (52%), Gaps = 22/267 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 EA VV T + AA +DV IIDEA QA LIPL +FIL GDHK Sbjct: 357 EADVVLTTNSSAALDVVDAT----DYDVAIIDEATQATIPSILIPLNKVD-RFILAGDHK 411 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGV-SVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPPTI S +A L +LFE L+E L +QYRM+ I PS FY+G + Sbjct: 412 QLPPTILSLEAQE---LSHTLFEGLIEKYPWKSEMLTIQYRMNERIMEFPSREFYDGRIV 468 Query: 120 VDISSVARRLEYD--------SANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGE 171 D S L P + + + + E + S +NP E Sbjct: 469 ADESVKNITLADLGIKVNASGIWRDILDPNNVLVFIDTCMLENRFERQRRGSESRENPLE 528 Query: 172 AEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREK 231 A+ V +IVE LL SGV E +GVITPY+ Q +LI S + VEV TVD +QGREK Sbjct: 529 AKIVSKIVEKLLESGVKAEMMGVITPYDDQRDLI-----SLNVPEEVEVKTVDGYQGREK 583 Query: 232 DIIILSLVRSNRNGEIGFLRDERRLNV 258 ++IILS VRSN+ GEIGFL+D RRLNV Sbjct: 584 EVIILSFVRSNKAGEIGFLKDLRRLNV 610 >tr:Q5JFK3_PYRKO DNA helicase, UvrD/REP family. Pyrococcus kodakaraensis (Thermococcus kodakaraensis). Length = 661 Score = 232 bits (591), Expect = 5e-61 Identities = 111/268 (41%), Positives = 142/268 (52%), Gaps = 23/268 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 EA VV T A + ++ ++DV +IDEA QA LIP+ A K+F+L GDHK Sbjct: 362 EADVVLTTNASAGLE----VVDYGEYDVAVIDEATQATIPSVLIPINRA-KRFVLAGDHK 416 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELG-VSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPPTI S+KA L ++LFE L+E L VQYRM+ + PS FY+G Sbjct: 417 QLPPTILSEKAKE---LSKTLFEGLIERYPEKSEMLTVQYRMNERLMEFPSREFYDGKIK 473 Query: 120 VDISSVARRLEYDSANPGFF---------PTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG 170 S L + F P + + E + S +NP Sbjct: 474 AHESVKNITLADLGVSEPEFGNFWDEALKPENVLVFIDTSKREDRFERQRRGSDSRENPL 533 Query: 171 EAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGRE 230 EA+ V E VE LL GV P+ IGVITPY+ Q +LI S + +EV TVD +QGRE Sbjct: 534 EAKLVTETVEKLLEMGVKPDWIGVITPYDDQRDLI-----SSMVGEDIEVKTVDGYQGRE 588 Query: 231 KDIIILSLVRSNRNGEIGFLRDERRLNV 258 K+II+LS VRSNR GE+GFL D RRLNV Sbjct: 589 KEIIVLSFVRSNRRGELGFLTDLRRLNV 616 >tr:O58624_PYRHO 656aa long hypothetical DNA-binding protein. Pyrococcus horikoshii. Length = 656 Score = 232 bits (591), Expect = 7e-61 Identities = 112/267 (41%), Positives = 142/267 (53%), Gaps = 22/267 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 EA V+ T + AA + +DV IIDEA QA LIPL +FIL GDHK Sbjct: 357 EADVILTTNSSAALEVVDAT----DYDVAIIDEATQATIPSILIPLNKVD-RFILAGDHK 411 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGV-SVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPPTI S +A L +LFE L+E L +QYRM+ I PS FY+G + Sbjct: 412 QLPPTILSLEAQE---LSHTLFEGLIERYPWKSEMLTIQYRMNERIMEFPSKEFYDGRIV 468 Query: 120 VDISSVARRLEYD--------SANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGE 171 D L P+ + + + ++ E + S +NP E Sbjct: 469 ADERVKNITLGDLGIKVNATGIWRDILDPSNVLVFIDTCMLDNRFERQRRGSESRENPLE 528 Query: 172 AEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREK 231 A+ V +IVE LL SGV E IGVITPY+ Q +LI S + VEV TVD +QGREK Sbjct: 529 AKIVSKIVEKLLESGVKAEMIGVITPYDDQRDLI-----SLNVPEEVEVKTVDGYQGREK 583 Query: 232 DIIILSLVRSNRNGEIGFLRDERRLNV 258 ++IILS VRSN+ GEIGFL+D RRLNV Sbjct: 584 EVIILSFVRSNKVGEIGFLKDLRRLNV 610 >tr:Q9FGV0_ARATH Gb|AAD48967.1. Arabidopsis thaliana (Mouse-ear cress). Length = 536 Score = 230 bits (588), Expect = 1e-60 Identities = 95/267 (35%), Positives = 131/267 (49%), Gaps = 16/267 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL-AKKKFILVGDH 59 + + T + + +V+++DEAAQ E E + L L + IL+GD Sbjct: 221 KRMRIKDTDYLPSGAAEINEERTGNIEVLVVDEAAQLKECESVAALQLPGLRHAILIGDE 280 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLP + + + KA SLFERLV LG L+VQYRMHP I R P FY G + Sbjct: 281 FQLPAMVHNDQC-EKAKFGRSLFERLVLLGHKKHLLDVQYRMHPSISRFPYKEFYGGR-I 338 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 D ++V + G SF++ +EE +G S +N E V EI+ Sbjct: 339 KDAANVQESIYQKRFLQG-----NMFGSFSFINVGRGKEEFGDGDSPKNMVEVAVVSEII 393 Query: 180 EYLL---RSGVPPEDIGVITPYNGQVELIRNILNSR-----CSLKPVEVSTVDSFQGREK 231 L R +GVITPY GQV I+ + + L V V +VD FQG E+ Sbjct: 394 SNLFKVSRERKMKMSVGVITPYKGQVRAIQERIRDKYSSLSGELFTVNVRSVDGFQGGEE 453 Query: 232 DIIILSLVRSNRNGEIGFLRDERRLNV 258 DIII+S VRSN NG++GFL + +R NV Sbjct: 454 DIIIISTVRSNSNGKVGFLSNRQRANV 480 >tr:Q20371_CAEEL Hypothetical protein dna-2. Caenorhabditis elegans. Length = 1105 Score = 230 bits (587), Expect = 2e-60 Identities = 98/274 (35%), Positives = 135/274 (49%), Gaps = 22/274 (8%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 K + + L FDVVI+DEA+ LE L L + KF+LVGD KQ Sbjct: 796 MKTTPIVACTCHHVPRELLFSYRHFDVVIVDEASMVLEPLLLPVLATSN-KFVLVGDCKQ 854 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFY-----EG 116 L P + S+KA + ++ + VV L QYRM+ EI L S LFY G Sbjct: 855 LTPLVVSRKAKQEGAGISTMEKLQQSHPGVVVSLTSQYRMNREISVLSSKLFYENRLICG 914 Query: 117 NGLVDISSVARRLEYDSAN-----------PGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 N V SS+ R +Y A G + NS ++ E+ EG Sbjct: 915 NESVSRSSLDRTGDYIVAMDDGSDHIRKALSGDIKDSCVFLDTQSTINSKMQCEDGEGGG 974 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N GEA+ + E+ + + SGV P +IGV++ Y QV+ IR ILNS +EV+T+DS Sbjct: 975 MCNDGEAKLISELCQQFVMSGVKPHEIGVMSAYRRQVDHIRGILNS----DELEVNTIDS 1030 Query: 226 FQGREKDIIILSLVRSNR-NGEIGFLRDERRLNV 258 +QGREK +II SL +N + L+DERR+NV Sbjct: 1031 YQGREKRVIIWSLTWTNNSTKKSELLKDERRVNV 1064 >tr:Q7PP43_ANOGA ENSANGP00000013515. Anopheles gambiae str. PEST. Length = 1708 Score = 230 bits (587), Expect = 2e-60 Identities = 85/267 (31%), Positives = 118/267 (44%), Gaps = 28/267 (10%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A +V T ++ +F V IIDEA Q E L+PL K +LVGD Sbjct: 1408 GADIVCTTLGSCSTLASY--CTNLRFSVCIIDEATQCTELCSLLPLQYHLSKMVLVGDIN 1465 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVEL---------GVSVVRLNVQYRMHPEICRLPSN 111 QLP T+ ++ AG SLF RL + + L QYRMHP+IC P+ Sbjct: 1466 QLPATVLDQQC-IDAGFRASLFSRLYQSYAGAGGQPPEDGLKMLKTQYRMHPKICHWPNR 1524 Query: 112 LFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGE 171 FY G ++ + P + S +E Y N E Sbjct: 1525 YFYGG---QLKNATCTEA---------MRKTIPLKPYMVISLSYDQELTQAQYEIYNKDE 1572 Query: 172 AEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREK 231 FVVE+++ ++R +ITPY E + L S LK VEV ++DS QG+E Sbjct: 1573 ILFVVELMKQVVRCCDKHASFAIITPYARHKEEMIQSLRST-QLKRVEVHSIDSVQGKEF 1631 Query: 232 DIIILSLVRSNRNGEIGFLRDERRLNV 258 D++I+SL RSN GFL + R+NV Sbjct: 1632 DVVIISLARSN---GAGFLNNPERINV 1655 >tr:Q9FNX9_ARATH Putative helicase. Arabidopsis thaliana (Mouse-ear cress). Length = 635 Score = 229 bits (585), Expect = 3e-60 Identities = 118/262 (45%), Positives = 151/262 (57%), Gaps = 13/262 (4%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ T TGA ++ L+ FD+VIIDE AQALE C I LL + IL GDH Sbjct: 338 NADVILTTLTGALTR----KLDNRTFDLVIIDEGAQALEVACWIALLKG-SRCILAGDHL 392 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLFYEGNG 118 QLPPTI+S +A K GL +LFERL +L L VQYRMH I S Y+ Sbjct: 393 QLPPTIQSAEAERK-GLGRTLFERLADLYGDEIKSMLTVQYRMHELIMNWSSKELYDNK- 450 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY--SYQNPGEAEFVV 176 + SSVA + +D N + L VD +G + EE + S N GEAE + Sbjct: 451 ITAHSSVASHMLFDLENV--TKSSSTEATLLLVDTAGCDMEEKKDEEESTYNEGEAEVAM 508 Query: 177 EIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIIL 236 + L+ SGV P DIG+ITPY QV L+R + LK +E+STVD FQGREK+ II+ Sbjct: 509 AHAKRLMESGVQPSDIGIITPYAAQVMLLRILRGKEEKLKDMEISTVDGFQGREKEAIII 568 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 S+VRSN E+GFL+D+RR+NV Sbjct: 569 SMVRSNSKKEVGFLKDQRRMNV 590 >tr:O81047_ARATH Putative helicase. Arabidopsis thaliana (Mouse-ear cress). Length = 639 Score = 229 bits (585), Expect = 3e-60 Identities = 118/262 (45%), Positives = 151/262 (57%), Gaps = 13/262 (4%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ T TGA ++ L+ FD+VIIDE AQALE C I LL + IL GDH Sbjct: 342 NADVILTTLTGALTR----KLDNRTFDLVIIDEGAQALEVACWIALLKG-SRCILAGDHL 396 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLFYEGNG 118 QLPPTI+S +A K GL +LFERL +L L VQYRMH I S Y+ Sbjct: 397 QLPPTIQSAEAERK-GLGRTLFERLADLYGDEIKSMLTVQYRMHELIMNWSSKELYDNK- 454 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY--SYQNPGEAEFVV 176 + SSVA + +D N + L VD +G + EE + S N GEAE + Sbjct: 455 ITAHSSVASHMLFDLENV--TKSSSTEATLLLVDTAGCDMEEKKDEEESTYNEGEAEVAM 512 Query: 177 EIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIIL 236 + L+ SGV P DIG+ITPY QV L+R + LK +E+STVD FQGREK+ II+ Sbjct: 513 AHAKRLMESGVQPSDIGIITPYAAQVMLLRILRGKEEKLKDMEISTVDGFQGREKEAIII 572 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 S+VRSN E+GFL+D+RR+NV Sbjct: 573 SMVRSNSKKEVGFLKDQRRMNV 594 >tr:Q9U3F2_CAEEL Hypothetical protein dna-2. Caenorhabditis elegans. Length = 1069 Score = 228 bits (583), Expect = 5e-60 Identities = 98/274 (35%), Positives = 135/274 (49%), Gaps = 22/274 (8%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 K + + L FDVVI+DEA+ LE L L + KF+LVGD KQ Sbjct: 760 MKTTPIVACTCHHVPRELLFSYRHFDVVIVDEASMVLEPLLLPVLATSN-KFVLVGDCKQ 818 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFY-----EG 116 L P + S+KA + ++ + VV L QYRM+ EI L S LFY G Sbjct: 819 LTPLVVSRKAKQEGAGISTMEKLQQSHPGVVVSLTSQYRMNREISVLSSKLFYENRLICG 878 Query: 117 NGLVDISSVARRLEYDSAN-----------PGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 N V SS+ R +Y A G + NS ++ E+ EG Sbjct: 879 NESVSRSSLDRTGDYIVAMDDGSDHIRKALSGDIKDSCVFLDTQSTINSKMQCEDGEGGG 938 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N GEA+ + E+ + + SGV P +IGV++ Y QV+ IR ILNS +EV+T+DS Sbjct: 939 MCNDGEAKLISELCQQFVMSGVKPHEIGVMSAYRRQVDHIRGILNS----DELEVNTIDS 994 Query: 226 FQGREKDIIILSLVRSNR-NGEIGFLRDERRLNV 258 +QGREK +II SL +N + L+DERR+NV Sbjct: 995 YQGREKRVIIWSLTWTNNSTKKSELLKDERRVNV 1028 >tr:Q8TZ69_METKA Superfamily I DNA/RNA helicase. Methanopyrus kandleri. Length = 698 Score = 228 bits (583), Expect = 6e-60 Identities = 112/254 (44%), Positives = 139/254 (54%), Gaps = 24/254 (9%) Query: 21 LEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 LE +FDV ++DE +QA E LIP+ A K+FI+ GDHKQLPPTI S++A L + Sbjct: 391 LEDIEFDVAVVDEGSQATEPSALIPISRA-KRFIMAGDHKQLPPTILSEEAQ--PELSRT 447 Query: 81 LFERLVELGVS-VVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYD------- 132 LFERL+E L VQYRMH I P+ FY G L SSV R D Sbjct: 448 LFERLIEKHPKLSRMLRVQYRMHENIMEFPNREFYNGK-LEAHSSVRRHTLEDLGVGDPE 506 Query: 133 --SANPGFFPTPQFIVPLSFVDNSGVEEEEP------EGYSYQNPGEAEFVVEIVEYLLR 184 PL FVD S + E S +NP EA V + E L+R Sbjct: 507 VGRPWADVLH---PKEPLGFVDTSRLPERLRRERRRPGSKSRENPMEAAIVAFLSEQLVR 563 Query: 185 SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRN 244 G+ ED+ VI+PY+ QV+LI L+ VEV+TVD FQGREK+ +I+S VRSN Sbjct: 564 QGLSQEDLAVISPYDDQVDLISKSLDELGLG-DVEVNTVDGFQGREKEAVIVSFVRSNPK 622 Query: 245 GEIGFLRDERRLNV 258 GE+GFLRD RRLNV Sbjct: 623 GEVGFLRDMRRLNV 636 >tr:O28883_ARCFU DNA helicase, putative. Archaeoglobus fulgidus. Length = 648 Score = 228 bits (582), Expect = 6e-60 Identities = 110/252 (43%), Positives = 137/252 (54%), Gaps = 19/252 (7%) Query: 13 ASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAA 72 S S L + FD +IDEA+QA LIP+ A +KFIL GDH+QLPPT+ Sbjct: 358 ISTNSSAFLLEESFDTAVIDEASQATIPSVLIPINRA-RKFILAGDHRQLPPTVM----- 411 Query: 73 AKAGLEESLFERLVELG-VSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEY 131 L E+LFE+L+EL LNVQYRM+ ++ PS FY G + S A L Sbjct: 412 KAEKLSETLFEKLIELYPEKSQLLNVQYRMNEKLMEFPSREFYGGRIVAHESCTAIALSQ 471 Query: 132 D-SANPGFFPTPQFIVPLSFVDN----SGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSG 186 PL F+D + E + + S N EAE V EIV LL+ G Sbjct: 472 IAKREAEKLREILGDEPLVFIDTSKCKNRWEGKLADSTSRYNRLEAEIVTEIVTELLKMG 531 Query: 187 VPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGE 246 + E IGVITPY+ QV+L+R VEVS+VD FQGREK++II+S VRSNR E Sbjct: 532 LKKEQIGVITPYDDQVDLLREK-------VDVEVSSVDGFQGREKEVIIISFVRSNRKRE 584 Query: 247 IGFLRDERRLNV 258 IGFL D RRLNV Sbjct: 585 IGFLDDLRRLNV 596 >tr:Q51D15_ENTHI Regulator of nonsense transcripts 1, putative. Entamoeba histolytica HM-1:IMSS. Length = 937 Score = 228 bits (581), Expect = 8e-60 Identities = 105/263 (39%), Positives = 140/263 (53%), Gaps = 13/263 (4%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 E V+ TC GA R S LE D V+IDE+ QA E ECLI L + K+ LVGDH Sbjct: 543 ETDVICCTCCGALDTRLSGILE--HIDTVLIDESTQADEPECLICLNNSVKQLFLVGDHC 600 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P + S +A K GL +F RL++LG RL QYRMHP + S FY+G Sbjct: 601 QLGPILNSSRA-KKYGLGLPMFSRLLQLGHEPYRLQFQYRMHPCLSEFSSQTFYDGVLQN 659 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 ++++ R + + P+ F+ +G E G SY N E + +I+ Sbjct: 660 GVTALER-----QFPSLKYFWFKQNKPMMFIAANGKESYGSNGTSYINDEEVFIIEQIII 714 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSR-----CSLKPVEVSTVDSFQGREKDIII 235 +L + V P IGVITPY Q + I + L+ L +E+++VDSFQGREKD II Sbjct: 715 KMLGNKVSPSQIGVITPYIAQKQAIISRLSLNRRISEAQLNDIEIASVDSFQGREKDFII 774 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 S VRSN +IGFL +RLNV Sbjct: 775 FSTVRSNEISDIGFLSIPQRLNV 797 >tr:Q7UWP1_RHOBA DNA-binding protein SMUBP-2. Rhodopirellula baltica. Length = 763 Score = 225 bits (575), Expect = 4e-59 Identities = 106/263 (40%), Positives = 146/263 (55%), Gaps = 19/263 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ T T L FD+V++DE+ Q E +L A + IL GDH Sbjct: 469 RADVICTTTT-----IDEELLSDQSFDLVVVDESCQCTEPGMWQAILRAD-RLILAGDHC 522 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLV-ELGVSVVR-LNVQYRMHPEICRLPSNLFYEGNG 118 QLPPT+ S AA G+ +SL +RLV G + R L VQYRM+ I R S+ FY+G Sbjct: 523 QLPPTVLSDDAAR-IGMRDSLMQRLVHRYGEKIYRRLTVQYRMNESIMRFSSDHFYDGT- 580 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSG---VEEEEPEGYSYQNPGEAEFV 175 L+ +SV R L D N PL +D +G EE EP+G S N GEA+ + Sbjct: 581 LIADASVKRHLLCDLPNVEEN--DFTSEPLLLIDTAGAGYEEELEPDGQSKLNHGEAKVI 638 Query: 176 VEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIII 235 +++V+ L GV + I VI PY QV +R L+ L +E+ TVD FQGREK++++ Sbjct: 639 LQLVKQLADLGVTGDQIAVIAPYAAQVRNLRMRLD----LDGIEIDTVDGFQGREKEVVL 694 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 +++ RSN +GEIGFL D+RR NV Sbjct: 695 ITMTRSNPDGEIGFLSDQRRSNV 717 >tr:Q86IX9_DICDI Similar to Arabidopsis thaliana (Mouse-ear cress). At2g38770 protein. Dictyostelium discoideum (Slime mold). Length = 1033 Score = 225 bits (574), Expect = 6e-59 Identities = 109/294 (37%), Positives = 158/294 (53%), Gaps = 45/294 (15%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK------------ 50 K+VAMTCT AA KR L FKFD ++++E+AQ + E IPL L Sbjct: 665 KIVAMTCTHAALKRNELLRLGFKFDNLLMEESAQISDIESFIPLQLQLNSNEIGDAIIGV 724 Query: 51 -----------------KKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVV 93 K+ IL+GDH QLPP ++++ A + ++SLF RL+ L + + Sbjct: 725 DGDDNGNGNGNNISRGLKRVILIGDHNQLPPIVQNQSLAKYSHFDQSLFTRLIRLEIPHI 784 Query: 94 RLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDN 153 L+ Q R P I L S + GL D+ V +L++ ANPG Q I D Sbjct: 785 TLDRQGRSRPSISELFSWKY---KGLQDLPLVKEQLQFKLANPGLAYDYQLINVDES-DG 840 Query: 154 SGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC 213 GV E EP Y YQN GEAE++V + +YL+ G P E I V+T YNGQ L+R++ ++C Sbjct: 841 YGVGESEPTPYFYQNLGEAEYIVAMFQYLIAIGYPSEKITVLTTYNGQKNLLRDVFKAKC 900 Query: 214 S---------LKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 + P++++T+D +QG++ DII+LSLVR+ + G +RD RRL V Sbjct: 901 TPQDPKKTQYGLPLKITTIDKYQGQQNDIILLSLVRTKQ---YGHIRDVRRLIV 951 >tr:Q555Z2_DICDI Hypothetical protein. Dictyostelium discoideum (Slime mold). Length = 1487 Score = 224 bits (572), Expect = 1e-58 Identities = 109/294 (37%), Positives = 158/294 (53%), Gaps = 45/294 (15%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK------------ 50 K+VAMTCT AA KR L FKFD ++++E+AQ + E IPL L Sbjct: 1119 KIVAMTCTHAALKRNELLRLGFKFDNLLMEESAQISDIESFIPLQLQLNSNEIGDAIIGV 1178 Query: 51 -----------------KKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVV 93 K+ IL+GDH QLPP ++++ A + ++SLF RL+ L + + Sbjct: 1179 DGDDNGNGNGNNISRGLKRVILIGDHNQLPPIVQNQSLAKYSHFDQSLFTRLIRLEIPHI 1238 Query: 94 RLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDN 153 L+ Q R P I L S + GL D+ V +L++ ANPG Q I D Sbjct: 1239 TLDRQGRSRPSISELFSWKY---KGLQDLPLVKEQLQFKLANPGLAYDYQLINVDES-DG 1294 Query: 154 SGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC 213 GV E EP Y YQN GEAE++V + +YL+ G P E I V+T YNGQ L+R++ ++C Sbjct: 1295 YGVGESEPTPYFYQNLGEAEYIVAMFQYLIAIGYPSEKITVLTTYNGQKNLLRDVFKAKC 1354 Query: 214 S---------LKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 + P++++T+D +QG++ DII+LSLVR+ + G +RD RRL V Sbjct: 1355 TPQDPKKTQYGLPLKITTIDKYQGQQNDIILLSLVRTKQ---YGHIRDVRRLIV 1405 >tr:Q9FHU9_ARATH Similarity to nonsense-mediated mRNA decay trans-acting factors. Arabidopsis thaliana (Mouse-ear cress). Length = 701 Score = 224 bits (572), Expect = 1e-58 Identities = 96/266 (36%), Positives = 139/266 (52%), Gaps = 18/266 (6%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL-AKKKFILVGDH 59 A ++ T +GAA + D++++DEAAQ E E + L L + +L+GD Sbjct: 368 NADIIFCTASGAAD---MNPIRTGSVDLLVVDEAAQLKECESVAALQLSGLRHAVLIGDE 424 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLP + ++ KA SLFERLV LG + LNVQYRMHP I R P+ FY G + Sbjct: 425 LQLPAMVHNEIC-EKAKFGRSLFERLVLLGHNKHLLNVQYRMHPSISRFPNKEFYGGR-I 482 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 D ++V + G SF++ EEE +G+S +N E + EI+ Sbjct: 483 KDAANVQESIYQKRFLQG-----NMFGSFSFINVGRGEEEFGDGHSPKNMVEVAVISEII 537 Query: 180 EYLLR---SGVPPEDIGVITPYNGQVELIRNILNSRCS----LKPVEVSTVDSFQGREKD 232 L + +GV++PY GQV I+ ++ S L + V +VD FQG E+D Sbjct: 538 SNLFKVSSERRIKMSVGVVSPYKGQVRAIQERTTNKYSSLSGLFTLNVRSVDGFQGGEED 597 Query: 233 IIILSLVRSNRNGEIGFLRDERRLNV 258 III+S VRSN NG++GFL + +R NV Sbjct: 598 IIIISTVRSNGNGKVGFLNNRQRANV 623 >tr:Q7QU62_GIALA GLP_226_38825_42739. Giardia lamblia ATCC 50803. Length = 1304 Score = 224 bits (572), Expect = 1e-58 Identities = 97/259 (37%), Positives = 134/259 (51%), Gaps = 9/259 (3%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 AKVV TC+ + L + F +I+DE+ QA+E + L + +L+GDHK Sbjct: 995 SAKVVVCTCSTSYDNH----LSRVHFSSLIVDESTQAIEPDTLCAIGHGCSHIVLMGDHK 1050 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P + + A + L+ SL+ERL G+ L VQYRMHP + PSN FY G Sbjct: 1051 QLGPIVAT-NIARHSKLDLSLYERLQRAGIEPHSLTVQYRMHPALSAFPSNTFYNGMLQN 1109 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 ++ R+L + FP P P F G E G S +N E V IV+ Sbjct: 1110 GVTQADRQLIPKPLSIDSFPWPIPSTPSFFWHVQGTHEI-GHGTSLRNDTEILCVEAIVD 1168 Query: 181 YLLRS-GVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLV 239 LL+ + DIG++TPY+ Q I L V V++VD+FQG EK++II S V Sbjct: 1169 QLLKCYELKQSDIGIVTPYDYQKCQIEMQLKDAG-YSEVFVNSVDAFQGHEKEVIIFSTV 1227 Query: 240 RSNRNGEIGFLRDERRLNV 258 RS + IGFL+D+RRLNV Sbjct: 1228 RS-VDKHIGFLKDQRRLNV 1245 >tr:Q75JA0_DICDI Similar to Rattus norvegicus (Rat). Antifreeze-enhancer binding protein AEP (Hypothetical protein). Dictyostelium discoideum (Slime mold). Length = 1024 Score = 222 bits (567), Expect = 3e-58 Identities = 117/262 (44%), Positives = 153/262 (58%), Gaps = 15/262 (5%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 V+ T TGA+ S FD V+IDE AQALEA C IP+ K +L GDH+QLP Sbjct: 399 VILSTNTGASD---SSLKGIDNFDWVVIDECAQALEASCWIPIQKGN-KLLLAGDHQQLP 454 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGV--SVVRLNVQYRMHPEICRLPSNLFYEGNGLVD 121 PTI S +AA K GL +LFER+++ LNVQYRM+ +I S FY + ++ Sbjct: 455 PTIHSMEAA-KMGLSITLFERIIKQYGDQVSRLLNVQYRMNHKIMDWSSMEFY-NSKMIA 512 Query: 122 ISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEP---EGYSYQNPGEAEFVVEI 178 SV+ L +P T PL +D SG + EE EG S N GE V Sbjct: 513 DKSVSNHLLVTGDSPKIRNTLTTTCPLLMIDTSGCDMEESQDDEGESKFNNGEVIVVKRH 572 Query: 179 VEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSL 238 +E L+ GV P DIGVITPYNGQV+L+++ L+ + S E+ TVD FQGREKD+II+S+ Sbjct: 573 IEKLIECGVKPNDIGVITPYNGQVKLLKSYLSKKYSSM--EIGTVDGFQGREKDVIIISM 630 Query: 239 VRSNR--NGEIGFLRDERRLNV 258 VRSN ++GFL ++RR NV Sbjct: 631 VRSNTDAPHKVGFLTEDRRTNV 652 >tr:Q6CFH6_YARLI Similar to sp|P34243 Saccharomyces cerevisiae YKL017c DIP1 DNA helicase A. Yarrowia lipolytica (Candida lipolytica). Length = 649 Score = 222 bits (565), Expect = 6e-58 Identities = 115/267 (43%), Positives = 149/267 (55%), Gaps = 18/267 (6%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--KKFILVGD 58 +AKVV T G L+ +FD +IIDE +Q+LE +C IP+ +K I+ GD Sbjct: 341 QAKVVCATLHGTGD----SCLKDVQFDTIIIDEISQSLEPQCWIPISRYPSAQKLIIAGD 396 Query: 59 HKQLPPTIKSKKAAAKAGLEESLFERLV-ELGVSVVRLNVQYRMHPEICRLPSNLFYEGN 117 ++QLPPT+K +++ K LE +LF+ LV L VQYRMH I + PS Y G Sbjct: 397 NQQLPPTVKCEQSKIKKQLELTLFDHLVGNYDNIRRLLKVQYRMHDAIMQFPSQELYGGQ 456 Query: 118 GLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPE------GYSYQNPGE 171 LV SSVAR D P + P+ ++D G + E E S N E Sbjct: 457 -LVAHSSVARHTLAD--LPHVTEDYETTTPVVWIDTQGDDFYEQEDESGKLNPSRLNDSE 513 Query: 172 AEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREK 231 A V V LL GV +IGVITPY+ Q LIR+++ + VEV+TVDSFQGREK Sbjct: 514 AYLVRRHVGKLLDLGVLESEIGVITPYSAQASLIRSLI--HPTNPAVEVATVDSFQGREK 571 Query: 232 DIIILSLVRSNRNGEIGFLRDERRLNV 258 + +ILSLVRSN N EIGFL + RRLNV Sbjct: 572 EAVILSLVRSNENHEIGFLGEYRRLNV 598 >tr:Q5Z4Y8_ORYSA Regulator of nonsense transcripts 1-like. Oryza sativa (japonica cultivar-group). Length = 788 Score = 220 bits (562), Expect = 1e-57 Identities = 99/264 (37%), Positives = 129/264 (48%), Gaps = 24/264 (9%) Query: 6 AMTCTGAASKRKSLALEK--FKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 A S S + FDVVIIDEAAQA+E LIPL+ K+ LVGD QLP Sbjct: 427 AAIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQAVEPATLIPLIHGCKQVFLVGDPVQLP 486 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS 123 T+ S A G SLF+R G V L +QYRMHPEI PS FYEG Sbjct: 487 ATVISSTAQKL-GYGTSLFKRFQAAGFPVQMLKIQYRMHPEISIFPSKEFYEG------- 538 Query: 124 SVARRLEYDSANPGFFPTPQF--IVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 LE P + P F D G E + S+ N E EF+ + Sbjct: 539 ----VLEDGEGLSKKRPWHSYSCFGPFCFFDVDGTESQPSGSGSWVNEDEVEFITLLYHQ 594 Query: 182 LLRSGVPP----EDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGREKDII 234 + P + VI+PY QV+L+++ S S + ++V+TVD FQGREK+++ Sbjct: 595 MAMR-YPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQSKEVIDVNTVDGFQGREKEVV 653 Query: 235 ILSLVRSNRNGEIGFLRDERRLNV 258 I S VR N+ +IGF+ D RR+NV Sbjct: 654 IFSCVRCNKEQKIGFVSDFRRMNV 677 >tr:Q7PNU2_ANOGA ENSANGP00000020616 (Fragment). Anopheles gambiae str. PEST. Length = 548 Score = 219 bits (559), Expect = 3e-57 Identities = 95/263 (36%), Positives = 134/263 (50%), Gaps = 24/263 (9%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 +VVAMT T AA R L L + +V+I+EAA+ LEA + L + IL+GDHKQL Sbjct: 255 RVVAMTTTFAARNRTLLEL--LRTPIVVIEEAAEVLEAHIVAALTRHTAQCILIGDHKQL 312 Query: 63 PPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDI 122 PT + +++ ++ SLFER++ SV + VQ+RM PE+ L L Y L D Sbjct: 313 RPTTSTYVLSSRYRMDLSLFERMINNRFSVATMTVQHRMRPEMADLLRPLIYPV--LDDA 370 Query: 123 SSVARRLEYD-SANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 +VA R FF T + E + S +N E F++ + EY Sbjct: 371 ETVATRPNVAGMMRNMFFLTHNYP-------------EGGDEKSKKNIFECRFLLGLCEY 417 Query: 182 LLRSG-VPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVR 240 LL G PEDI ++T YNGQ+ +R SL V ++ +D++QG E I++LSLVR Sbjct: 418 LLAQGTYTPEDIVILTAYNGQMLQFVAEKKNRPSLHGVRIAVIDNYQGEESKIVLLSLVR 477 Query: 241 S-----NRNGEIGFLRDERRLNV 258 S IGFL E R+ V Sbjct: 478 SGTGGNGGTDTIGFLAHENRICV 500 >tr:Q8QHA5_XENLA Helicase. Xenopus laevis (African clawed frog). Length = 1053 Score = 219 bits (559), Expect = 3e-57 Identities = 104/273 (38%), Positives = 144/273 (52%), Gaps = 26/273 (9%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 VVA TC G + +FD I+DEA+Q + CL PL A +F+LVGDH+QLP Sbjct: 739 VVATTCMGVNHP----IFTRRRFDFCIVDEASQISQPICLGPLFFAD-RFVLVGDHQQLP 793 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL---- 119 P +KS +A G+ ESLF+RL +VV+L VQYRM+ +I L + L YEG Sbjct: 794 PLVKSAEAREL-GMSESLFKRLERNQEAVVQLTVQYRMNSKIMALSNKLVYEGRLECASD 852 Query: 120 -------------VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 + + R +S P V + E E +G Sbjct: 853 RVSNAVVQLPHIKTLLLELEFRESQESMWIKDVLEPSNPVCFLNTEKIPALETEEKGG-I 911 Query: 167 QNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSF 226 N EA+ V + + L++G P DIG+I PY Q+++I N NS S VEV+TVD + Sbjct: 912 SNWIEAKLVFHLTKLYLKAGCRPSDIGIIAPYRQQLKMISNYFNS-LSASAVEVNTVDKY 970 Query: 227 QGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 QGR+K +II+S VRSN +G++G L+D RRLNV Sbjct: 971 QGRDKSVIIVSFVRSNIDGKLGDLLKDWRRLNV 1003 >tr:Q6BWT0_DEBHA Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces hansenii. Debaryomyces hansenii (Yeast) (Torulaspora hansenii). Length = 1968 Score = 219 bits (558), Expect = 4e-57 Identities = 96/265 (36%), Positives = 143/265 (53%), Gaps = 21/265 (7%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 +++ T +G+A LA KFD VIIDEA Q++E +IPL KK I+VGD QL Sbjct: 1533 QIICSTLSGSAHDF--LANMSMKFDQVIIDEACQSVELSAIIPLRYGCKKCIMVGDPNQL 1590 Query: 63 PPTIKSKKAAAKAGLEESLFERLVELG-VSVVRLNVQYRMHPEICRLPSNLFYEGNGLVD 121 PPT+ S+ AA+ E+SLF R+ ++ SV L+VQYRMHP I + PS+ FY Sbjct: 1591 PPTVLSQAAASF-NYEQSLFVRMQKMYPESVYLLDVQYRMHPAISKFPSSEFYFSR---- 1645 Query: 122 ISSVARRLEYDSANPGFFPTPQFIV--PLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 A P + P F D G ++ S N EA+ +E+V Sbjct: 1646 -----LHDGEGMAAKNSRPWHKDYPLSPYMFFDIVGKHQQNELSRSLFNYAEAQVALELV 1700 Query: 180 EYLLR---SGVPPEDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGREKDI 233 + L++ IG+I+PY Q+ ++++ + L ++ +TVD FQG+EK+I Sbjct: 1701 DKLIQILPQTEFSGRIGIISPYKEQIRTLKDVFKRKYGHSILSEIDFNTVDGFQGQEKEI 1760 Query: 234 IILSLVRSNRNGEIGFLRDERRLNV 258 II+S VR++ +G +GFL D RR+NV Sbjct: 1761 IIMSCVRASESGNVGFLSDVRRMNV 1785 >tr:Q7XH59_ORYSA Putative DNA2-NAM7 helicase family protein. Oryza sativa (japonica cultivar-group). Length = 1468 Score = 218 bits (557), Expect = 4e-57 Identities = 99/261 (37%), Positives = 138/261 (52%), Gaps = 17/261 (6%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 + T ++S RK + FD+V+IDEAAQA E L PL L + +LVGD +QLP T Sbjct: 970 IVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVLPPLSLGAARCVLVGDPQQLPAT 1029 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSV 125 + SK A SLFER G + L+VQYRMHP+I PS FY+G S V Sbjct: 1030 VISKAAGTLM-YSRSLFERFQLSGCPTILLSVQYRMHPQIREFPSRHFYQGRLTDSESVV 1088 Query: 126 ARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEG-YSYQNPGEAEFVVEIVEY--- 181 E + P F D S E G SYQN EA+FV+ + E Sbjct: 1089 KLPDEAYYRDALMA-------PYIFYDISHGRESHRGGSSSYQNVHEAQFVLRLYENLQK 1141 Query: 182 -LLRSGVPPEDIGVITPYNGQVELIRNILNSRCS---LKPVEVSTVDSFQGREKDIIILS 237 L +G +G+ITPY Q++ ++ S K + ++TVD+FQG+E+D+II+S Sbjct: 1142 FLRANGGKKASVGIITPYKLQLKCLQREFEEVMSTEDGKDIYINTVDAFQGQERDVIIMS 1201 Query: 238 LVRSNRNGEIGFLRDERRLNV 258 VR++ +G +GF+ D RR+NV Sbjct: 1202 CVRASNHG-VGFVADIRRMNV 1221 >tr:Q8W5K9_ORYSA Putative DNA2-NAM7 helicase family protein. Oryza sativa (Rice). Length = 1468 Score = 218 bits (557), Expect = 4e-57 Identities = 99/261 (37%), Positives = 138/261 (52%), Gaps = 17/261 (6%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 + T ++S RK + FD+V+IDEAAQA E L PL L + +LVGD +QLP T Sbjct: 970 IVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVLPPLSLGAARCVLVGDPQQLPAT 1029 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSV 125 + SK A SLFER G + L+VQYRMHP+I PS FY+G S V Sbjct: 1030 VISKAAGTLM-YSRSLFERFQLSGCPTILLSVQYRMHPQIREFPSRHFYQGRLTDSESVV 1088 Query: 126 ARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEG-YSYQNPGEAEFVVEIVEY--- 181 E + P F D S E G SYQN EA+FV+ + E Sbjct: 1089 KLPDEAYYRDALMA-------PYIFYDISHGRESHRGGSSSYQNVHEAQFVLRLYENLQK 1141 Query: 182 -LLRSGVPPEDIGVITPYNGQVELIRNILNSRCS---LKPVEVSTVDSFQGREKDIIILS 237 L +G +G+ITPY Q++ ++ S K + ++TVD+FQG+E+D+II+S Sbjct: 1142 FLRANGGKKASVGIITPYKLQLKCLQREFEEVMSTEDGKDIYINTVDAFQGQERDVIIMS 1201 Query: 238 LVRSNRNGEIGFLRDERRLNV 258 VR++ +G +GF+ D RR+NV Sbjct: 1202 CVRASNHG-VGFVADIRRMNV 1221 >tr:Q5AVM8_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. Length = 686 Score = 218 bits (557), Expect = 5e-57 Identities = 114/280 (40%), Positives = 151/280 (53%), Gaps = 35/280 (12%) Query: 5 VAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPP 64 V + A + L+ KFDVVIIDEA+QALEA+C IPLL A K +L GDH QLPP Sbjct: 403 VVLATLHGAGGHQ---LKNQKFDVVIIDEASQALEAQCWIPLLSAP-KVVLAGDHLQLPP 458 Query: 65 TIKS-------------KKAAAKAGLEESLFERLVELGVSVV--RLNVQYRMHPEICRLP 109 T+KS + A LE++LF+RL+ L + L QYRMH I R P Sbjct: 459 TVKSTPHKTKEAGEDGEQDANGSFSLEKTLFDRLLSLHGPGIKRMLTTQYRMHENIMRFP 518 Query: 110 SNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGV------------E 157 S+ YE L+ SV RL D T P+ F D G + Sbjct: 519 SDELYESK-LIAAESVKSRLLKDLPYNVH-ETDDTKEPVVFWDTQGGDFPEKVDDEEFAK 576 Query: 158 EEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKP 217 +E G S N EA V V+ L+++GV PEDI VITPYNGQ+ ++ +L + Sbjct: 577 KESLLGESKSNEMEALVVARHVDNLVQAGVRPEDIAVITPYNGQLAVLSQMLREK--YPD 634 Query: 218 VEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLN 257 +E+ +VD FQGREK+ +++SLVRSN E+GFL ++RRLN Sbjct: 635 LELGSVDGFQGREKEAVVVSLVRSNSEHEVGFLGEKRRLN 674 >tr:Q9FHU7_ARATH Similarity to nonsense-mediated mRNA decay trans-acting factors. Arabidopsis thaliana (Mouse-ear cress). Length = 880 Score = 218 bits (557), Expect = 6e-57 Identities = 90/275 (32%), Positives = 133/275 (48%), Gaps = 26/275 (9%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL-AKKKFILVGDH 59 A ++ T +GAA + +++++DEAAQ E E + L L + IL+GD Sbjct: 537 NADIILCTASGAA---EMNVERTGNVELLVVDEAAQLKECESVAALQLPGLRHAILIGDE 593 Query: 60 KQLPPTIKSKKAAA--------KAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSN 111 QLP + ++ KA SLFERLV LG + L+VQYRMHP I R P+ Sbjct: 594 FQLPAMVHNEYCNMGIMWQMCEKAKFGRSLFERLVLLGHNKHLLDVQYRMHPSISRFPNK 653 Query: 112 LFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGE 171 FY G + + F SF++ +EE +G+S +N E Sbjct: 654 EFYGGRIKDAENVKESIYQKR------FLQGNMFGSFSFINVGRGKEEFGDGHSPKNMVE 707 Query: 172 AEFVVEIVEYLLR---SGVPPEDIGVITPYNGQVELIRNILNSR-----CSLKPVEVSTV 223 V EI+ L + +GV++PY GQ+ I+ + + + V +V Sbjct: 708 VAVVSEIISNLFKVSCERRMKVSVGVVSPYKGQMRAIQEKIGDKYSSLSGQQFTLNVRSV 767 Query: 224 DSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 D FQG E+DIII+S VRSN NG++GFL + +R NV Sbjct: 768 DGFQGGEEDIIIISTVRSNSNGKVGFLNNRQRANV 802 >tr:Q7RKP6_PLAYO SEN1-related. Plasmodium yoelii yoelii. Length = 1139 Score = 218 bits (555), Expect = 9e-57 Identities = 95/266 (35%), Positives = 128/266 (48%), Gaps = 29/266 (10%) Query: 8 TCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIK 67 S S LE +F+ +IIDEA Q +E CLIP L K I+VGD KQLP T+ Sbjct: 617 VIFSTLSGSASPILENIEFEYLIIDEACQCVELSCLIPFRLKVKSIIMVGDPKQLPATVF 676 Query: 68 SKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVAR 127 S+ + G SLFERL+ + V LNVQYRM PEIC P+ FY G D S + + Sbjct: 677 SEDC-KRYGYSRSLFERLLLCKIPSVLLNVQYRMRPEICYFPNKYFYNGLIKNDESLMNK 735 Query: 128 RLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEI---VEYLLR 184 L Y + F++ G+E SY N EA F+ + ++ ++ Sbjct: 736 PLFY-------LHYLNILGCYKFINIQGIESITHH-KSYINYAEAYFIFRLIVHIQNMME 787 Query: 185 SGVPPE---------------DIGVITPYNGQVELIRNILNSRCSLKP-VEVSTVDSFQG 228 + DIG+I PY QV LIR + + EVSTVD+FQG Sbjct: 788 NKDNASPIPRCYKLSINFNLKDIGIICPYQSQVHLIRKLFENNFPDNEYPEVSTVDAFQG 847 Query: 229 REKDIIILSLVRSNRNGEIGFLRDER 254 REK+III S VRS + +L++ Sbjct: 848 REKNIIIFSCVRS-YLQAMEYLKNSN 872 >tr:Q9FJ83_ARATH Similarity to nonsense-mediated mRNA decay trans-acting factor. Arabidopsis thaliana (Mouse-ear cress). Length = 676 Score = 217 bits (554), Expect = 1e-56 Identities = 89/267 (33%), Positives = 133/267 (49%), Gaps = 19/267 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL-AKKKFILVGDH 59 A ++ T +GAA + +++++DEAAQ E E + L L + IL+GD Sbjct: 342 NADIILCTASGAA---EMNVERTGNVELLVVDEAAQLKECESVAALQLPGLRHAILIGDE 398 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLP + ++ KA SLFERLV LG + L+VQYRMHP I R P+ FY G Sbjct: 399 FQLPAMVHNEMC-EKAKFGRSLFERLVLLGHNKHLLDVQYRMHPSISRFPNKEFYGGRIK 457 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 + + F SF++ +EE +G+S +N E + EI+ Sbjct: 458 DAENVKESIYQKR------FLKGNMFDSFSFINVGRGKEEFGDGHSPKNMVEVAVISEII 511 Query: 180 EYLLR---SGVPPEDIGVITPYNGQVELIRNILNSR-----CSLKPVEVSTVDSFQGREK 231 L + +GV++PY GQ+ I+ + + + V +VD FQG E+ Sbjct: 512 SNLYKVSCERRMKVSVGVVSPYKGQMRAIQEKIGDKYSSLSGQQFTLNVRSVDGFQGGEE 571 Query: 232 DIIILSLVRSNRNGEIGFLRDERRLNV 258 DIII+S VRSN NG++GFL + +R NV Sbjct: 572 DIIIISTVRSNGNGKVGFLNNRQRANV 598 >tr:Q5K8R4_CRYNE DNA helicase, putative. Cryptococcus neoformans (Filobasidiella neoformans). Length = 952 Score = 217 bits (554), Expect = 1e-56 Identities = 99/284 (34%), Positives = 132/284 (46%), Gaps = 31/284 (10%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A VV TC A S L F +V +DEA+ A E L+PL+ ++GDHK Sbjct: 614 DADVVCTTCISAIS----ANLNSIDFPIVFLDEASMATEPLTLLPLMKGSSHVAIIGDHK 669 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLV-ELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPP I S+ A GL SLFERL+ E V + L+ QYRMHP + S FY Sbjct: 670 QLPPVIVSQDA-HAGGLSTSLFERLIHEKNVPSIMLDTQYRMHPSLAAFSSKTFYSSLLK 728 Query: 120 VDISSVARRLEYDSANPGFFPTPQF--------IVPLSFVDNSGVEEEEPEGYSYQNPGE 171 + R + P P + + E P S N GE Sbjct: 729 NGTPASERPPPETAFLIPEDPIPDPSTGELRLWGEKTNLTFLNHSHLESPVLQSMANEGE 788 Query: 172 AEFVVEIVEYLLRSG--VPPEDIGVITPYNGQVELIRNIL---------------NSRCS 214 AE +V++V LL + IG+I PY GQ++++ L Sbjct: 789 AEIIVDVVTDLLHKNPDLKGSQIGIIAPYLGQIKVLSETLFASETQDSLKRILGDERTEE 848 Query: 215 LKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 ++ VE+ TVD F+GREK++II S VRSN G IGFL D RR+NV Sbjct: 849 IQDVEIKTVDGFEGREKEVIIFSTVRSNAGGYIGFLGDWRRVNV 892 >tr:Q55M05_CRYNE Hypothetical protein. Cryptococcus neoformans var. neoformans B-3501A. Length = 952 Score = 217 bits (554), Expect = 1e-56 Identities = 99/284 (34%), Positives = 132/284 (46%), Gaps = 31/284 (10%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A VV TC A S L F +V +DEA+ A E L+PL+ ++GDHK Sbjct: 614 DADVVCTTCISAIS----ANLNSIDFPIVFLDEASMATEPLTLLPLMKGSSHVAIIGDHK 669 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLV-ELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPP I S+ A GL SLFERL+ E V + L+ QYRMHP + S FY Sbjct: 670 QLPPVIVSQDA-HAGGLSTSLFERLIHEKNVPSIMLDTQYRMHPSLAAFSSKTFYSSLLK 728 Query: 120 VDISSVARRLEYDSANPGFFPTPQF--------IVPLSFVDNSGVEEEEPEGYSYQNPGE 171 + R + P P + + E P S N GE Sbjct: 729 NGTPASERPPPETAFLIPEDPIPDPSTGELRLSGEKTNLTFLNHSHLESPVLQSMANEGE 788 Query: 172 AEFVVEIVEYLLRSG--VPPEDIGVITPYNGQVELIRNIL---------------NSRCS 214 AE +V++V LL + IG+I PY GQ++++ L Sbjct: 789 AEIIVDVVTDLLHKNPDLKGSQIGIIAPYLGQIKVLSETLFASETQDSLKRILGDERTEE 848 Query: 215 LKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 ++ VE+ TVD F+GREK++II S VRSN G IGFL D RR+NV Sbjct: 849 IQDVEIKTVDGFEGREKEVIIFSTVRSNAGGYIGFLGDWRRVNV 892 >tr:Q8IET9_PLAF7 Hypothetical protein MAL13P1.13. Plasmodium falciparum (isolate 3D7). Length = 2743 Score = 216 bits (552), Expect = 2e-56 Identities = 87/258 (33%), Positives = 113/258 (43%), Gaps = 19/258 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 + S S +E +F+ +IIDEA Q +E CLIP L K I+VGD K Sbjct: 2176 NMLFDSEIIFSTLSGSASPVIENLEFEYLIIDEACQCVELSCLIPFRLKVKNIIMVGDPK 2235 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEG---N 117 QLP T S K G SLFERL+ VS V LN+QYRM PEIC P+N FY G N Sbjct: 2236 QLPATTFSSDC-RKYGYSRSLFERLLLCNVSSVLLNIQYRMRPEICYFPNNYFYNGLIKN 2294 Query: 118 GLVDISSVARRLEYD-----------SANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 + + D + + + Sbjct: 2295 ADILSNKPFFYYFQDLDFFGCYKFINIDGIESMTYNKSYINYVEAYFIYKLVLYIKNIIS 2354 Query: 167 QNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS--LKPVEVSTVD 224 ++ + V + + + +DIG+I PY QV LIRN+ + EVSTVD Sbjct: 2355 KHQDHTKSVPNLYKLPVH--FSLKDIGIICPYQSQVHLIRNMFEESFEDKIPFPEVSTVD 2412 Query: 225 SFQGREKDIIILSLVRSN 242 +FQGREK III S VRS Sbjct: 2413 AFQGREKHIIIFSCVRSK 2430 >tr:O94387_SCHPO SPBC29A10.10c protein. Schizosaccharomyces pombe (Fission yeast). Length = 1944 Score = 216 bits (552), Expect = 2e-56 Identities = 98/266 (36%), Positives = 138/266 (51%), Gaps = 20/266 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 EA +V T +AS + L F VIIDEAAQA+E +IPL + ++VGD Sbjct: 1487 EADIVCAT--LSASGHELLLNAGLTFRTVIIDEAAQAVELSSIIPLKYGCESCVMVGDPN 1544 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVE-LGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPPT+ S K +AK G +SL+ R+ + S L++QYRM+PEI R PS FY L Sbjct: 1545 QLPPTVLS-KTSAKFGYSQSLYVRMFKQHNESACLLSIQYRMNPEISRFPSKFFYNSKLL 1603 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEE-EPEGYSYQNPGEAEFVVEI 178 + + P + + + E S N EA F++ + Sbjct: 1604 DG---------PNMSAVTSRPWHEDPQLGIYRFFNVHGTEAFSNSKSLYNVEEASFILLL 1654 Query: 179 VEYLLRSGVP---PEDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGREKD 232 E L++ + IGV+TPY QV+ +R+ + K +++ TVD FQG+EKD Sbjct: 1655 YERLIQCYLNIDFEGKIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGFQGQEKD 1714 Query: 233 IIILSLVRSNRNGEIGFLRDERRLNV 258 III S VRS+ +G IGFL+D RRLNV Sbjct: 1715 IIIFSCVRSSMSGGIGFLQDLRRLNV 1740 >tr:Q851T6_ORYSA Putative component of a tRNA splicing complex. Oryza sativa (japonica cultivar-group). Length = 788 Score = 216 bits (552), Expect = 2e-56 Identities = 98/264 (37%), Positives = 128/264 (48%), Gaps = 24/264 (9%) Query: 6 AMTCTGAASKRKSLALEK--FKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 A S S + FDVVIIDEAAQA+E LIPL+ K+ LVGD QLP Sbjct: 427 AAIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQAVEPATLIPLIHGCKQVFLVGDPVQLP 486 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS 123 T+ S A G SLF+R G V L +QYRMHPEI PS FYEG Sbjct: 487 ATVISSTAQKL-GYGTSLFKRFQAAGFPVQMLKIQYRMHPEISIFPSKEFYEG------- 538 Query: 124 SVARRLEYDSANPGFFPTPQF--IVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 LE P + P F D G E + S+ N E EF+ + Sbjct: 539 ----VLEDGEGLSKKRPWHSYSCFGPFCFFDVDGTESQPSGSGSWVNEDEVEFITLLYHQ 594 Query: 182 LLRSGVPP----EDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGREKDII 234 + P + VI+PY QV+L+++ S S + ++V+TVD FQG EK+++ Sbjct: 595 MAMR-YPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQSKEVIDVNTVDGFQGCEKEVV 653 Query: 235 ILSLVRSNRNGEIGFLRDERRLNV 258 I S VR N+ +IGF+ D RR+NV Sbjct: 654 IFSCVRCNKEQKIGFVSDFRRMNV 677 >tr:Q9FHU6_ARATH Similarity to DNA helicase. Arabidopsis thaliana (Mouse-ear cress). Length = 834 Score = 216 bits (550), Expect = 4e-56 Identities = 89/268 (33%), Positives = 128/268 (47%), Gaps = 20/268 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL-AKKKFILVGDH 59 A ++ T A+S D++++DE AQ E E + L L +L+GD Sbjct: 501 NADIIFCT---ASSVANINPARIGSVDLLVVDETAQLKECESVAALQLPGLCHALLIGDE 557 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLP + +++ KA SLFERLV +G S LNVQYRMHP I R P+ FY G Sbjct: 558 YQLPAMVHNEEC-DKAKFGRSLFERLVLIGHSKHLLNVQYRMHPSISRFPNKEFYGGRIT 616 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 + E F SF++ +EE +G+S +N E + +I+ Sbjct: 617 DAANVQESIYEKR------FLQGNMFGTFSFINVGRGKEEFGDGHSPKNMVEVAVISKII 670 Query: 180 EYLLR---SGVPPEDIGVITPYNGQVELIRNILNSRC------SLKPVEVSTVDSFQGRE 230 L + +GVI+PY GQV I+ + + L + V +VD FQG E Sbjct: 671 SNLFKVSSQRKQKMSVGVISPYKGQVRAIQERVGDKYNSLSVDQLFTLNVQSVDGFQGGE 730 Query: 231 KDIIILSLVRSNRNGEIGFLRDERRLNV 258 D+II+S VR N NG +GFL + +R NV Sbjct: 731 VDVIIISTVRCNVNGNVGFLSNRQRANV 758 >tr:Q51LV7_MAGGR Hypothetical protein. Magnaporthe grisea 70-15. Length = 2037 Score = 215 bits (549), Expect = 4e-56 Identities = 103/268 (38%), Positives = 138/268 (51%), Gaps = 22/268 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 EA V+ T +GA + +F+ VIIDEAAQ +E LIPL K ILVGD K Sbjct: 1551 EAHVLCATLSGAGHDMFKSL--QVEFETVIIDEAAQCVELSALIPLKYGASKCILVGDPK 1608 Query: 61 QLPPTIKSKKAAAKAGLEESLFERL-VELGVSVVRLNVQYRMHPEICRLPSNLFYEGN-- 117 QLPPT+ S+ AA G ++SLF R+ V L+ QYRMHPEI PS FYEG Sbjct: 1609 QLPPTVLSQSAAR-YGYDQSLFVRMQQNHPGKVHLLDCQYRMHPEISLYPSKEFYEGLLA 1667 Query: 118 GLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVE 177 D++ + ++ +D+ G P F D G++E G S N E ++ Sbjct: 1668 DGSDMAKLRQQPWHDNPLLG---------PYRFFDVEGIQERGSRGQSLVNTNEINVAIQ 1718 Query: 178 IVEYLLR----SGVPPEDIGVITPYNGQVELIRNILNSR---CSLKPVEVSTVDSFQGRE 230 I S IG+ITPY Q+ +R R L+ +E +T D+FQGRE Sbjct: 1719 IYTKFQADYASSIDMKGKIGIITPYKAQLFALRQKFQERWGEGVLEDIEFNTTDAFQGRE 1778 Query: 231 KDIIILSLVRSNRNGEIGFLRDERRLNV 258 +III S VR++ G IGF+ D RR+NV Sbjct: 1779 CEIIIFSCVRASPTGGIGFMTDIRRMNV 1806 >tr:Q7S1L9_NEUCR Hypothetical protein. Neurospora crassa. Length = 716 Score = 215 bits (549), Expect = 4e-56 Identities = 117/286 (40%), Positives = 151/286 (52%), Gaps = 39/286 (13%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 KVV T GA L+ +FDVVIIDEA+QALEA+C +PLL A KK +L GDH QL Sbjct: 390 KVVLATLHGAGGY----QLKNEEFDVVIIDEASQALEAQCWVPLLWA-KKAVLAGDHLQL 444 Query: 63 PPTIKSKKAAAKAG--------LEESLFERLVELGVSVV--RLNVQYRMHPEICRLPSNL 112 PPTIKS + A LE +LF+RL+ L + L QYRMH +I R PS+ Sbjct: 445 PPTIKSLNSRAATTKEKKEGQTLETTLFDRLLTLHGPSIKRMLTTQYRMHEKIMRFPSDE 504 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVE--------------- 157 YE LV V RL D G PL F+D G + Sbjct: 505 LYESK-LVAAEHVRERLLKDLPYEGVEANDDTTEPLIFIDTQGGDFPEKNEEELDGNGST 563 Query: 158 -----EEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSR 212 G S N EA V + V L+++GV P+DI V+TPYN Q+ ++ + Sbjct: 564 DKKKVIRSLHGESKSNEMEAALVRQHVRGLIKAGVRPDDIAVVTPYNAQLSIL---APLK 620 Query: 213 CSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 +E+ +VD FQGREK+ +I+SLVRSN GE+GFL ++RRLNV Sbjct: 621 DEFPGIELGSVDGFQGREKEAVIVSLVRSNDEGEVGFLGEKRRLNV 666 >tr:Q9HFI5_NEUCR Related to SEN1 protein. Neurospora crassa. Length = 2126 Score = 215 bits (547), Expect = 7e-56 Identities = 97/267 (36%), Positives = 136/267 (50%), Gaps = 21/267 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A+V+ T +G+ + +F+ VIIDEAAQ +E LIPL K ILVGD K Sbjct: 1538 KAQVLCATLSGSGH--EMFKNLNVEFETVIIDEAAQCVELSALIPLKYGCSKCILVGDPK 1595 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVS-VVRLNVQYRMHPEICRLPSNLFYEG--N 117 QLPPT+ S+ AA G ++SLF R+ + V L+ QYRMHPEI P FYEG Sbjct: 1596 QLPPTVLSQSAAR-YGYDQSLFVRMQKNHEKDVHLLDTQYRMHPEISSFPRAAFYEGLLQ 1654 Query: 118 GLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVE 177 D++ + + S G P F D G +E P+ S N E + ++ Sbjct: 1655 DGDDMAKSRLQPWHRSTLLG---------PYRFFDVRGSQERGPKNQSLVNEEELKVAMQ 1705 Query: 178 IVEYLLR---SGVPPEDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGREK 231 + + IG+ITPY Q+ +R+ R +E +T D+FQGRE Sbjct: 1706 LYRRFKADYGNVDLKGKIGIITPYKAQLYRLRSQFAQRFGDAITDEIEFNTTDAFQGREC 1765 Query: 232 DIIILSLVRSNRNGEIGFLRDERRLNV 258 +III S VR++ G IGF+ D RR+NV Sbjct: 1766 EIIIFSCVRASPTGGIGFMTDIRRMNV 1792 >tr:Q9S9W3_ARATH T1J24.4 protein (AT4g05540 protein). Arabidopsis thaliana (Mouse-ear cress). Length = 660 Score = 215 bits (547), Expect = 8e-56 Identities = 96/267 (35%), Positives = 133/267 (49%), Gaps = 19/267 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK-KKFILVGDH 59 A ++ T +GAA + A D++++DEAAQ E E + L L +L+GD Sbjct: 380 NAHIIFCTASGAA---EMTAERAGSIDMLVVDEAAQLKECESVAALQLQGLHHAVLIGDE 436 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLP ++S+ KA SLFERL LG LNVQYRMHP I P+ FY G Sbjct: 437 LQLPAMVQSEVC-EKAKFVRSLFERLDSLGHKKHLLNVQYRMHPSISLFPNMEFYGGK-- 493 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 + +S F SF++ +EE +G+S +N E V EI+ Sbjct: 494 ----ISDAEIVKESTYQKRFLQGNMFGSFSFINVGLGKEEFGDGHSPKNMVEIAVVSEIL 549 Query: 180 EYLLR---SGVPPEDIGVITPYNGQVELIRNILNSRC-----SLKPVEVSTVDSFQGREK 231 LL+ +GVI+PY QV I+ + + +L + V +VD FQG E+ Sbjct: 550 TNLLKVSSETKTKMSVGVISPYKAQVSAIQERIGDKYTSVSDNLFTLNVRSVDGFQGGEE 609 Query: 232 DIIILSLVRSNRNGEIGFLRDERRLNV 258 DIII+S VRSN NG IGFL + +R NV Sbjct: 610 DIIIISTVRSNCNGNIGFLSNRQRANV 636 >tr:Q5ANG6_CANAL Potential nuclear RNA processing factor. Candida albicans SC5314. Length = 2018 Score = 214 bits (546), Expect = 1e-55 Identities = 99/267 (37%), Positives = 139/267 (52%), Gaps = 21/267 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 EA+V+ T +G+A + + FD VIIDEA Q LE +IPL KK I+VGD Sbjct: 1512 EAQVLCSTLSGSAHDLVANLSVQ--FDQVIIDEACQCLELSAIIPLRYGCKKCIMVGDPN 1569 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVE-LGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPPT+ S+ AA+ E+SLF R+ + SV L+VQYRMHP I + PS+ FY + L Sbjct: 1570 QLPPTVLSQAAAS-YNYEQSLFVRMQKNHPDSVYMLDVQYRMHPMISKFPSSEFY-NSKL 1627 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIV--PLSFVDNSGVEEEEPEGYSYQNPGEAEFVVE 177 D P + P F D G E+ S N EA ++ Sbjct: 1628 KDG--------DGMLELNTRPWHKDPPLTPYRFFDILGKHEKNELTRSLFNTDEAIVALQ 1679 Query: 178 I---VEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGREK 231 + + LL IG+I+PY Q+ I+ + + L ++ +TVD FQG+EK Sbjct: 1680 LTDKLMQLLPQDKFSGKIGIISPYKEQIRKIKEVFVRKYGKPILDEIDFNTVDGFQGQEK 1739 Query: 232 DIIILSLVRSNRNGEIGFLRDERRLNV 258 +III+S VR++ G +GFL D RR+NV Sbjct: 1740 EIIIMSCVRASATGNVGFLSDVRRMNV 1766 >tr:Q8R3J3_MOUSE Dna2l protein (Fragment). Mus musculus (Mouse). Length = 800 Score = 213 bits (543), Expect = 2e-55 Identities = 98/274 (35%), Positives = 140/274 (51%), Gaps = 27/274 (9%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 +VA TC G + FD I+DEA+Q + CL PL ++F+LVGDH+QLP Sbjct: 477 IVATTCMGINHP----IFSRKTFDFCIVDEASQISQPVCLGPL-FFSRRFVLVGDHQQLP 531 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL---- 119 P + +++A A G+ ESLF+RL +VV+L VQYRM+ +I L + L Y G Sbjct: 532 PLVVNREARAL-GMSESLFKRLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSD 590 Query: 120 -------------VDISSVARRLEY-DSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S+ +Y DS+ P V D E+ E Sbjct: 591 RVANAVLALPNLKDARLSLQLYADYSDSSWLAGVLEPDNPVCFLNTDKVPAPEQ-VENGG 649 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N EA +V + +++G P DIGVI PY Q+ +I ++L VEV+TVD Sbjct: 650 VSNVTEARLIVFLTSTFIKAGCSPSDIGVIAPYRQQLRIISDLLAQSSVGM-VEVNTVDK 708 Query: 226 FQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 +QGR+K +I++S VRSN +G +G L+D RRLNV Sbjct: 709 YQGRDKSLILVSFVRSNEDGTLGELLKDWRRLNV 742 >tr:Q6ZQJ5_MOUSE MKIAA0083 protein (Fragment). Mus musculus (Mouse). Length = 1078 Score = 213 bits (543), Expect = 2e-55 Identities = 98/274 (35%), Positives = 139/274 (50%), Gaps = 27/274 (9%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 +VA TC G + FD I+DEA+Q + CL PL ++F+LVGDH+QLP Sbjct: 755 IVATTCMGINHP----IFSRKTFDFCIVDEASQISQPVCLGPL-FFSRRFVLVGDHQQLP 809 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL---- 119 P + +++A A G+ ESLF+RL +VV+L VQYRM+ +I L + L Y G Sbjct: 810 PLVVNREARAL-GMSESLFKRLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSD 868 Query: 120 -------------VDISSVARRLEY-DSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S+ +Y DS P V D E+ E Sbjct: 869 RVANAVLALPNLKDARLSLQLYADYSDSPWLAGVLEPDNPVCFLNTDKVPAPEQ-VENGG 927 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N EA +V + +++G P DIGVI PY Q+ +I ++L VEV+TVD Sbjct: 928 VSNVTEARLIVFLTSTFIKAGCSPSDIGVIAPYRQQLRIISDLLARSSVGM-VEVNTVDK 986 Query: 226 FQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 +QGR+K +I++S VRSN +G +G L+D RRLNV Sbjct: 987 YQGRDKSLILVSFVRSNEDGTLGELLKDWRRLNV 1020 >tr:Q86D36_DROME LD18775p. Drosophila melanogaster (Fruit fly). Length = 1054 Score = 213 bits (542), Expect = 2e-55 Identities = 90/305 (29%), Positives = 133/305 (43%), Gaps = 56/305 (18%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 + +V +TC G ++ +FD I+DEA Q L+ L PL+ KF+LVGD + Sbjct: 744 QPSIVGVTCLGCGHPL----FQRRQFDYCIVDEATQVLQPTVLRPLI-HCSKFVLVGDPE 798 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN--- 117 QLPP ++SK+A + G +E+LF+RL + V L++QYRM+ I RL + L Y G+ Sbjct: 799 QLPPIVRSKEA-RQRGADETLFQRLDSEKATAV-LSLQYRMNKTITRLANELTYGGDLKC 856 Query: 118 -------------------------------------GLVDISSVARRLEYDSANPGFFP 140 D + Y S Sbjct: 857 ASDEVSGARFEVELLNEAPRWVQRALTTHLEQAVTLINTGDCLERCQEFVYASQRLVDTC 916 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 + D + Y N EA V+ ++ YLL+SG IGVI PY Sbjct: 917 SSIEQSFSEDKDEIRKLTSKKRVSKYTNYCEAGIVMHLLRYLLKSGYEASRIGVIAPYRA 976 Query: 201 QVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSN-------RNGEIGFLRDE 253 QVEL + + + +E +TVD FQGR+K++II S ++ R+ E L D+ Sbjct: 977 QVELFKKL--ASKLDTDLECNTVDQFQGRDKNLIIYSCSKTGGDFSDMERSREAEILEDQ 1034 Query: 254 RRLNV 258 RRL V Sbjct: 1035 RRLTV 1039 >tr:Q8BSZ0_MOUSE Mus musculus 18 days pregnant adult female placenta and extra embryonic tissue cDNA, RIKEN full-length enriched library, clone:3830431B20 product:hypothetical P-loop containing nucleotide triphosphate hydrolases structure containing protein, full insert sequence. Mus musculus (Mouse). Length = 1062 Score = 213 bits (542), Expect = 3e-55 Identities = 98/274 (35%), Positives = 139/274 (50%), Gaps = 27/274 (9%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 +VA TC G + FD I+DEA+Q + CL PL ++F+LVGDH+QLP Sbjct: 739 IVATTCMGINHP----IFSRKTFDFCIVDEASQISQPVCLGPL-FFSRRFVLVGDHQQLP 793 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL---- 119 P + +++A A G+ ESLF+RL +VV+L VQYRM+ +I L + L Y G Sbjct: 794 PLVVNREARAL-GMSESLFKRLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSD 852 Query: 120 -------------VDISSVARRLEY-DSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S+ +Y DS P V D E+ E Sbjct: 853 RVANAVLALPNLKDARLSLQLYADYSDSPWLAGVLEPDNPVCFLNTDKVPAPEQ-VENGG 911 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N EA +V + +++G P DIGVI PY Q+ +I ++L VEV+TVD Sbjct: 912 VSNVTEARLIVFLTSTFIKAGCSPSDIGVIAPYRQQLRIISDLLARSSVGM-VEVNTVDK 970 Query: 226 FQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 +QGR+K +I++S VRSN +G +G L+D RRLNV Sbjct: 971 YQGRDKSLILVSFVRSNEDGTLGELLKDWRRLNV 1004 >tr:Q8IRL9_DROME CG2990-PB, isoform B. Drosophila melanogaster (Fruit fly). Length = 1100 Score = 213 bits (542), Expect = 3e-55 Identities = 90/305 (29%), Positives = 133/305 (43%), Gaps = 56/305 (18%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 + +V +TC G ++ +FD I+DEA Q L+ L PL+ KF+LVGD + Sbjct: 744 QPSIVGVTCLGCGHPL----FQRRQFDYCIVDEATQVLQPTVLRPLI-HCSKFVLVGDPE 798 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN--- 117 QLPP ++SK+A + G +E+LF+RL + V L++QYRM+ I RL + L Y G+ Sbjct: 799 QLPPIVRSKEA-RQRGADETLFQRLDSEKATAV-LSLQYRMNKTITRLANELTYGGDLKC 856 Query: 118 -------------------------------------GLVDISSVARRLEYDSANPGFFP 140 D + Y S Sbjct: 857 ASDEVSGARFEVELLNEAPRWVQRALTTHLEQAVTLINTGDCLERCQEFVYASQRLVDTC 916 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 + D + Y N EA V+ ++ YLL+SG IGVI PY Sbjct: 917 SSIEQSFSEDKDEIRKLTSKKRVSKYTNYCEAGIVMHLLRYLLKSGYEASRIGVIAPYRA 976 Query: 201 QVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSN-------RNGEIGFLRDE 253 QVEL + + + +E +TVD FQGR+K++II S ++ R+ E L D+ Sbjct: 977 QVELFKKL--ASKLDTDLECNTVDQFQGRDKNLIIYSCSKTGGDFSDMERSREAEILEDQ 1034 Query: 254 RRLNV 258 RRL V Sbjct: 1035 RRLTV 1039 >tr:Q9W2Z4_DROME CG2990-PA, isoform A. Drosophila melanogaster (Fruit fly). Length = 1119 Score = 213 bits (542), Expect = 3e-55 Identities = 90/305 (29%), Positives = 133/305 (43%), Gaps = 56/305 (18%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 + +V +TC G ++ +FD I+DEA Q L+ L PL+ KF+LVGD + Sbjct: 763 QPSIVGVTCLGCGHPL----FQRRQFDYCIVDEATQVLQPTVLRPLI-HCSKFVLVGDPE 817 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN--- 117 QLPP ++SK+A + G +E+LF+RL + V L++QYRM+ I RL + L Y G+ Sbjct: 818 QLPPIVRSKEA-RQRGADETLFQRLDSEKATAV-LSLQYRMNKTITRLANELTYGGDLKC 875 Query: 118 -------------------------------------GLVDISSVARRLEYDSANPGFFP 140 D + Y S Sbjct: 876 ASDEVSGARFEVELLNEAPRWVQRALTTHLEQAVTLINTGDCLERCQEFVYASQRLVDTC 935 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 + D + Y N EA V+ ++ YLL+SG IGVI PY Sbjct: 936 SSIEQSFSEDKDEIRKLTSKKRVSKYTNYCEAGIVMHLLRYLLKSGYEASRIGVIAPYRA 995 Query: 201 QVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSN-------RNGEIGFLRDE 253 QVEL + + + +E +TVD FQGR+K++II S ++ R+ E L D+ Sbjct: 996 QVELFKKL--ASKLDTDLECNTVDQFQGRDKNLIIYSCSKTGGDFSDMERSREAEILEDQ 1053 Query: 254 RRLNV 258 RRL V Sbjct: 1054 RRLTV 1058 >tr:Q6BK27_DEBHA Similar to CA3215|CaHCS1 Candida albicans CaHCS1 putative DNA helicase A. Debaryomyces hansenii (Yeast) (Torulaspora hansenii). Length = 755 Score = 212 bits (541), Expect = 4e-55 Identities = 101/257 (39%), Positives = 137/257 (53%), Gaps = 25/257 (9%) Query: 26 FDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAK--------- 74 FD +IIDE +Q+LE +C IPL+ L K+ ++ GD+ QLPPT+KSK Sbjct: 453 FDTIIIDEVSQSLEPQCWIPLVNHLGCKRLVIAGDNMQLPPTVKSKDDLDALMRKLNIKD 512 Query: 75 --AGLEESLFERLVELGVSV---VRLNVQYRMHPEICRLPSNLFYEGN--------GLVD 121 A LE +LF+RL+ L+ QYRM+ +I R PSN Y+GN L Sbjct: 513 GVADLELTLFDRLIRDHNGSQFKKLLDTQYRMNEDIMRFPSNELYDGNLKAHDSVRSLTL 572 Query: 122 ISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 + + D++ P + Q + S N E V + ++ Sbjct: 573 EDLPSVKPTDDTSIPCVWYDTQGGNFPERASDDDSRAMAESTGSKYNDMEVLVVEQHLQN 632 Query: 182 LLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRS 241 LL++G+ P DIGVI+PYN Q L++ L R + +EVSTVD FQGREK+ II+SLVRS Sbjct: 633 LLQAGITPADIGVISPYNAQASLLKKTLQLR-QIDGIEVSTVDGFQGREKEAIIISLVRS 691 Query: 242 NRNGEIGFLRDERRLNV 258 N N EIGFL D RRLNV Sbjct: 692 NPNREIGFLADRRRLNV 708 >tr:Q61ZG1_CAEBR Hypothetical protein CBG03123. Caenorhabditis briggsae. Length = 1071 Score = 212 bits (540), Expect = 4e-55 Identities = 94/273 (34%), Positives = 135/273 (49%), Gaps = 21/273 (7%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 V + + L FDVVIIDEA+ LE L L + KKF+LVGD +Q Sbjct: 765 KTTVPIVACTCHHVPRELLFSYRHFDVVIIDEASMVLEPLLLPVLATS-KKFVLVGDCQQ 823 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFY-----EG 116 L P + S+KA + ++ + +VV L QYRM+ E+ L S LFY G Sbjct: 824 LTPLVVSRKAKQEGASISTMEKLQKNHPTAVVSLTSQYRMNRELSALSSKLFYENRLICG 883 Query: 117 NGLVDISSVARRLEYD----------SANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 N V SS+ R Y A G + N ++ E E Sbjct: 884 NEAVSRSSLDRSGSYAVPIDLDDHIRKALSGDIADSCVFLDTQSPINHSMQCENGESCGM 943 Query: 167 QNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSF 226 N GEA+ + E+ + + SGV P +IGV++ Y QV+ IRN++ + + +EV+T+DS+ Sbjct: 944 NNDGEAKIISELCQRFIESGVKPNEIGVMSAYRKQVDHIRNVVKN----EDLEVNTIDSY 999 Query: 227 QGREKDIIILSLVRS-NRNGEIGFLRDERRLNV 258 QGREK +II SL + N + + LRDERR+NV Sbjct: 1000 QGREKRVIIWSLTWTDNSDKKSELLRDERRINV 1032 >tr:Q86AS0_DICDI Similar to Neurospora crassa. Related to SEN1 protein (Hypothetical protein). Dictyostelium discoideum (Slime mold). Length = 967 Score = 211 bits (539), Expect = 6e-55 Identities = 105/266 (39%), Positives = 132/266 (49%), Gaps = 26/266 (9%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 EA +VA T + + L FD+VIIDEAAQA+E LIP+ KK +LVGD K Sbjct: 562 EADIVATTLSFSG--ASLLTKMAGGFDIVIIDEAAQAVETSTLIPIQHGCKKVVLVGDPK 619 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYE--GNG 118 QLP TI S A K ++SLF+RL E S L QYRMH I PS FY+ Sbjct: 620 QLPATIIS-PLAIKYKYDQSLFQRLQEKN-SPHMLTTQYRMHSLIRAFPSRHFYQDLLLD 677 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEI 178 +I S A + F PL F D S E +P G S N E + + + Sbjct: 678 GPNIPSRATHY----------HSNPFFGPLVFYDLSWSTETKPGGGSVFNEHECKMAMYL 727 Query: 179 VEYLLRSGVPPED----IGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDII 234 L P ED IG+I+PY QV +R I + + + TVD FQGRE++II Sbjct: 728 F-QLFTKVYPDEDFASRIGIISPYRQQVLALREIFKN---YPGISIDTVDGFQGREREII 783 Query: 235 ILSLVRSNRNG--EIGFLRDERRLNV 258 I S VR+ IGFL D RR+NV Sbjct: 784 IFSCVRAPVEEGAGIGFLSDVRRMNV 809 >tr:Q7LIE9_YEAST Sen1p (Fragment). Saccharomyces cerevisiae (Baker's yeast). Length = 757 Score = 211 bits (537), Expect = 1e-54 Identities = 99/267 (37%), Positives = 138/267 (51%), Gaps = 24/267 (8%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 ++ T +G+A LA KFD VIIDEA Q E +IPL K+ I+VGD QL Sbjct: 89 DIICSTLSGSAHD--VLATMGIKFDTVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQL 146 Query: 63 PPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDI 122 PPT+ S AA+ +SLF R+ E S L+VQYRMHP I + PS+ FY+G L D Sbjct: 147 PPTVLS-GAASNFKYNQSLFVRM-EKNSSPYLLDVQYRMHPSISKFPSSEFYQGR-LKDG 203 Query: 123 SSVARRLEYDSANPGFFPTPQFIV--PLSFVD-NSGVEEEEPEGYSYQNPGEAEFVVEIV 179 P Q P F D SG +E+ + SY N E +E+V Sbjct: 204 P--------GMDILNKRPWHQLEPLAPYKFFDIISGRQEQNAKTMSYTNMEEIRVAIELV 255 Query: 180 EYLLRSGVPP----EDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGREKD 232 +YL R IG+I+PY Q++ +R K ++ +T+D FQG+EK+ Sbjct: 256 DYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKE 315 Query: 233 IIILSLVRSNRNG-EIGFLRDERRLNV 258 II++S VR++ +GFL+D RR+NV Sbjct: 316 IILISCVRADDTKSSVGFLKDFRRMNV 342 >tr:Q6CWA6_KLULA Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y- 1140 of Kluyveromyces lactis. Kluyveromyces lactis (Yeast). Length = 1997 Score = 210 bits (536), Expect = 2e-54 Identities = 103/267 (38%), Positives = 144/267 (53%), Gaps = 20/267 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 E+ ++ T +G+A LA KFD +IIDEA Q E +IPL K+ I+VGD Sbjct: 1555 ESDIICSTLSGSAHD--VLASLGVKFDTIIIDEACQCTELSSIIPLRYGGKRCIMVGDPN 1612 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QLPPT+ S AA+ +SLF R+ S L+VQYRMHP I + PS FY+G L Sbjct: 1613 QLPPTVLS-GAASDMKYNQSLFVRMQ-KNCSPYLLDVQYRMHPAISKFPSLEFYKGK-LQ 1669 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 D SSV D F +F ++ G +++ + SY NP E + +E+VE Sbjct: 1670 DGSSVQEVNTRDWHKKYPFGPYKFFDIVT-----GKQKQNTKTMSYTNPEETKVAIELVE 1724 Query: 181 YLL---RSGVP-PEDIGVITPYNGQVELIRNILNSRCSLKPVE----VSTVDSFQGREKD 232 LL S IG+I+PY Q++ +RN R + +T+D FQG+EKD Sbjct: 1725 NLLATYESKYDFTNRIGIISPYREQMQNMRNQFR-RYFGDQIRSYIDFNTIDGFQGQEKD 1783 Query: 233 IIILSLVRSNRNGE-IGFLRDERRLNV 258 III+S VR++ N +GFL+D RR+NV Sbjct: 1784 IIIISCVRADDNSTSVGFLKDFRRMNV 1810 >tr:Q6YVI6_ORYSA Putative DNA helicase. Oryza sativa (japonica cultivar-group). Length = 794 Score = 210 bits (535), Expect = 2e-54 Identities = 110/267 (41%), Positives = 142/267 (53%), Gaps = 14/267 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 EA+VV T TGAA FD+VIIDEA QA+E C IP+ L K+ IL GDH Sbjct: 471 EAQVVLSTNTGAADPLIRRTCC---FDLVIIDEAGQAIEPSCWIPI-LQGKRCILAGDHC 526 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLFYEG-- 116 QL P I S+KA GL +SL ER L G+ RL VQ+RM+ I S Y G Sbjct: 527 QLAPVILSRKA-LDGGLGKSLLERASSLHNGLLTTRLTVQHRMNDSIASWASKEMYHGLL 585 Query: 117 --NGLVDISSVARRLEYDSANPGFFPTP--QFIVPLSFVDNSGVEEEEPEGY-SYQNPGE 171 + V ++A + P +P +D E+ + G S+ N GE Sbjct: 586 KSSHSVASQTLADSPVVKATWITRCPLLLLDTRMPYGALDTGCGEQIDLSGTGSFYNDGE 645 Query: 172 AEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREK 231 A+ V + V L+ GV P I V +PY QV+L+R L L VEVST+DSFQGRE Sbjct: 646 ADIVTQHVLNLVHCGVSPTAIAVQSPYIAQVQLLRERLEEYPGLSGVEVSTIDSFQGREA 705 Query: 232 DIIILSLVRSNRNGEIGFLRDERRLNV 258 D +++S+VRSN G +GFL D RR+NV Sbjct: 706 DAVVISMVRSNPLGAVGFLGDSRRMNV 732 >tr:Q6BGI0_PARTE TRNA-splicing endonuclease positive effector, putative. Paramecium tetraurelia. Length = 1124 Score = 210 bits (535), Expect = 2e-54 Identities = 93/256 (36%), Positives = 139/256 (54%), Gaps = 17/256 (6%) Query: 5 VAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPP 64 + + A K F+++I+DEAAQ E IPL L +K IL+GD KQLP Sbjct: 705 ILCSTLSTAGTDKLSKFID-SFELLIVDEAAQCTEPSNNIPLRLGMRKMILIGDPKQLPA 763 Query: 65 TIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISS 124 T S + SLFER+++ L++QYRMHP+I PS FY+ L+D S Sbjct: 764 TTFSSVSQI-THYNRSLFERILDNDFKPFFLDMQYRMHPQIREFPSLNFYDNK-LIDHFS 821 Query: 125 VARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLR 184 V RL P F + F+D EE + S+QN E +VE+++ ++ Sbjct: 822 VYERL---------IPNNFFNQRVLFIDVES--EETKDEKSFQNQTECNMIVEVLKN-IK 869 Query: 185 SGVPPEDIGVITPYNGQVELIRNILNSRC--SLKPVEVSTVDSFQGREKDIIILSLVRSN 242 + P + +GVI Y QV LI+ + + + ++++TVDSFQG+E+D+I+ S VRS+ Sbjct: 870 NAYPSQSLGVICAYKAQVRLIKLEIKRQLGDLMDEIQINTVDSFQGQERDVILFSCVRSS 929 Query: 243 RNGEIGFLRDERRLNV 258 +G IGFL+D RR+NV Sbjct: 930 SSGNIGFLQDGRRVNV 945 >tr:Q9SHX6_ARATH F1E22.16. Arabidopsis thaliana (Mouse-ear cress). Length = 1075 Score = 210 bits (534), Expect = 2e-54 Identities = 104/283 (36%), Positives = 137/283 (48%), Gaps = 42/283 (14%) Query: 7 MTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL-AKKKFILVGDHKQLPPT 65 T + +A S +++IDEAAQ E E IPL L + IL+GD KQLP Sbjct: 539 CTASSSARLHMSSP-----IQLLVIDEAAQLKECESAIPLQLRGLQHAILIGDEKQLPAM 593 Query: 66 IKSK------------------------KAAAKAGLEESLFERLVELGVSVVRLNVQYRM 101 IKS + A++A L SLFERLV LG + LN+QYRM Sbjct: 594 IKSNVGSLILTNYTHIHSLLFAYLISYVQIASEADLGRSLFERLVLLGHNKQLLNMQYRM 653 Query: 102 HPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEP 161 HP I P+ FY+ L S R E F + P SF++ + E+ Sbjct: 654 HPSISIFPNREFYDMKILDAPSVRLRSYEK------KFLPEKMYGPYSFINIAYGREQFG 707 Query: 162 EGYSYQNPGEAEFVVEIVEYLLRSGVPPE---DIGVITPYNGQVELIRNILNSRCSLKP- 217 EGYS +N E V EIV L +GVI+PY QV I+ + + + + Sbjct: 708 EGYSSKNLVEVSVVAEIVSKLYSVSRKTGRTISVGVISPYKAQVFAIQERIGEKYNTEGT 767 Query: 218 --VEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 V V +VD FQG E+DIII+S VRSN NG IGFL +++R NV Sbjct: 768 FTVSVRSVDGFQGGEEDIIIISTVRSNGNGAIGFLSNQQRTNV 810 >tr:Q9SZW3_ARATH Hypothetical protein F6G3.130 (Hypothetical protein AT4g30100). Arabidopsis thaliana (Mouse-ear cress). Length = 1311 Score = 210 bits (534), Expect = 3e-54 Identities = 99/261 (37%), Positives = 139/261 (53%), Gaps = 17/261 (6%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 + T ++S RK + FD+V+IDEAAQA E L PL L + +LVGD +QLP T Sbjct: 918 IVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLALGAARCVLVGDPQQLPAT 977 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSV 125 + SK A SLFER G + L VQYRMHP+I PS FY+G L D SV Sbjct: 978 VISKAAGTL-LYSRSLFERFQLAGCPTLLLTVQYRMHPQIRDFPSRYFYQGR-LTDSESV 1035 Query: 126 ARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY-SYQNPGEAEFVVEIVEYLLR 184 + + + P F D S E G SY+N EA F V + +L R Sbjct: 1036 STAPDEIY------YKDSVLKPYLFFDISHGRESHRGGSVSYENIDEARFCVGVYLHLQR 1089 Query: 185 ----SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVE---VSTVDSFQGREKDIIILS 237 G +GVITPY Q++ ++ + S ++ ++TVD+FQG+E+D+II+S Sbjct: 1090 TLKSLGGGKVSVGVITPYKLQLKCLKIEFGNALSQDELQEIYINTVDAFQGQERDVIIMS 1149 Query: 238 LVRSNRNGEIGFLRDERRLNV 258 VR++ +G +GF+ D RR+NV Sbjct: 1150 CVRASNHG-VGFVADIRRMNV 1169 >tr:Q528Z3_MAGGR Hypothetical protein. Magnaporthe grisea 70-15. Length = 1689 Score = 209 bits (532), Expect = 4e-54 Identities = 102/297 (34%), Positives = 140/297 (47%), Gaps = 48/297 (16%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 VVA TC G + + FD I+DEA+Q CL P+ +A + F+LVGDH QLP Sbjct: 1259 VVATTCLGISHPL----FNERTFDYCIVDEASQITLPICLGPIRMA-RTFVLVGDHNQLP 1313 Query: 64 PTIKSKKAAAKAGLEESLFERL-VELGVSVVRLNVQYRMHPEICRLPSNLFYEG------ 116 P +++++A K GL+ SLF+ L SVV L QYRM ++ L + L YEG Sbjct: 1314 PLVQNEEA-RKGGLDVSLFKLLSDTHPDSVVNLEHQYRMCEDVMALSNELIYEGHLKCGT 1372 Query: 117 NGLVDISSVARRLEY-------------------------------DSANPGFFPTPQFI 145 L E +S P Sbjct: 1373 EELRLRKLDIPFPEALSRHHYDASSFMSLSRSQPVFSLPKSFCTDGNSCWLRHLVDPDTR 1432 Query: 146 VPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELI 205 V D EE +G NP EA+ VV++VE L+ GVP +IGV+T Y Q+ L+ Sbjct: 1433 VAFVNTDALPDSREEAKGNRIVNPVEAQLVVQLVESLMTLGVPANEIGVMTHYRSQLALL 1492 Query: 206 RNIL---NSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 ++ L + VE+ T D FQGR+K++++LSLVRSN IG LRD RR+NV Sbjct: 1493 KHKLLRGKNTGDATAVEMHTADRFQGRDKEVVVLSLVRSNEACHIGDLLRDWRRINV 1549 >tr:Q7XUD5_ORYSA OSJNBa0088A01.10 protein. Oryza sativa (japonica cultivar-group). Length = 890 Score = 208 bits (531), Expect = 5e-54 Identities = 102/263 (38%), Positives = 138/263 (52%), Gaps = 20/263 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL-AKKKFILVGDH 59 A ++ T +G+A L + K D+++IDEAAQ E E LIPL + K +L+GD Sbjct: 550 SASLIFCTVSGSA------KLYEQKMDLLLIDEAAQLKECESLIPLQVSGLKHAVLIGDE 603 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLP T+KS KAA A L SLFERL LG LN+QYRMHP I P+ FY+ L Sbjct: 604 CQLPATVKS-KAADGALLGRSLFERLTLLGHQKHLLNMQYRMHPSISIFPNFSFYDKKIL 662 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 + R E F P SF++ E+ +N E + +I+ Sbjct: 663 DGPNVTHVRHER------SFLQGAMFGPYSFINIENGREDPGRNK--RNMAEVAAIKKIL 714 Query: 180 EYLLRSGVPPE---DIGVITPYNGQVELIRNILNSRCSLK-PVEVSTVDSFQGREKDIII 235 L ++ V +G+I PY QVE I++ +++ V V++VD FQG E+DIII Sbjct: 715 HNLCKACVGTGEGVSVGIICPYAAQVEAIQSGIDANAVRPLDVRVNSVDGFQGSEEDIII 774 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VRSN G IGFL + RR NV Sbjct: 775 LSTVRSNSTGSIGFLSNRRRANV 797 >tr:O64476_ARATH Putative DNA2-NAM7 helicase family protein. Arabidopsis thaliana (Mouse-ear cress). Length = 1090 Score = 208 bits (531), Expect = 6e-54 Identities = 98/263 (37%), Positives = 139/263 (52%), Gaps = 21/263 (7%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 + T ++S RK + FD+V+IDEAAQA E L PL L + +LVGD +QLP T Sbjct: 755 IVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLALGAARCVLVGDPQQLPAT 814 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEG--NGLVDIS 123 + SK A SLFER G + L VQYRMHP+I PS FY+G IS Sbjct: 815 VISKAAGTL-LYSRSLFERFQLAGCPTLLLTVQYRMHPQIRDFPSRYFYQGRLKDSESIS 873 Query: 124 SVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY-SYQNPGEAEFVVEIVEYL 182 S + Y + P F + S E G SY+N EA F V + +L Sbjct: 874 SAPDEIYYKDP---------VLRPYLFFNISHGRESHRGGSVSYENVDEARFCVGVYMHL 924 Query: 183 LR----SGVPPEDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGREKDIII 235 + G +GVITPY Q++ +++ + LK + ++TVD+FQG+E+D+II Sbjct: 925 QKTLKSLGAGKVSVGVITPYKLQLKCLKHEFGNALGQDELKEIYINTVDAFQGQERDVII 984 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 +S VR++ +G +GF+ D RR+NV Sbjct: 985 MSCVRASGHG-VGFVSDIRRMNV 1006 >tr:Q6ZU11_HUMAN Hypothetical protein FLJ44066. Homo sapiens (Human). Length = 926 Score = 208 bits (529), Expect = 9e-54 Identities = 94/263 (35%), Positives = 140/263 (53%), Gaps = 24/263 (9%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLA-KKKFILVGDH 59 + +VV +TC + KF VV++DE +Q E L+P+ +K ILVGD Sbjct: 604 QVRVVGVTCAAC----PFPCMNDLKFPVVVLDECSQITEPASLLPIARFECEKLILVGDP 659 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 KQLPPTI+ AA + GLE++LF+RL +G + L QYR HP I + ++LFY+G L Sbjct: 660 KQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPILLRTQYRCHPAISAIANDLFYKG-AL 718 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 ++ + R P N E+ S+ N EA F ++++ Sbjct: 719 MNGVTEIERSPLLEWL-----------PTLCFYNVKGLEQIERDNSFHNVAEATFTLKLI 767 Query: 180 EYLLRSGVPPEDIGVITPYNGQV----ELIRNILNSRCSLKPVEVSTVDSFQGREKDIII 235 + L+ SG+ IGVIT Y Q+ L+ + +K V+VSTVD+FQG EK+III Sbjct: 768 QSLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIII 827 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VR+ + +GF+ E+R+NV Sbjct: 828 LSCVRTRQ---VGFIDSEKRMNV 847 >tr:Q9FGC2_ARATH DNA helicase-like. Arabidopsis thaliana (Mouse-ear cress). Length = 750 Score = 207 bits (528), Expect = 1e-53 Identities = 110/268 (41%), Positives = 139/268 (51%), Gaps = 16/268 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A+VV T GAA LE FD+V+IDEA Q++E C IP+ L K+ IL GD Sbjct: 429 NAQVVFATNIGAADPL-IRRLE--TFDLVVIDEAGQSIEPSCWIPI-LQGKRCILSGDPC 484 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLFYEGNG 118 QL P + S+KA + GL SL ER L GV +L QYRM+ I S Y G Sbjct: 485 QLAPVVLSRKA-LEGGLGVSLLERAASLHDGVLATKLTTQYRMNDVIAGWASKEMYGGW- 542 Query: 119 LVDISSVARRLEYDSANPGFF-------PTPQFIVPLSFVDNSGVEEEEPEGY-SYQNPG 170 L SVA L DS +P + E +P G S N G Sbjct: 543 LKSAPSVASHLLIDSPFVKATWITQCPLVLLDTRMPYGSLSVGCEERLDPAGTGSLYNEG 602 Query: 171 EAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGRE 230 EA+ VV V L+ +GV P I V +PY QV+L+R L+ VEV+T+DSFQGRE Sbjct: 603 EADIVVNHVISLIYAGVSPMAIAVQSPYVAQVQLLRERLDDFPVADGVEVATIDSFQGRE 662 Query: 231 KDIIILSLVRSNRNGEIGFLRDERRLNV 258 D +I+S+VRSN G +GFL D RR+NV Sbjct: 663 ADAVIISMVRSNNLGAVGFLGDSRRMNV 690 >tr:Q75CL7_ASHGO ACL098Cp. Ashbya gossypii (Yeast) (Eremothecium gossypii). Length = 657 Score = 207 bits (528), Expect = 1e-53 Identities = 104/274 (37%), Positives = 140/274 (51%), Gaps = 22/274 (8%) Query: 2 AKVVAMT--CTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK----KFIL 55 A+VV T + A S FD VIIDE +Q+LE +C IPL+ + K ++ Sbjct: 341 ARVVVCTLHGSSAYSLCHMYDKCARLFDTVIIDEVSQSLEPQCWIPLISHYQSNISKLVI 400 Query: 56 VGDHKQLPPTIKSKKAAAKAG-LEESLFERLVELGVSV--VRLNVQYRMHPEICRLPSNL 112 GD+KQLPPT+K++ A L ++F++L L+VQYRM+ I S Sbjct: 401 AGDNKQLPPTVKTEDDAHVRQVLSTTIFDKLERHYGDQFKKLLDVQYRMNERIMAFASES 460 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGV---EEEEPEGY----- 164 Y G + + PG + PL + D G E EE G Sbjct: 461 LYAGK---LKAWQGVVGLASADLPGVDESDDTSAPLVWYDTQGDDFPEAEEAAGGPALMA 517 Query: 165 SYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVD 224 S N EA V+ + L VP E IGVI+PYN QV L++ I+ VE+S+VD Sbjct: 518 SKFNENEAYLVLHHISQLRACNVPQEAIGVISPYNAQVALLKKII--HGQHPLVEISSVD 575 Query: 225 SFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 FQGREK+ I+LSLVRSN + ++GFLRDERRLNV Sbjct: 576 GFQGREKECIVLSLVRSNDSFDVGFLRDERRLNV 609 >tr:Q5TC49_HUMAN DNA2 DNA replication helicase 2-like (Yeast). Homo sapiens (Human). Length = 1040 Score = 207 bits (527), Expect = 2e-53 Identities = 99/275 (36%), Positives = 147/275 (53%), Gaps = 30/275 (10%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 +VA TC G + FD I+DEA+Q + CL PL ++F+LVGDH+QLP Sbjct: 738 IVATTCMGINHP----IFSRKIFDFCIVDEASQISQPICLGPL-FFSRRFVLVGDHQQLP 792 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS 123 P + +++A A G+ ESLF+RL + +VV+L VQYRM+ +I L + L YEG Sbjct: 793 PLVLNREARAL-GMSESLFKRLEQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSD 851 Query: 124 SVARR-------------------LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY 164 VA + G F + L+ E+ E G Sbjct: 852 KVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGV 911 Query: 165 SYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVD 224 S N EA+ +V + +++G P DIG+I PY Q+++I ++L S+ VEV+TVD Sbjct: 912 S--NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLLAR--SIGMVEVNTVD 967 Query: 225 SFQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 +QGR+K I+++S VRSN++G +G L+D RRLNV Sbjct: 968 KYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNV 1002 >tr:Q55J08_CRYNE Hypothetical protein. Cryptococcus neoformans var. neoformans B-3501A. Length = 2245 Score = 207 bits (527), Expect = 2e-53 Identities = 104/267 (38%), Positives = 137/267 (51%), Gaps = 23/267 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A ++ T +GA L F+ VIIDEAAQA+E CLIPL K+ I+VGD Sbjct: 1703 DADIICATLSGAGHD----TLAAHTFETVIIDEAAQAIEMSCLIPLKYGCKRCIMVGDPN 1758 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVS-VVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPPT S A +SLF R+ + S V L++QYRMHP I LPS +FY G L Sbjct: 1759 QLPPTTFSTNAEKL-QYNKSLFVRMTKRDASHVQLLSIQYRMHPFISELPSKVFYHGQ-L 1816 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 D S+A++ Q + + + E G S +NP EA VE+ Sbjct: 1817 KDGPSMAKKTAAI--------WHQRNIFGPYRFFNVEGTEMKTGTSTKNPAEALAAVELY 1868 Query: 180 EYL---LRSGVP-PEDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGREKD 232 L + V +GVI+ Y Q+ ++ L+ VE +TVD FQG+EKD Sbjct: 1869 RRLSADFGTRVNLAMRVGVISMYREQLWELKRKFTEAFGSAILELVEFNTVDGFQGQEKD 1928 Query: 233 IIILSLVRSNRNGE-IGFLRDERRLNV 258 IIILS VRS N IGFL+D RR+NV Sbjct: 1929 IIILSCVRSGPNLSHIGFLKDTRRMNV 1955 >tr:Q6CMS3_KLULA Similar to sp|P34243 Saccharomyces cerevisiae YKL017c DIP1 DNA helicase A. Kluyveromyces lactis (Yeast). Length = 681 Score = 207 bits (527), Expect = 2e-53 Identities = 109/276 (39%), Positives = 151/276 (54%), Gaps = 23/276 (8%) Query: 3 KVVAMTCTGAAS--KRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK----KFILV 56 K+V T G++S + L+ F+ +IIDE +Q+LE +C IPL+ K + I+ Sbjct: 357 KIVVCTLHGSSSRELLSAYDLQSKLFNTLIIDEVSQSLEPQCWIPLISHLKSDMQRLIIA 416 Query: 57 GDHKQLPPTIKSKKAAA-KAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLF 113 GD KQLPPTIK++ K L ++F+RL++ LNVQYRM+ EI + SN Sbjct: 417 GDDKQLPPTIKTEDNDKVKRLLSTTVFDRLLQHYGNEFKYLLNVQYRMNEEIMQFSSNEL 476 Query: 114 YEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEG---------- 163 Y+G L SVA++L D F + E E Sbjct: 477 YDGK-LKADDSVAKQLLADLPGVESNDNTTFPCIWLDTEGDDFPERSDENDNDADDKFHL 535 Query: 164 -YSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVST 222 S N EA + VE L+++GV E IGVI+PYN QV L++ +++ + +E+ST Sbjct: 536 VSSKYNENEAYLALYHVEQLIKAGVTEESIGVISPYNSQVSLLKKLIHEKHQA--IEIST 593 Query: 223 VDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 VD FQGREK+ IILSLVRSN N E+GFL+DERRLNV Sbjct: 594 VDGFQGREKECIILSLVRSNENFEVGFLKDERRLNV 629 >tr:Q5KCP4_CRYNE Hypothetical protein. Cryptococcus neoformans (Filobasidiella neoformans). Length = 2245 Score = 206 bits (526), Expect = 2e-53 Identities = 103/267 (38%), Positives = 137/267 (51%), Gaps = 23/267 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A ++ T +GA L F+ VIIDEAAQA+E CLIPL K+ ++VGD Sbjct: 1703 DADIICATLSGAGHD----TLAAHTFETVIIDEAAQAIEMSCLIPLKYGCKRCVMVGDPN 1758 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVS-VVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPPT S A +SLF R+ + S V L++QYRMHP I LPS +FY G L Sbjct: 1759 QLPPTTFSTNAEKL-QYNKSLFVRMTKRDASHVQLLSIQYRMHPFISELPSKVFYHGQ-L 1816 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 D S+A++ Q + + + E G S +NP EA VE+ Sbjct: 1817 KDGPSMAKKTAAI--------WHQRNIFGPYRFFNVEGTEMKTGTSTKNPAEALAAVELY 1868 Query: 180 EYL---LRSGVP-PEDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGREKD 232 L + V +GVI+ Y Q+ ++ L+ VE +TVD FQG+EKD Sbjct: 1869 RRLSADFGTRVNLAMRVGVISMYREQLWELKRKFTEAFGSAILELVEFNTVDGFQGQEKD 1928 Query: 233 IIILSLVRSNRNGE-IGFLRDERRLNV 258 IIILS VRS N IGFL+D RR+NV Sbjct: 1929 IIILSCVRSGPNLSHIGFLKDTRRMNV 1955 >tr:Q5ASQ9_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. Length = 2234 Score = 206 bits (524), Expect = 4e-53 Identities = 98/268 (36%), Positives = 139/268 (51%), Gaps = 24/268 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ T +G+ + +F+ V+IDEAAQ++E LIPL K ILVGD K Sbjct: 1517 GAHVICATLSGSGHEMFQNLS--IEFETVVIDEAAQSIELSALIPLKYGCSKCILVGDPK 1574 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVS--VVRLNVQYRMHPEICRLPSNLFYEGNG 118 QLPPT+ SK A+ K E+SLF R+ V L++QYRMHP I P FY+G Sbjct: 1575 QLPPTVLSKVAS-KYQYEQSLFVRMQS-NHPNDVHLLDIQYRMHPAISMFPRTAFYDGR- 1631 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFI--VPLSFVDNSGVEEEEPEGYSYQNPGEAEFVV 176 L D D A P Q P F D G+ + P+G+S N E + + Sbjct: 1632 LQDGP--------DMARLRTRPWHQSELLSPYRFFDVQGLHQSAPKGHSLVNFAELKVAM 1683 Query: 177 EIVEYLLRSGVP---PEDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGRE 230 ++ E LL+ +G+ITPY GQ+ ++ ++ ++ +T D+FQGRE Sbjct: 1684 QLYERLLKDFKEYDFSGKVGIITPYKGQLRELKTQFANKYGNAIFNMIDFNTTDAFQGRE 1743 Query: 231 KDIIILSLVRSNRNGEIGFLRDERRLNV 258 ++II S VR++ N IGFL D RR+NV Sbjct: 1744 AEVIIFSCVRAS-NKGIGFLSDIRRMNV 1770 >tr:Q5KBY0_CRYNE DNA helicase, putative. Cryptococcus neoformans (Filobasidiella neoformans). Length = 748 Score = 206 bits (524), Expect = 4e-53 Identities = 108/297 (36%), Positives = 145/297 (48%), Gaps = 46/297 (15%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A++V TC A S R+ + FDV IIDEA QA+EA C +P+L + KK IL GD + Sbjct: 413 GAQIVLATCHSAGS-RQLNNMI---FDVCIIDEATQAVEAVCWVPILKS-KKLILAGDPQ 467 Query: 61 QLPPTIKSKKAA----------------------AKAGLEESLFERLVELGVSVVR--LN 96 QLPPTI SK+ A + LE +LFERL +L ++ L Sbjct: 468 QLPPTIMSKENAPPLKDLQEAIDQIKLGDSPSLKSPRTLETTLFERLEKLYGPGIKRVLQ 527 Query: 97 VQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFF---PTPQFIVPLSFVDN 153 VQYRM+ I PS YE + D S R L + + F D Sbjct: 528 VQYRMNEHIAVFPSETLYESALISDASVAKRTLLELPSVKDKTSEDVKDDLEPTVVFFDT 587 Query: 154 SGVEEEEP------------EGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQ 201 + E E S N EAE V L+ G+PP +IG++TPY Q Sbjct: 588 ADCEFYERTEGDGEATKSSIGEGSKSNENEAEIVARWARKLISLGIPPIEIGIVTPYQAQ 647 Query: 202 VELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 V LI ++L+ + + +VD QG+E++ IILSLVRSN +GE+GFL + RRLNV Sbjct: 648 VTLISSLLHE--EYPEMTIGSVDGLQGQEREAIILSLVRSNPSGEVGFLGEYRRLNV 702 >tr:Q55NJ4_CRYNE Hypothetical protein. Cryptococcus neoformans var. neoformans B-3501A. Length = 748 Score = 206 bits (524), Expect = 4e-53 Identities = 108/297 (36%), Positives = 145/297 (48%), Gaps = 46/297 (15%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A++V TC A S R+ + FDV IIDEA QA+EA C +P+L + KK IL GD + Sbjct: 413 GAQIVLATCHSAGS-RQLNNMI---FDVCIIDEATQAVEAVCWVPILKS-KKLILAGDPQ 467 Query: 61 QLPPTIKSKKAA----------------------AKAGLEESLFERLVELGVSVVR--LN 96 QLPPTI SK+ A + LE +LFERL +L ++ L Sbjct: 468 QLPPTIMSKENAPPLKDLQEAIDQIKLGDSPSLKSPRTLETTLFERLEKLYGPGIKRVLQ 527 Query: 97 VQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFF---PTPQFIVPLSFVDN 153 VQYRM+ I PS YE + D S R L + + F D Sbjct: 528 VQYRMNEHIAVFPSETLYESALISDASVAKRTLLELPSVKDKTSEDVKDDLEPTVVFFDT 587 Query: 154 SGVEEEEP------------EGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQ 201 + E E S N EAE V L+ G+PP +IG++TPY Q Sbjct: 588 ADCEFYERTEGDGEATKSSIGEGSKSNENEAEIVARWARKLISLGIPPIEIGIVTPYQAQ 647 Query: 202 VELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 V LI ++L+ + + +VD QG+E++ IILSLVRSN +GE+GFL + RRLNV Sbjct: 648 VTLISSLLHE--EYPEMTIGSVDGLQGQEREAIILSLVRSNPSGEVGFLGEYRRLNV 702 >tr:Q5KGD7_CRYNE DNA replication helicase dna2, putative. Cryptococcus neoformans (Filobasidiella neoformans). Length = 1097 Score = 206 bits (524), Expect = 4e-53 Identities = 103/277 (37%), Positives = 140/277 (50%), Gaps = 31/277 (11%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 VVA TC + +FD I+DEA+Q C+ PL +A KF+LVGDH QLP Sbjct: 734 VVAATCLAIDHPL----FFRRRFDYCIVDEASQITLPTCIGPLRMAD-KFVLVGDHYQLP 788 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVS-VVRLNVQYRMHPEICRLPSNLFYEGNGLVDI 122 P ++ A + GL+ SLF L S VV L+ QYRM+ +I L + L YEG Sbjct: 789 PIVR-HAEARRGGLDVSLFRHLSAAHPSAVVDLSYQYRMNEDIMALSNKLVYEGRLKCGN 847 Query: 123 SSVARRLEYDSANP---------------GFFPTPQFIVPLS----FVDNSGVEEEEPE- 162 VA+ + G Q ++ S F+D GV + Sbjct: 848 EQVAQSGLKLRSRKRCKEIFGDAGCTCDQGKGCWIQDLLEESAKCVFIDTDGVPALDSRV 907 Query: 163 GYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVST 222 G QN EA+ V ++ L+ SGV EDI +ITPY Q++L+ + L + VE+ T Sbjct: 908 GDLVQNEIEAKLVQQLSTALVASGVRQEDIAIITPYRQQIKLLSSYLK---PIPRVEILT 964 Query: 223 VDSFQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 D QGR+KD I++SLVRSN +G IG LRD RR+NV Sbjct: 965 ADKSQGRDKDCILVSLVRSNESGNIGDLLRDWRRINV 1001 >tr:Q55RY5_CRYNE Hypothetical protein. Cryptococcus neoformans var. neoformans B-3501A. Length = 1097 Score = 206 bits (524), Expect = 4e-53 Identities = 103/277 (37%), Positives = 140/277 (50%), Gaps = 31/277 (11%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 VVA TC + +FD I+DEA+Q C+ PL +A KF+LVGDH QLP Sbjct: 734 VVAATCLAIDHPL----FFRRRFDYCIVDEASQITLPTCIGPLRMAD-KFVLVGDHYQLP 788 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVS-VVRLNVQYRMHPEICRLPSNLFYEGNGLVDI 122 P ++ A + GL+ SLF L S VV L+ QYRM+ +I L + L YEG Sbjct: 789 PIVR-HAEARRGGLDVSLFRHLSAAHPSAVVDLSYQYRMNEDIMALSNKLVYEGRLKCGN 847 Query: 123 SSVARRLEYDSANP---------------GFFPTPQFIVPLS----FVDNSGVEEEEPE- 162 VA+ + G Q ++ S F+D GV + Sbjct: 848 EQVAQSGLKLRSRKRCKEIFGDAGCTCDQGKGCWIQDLLEESAKCVFIDTDGVPALDSRV 907 Query: 163 GYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVST 222 G QN EA+ V ++ L+ SGV EDI +ITPY Q++L+ + L + VE+ T Sbjct: 908 GDLVQNEIEAKLVQQLSTALVASGVRQEDIAIITPYRQQIKLLSSYLK---PIPRVEILT 964 Query: 223 VDSFQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 D QGR+KD I++SLVRSN +G IG LRD RR+NV Sbjct: 965 ADKSQGRDKDCILVSLVRSNESGNIGDLLRDWRRINV 1001 >tr:Q7Z6H9_HUMAN DNA2L protein (Fragment). Homo sapiens (Human). Length = 494 Score = 205 bits (523), Expect = 4e-53 Identities = 99/275 (36%), Positives = 147/275 (53%), Gaps = 30/275 (10%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 +VA TC G + FD I+DEA+Q + CL PL ++F+LVGDH+QLP Sbjct: 172 IVATTCMGINHP----IFSRKIFDFCIVDEASQISQPICLGPL-FFSRRFVLVGDHQQLP 226 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS 123 P + +++A A G+ ESLF+RL + +VV+L VQYRM+ +I L + L YEG Sbjct: 227 PLVLNREARAL-GMSESLFKRLEQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSD 285 Query: 124 SVARR-------------------LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY 164 VA + G F + L+ E+ E G Sbjct: 286 KVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGV 345 Query: 165 SYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVD 224 S N EA+ +V + +++G P DIG+I PY Q+++I ++L S+ VEV+TVD Sbjct: 346 S--NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLLAR--SIGMVEVNTVD 401 Query: 225 SFQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 +QGR+K I+++S VRSN++G +G L+D RRLNV Sbjct: 402 KYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNV 436 >tr:Q6FK55_CANGA Candida glabrata strain CBS138 chromosome M complete sequence. Candida glabrata (Yeast) (Torulopsis glabrata). Length = 1979 Score = 205 bits (523), Expect = 4e-53 Identities = 98/268 (36%), Positives = 143/268 (53%), Gaps = 26/268 (9%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 ++ T +G+A LA KF+ V+IDEA Q E +IPL K+ I+VGD QL Sbjct: 1522 DIICSTLSGSAHD--VLATLGMKFETVVIDEACQCTELSAIIPLRYGSKRCIMVGDPNQL 1579 Query: 63 PPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN--GLV 120 PPT+ S AA+ +SLF R+ E L+VQYRMHP I + PS FY+G Sbjct: 1580 PPTVLS-GAASNFKYNQSLFVRM-EKNSKPFLLDVQYRMHPAISKFPSAEFYDGRLMDGP 1637 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDN-SGVEEEEPEGYSYQNPGEAEFVVEIV 179 D+ S+ +R+ ++ + P F D SG + + + SY N E E +E+V Sbjct: 1638 DMESLNKRIWHEQ---------EPFKPYKFFDITSGQQVQNVKTMSYTNKEEIEVAIEMV 1688 Query: 180 EYLLRSGVPP----EDIGVITPYNGQVELIRNILNSRCSL----KPVEVSTVDSFQGREK 231 + L R IGVI+PY Q++ +R R K V+ +T+D FQG+EK Sbjct: 1689 DKLFRLYDNKIDFSNKIGVISPYKEQIQRMRREF-MRYFGGSITKFVDFNTIDGFQGQEK 1747 Query: 232 DIIILSLVRSNRNG-EIGFLRDERRLNV 258 +III+S VR++ + +GFL+D RR+NV Sbjct: 1748 EIIIISCVRADDSQSGVGFLKDFRRMNV 1775 >tr:Q6PI80_HUMAN DNA2L protein (Fragment). Homo sapiens (Human). Length = 435 Score = 205 bits (523), Expect = 5e-53 Identities = 99/275 (36%), Positives = 147/275 (53%), Gaps = 30/275 (10%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 +VA TC G + FD I+DEA+Q + CL PL ++F+LVGDH+QLP Sbjct: 113 IVATTCMGINHP----IFSRKIFDFCIVDEASQISQPICLGPL-FFSRRFVLVGDHQQLP 167 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS 123 P + +++A A G+ ESLF+RL + +VV+L VQYRM+ +I L + L YEG Sbjct: 168 PLVLNREARAL-GMSESLFKRLEQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSD 226 Query: 124 SVARR-------------------LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY 164 VA + G F + L+ E+ E G Sbjct: 227 KVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGV 286 Query: 165 SYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVD 224 S N EA+ +V + +++G P DIG+I PY Q+++I ++L S+ VEV+TVD Sbjct: 287 S--NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLLAR--SIGMVEVNTVD 342 Query: 225 SFQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 +QGR+K I+++S VRSN++G +G L+D RRLNV Sbjct: 343 KYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNV 377 >tr:Q8BQU5_MOUSE Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230384C22 product:hypothetical P-loop containing nucleotide triphosphate hydrolases structure containing protein, full insert sequence. (Fragment). Mus musculus (Mouse). Length = 528 Score = 205 bits (522), Expect = 6e-53 Identities = 103/263 (39%), Positives = 147/263 (55%), Gaps = 24/263 (9%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL-AKKKFILVGDH 59 + +VV +TC A L KF VV++DE +Q E L+P+ +K ILVGD Sbjct: 222 QVRVVGVTCAACA----FPCLNDLKFPVVVLDECSQMTEPASLLPIARFQCEKLILVGDP 277 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 KQLPPTI+ AA + GLE++LF+RL +G V L QYR HP I + ++LFYEG+ + Sbjct: 278 KQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPVLLRTQYRCHPAISAIANDLFYEGSLV 337 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 IS R + F + +G E+ E E S+ N EA F ++++ Sbjct: 338 NGISERERSPVLE--WLPTLC---------FYNVTGAEQVEREN-SFVNVAEATFTLKLI 385 Query: 180 EYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKP----VEVSTVDSFQGREKDIII 235 + L+ SGV IGVIT Y Q+ I N+L++ P V+VSTVD+FQG EK+I I Sbjct: 386 QSLMASGVESCMIGVITLYKSQMYKICNLLSAVDVGHPDVKAVQVSTVDAFQGAEKEITI 445 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VR+ + +GF+ E+R+NV Sbjct: 446 LSCVRTRQ---VGFIDSEKRMNV 465 >tr:Q5TGD5_HUMAN OTTHUMP00000028556. Homo sapiens (Human). Length = 1211 Score = 205 bits (521), Expect = 8e-53 Identities = 95/284 (33%), Positives = 125/284 (44%), Gaps = 36/284 (12%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK---KFILVGDHK 60 + +T ++ + + F V +DEA QA E ECLIPL L + +L GD Sbjct: 858 RIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPM 917 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVR-----------------LNVQYRMHP 103 QL P IKS + A GL S ERL+ L YR H Sbjct: 918 QLGPVIKS-RLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHE 976 Query: 104 EICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEG 163 + LPS LFY V ++ G+ P+ PL F G E E + Sbjct: 977 ALLMLPSRLFYH-----RELEVCADPTVVTSLLGWEKLPKKGFPLIFHGVRGSEAREGKS 1031 Query: 164 YSYQNPGEAEFVVEIVEYLLR---SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEV 220 S+ NP EA V+ L S V DIGVITPY QVE IR IL L ++V Sbjct: 1032 PSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIR-ILLRNVDLMDIKV 1090 Query: 221 STVDSFQGREKDIIILSLVRSNRNG------EIGFLRDERRLNV 258 +V+ FQG+E +II+S VRSN + +GFL + +R NV Sbjct: 1091 GSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNV 1134 >tr:Q5TC50_HUMAN DNA2 DNA replication helicase 2-like (Yeast) (Fragment). Homo sapiens (Human). Length = 374 Score = 204 bits (520), Expect = 1e-52 Identities = 99/275 (36%), Positives = 147/275 (53%), Gaps = 30/275 (10%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 +VA TC G + FD I+DEA+Q + CL PL ++F+LVGDH+QLP Sbjct: 59 IVATTCMGINHP----IFSRKIFDFCIVDEASQISQPICLGPL-FFSRRFVLVGDHQQLP 113 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS 123 P + +++A A G+ ESLF+RL + +VV+L VQYRM+ +I L + L YEG Sbjct: 114 PLVLNREARAL-GMSESLFKRLEQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSD 172 Query: 124 SVARR-------------------LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY 164 VA + G F + L+ E+ E G Sbjct: 173 KVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGV 232 Query: 165 SYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVD 224 S N EA+ +V + +++G P DIG+I PY Q+++I ++L S+ VEV+TVD Sbjct: 233 S--NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLLAR--SIGMVEVNTVD 288 Query: 225 SFQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 +QGR+K I+++S VRSN++G +G L+D RRLNV Sbjct: 289 KYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNV 323 >tr:Q8N346_HUMAN Hypothetical protein (Fragment). Homo sapiens (Human). Length = 378 Score = 204 bits (520), Expect = 1e-52 Identities = 99/275 (36%), Positives = 146/275 (53%), Gaps = 30/275 (10%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 +VA TC G + FD I+DEA+Q + CL PL ++F+LVGDH+QLP Sbjct: 63 IVATTCMGINHP----IFSRKIFDFCIVDEASQISQPICLGPL-FFSRRFVLVGDHQQLP 117 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS 123 P + +++A A G+ ESLF+RL + +VV+L VQYRM+ +I L + L YEG Sbjct: 118 PLVLNREARAL-GMSESLFKRLEQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSD 176 Query: 124 SVARR-------------------LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY 164 VA + G F + L+ E+ E G Sbjct: 177 KVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGV 236 Query: 165 SYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVD 224 S N EA+ +V + +++G P DIG+I PY Q+++I ++L S+ VEV+TVD Sbjct: 237 S--NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLLAR--SIGMVEVNTVD 292 Query: 225 SFQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 +QGR+K I+++S VRSN +G +G L+D RRLNV Sbjct: 293 KYQGRDKSIVLVSFVRSNNDGTVGELLKDWRRLNV 327 >tr:Q6EU00_ORYSA TRNA-splicing endonuclease positive effector-like. Oryza sativa (japonica cultivar-group). Length = 372 Score = 203 bits (518), Expect = 2e-52 Identities = 94/265 (35%), Positives = 128/265 (48%), Gaps = 15/265 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL-AKKKFILVGDH 59 AK + T + ++ FD++++DEAAQ E E LIPL L + +L+G Sbjct: 90 NAKSILCTASSSSRLHYLPEASP--FDLLVVDEAAQLKECESLIPLQLPGVRHAVLIGYE 147 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLP +KS+ A SLFERL LG L+VQYRMHP I + P + FYE Sbjct: 148 FQLPALVKSRVC-EDAEFGRSLFERLSSLGHPKHLLDVQYRMHPGISKFPVSSFYENKIS 206 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 + + R E + + FI ++G E + S NP E V IV Sbjct: 207 DGENVLHRDYERKPLAGPMYGSYSFINV-----DAGKESKGKHDKSLMNPIEVAAVTRIV 261 Query: 180 EYLLRSGVPPED---IGVITPYNGQVELIRNILNSRCSLKP---VEVSTVDSFQGREKDI 233 + L + V +GV++PY GQV I+ L V+V +VD FQG E+DI Sbjct: 262 QRLFKESVDTGRKLCVGVVSPYKGQVRAIQERLGKAYETHGGFTVKVRSVDGFQGAEEDI 321 Query: 234 IILSLVRSNRNGEIGFLRDERRLNV 258 II S VRSN G +GFL + R NV Sbjct: 322 IIFSAVRSNTTGSVGFLSNVNRTNV 346 >tr:Q9FWR3_ARATH F17F16.1 protein. Arabidopsis thaliana (Mouse-ear cress). Length = 2142 Score = 203 bits (517), Expect = 2e-52 Identities = 105/273 (38%), Positives = 139/273 (50%), Gaps = 33/273 (12%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK---KFILVGDHKQL 62 + AA K S E FD V+IDEAAQALE LIPL L K K I+VGD KQL Sbjct: 1504 VCAESLAAHKFGS-PSEDNLFDAVVIDEAAQALEPATLIPLQLLKSRGTKCIMVGDPKQL 1562 Query: 63 PPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN--GLV 120 P T+ S A+ E S+FERL G ++ L QYRMHPEICR PS FY+ V Sbjct: 1563 PATVLSNVASKF-LYECSMFERLQRAGYPILMLTQQYRMHPEICRFPSMHFYDNKLLNGV 1621 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVD-NSGVEEEEPEGYSYQNPGEAEFVVEIV 179 D+SS + F + P F D G E + S N EAE V+++ Sbjct: 1622 DMSSKSAP----------FHENHHLGPYVFYDIVDGQEHRSGDSSSVCNEQEAEAAVQLL 1671 Query: 180 EYLLR---SGVPPEDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGREKDI 233 + + S IG+ITPY Q+ ++R+ +E++TVD FQG+E DI Sbjct: 1672 RFFKKRYPSEFVAGRIGIITPYKRQLAVLRSRFTGAFGAQVTADMEMNTVDGFQGKEVDI 1731 Query: 234 IILSLVRS--------NRNGEIGFLRDERRLNV 258 ++LS VR+ N++ IGF+ D RR+NV Sbjct: 1732 LVLSTVRATHSAPDGVNQSR-IGFVADVRRMNV 1763 >tr:O94247_SCHPO SPCC737.07c protein. Schizosaccharomyces pombe (Fission yeast). Length = 660 Score = 203 bits (516), Expect = 3e-52 Identities = 107/262 (40%), Positives = 141/262 (53%), Gaps = 18/262 (6%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 KVV T GA S+ L+ +FD VIIDEA+QALE +C IPL L K IL GDH QL Sbjct: 364 KVVFCTLHGAGSR----QLKGQRFDAVIIDEASQALEPQCWIPL-LGMNKVILAGDHMQL 418 Query: 63 PPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDI 122 P ++SK+ + E L + +L LN+QYRMH I + PS+ FY+ LV Sbjct: 419 SPNVQSKRP--YISMFERLVKSQGDL--VKCFLNIQYRMHELISKFPSDTFYDSK-LVPA 473 Query: 123 SSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEG------YSYQNPGEAEFVV 176 V +RL D N + + E++ E S N EA+ V Sbjct: 474 EEVKKRLLMDLENVEETELTDSPIYFYDTLGNYQEDDRSEDMQNFYQDSKSNHWEAQIVS 533 Query: 177 EIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIIL 236 + LL +G+ +DI V+TPYN QV LIR +L + VE+ +VD QGREK+ II Sbjct: 534 YHISGLLEAGLEAKDIAVVTPYNAQVALIRQLLKEKGI--EVEMGSVDKVQGREKEAIIF 591 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 SLVRSN E+GFL ++RRLNV Sbjct: 592 SLVRSNDVREVGFLAEKRRLNV 613 >tr:Q756Z8_ASHGO AER115Wp. Ashbya gossypii (Yeast) (Eremothecium gossypii). Length = 2027 Score = 202 bits (514), Expect = 5e-52 Identities = 95/267 (35%), Positives = 141/267 (52%), Gaps = 20/267 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 E+ ++ T +G+A LA KFD VI+DEA Q E +IPL K+ I+VGD Sbjct: 1533 ESDIICSTLSGSAHD--VLASLGVKFDTVIVDEACQCTELSSIIPLRYGGKRCIMVGDPN 1590 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QLPPT+ S AA+ +SLF R+ E L+VQYRMH I PS FY+G L Sbjct: 1591 QLPPTVLS-GAASNFKYNQSLFVRM-EKNCKPHLLDVQYRMHSMISAFPSLEFYDGR-LK 1647 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNS-GVEEEEPEGYSYQNPGEAEFVVEIV 179 + D N + Q P F D G +++ + SY N E + +E++ Sbjct: 1648 NGP------NMDQVNTRPWHESQPFGPYRFFDIITGKQQQNAKTMSYVNYDECQVSIEMI 1701 Query: 180 EYLLRSGVPP----EDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGREKD 232 + LL IG+I+PY Q+++++ S K ++ +T+D FQG+EK+ Sbjct: 1702 DKLLSQYEKKVDFSGKIGIISPYREQMQMMKRAFRSYFGGTIFKYIDFNTIDGFQGQEKE 1761 Query: 233 IIILSLVRSNRN-GEIGFLRDERRLNV 258 III+S VR++ + G +GFL+D RR+NV Sbjct: 1762 IIIISCVRADDSKGGVGFLKDFRRMNV 1788 >tr:Q50M04_ENTHI Regulator of nonsense transcripts, putative. Entamoeba histolytica HM-1:IMSS. Length = 506 Score = 201 bits (512), Expect = 8e-52 Identities = 92/252 (36%), Positives = 134/252 (53%), Gaps = 13/252 (5%) Query: 8 TCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIK 67 C L K KF I+DEAAQ+LE E L ++ +K +L+GD +QL PT Sbjct: 1 MCLFYTHYLSRSTLLKQKFFASIVDEAAQSLEPETLAGII-NVRKAVLIGDIQQLQPTCL 59 Query: 68 SKKAAAKAGLEESLFERLVEL-GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVA 126 S +A +AG ++S+FER + + L +QYRMHP I + +FY +SS Sbjct: 60 STEA-REAGFQKSMFERFMANTQIKRTMLKIQYRMHPAISEFSNKMFYSSKLENGVSSKD 118 Query: 127 RRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSG 186 R FFP P+ F++ G E G SY N GE + + E+VE LL++ Sbjct: 119 RFDNRII---NFFPDYT--NPIMFINCDGTEHYGSSGTSYNNAGEVQIIQEVVEKLLKNK 173 Query: 187 VPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGE 246 + +IG+I+PY Q ELI ++ ++V+ +D FQG EK+ II S VRSN+ Sbjct: 174 IKENEIGIISPYQAQQELISQYVS-----TKIKVANIDGFQGNEKEYIIFSCVRSNQTLG 228 Query: 247 IGFLRDERRLNV 258 +GF+ D +RLNV Sbjct: 229 VGFVNDYKRLNV 240 >tr:Q8SVI3_ENCCU Similarity to HYPOTHETICAL ZINC FINGER PROTEINS YDRD_SCHPO. Encephalitozoon cuniculi. Length = 563 Score = 201 bits (512), Expect = 8e-52 Identities = 92/255 (36%), Positives = 119/255 (46%), Gaps = 43/255 (16%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 A + A+ SL EK KFD V++DEA QA EAE + ++ + FILVGD QL Sbjct: 301 KQANSPVVFATLFSSL-KEKRKFDWVLVDEACQASEAESFLAVVKG-RAFILVGDPMQLC 358 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS 123 P + L ESL + + LN QYRM ++ R + +FY G Sbjct: 359 P--------ETSSLYESLA-------LPTMLLNEQYRMPSDLLRFSNEVFYRG------- 396 Query: 124 SVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLL 183 + + FVD E E G S N GEAE V IV L Sbjct: 397 -------QVKSATRECTPVFGKSFILFVDTQYFELYESGGVSKSNIGEAEIVRSIVGIL- 448 Query: 184 RSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNR 243 E +G+I PY QV L+R + VEVSTVD FQG+E+D IIL+LVR N Sbjct: 449 ----KEEQVGIIAPYTSQVLLLR-------EMVDVEVSTVDGFQGQERDYIILTLVRCND 497 Query: 244 NGEIGFLRDERRLNV 258 + GFL + +RLNV Sbjct: 498 RDDFGFLDNGKRLNV 512 >tr:Q5B727_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. Length = 1048 Score = 201 bits (512), Expect = 9e-52 Identities = 101/289 (34%), Positives = 131/289 (45%), Gaps = 41/289 (14%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 +VVA TC G + FD I+DEA+Q CL P+ +AK FILVGDH QL Sbjct: 637 QVVATTCLGVGH----NIFTQRVFDYCIVDEASQITLPVCLGPIRMAKT-FILVGDHYQL 691 Query: 63 PPTIKSKKAAAKAGLEESLFERLVELGV-SVVRLNVQYRMHPEICRLPSNLFY-----EG 116 PP +++K+A A GL+ SLF+ L + SVV L QYRM +I L + L Y G Sbjct: 692 PPLVQNKEAQA-GGLDVSLFKLLSDAHPSSVVNLEHQYRMCEDIMLLSNTLIYSGRLKCG 750 Query: 117 NGLVDISSVARR-------------------------LEYDSANPGFFPTPQFIVPLSFV 151 V SV P L Sbjct: 751 TAEVAARSVEIPNIGGLKQHHLSDFSQTCNSRQLCLGTSQSRCWLRDLVDPLAKTYLVDT 810 Query: 152 DNSGVEEEEPEGYSYQ-NPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILN 210 D G E S NP EA ++VE + G+P IGVIT Y Q+ L++ L Sbjct: 811 DTLGTPAGEVANGSRIVNPIEATLCTQLVEAFISCGIPARSIGVITFYRSQLSLLKQNLR 870 Query: 211 SRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 L +E+ T D FQGR+K++IILS VRSN+ +G L D RR+NV Sbjct: 871 HH--LPALEMHTADKFQGRDKEVIILSCVRSNQENYVGDLLSDWRRVNV 917 >tr:Q5JUI9_HUMAN OTTHUMP00000064564. Homo sapiens (Human). Length = 2677 Score = 200 bits (510), Expect = 2e-51 Identities = 100/276 (36%), Positives = 138/276 (50%), Gaps = 30/276 (10%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFK---FDVVIIDEAAQALEAECLIPLLLAKKKFILVG 57 E+ ++ T + + A F VI+DEA Q+ E E L PL+ K ILVG Sbjct: 2147 ESHIICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVG 2206 Query: 58 DHKQLPPTIKSKKAAAKAGLEESL---FERLVELGV--------SVVRLNVQYRMHPEIC 106 D KQLPPT+ S KA G ++S+ F RL+E V +++L VQYRMHP+IC Sbjct: 2207 DPKQLPPTVISMKAQE-YGYDQSMMARFCRLLEENVEHNMISRLPILQLTVQYRMHPDIC 2265 Query: 107 RLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 PSN Y N + + A R D V + G E + SY Sbjct: 2266 LFPSNYVYNRNLKTNRQTEAIRCSSDW-----------PFQPYLVFDVGDGSERRDNDSY 2314 Query: 167 QNPGEAEFVVEIVEYL--LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPV-EVSTV 223 N E + V+EI++ + R V +IG+IT Y Q +I+ L+ K EV TV Sbjct: 2315 INVQEIKLVMEIIKLIKDKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTV 2374 Query: 224 DSFQGREKDIIILSLVRSNR-NGEIGFLRDERRLNV 258 D+FQGR+KD +I++ VR+N G IGFL +RLNV Sbjct: 2375 DAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNV 2410 >tr:Q7QYL6_GIALA GLP_393_59373_57169. Giardia lamblia ATCC 50803. Length = 734 Score = 200 bits (510), Expect = 2e-51 Identities = 105/292 (35%), Positives = 136/292 (46%), Gaps = 36/292 (12%) Query: 2 AKVVAMTCTGAASKRKS-LALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A++VA T G ++ A FD V++DEA+QAL+ L +LL K K +L GD Sbjct: 392 ARLVACTLNGTSTSLCLRAAESSGGFDFVLVDEASQALDVSLLGAILLTKGKLVLAGDPN 451 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGV--------------SVVRLNVQYRMHPEIC 106 QLPPT+ S +A R+ V +V L QYR +IC Sbjct: 452 QLPPTVISDRAMHSKTFSLPFLNRITSNLVQRAEEIVSEEAKISPLVMLEQQYRFCHQIC 511 Query: 107 RLPSNLFYEGN----GLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPE 162 R PS FY G V S+A L D N FVD + E Sbjct: 512 RFPSEEFYLGRLVPAESVRNISLADFLGEDWFNCVDDDALPKNPTELFVDTCSMNLLETR 571 Query: 163 GY---------SYQNPGEAEFVVEIVEYLLRS-------GVPPEDIGVITPYNGQVELIR 206 S N GEA+ VV +V+Y + G P IG I+PY QV L+ Sbjct: 572 EEDGQTLLPQLSILNHGEADIVVRLVDYFVSLLSSSPKVGTPQTVIGCISPYTAQVSLLA 631 Query: 207 NILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 + + + K +EVSTVD FQGREK+III+S VRSN G++GFL D RRLNV Sbjct: 632 GRMEAHVT-KGLEVSTVDGFQGREKEIIIISFVRSNDEGDVGFLSDIRRLNV 682 >tr:Q6C3N5_YARLI Similar to sp|P38859 Saccharomyces cerevisiae YHR164c DNA2 DNA replication helicase. Yarrowia lipolytica (Candida lipolytica). Length = 1364 Score = 200 bits (509), Expect = 2e-51 Identities = 100/273 (36%), Positives = 130/273 (47%), Gaps = 30/273 (10%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 VV T G L++ FD I+DEA+Q CL P+ A KF+LVGDH QL Sbjct: 1020 VVGATALGIGD----WVLQERHFDYCIVDEASQITLPFCLGPIRYAD-KFVLVGDHYQLT 1074 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVS-VVRLNVQYRMHPEICRLPSNLFY-----EGN 117 P +K+ AGL ESLF+ L + + VV L +QYRM +I L + L Y G+ Sbjct: 1075 PIVKN---PEAAGLRESLFKMLCDAHPTQVVNLGIQYRMCADIMLLSNTLIYDGKLKCGS 1131 Query: 118 GLVDISSVARR-----------LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 V S+A + G P+ V D +E + Sbjct: 1132 DEVANQSLAVPQLSKLRTLYADGLPNGDYLGHVLDPKRKVIFLNTDLVPAQETIAGDRIH 1191 Query: 167 QNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSF 226 NP EA V +IVE L GV IG I+ Y Q++LI L R +EV T D F Sbjct: 1192 -NPTEAVIVGQIVEALCLCGVEDSQIGCISQYRAQLKLINKELALR---SGIEVMTADKF 1247 Query: 227 QGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 QGR+KD I++SLVRSN +G L+D RRLNV Sbjct: 1248 QGRDKDCIVVSLVRSNNEQRVGDLLKDWRRLNV 1280 >tr:Q758I0_ASHGO AEL218Wp. Ashbya gossypii (Yeast) (Eremothecium gossypii). Length = 1471 Score = 200 bits (509), Expect = 2e-51 Identities = 96/267 (35%), Positives = 136/267 (50%), Gaps = 15/267 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 E +V+A TC G LAL FD VI+DEA+Q L P+ +F+LVGDH Sbjct: 1165 EFQVIATTCLGVND--SLLALRTKNFDYVILDEASQVSLPIALGPIRYGD-RFLLVGDHY 1221 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVS-VVRLNVQYRMHPEICRLPSNLFYEGN-G 118 QLPP +++ A GLE++LF+ L + S + L +QYRM+ +I L + L Y+G Sbjct: 1222 QLPPLVRNHIAKED-GLEDTLFQLLCDQHPSCMTELTLQYRMNEDIMALSNELIYDGKLK 1280 Query: 119 LVDISSVARRLEYDSANPGFFPT------PQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 D S R L + P P V + DN E + + +N GE+ Sbjct: 1281 CGDRSVAERALRIEVPKSITQPWLREALNPCKRVIMINYDNIPSIRETADRDNIRNEGES 1340 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKD 232 V +V LL G DIGV+T Y Q+ L+++ L S +EV T D FQGR+K+ Sbjct: 1341 RIVGLLVSGLLSCGASSADIGVMTLYRAQLRLLKSELAPHSS--TLEVLTADQFQGRDKE 1398 Query: 233 IIILSLVRSNRNGEIG-FLRDERRLNV 258 +I+S VR N + G LR+ RR+NV Sbjct: 1399 CVIISTVRCNPSLNAGALLRELRRVNV 1425 >tr:Q6CAV3_YARLI Similar to tr|Q9VGG9 Drosophila melanogaster CG31368-PA (Fragment). Yarrowia lipolytica (Candida lipolytica). Length = 1168 Score = 200 bits (509), Expect = 2e-51 Identities = 92/272 (33%), Positives = 139/272 (51%), Gaps = 25/272 (9%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK-----KKFIL 55 EAKVVAMT A+ SL F++ ++ +EAAQ E E +IP+ L K K+ +L Sbjct: 819 EAKVVAMTAKYASMHHDSLVRLGFRYSSLVAEEAAQLTEIELVIPMTLQKETDALKRVVL 878 Query: 56 VGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYE 115 +GDHKQ P + ++ K ++S F R + LG+ L+ Q R P I + + Sbjct: 879 IGDHKQNAPIVTNE-LVRKCNFDQSTFGRFIRLGMPTFLLDSQGRAKPSISDIYGWRY-- 935 Query: 116 GNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFV 175 GL ++ + Y AN GF QFI + G E E + QN GEAE+ Sbjct: 936 -GGLKNLPHT-KEGVYQYANSGFLHDVQFINVDDY---EGQGETEVAPHVIQNLGEAEYA 990 Query: 176 VEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC---------SLKPVEVSTVDSF 226 + + +Y+ G P + I ++T YNGQ L++ I + RC P ++TVD + Sbjct: 991 IALYQYMRLLGYPADKITILTMYNGQKALLQEICSRRCASTKGDREIFGMPRVITTVDQY 1050 Query: 227 QGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG + D +I+SLVR+ +G+LRD RR+ V Sbjct: 1051 QGEQNDYVIVSLVRTKH---VGYLRDVRRMTV 1079 >tr:Q5V4Z1_HALMA DNA binding protein eukaryotic-like. Haloarcula marismortui (Halobacterium marismortui). Length = 741 Score = 200 bits (509), Expect = 2e-51 Identities = 103/267 (38%), Positives = 129/267 (48%), Gaps = 36/267 (13%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A VVA+T AA+ +FD+V++DEA Q+ A IPL+ A + +L GDH+ Sbjct: 449 RADVVAVTNNSAATLA-------REFDLVVLDEATQSTCAASCIPLVRAD-RAVLAGDHR 500 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVE----LGVSVVRLNVQYRMHPEICRLPSNLFYEG 116 QLPP S + + SLFE L ++L QYRMH +I P+ FY Sbjct: 501 QLPPYSASDEPPE-SSYGHSLFEHLYADGGVYDGVGLQLQTQYRMHRDIAYFPNRRFY-- 557 Query: 117 NGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVV 176 + G P P N G E G+S NP EA V Sbjct: 558 --------------DRTLRNGRAVDPLPDRPAIEGYNVGGRVETV-GHSKSNPTEARLVA 602 Query: 177 EIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS-LKPVEVSTVDSFQGREKDIII 235 +VE LL S VP +IGVITPY+ QV IR L R V V T+DSFQG E+ I+ Sbjct: 603 HLVEDLL-SDVPANEIGVITPYSAQVSRIRETLTERTDAGDRVTVDTIDSFQGGERTAIV 661 Query: 236 LSLVRSNRNGEIGFLR----DERRLNV 258 LSLVRSN G +GFLR RRLNV Sbjct: 662 LSLVRSNAEGTVGFLRRPVDGPRRLNV 688 >tr:Q9HNB7_HALN1 DNA binding protein eukaryotic-like. Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081). Length = 751 Score = 199 bits (507), Expect = 3e-51 Identities = 89/265 (33%), Positives = 128/265 (48%), Gaps = 23/265 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 + V AA+ + ++ FD+ ++DEA QA A I + A +L GDH+ Sbjct: 449 RQRGVDAADVVAATTNGAATFDQNAFDLAVVDEATQASRAATAIAVNAADT-LVLAGDHR 507 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLFYEGNG 118 QLPP + A + SLFE L++ V L QYRMH I P+ FY G Sbjct: 508 QLPPYGVREGGA--GEMRPSLFETLIDRYGDDVAVLLARQYRMHDAIAGFPNEAFYGGRL 565 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEI 178 + R ++ + P++ VD +G E + G S +N EA V + Sbjct: 566 ETAAVAADRAVD-------------GLPPVAVVDVAGQERRDERGASVRNAAEASVVADR 612 Query: 179 VEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKP-VEVSTVDSFQGREKDIIILS 237 V+ + R+GV P D+GVI Y+ V IR +L R +P + V TVDSFQG E+D +++S Sbjct: 613 VDTIRRAGVEPGDLGVIAAYSDHVSAIRGVLADRGLDRPALTVDTVDSFQGGERDAVVVS 672 Query: 238 LVRSNRNGEIGFLRD----ERRLNV 258 RSN + GFL RRLNV Sbjct: 673 FARSNDAHDAGFLEHPAAGPRRLNV 697 >tr:Q5JUJ1_HUMAN OTTHUMP00000022429 (Fragment). Homo sapiens (Human). Length = 948 Score = 199 bits (507), Expect = 3e-51 Identities = 100/276 (36%), Positives = 138/276 (50%), Gaps = 30/276 (10%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFK---FDVVIIDEAAQALEAECLIPLLLAKKKFILVG 57 E+ ++ T + + A F VI+DEA Q+ E E L PL+ K ILVG Sbjct: 389 ESHIICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVG 448 Query: 58 DHKQLPPTIKSKKAAAKAGLEESL---FERLVELGV--------SVVRLNVQYRMHPEIC 106 D KQLPPT+ S KA G ++S+ F RL+E V +++L VQYRMHP+IC Sbjct: 449 DPKQLPPTVISMKAQE-YGYDQSMMARFCRLLEENVEHNMISRLPILQLTVQYRMHPDIC 507 Query: 107 RLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 PSN Y N + + A R D V + G E + SY Sbjct: 508 LFPSNYVYNRNLKTNRQTEAIRCSSDW-----------PFQPYLVFDVGDGSERRDNDSY 556 Query: 167 QNPGEAEFVVEIVEYL--LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPV-EVSTV 223 N E + V+EI++ + R V +IG+IT Y Q +I+ L+ K EV TV Sbjct: 557 INVQEIKLVMEIIKLIKDKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTV 616 Query: 224 DSFQGREKDIIILSLVRSNR-NGEIGFLRDERRLNV 258 D+FQGR+KD +I++ VR+N G IGFL +RLNV Sbjct: 617 DAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNV 652 >tr:Q6AZD7_HUMAN ALS4 protein (Fragment). Homo sapiens (Human). Length = 917 Score = 199 bits (506), Expect = 4e-51 Identities = 100/276 (36%), Positives = 138/276 (50%), Gaps = 30/276 (10%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFK---FDVVIIDEAAQALEAECLIPLLLAKKKFILVG 57 E+ ++ T + + A F VI+DEA Q+ E E L PL+ K ILVG Sbjct: 387 ESHIICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVG 446 Query: 58 DHKQLPPTIKSKKAAAKAGLEESL---FERLVELGV--------SVVRLNVQYRMHPEIC 106 D KQLPPT+ S KA G ++S+ F RL+E V +++L VQYRMHP+IC Sbjct: 447 DPKQLPPTVISMKAQE-YGYDQSMMARFCRLLEENVEHNMISRLPILQLTVQYRMHPDIC 505 Query: 107 RLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 PSN Y N + + A R D V + G E + SY Sbjct: 506 LFPSNYVYNRNLKTNRQTEAIRCSSDW-----------PFQPYLVFDVGDGSERRDNDSY 554 Query: 167 QNPGEAEFVVEIVEYL--LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPV-EVSTV 223 N E + V+EI++ + R V +IG+IT Y Q +I+ L+ K EV TV Sbjct: 555 INVQEIKLVMEIIKLIKDKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTV 614 Query: 224 DSFQGREKDIIILSLVRSNR-NGEIGFLRDERRLNV 258 D+FQGR+KD +I++ VR+N G IGFL +RLNV Sbjct: 615 DAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNV 650 >tr:Q5JUJ0_HUMAN OTTHUMP00000022428 (Fragment). Homo sapiens (Human). Length = 919 Score = 199 bits (506), Expect = 4e-51 Identities = 100/276 (36%), Positives = 138/276 (50%), Gaps = 30/276 (10%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFK---FDVVIIDEAAQALEAECLIPLLLAKKKFILVG 57 E+ ++ T + + A F VI+DEA Q+ E E L PL+ K ILVG Sbjct: 389 ESHIICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVG 448 Query: 58 DHKQLPPTIKSKKAAAKAGLEESL---FERLVELGV--------SVVRLNVQYRMHPEIC 106 D KQLPPT+ S KA G ++S+ F RL+E V +++L VQYRMHP+IC Sbjct: 449 DPKQLPPTVISMKAQEY-GYDQSMMARFCRLLEENVEHNMISRLPILQLTVQYRMHPDIC 507 Query: 107 RLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 PSN Y N + + A R D V + G E + SY Sbjct: 508 LFPSNYVYNRNLKTNRQTEAIRCSSDW-----------PFQPYLVFDVGDGSERRDNDSY 556 Query: 167 QNPGEAEFVVEIVEYL--LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPV-EVSTV 223 N E + V+EI++ + R V +IG+IT Y Q +I+ L+ K EV TV Sbjct: 557 INVQEIKLVMEIIKLIKDKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTV 616 Query: 224 DSFQGREKDIIILSLVRSNR-NGEIGFLRDERRLNV 258 D+FQGR+KD +I++ VR+N G IGFL +RLNV Sbjct: 617 DAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNV 652 >tr:Q51PH8_MAGGR Hypothetical protein. Magnaporthe grisea 70-15. Length = 1299 Score = 199 bits (506), Expect = 5e-51 Identities = 120/304 (39%), Positives = 153/304 (50%), Gaps = 58/304 (19%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 KVV T G+ L + KFDVVIIDEA+QALEA+C + LL A KK +L GDH QL Sbjct: 755 KVVLATLHGSGGF----QLRQEKFDVVIIDEASQALEAQCWVALLSA-KKAVLAGDHLQL 809 Query: 63 PPTIKS--KKAAAKAG-------------------------LEESLFERLVELGVSVV-- 93 PPTIKS KAA A LE +LF+RL++L + Sbjct: 810 PPTIKSLNSKAAKTATGGDGSGTADGEESSAGQSRKKKGVTLETTLFDRLLDLHGPAIKR 869 Query: 94 RLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDN 153 L QYRMH +I R PS+ Y G LV +V RL D T PL F+D Sbjct: 870 MLTTQYRMHEKIMRFPSDELYGGR-LVAAEAVKERLLKDLPYKVE-DTDDTSEPLIFIDT 927 Query: 154 SGVEEEEPE--------------------GYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG 193 G + E G S N EA V + V L+ +GV PEDI Sbjct: 928 QGGDFPERNDEMDNGDADDKKKTKRMLLHGESKSNEMEAALVAQHVRSLVDAGVKPEDIA 987 Query: 194 VITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDE 253 ITPYN Q+ ++ +L R +E+ +VD FQGREK+ +++SL RSN +GE+GFL + Sbjct: 988 CITPYNAQLAVLAPLLKDRF--PGIELGSVDGFQGREKEAVVVSLCRSNPDGEVGFLGER 1045 Query: 254 RRLN 257 RRLN Sbjct: 1046 RRLN 1049 >tr:Q59PZ8_CANAL Potential helicase, zinc finger protein. Candida albicans SC5314. Length = 1105 Score = 198 bits (504), Expect = 6e-51 Identities = 107/300 (35%), Positives = 138/300 (46%), Gaps = 66/300 (22%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK-KKFILVGDH 59 +AKVV T A VVIIDEA Q+ E LIPL L +K +LVGD Sbjct: 784 QAKVVLATPVVAGGI-----KSLNNVRVVIIDEATQSSEPTTLIPLALPSVEKLVLVGDQ 838 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELG--VSVVRLNVQYRMHPEICRLPSNLFYEG- 116 KQL + L SLFER++ G + L+ QYRMHPEI P FY G Sbjct: 839 KQL------SCFSLIPNLSLSLFERVLLNGTYKTPHMLDTQYRMHPEISEFPRTKFYGGL 892 Query: 117 -NGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEP--------EGYSYQ 167 +D ++ S PL F D G E+ GY+Y Sbjct: 893 LKDGIDANARQSEGVISS-------------PLYFWDTKGNAREQSVRNFLREDGGYTYT 939 Query: 168 NPGEAEFVVEIVEYLLRS-GVPPEDIGVITPYNGQVELIRNILNSRCSL----------- 215 N E ++ +++ L+ + GV PE IG+ITPY+GQ +LI L + Sbjct: 940 NRDEIGYIQQVLRTLIITKGVKPEQIGIITPYSGQRDLISATLVKDDVINPSNEQMKTEV 999 Query: 216 ---------KPVEVS--------TVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 KPV + ++D+FQGREKD +I+S VRSN G IGFLRDERRLNV Sbjct: 1000 DIDDLKNDSKPVTIHIVSGIMIASIDAFQGREKDYMIMSCVRSNTKGVIGFLRDERRLNV 1059 >tr:Q6FQZ6_CANGA Similar to sp|P38859 Saccharomyces cerevisiae YHR164c DNA2 DNA helicase. Candida glabrata (Yeast) (Torulopsis glabrata). Length = 1512 Score = 197 bits (502), Expect = 1e-50 Identities = 95/273 (34%), Positives = 134/273 (49%), Gaps = 23/273 (8%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 VVA TC G L++ FD VIIDEA+Q L PL A KFI+VGDH QLP Sbjct: 1150 VVATTCLGIRDT--MLSMRTKDFDYVIIDEASQIALPIALGPLRFAD-KFIMVGDHLQLP 1206 Query: 64 PTIKSKKAAAKAGLEESLFERLV-ELGVSVVRLNVQYRMHPEICRLPSNLFYEG------ 116 P +KS+ A GLE+S+F+ L ++ L QYRM EI +L ++L Y+G Sbjct: 1207 PLVKSESARV-GGLEDSMFKILCERFPEALCELTFQYRMCDEIVKLSNHLIYDGKLRCGN 1265 Query: 117 ----------NGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 N + + L DS +P+ V D S E E + Sbjct: 1266 EEVAVQQLGINTDNLAAYINPNLSADSCWLESVLSPKNKVLFLNYDASKSITESAEKDNI 1325 Query: 167 QNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSF 226 N GE E + +E ++ SGV + IGV+T Y Q+ ++ +E+ T D F Sbjct: 1326 TNAGEIELTRQCIEGMIESGVALKSIGVMTLYRAQLRALKKEF-ENQRYDGLEILTADQF 1384 Query: 227 QGREKDIIILSLVRSN-RNGEIGFLRDERRLNV 258 QGR+K+ II+S+VRSN + L++ RR+NV Sbjct: 1385 QGRDKECIIISMVRSNAQFNGGSLLKELRRVNV 1417 >tr:Q6FKP9_CANGA Similar to sp|P34243 Saccharomyces cerevisiae YKL017c DIP1. Candida glabrata (Yeast) (Torulopsis glabrata). Length = 695 Score = 197 bits (501), Expect = 1e-50 Identities = 103/290 (35%), Positives = 142/290 (48%), Gaps = 35/290 (12%) Query: 1 EAKVVAMTCTGAASKRKSLA--------LEKFKFDVVIIDEAAQALEAECLIPLLLAKK- 51 + V + +S R+ FD VIIDE +Q+LE +C IPL+ + Sbjct: 360 KQSRVVVATLHGSSSRELCNYYKSIEEGENDNLFDYVIIDEVSQSLEPQCWIPLISHLQS 419 Query: 52 ---KFILVGDHKQLPPTIKSKKAAAKAG-LEESLFERLVELGVSVV--RLNVQYRMHPEI 105 K +L GD KQLPPTIK+ L +LF+RLV + LN+QYRM+ +I Sbjct: 420 KITKLVLAGDSKQLPPTIKTNNNDKVMKVLGTTLFDRLVNMYGDEFKNLLNIQYRMNAKI 479 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGV-------EE 158 S Y G D S S PG + P+ + D G EE Sbjct: 480 MEFSSKAMYNGELKADSSV---ENIVLSDLPGVDSNEETDEPIIWYDTQGDDFPEVDEEE 536 Query: 159 EEPEGYS-------YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILN- 210 +E + S N EA V+ V L+ S V + IG+I+PYN QV L++ ++N Sbjct: 537 DELKSKSAKFLYSSKLNTNEAYLVLHHVRKLIESNVQQDCIGIISPYNAQVSLLKKLVNG 596 Query: 211 --SRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 +E+S+VD FQGREK+ IILSLVRSN E+GFL+++RRLNV Sbjct: 597 TEDSPVYPLIEISSVDGFQGREKECIILSLVRSNDKAEVGFLKEQRRLNV 646 >tr:Q511Y2_ENTHI Regulator of nonsense transcripts, putative. Entamoeba histolytica HM-1:IMSS. Length = 915 Score = 197 bits (501), Expect = 1e-50 Identities = 91/250 (36%), Positives = 134/250 (53%), Gaps = 13/250 (5%) Query: 10 TGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSK 69 S S + K KF I+DEAAQ+LE E L ++ +K +L+GD +QL PT S Sbjct: 572 CSTLSLCTSSIMLKQKFFASIVDEAAQSLEPETLAGII-NVRKAVLIGDIQQLQPTCLST 630 Query: 70 KAAAKAGLEESLFERLVEL-GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARR 128 +A +AG ++S+FER + + L QYRMHP I + +FY +SS R Sbjct: 631 EA-REAGFQKSMFERFMANTQIKRTMLKTQYRMHPAISEFSNKMFYSSKLENGVSSKDRF 689 Query: 129 LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVP 188 FFP P+ F++ G E+ G SY N GE + + E+VE L++ + Sbjct: 690 DNRII---NFFPDYT--NPIMFINCDGTEQYGSSGTSYNNAGEVQIIQEVVEKFLKNKIK 744 Query: 189 PEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIG 248 +IG+I+PY Q ELI ++ ++V+ +D FQG EK+ II S VRSN+ +G Sbjct: 745 ENEIGIISPYQAQQELISQYVS-----TKIKVANIDGFQGNEKEYIIFSCVRSNQTLGVG 799 Query: 249 FLRDERRLNV 258 F+ D +RLNV Sbjct: 800 FVNDYKRLNV 809 >tr:Q51H96_ENTHI TRNA splicing endonuclease, putative. Entamoeba histolytica HM-1:IMSS. Length = 1140 Score = 197 bits (501), Expect = 2e-50 Identities = 100/264 (37%), Positives = 137/264 (51%), Gaps = 19/264 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 EA ++ T + S L K K + VIIDEAAQ++E LIPL ++ IL+GD + Sbjct: 515 EADILCCTLNTSGSDI-FLNCIKEKIENVIIDEAAQSVEISTLIPLRFGAERCILIGDPQ 573 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QLP T+ S AA +G + SLFERL + GV V L +QYRMHP I PSN FY G Sbjct: 574 QLPATVIS-VAAQNSGYDRSLFERLYKCGVFVDMLKIQYRMHPLIREFPSNQFYSG---- 628 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 L + ++ EE G + N E + V+ ++E Sbjct: 629 -------ELIDGRDESILPCSIDKGFGPVVFYDACGGLEERVGQTLANEVEVQIVIGLLE 681 Query: 181 YLLRS--GVPPEDIGVITPYNGQVELIRNILNSRCSLKP---VEVSTVDSFQGREKDIII 235 L++ DIG++TPY Q+ LI+ + + LK + V+T+D FQGRE DIII Sbjct: 682 GLIKKYPNCKEWDIGIVTPYRQQLLLIKMAIETSLLLKDMSKLCVNTIDGFQGREMDIII 741 Query: 236 LSLVRSNRNGE-IGFLRDERRLNV 258 S VRS++ IGFL D RR+NV Sbjct: 742 FSCVRSSQIKPSIGFLSDIRRMNV 765 >tr:Q6NYU2_BRARE Helicase with zinc-finger domain. Brachydanio rerio (Zebrafish) (Danio rerio). Length = 1860 Score = 196 bits (500), Expect = 2e-50 Identities = 80/289 (27%), Positives = 120/289 (41%), Gaps = 48/289 (16%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK--KFILVGD 58 E V + + L LE F +++DEAAQA+E E ++PL LA K + +L GD Sbjct: 756 ERHRVVVVTLSTSQYLCQLDLEPGIFTHILLDEAAQAMECETIMPLALAVKSTRVVLAGD 815 Query: 59 HKQLPPTIKSKKAAAK---AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYE 115 H QL P + S+ A + L + L+E + L YR H I S+LFYE Sbjct: 816 HMQLSPFVYSEFARERNLHVSLLDRLYEHYPSEYPCRILLCENYRSHEAIINYTSDLFYE 875 Query: 116 GNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFV 175 G G P + PL+F G + +E +Y N E + Sbjct: 876 GK---------------LMASGKQPPHKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEI 920 Query: 176 VEIVEYLLR------SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGR 229 VE VE + + + IGV++PY QV IR L + + V V V + QG+ Sbjct: 921 VERVEEMRKKWPVSWGKLEEGSIGVVSPYADQVFRIRAELRKK-RMSEVSVERVLNVQGK 979 Query: 230 EKDIIILSLVRSN---------------------RNGEIGFLRDERRLN 257 + ++ LS VR+ + + GFL + + LN Sbjct: 980 QFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDYGFLSNYKLLN 1028 >tr:Q6BIX7_DEBHA Similar to CA2652|CaDNA2 Candida albicans CaDNA2 DNA helicase. Debaryomyces hansenii (Yeast) (Torulaspora hansenii). Length = 1512 Score = 196 bits (500), Expect = 2e-50 Identities = 95/278 (34%), Positives = 127/278 (45%), Gaps = 31/278 (11%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 VVA TC G +L FD IIDEA+Q + PL KFILVGDH QLP Sbjct: 1150 VVAATCLGIGDIAFNLRT---HFDYCIIDEASQVSLPISIGPL-RFCDKFILVGDHNQLP 1205 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGV-SVVRLNVQYRMHPEICRLPSNLFYEGN----- 117 P ++ A K GL SLF+ L + S+ L QYRM EI L + L Y G Sbjct: 1206 PLVQHPNPAIKQGLSRSLFKILSDTYPQSIAELTYQYRMCEEIMLLSNVLIYGGRLKCGT 1265 Query: 118 ----------------GLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEP 161 + +L + P+ V D+ E Sbjct: 1266 EKVAKQSLYIPNPNMIEDQISPQYSLKLRKEDLWIDSILKPENKVIFINHDDVP-GVERT 1324 Query: 162 EGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVS 221 G +N E + + +IVE L GV IGV++ Y Q+ L+ L + VEV Sbjct: 1325 IGEKVENLTEVDLIKQIVESLTMCGVKESSIGVMSLYRSQLRLLHRGLLHK---PDVEVL 1381 Query: 222 TVDSFQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 T D FQGR+KD II+SLVRSN++ ++G L++ RR+NV Sbjct: 1382 TADQFQGRDKDCIIISLVRSNKDNKVGDLLKEWRRVNV 1419 >tr:Q6IMG6_MOUSE Senataxin. Mus musculus (Mouse). Length = 2646 Score = 196 bits (498), Expect = 3e-50 Identities = 98/277 (35%), Positives = 134/277 (48%), Gaps = 32/277 (11%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFK---FDVVIIDEAAQALEAECLIPLLLAKKKFILVG 57 E+ V+ T + + A F VI+DEA Q+ E E L PL+ K ILVG Sbjct: 2123 ESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLILVG 2182 Query: 58 DHKQLPPTIKSKKAAAKAGLEESLFERLVELGV-----------SVVRLNVQYRMHPEIC 106 D KQLPPT+ S KA G ++S+ R +L V++L +QYRMHP+IC Sbjct: 2183 DPKQLPPTVISMKAQEY-GYDQSMMARFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDIC 2241 Query: 107 RLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 PSN Y N ++ S+ F P V + G E + SY Sbjct: 2242 LFPSNYVYNKN---LKTNRLTESIRCSSEWPFQPY--------LVFDVGDGSERRDNDSY 2290 Query: 167 QNPGEAEFVVEIVEYLLRSGVPP---EDIGVITPYNGQVELIRNILNSRCSLKPV-EVST 222 N E + V+EI++ L++ +IG+IT Y Q +I+ L K EV T Sbjct: 2291 INVQEIKLVMEIIK-LIKEKRKDISFRNIGIITHYKAQKTMIQKDLEKEFDKKGPAEVDT 2349 Query: 223 VDSFQGREKDIIILSLVR-SNRNGEIGFLRDERRLNV 258 VD+FQGR+KD II++ VR S G IGFL +RLNV Sbjct: 2350 VDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNV 2386 >tr:Q5CSY5_CRYPV Sen1p/ NAM7 like superfamily I RNA helicase. Cryptosporidium parvum. Length = 994 Score = 196 bits (498), Expect = 3e-50 Identities = 110/307 (35%), Positives = 144/307 (46%), Gaps = 58/307 (18%) Query: 1 EAKVVAMTCTGAASKRKSLALEKF--------------KFDVVIIDEAAQALEAECLIPL 46 E+++V T + SK L + FD VIIDEA+Q +E LIPL Sbjct: 519 ESQIVCATLSVCGSKELISILSQNGRMQAAGSGDRTALSFDTVIIDEASQGVELSTLIPL 578 Query: 47 LLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEIC 106 L K+ ILVGD KQLP T+ S++A + + SLF+RL G VV L+VQYRMHP+I Sbjct: 579 KLGCKRLILVGDPKQLPATVLSRRAIER-KYDISLFQRLQMSGQQVVMLSVQYRMHPQIS 637 Query: 107 RLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 PS FY+G + + + F S EEE G S Sbjct: 638 AFPSKHFYDGE-------LHDYKDILKTRAPVVTWQDIPIFKPFTFFSVNSEEEQ-GKSI 689 Query: 167 QNPGEAEFVVEIVEYLLRSGVPP------------------EDIGVITPYNGQVELIRNI 208 N EA+FV +I+E L E I VI+PYN QV++IR Sbjct: 690 SNLLEADFVCQILELLGLILYEHQKKLTENTDLGEPSKRWYERIAVISPYNEQVKIIRKK 749 Query: 209 LNSRCSLK-----PVEVSTVDSFQGREKDIIILSLVRS------------NRNGEIGFLR 251 + + L P++VSTVD FQG+EKD II S+VRS NR GF+ Sbjct: 750 IKEKFGLSPETICPIDVSTVDGFQGQEKDFIIFSVVRSQYIEEDSLNNADNRKTNAGFIA 809 Query: 252 DERRLNV 258 D RR+NV Sbjct: 810 DRRRINV 816 >tr:Q7XUE1_ORYSA OSJNBa0088A01.4 protein. Oryza sativa (japonica cultivar-group). Length = 813 Score = 196 bits (498), Expect = 4e-50 Identities = 89/266 (33%), Positives = 134/266 (50%), Gaps = 21/266 (7%) Query: 5 VAMTCTGAASKRKSLALEKFK-----FDVVIIDEAAQALEAECLIPLLL-AKKKFILVGD 58 + T + + ++ +++++DEAAQ E E LIP+ L K+ + +GD Sbjct: 469 ILCTVSSSYVLHNVS-MDDRSECLKPLELLVVDEAAQLKECETLIPMQLPGIKQAVFIGD 527 Query: 59 HKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNG 118 QLP +KS K + A S+FERL LG + LN+QYRM PEI + P FY+G Sbjct: 528 ECQLPALVKS-KISDNADFGRSVFERLSSLGYNKHLLNIQYRMRPEISKFPVASFYDGKI 586 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEE-EPEGYSYQNPGEAEFVVE 177 + V++ + + + P SF++ G E E G S +N E V+ Sbjct: 587 SDGPNVVSKNYKRN------ILPGKMFGPYSFINVDGGHETTEKHGRSLKNTIEVAAVLW 640 Query: 178 IVEYLLRSGVPPED---IGVITPYNGQVELIRNILNSRCSLKP---VEVSTVDSFQGREK 231 IV L V +GV++PYN QV I+ + + V+V +VD FQG E+ Sbjct: 641 IVRRLFEESVFLGSKLTVGVVSPYNAQVRAIQEKIGKTYDMYDDFSVKVKSVDGFQGAEE 700 Query: 232 DIIILSLVRSNRNGEIGFLRDERRLN 257 D+II+S VRSNR G +GFL + +R N Sbjct: 701 DVIIISTVRSNRAGSVGFLTNLQRTN 726 >tr:Q6CXV4_KLULA Similar to sp|P38859 Saccharomyces cerevisiae YHR164c DNA2 DNA helicase. Kluyveromyces lactis (Yeast). Length = 1445 Score = 195 bits (496), Expect = 6e-50 Identities = 100/272 (36%), Positives = 134/272 (49%), Gaps = 23/272 (8%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 A+VV +TC G L + FD VI+DEA+Q + PL KFILVGDH Q Sbjct: 1142 AQVVGVTCLGINDP--WLQMRNGDFDYVILDEASQVSLPVAIGPLRFGY-KFILVGDHYQ 1198 Query: 62 LPPTIKSKKAAAKAGLEESLFERL-VELGVSVVRLNVQYRMHPEICRLPSNLFYEGN--- 117 LPP +K+ A GL+ESLFE+L SVV L +QYRM+ EI L + L Y G Sbjct: 1199 LPPLVKNS-FARDNGLQESLFEKLCHSHPQSVVELQLQYRMNAEIMSLSNVLIYGGKLQC 1257 Query: 118 --GLVDISSVARRLEYD---SANPGFFPTPQFIVPLSFVD----NSGVEEEEPEGYS-YQ 167 + + Y P+ V + D S + E + Sbjct: 1258 GTDEIRRQVLQFPNNYKCSQDTWLQKAINPEQPVVILDHDGFQSTSNQQFVEQNDHGQLS 1317 Query: 168 NPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQ 227 N GEA V E+V LL G+ + IGV++ Y Q+ L++ L ++V T D FQ Sbjct: 1318 NVGEANVVNEVVRELLAHGIEVDQIGVMSMYKAQMSLLKTTLEDL----DIDVLTADQFQ 1373 Query: 228 GREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 GR+KD II+S+VRSN + G LRD RR+NV Sbjct: 1374 GRDKDCIIISMVRSNPDQASGVLLRDLRRINV 1405 >tr:Q6PED8_MOUSE Amyotrophic lateral sclerosis 4 homolog. Mus musculus (Mouse). Length = 821 Score = 195 bits (496), Expect = 7e-50 Identities = 98/276 (35%), Positives = 134/276 (48%), Gaps = 30/276 (10%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFK---FDVVIIDEAAQALEAECLIPLLLAKKKFILVG 57 E+ V+ T + + A F VI+DEA Q+ E E L PL+ K ILVG Sbjct: 298 ESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLILVG 357 Query: 58 DHKQLPPTIKSKKAAAKAGLEESLFERLVELGV-----------SVVRLNVQYRMHPEIC 106 D KQLPPT+ S KA G ++S+ R +L V++L +QYRMHP+IC Sbjct: 358 DPKQLPPTVISMKAQE-YGYDQSMMARFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDIC 416 Query: 107 RLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 PSN Y N ++ S+ F P V + G E + SY Sbjct: 417 LFPSNYVYNKN---LKTNRLTESIRCSSEWPFQPY--------LVFDVGDGSERRDNDSY 465 Query: 167 QNPGEAEFVVEIVEYL--LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPV-EVSTV 223 N E + V+EI++ + R + +IG+IT Y Q +I+ L K EV TV Sbjct: 466 INVQEIKLVMEIIKLIKEKRKDISFRNIGIITHYKAQKTMIQKDLEKEFDKKGPAEVDTV 525 Query: 224 DSFQGREKDIIILSLVR-SNRNGEIGFLRDERRLNV 258 D+FQGR+KD II++ VR S G IGFL +RLNV Sbjct: 526 DAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNV 561 >tr:Q80V90_MOUSE Als4 protein (Fragment). Mus musculus (Mouse). Length = 902 Score = 195 bits (495), Expect = 8e-50 Identities = 98/276 (35%), Positives = 134/276 (48%), Gaps = 30/276 (10%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFK---FDVVIIDEAAQALEAECLIPLLLAKKKFILVG 57 E+ V+ T + + A F VI+DEA Q+ E E L PL+ K ILVG Sbjct: 379 ESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLILVG 438 Query: 58 DHKQLPPTIKSKKAAAKAGLEESLFERLVELGV-----------SVVRLNVQYRMHPEIC 106 D KQLPPT+ S KA G ++S+ R +L V++L +QYRMHP+IC Sbjct: 439 DPKQLPPTVISMKAQE-YGYDQSMMARFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDIC 497 Query: 107 RLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 PSN Y N ++ S+ F P V + G E + SY Sbjct: 498 LFPSNYVYNKN---LKTNRLTESIRCSSEWPFQPY--------LVFDVGDGSERRDNDSY 546 Query: 167 QNPGEAEFVVEIVEYL--LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPV-EVSTV 223 N E + V+EI++ + R + +IG+IT Y Q +I+ L K EV TV Sbjct: 547 INVQEIKLVMEIIKLIKEKRKDISFRNIGIITHYKAQKTMIQKDLEKEFDKKGPAEVDTV 606 Query: 224 DSFQGREKDIIILSLVR-SNRNGEIGFLRDERRLNV 258 D+FQGR+KD II++ VR S G IGFL +RLNV Sbjct: 607 DAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNV 642 >tr:Q8LNN4_ORYSA Putative helicase. Oryza sativa (japonica cultivar-group). Length = 1361 Score = 195 bits (495), Expect = 8e-50 Identities = 93/264 (35%), Positives = 131/264 (49%), Gaps = 14/264 (5%) Query: 3 KVVAMTCTGAASKRKSLALEKFK-FDVVIIDEAAQALEAECLIPLLL-AKKKFILVGDHK 60 K + A+S + L+ +++IDEAAQ E E L+PLLL + +L+GD Sbjct: 585 KRAKLVFCTASSSFELFRLQNVMPISILVIDEAAQLKECEALVPLLLPGIEHILLIGDEN 644 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL +KS K A A SL+ERL +G L VQYRMHP I + P+ FY+ Sbjct: 645 QLSSLVKS-KIAKDADFGRSLYERLCTMGYRKHLLEVQYRMHPGINKFPNANFYDNRIS- 702 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 D SV + S PG P + + +E + G S +N E IVE Sbjct: 703 DGPSVQQEDYMKSYLPG----PIYGAYSFIHIENDMEMLDELGQSSKNMVEVAVATNIVE 758 Query: 181 YLLRSGVPPE---DIGVITPYNGQVELIRNILNSRCSLKP---VEVSTVDSFQGREKDII 234 L + +GVI+PY QV ++ L + V V ++D FQG E+DII Sbjct: 759 RLAKECSEKRQRTSLGVISPYTAQVIALQERLGKQFKNHEFLSVTVKSIDGFQGGEEDII 818 Query: 235 ILSLVRSNRNGEIGFLRDERRLNV 258 ++S VRSN+NG++GFL D R+NV Sbjct: 819 LISTVRSNKNGKVGFLSDAGRINV 842 >tr:Q7XN16_ORYSA OSJNBb0016D16.17 protein. Oryza sativa (Rice). Length = 1287 Score = 195 bits (495), Expect = 9e-50 Identities = 95/267 (35%), Positives = 132/267 (49%), Gaps = 20/267 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 + +VV +TC G L KFD I+DEA Q L PL+LA KF+LVGDH Sbjct: 973 QVQVVGVTCLGIYHPL----LAHKKFDTCIMDEAGQITLPVSLGPLMLAT-KFVLVGDHY 1027 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVR-LNVQYRMHPEICRLPSNLFYEGN-G 118 QLPP ++S +A G+ SLF RL E + L QYRM I L ++L Y Sbjct: 1028 QLPPLVQSSEAREN-GMGVSLFWRLSEAHPQAISALRCQYRMSSGIMELSNSLIYGNRLS 1086 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFIVP---LSFVDNSGVEEEEPEGY-SYQNPGEAEF 174 + +L+ P + + P + F + V E + + + NP EA Sbjct: 1087 CGSLEIANAKLKLSGRGPVRLKLKEILNPDRAVVFANTDEVPAFEAKEHRTVNNPTEALI 1146 Query: 175 VVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDII 234 V I LL+ GV + +G+ITPYN Q LI+ +++ VEV T+D +QGR+K+ I Sbjct: 1147 VSWITNELLKRGVAQDGVGIITPYNAQANLIQQHVDAS-----VEVHTIDKYQGRDKECI 1201 Query: 235 ILSLVRSNRN---GEIGFLRDERRLNV 258 I+S VRSN N L D R+NV Sbjct: 1202 IVSFVRSNGNTRASGSSLLGDWHRINV 1228 >tr:Q72RC7_LEPIC Hypothetical protein. Leptospira interrogans (serogroup Icterohaemorrhagiae / serovar Copenhageni). Length = 634 Score = 194 bits (494), Expect = 1e-49 Identities = 100/257 (38%), Positives = 135/257 (52%), Gaps = 14/257 (5%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 V ++ A+++ LE FD ++DE++QALE IP+L + + IL GDHKQL Sbjct: 348 HPVIVSTPVASARG---ILENRTFDFCVLDESSQALEPAFWIPILKSD-RVILAGDHKQL 403 Query: 63 PPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDI 122 PPT+ S+K + L E E L EL V L+ QYRM EI PS FY G + Sbjct: 404 PPTLFSEKNYLETTLFEKAVENL-ELYGRVFLLDTQYRMKDEISAFPSKEFYSG----LL 458 Query: 123 SSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPE-GYSYQNPGEAEFVVEIVEY 181 S E S P FP F+ ++D SG + EE S NP EA+ V + Sbjct: 459 KSGRSEKERKSNFPKTFP---FLNAFQWIDTSGTDSEEVILDDSISNPFEADLQVRLCFL 515 Query: 182 LLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRS 241 L + P ++I +++PY QV LI L L + VST+DSFQGRE I+L VRS Sbjct: 516 LKENDWPEDEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDSFQGRENRCILLGFVRS 574 Query: 242 NRNGEIGFLRDERRLNV 258 N G GFL++ RR+NV Sbjct: 575 NLEGRSGFLKESRRINV 591 >tr:Q8F4E3_LEPIN Putative helicase. Leptospira interrogans. Length = 634 Score = 193 bits (492), Expect = 2e-49 Identities = 99/257 (38%), Positives = 134/257 (52%), Gaps = 14/257 (5%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 V ++ A+++ LE FD ++DE++QALE IP+L + + IL GDHKQL Sbjct: 348 HPVIVSTPVASARG---ILENRTFDFCVLDESSQALEPAFWIPILKSD-RVILAGDHKQL 403 Query: 63 PPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDI 122 PPT+ S+K + L E E L G V L+ QYRM EI PS FY G + Sbjct: 404 PPTLFSEKNYLETTLFEKAVENLESYG-RVFLLDTQYRMKDEISAFPSKEFYSG----LL 458 Query: 123 SSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPE-GYSYQNPGEAEFVVEIVEY 181 S E S P FP F+ ++D SG + EE S NP EA+ V + Sbjct: 459 KSGRSEKERKSNFPKTFP---FLNAFQWIDTSGTDSEEVILDDSISNPFEADLQVRLCFL 515 Query: 182 LLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRS 241 L + P ++I +++PY QV LI L L + VST+DSFQGRE I+L VRS Sbjct: 516 LKENDWPEDEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDSFQGRENRCILLGFVRS 574 Query: 242 NRNGEIGFLRDERRLNV 258 N G GFL++ RR+NV Sbjct: 575 NLEGRSGFLKESRRINV 591 >tr:Q8IBF7_PLAF7 Regulator of nonsense transcripts 1 homologue, putative. Plasmodium falciparum (isolate 3D7). Length = 1578 Score = 193 bits (492), Expect = 2e-49 Identities = 100/264 (37%), Positives = 139/264 (52%), Gaps = 19/264 (7%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 VV TC G+ + + KF+ VIIDE AQ++E LIPL +L+GDHKQLP Sbjct: 1197 VVIATCVGSGHE----IFDNEKFERVIIDECAQSIEPSNLIPLGHYCNNLVLIGDHKQLP 1252 Query: 64 PTIKSKKAAAKAGLEESLFERLV-ELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDI 122 PTI S A K GL++SL ER V V LN Q RMH IC P+ FY+ Sbjct: 1253 PTIISPDA-IKLGLDKSLLERFVMAKIAPVHLLNTQRRMHLSICVFPNFHFYDNK----- 1306 Query: 123 SSVARRLEYDSANPGFFPTPQFIVPLSFVDNS----GVEEEEPEGYSYQNPGEAEFVVEI 178 A E + F P L+F+D S G + E G S N E E ++ + Sbjct: 1307 LKTANVTEENRPIIKGFLWPNPKCRLAFIDVSIGKPGSKFENAYGTSKFNLYEIEPLITV 1366 Query: 179 VEYLL-RSGVPPEDIGVITPYNGQVELIRNILNSRCSL---KPVEVSTVDSFQGREKDII 234 ++ ++ V ++IG++T Y+ Q ++ + S +E+ ++D FQG+EKD+I Sbjct: 1367 LKSIINEGCVSVDEIGILTAYDAQKMKLKKAVQDAFSYEASHRIEIDSIDGFQGKEKDLI 1426 Query: 235 ILSLVRSNRNGEIGFLRDERRLNV 258 + S VRSN N E+GFLRD RRLNV Sbjct: 1427 LFSAVRSNANNELGFLRDARRLNV 1450 >tr:Q6M931_NEUCR Related to DNA helicase. Neurospora crassa. Length = 1735 Score = 193 bits (490), Expect = 3e-49 Identities = 94/313 (30%), Positives = 140/313 (44%), Gaps = 64/313 (20%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 +VA TC G + FD I+DEA+Q CL P+ +A +KF+LVGDH QLP Sbjct: 1231 IVATTCLGINHP----VFAERIFDYCIVDEASQITLPICLGPIRMA-RKFVLVGDHNQLP 1285 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGV-SVVRLNVQYRMHPEICRLPSNLFYEGN----- 117 P +++++A GL+ SLF+ L E SVV L QYRM +I L + L Y G Sbjct: 1286 PLVQNEEA-RLGGLDVSLFKLLSEKHPQSVVNLEHQYRMCEDIMTLSNTLIYNGRLKCGT 1344 Query: 118 ----------------------GLVDISSVARRLEYDSANPGFFPTPQF----------- 144 ++ + + F P+P Sbjct: 1345 EALRTTSLEIPDMDALATKHFDADSFLAHSQQHPLKEGDKLSFCPSPTPTTCWLRDLLDP 1404 Query: 145 -----IVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYN 199 + + EE+ G NP E+ V ++V+ LL GVP +IGV+T Y Sbjct: 1405 SARVRFINTDSLLPHSREEKSTRGQRIVNPLESRIVCQLVDSLLTVGVPASEIGVMTHYR 1464 Query: 200 GQVELIRNILNSRCSL-------------KPVEVSTVDSFQGREKDIIILSLVRSNRNGE 246 Q+ L+++ + + + +E+ T D FQGR+K +++LSLVRSN Sbjct: 1465 SQLALLKHNMKNTLGGSAGAIRAGVKVAAEEIEMHTADRFQGRDKSVVVLSLVRSNEGCS 1524 Query: 247 IG-FLRDERRLNV 258 IG L+D RR+NV Sbjct: 1525 IGELLKDWRRINV 1537 >tr:Q7S6A4_NEUCR Hypothetical protein. Neurospora crassa. Length = 1727 Score = 193 bits (490), Expect = 3e-49 Identities = 94/313 (30%), Positives = 140/313 (44%), Gaps = 64/313 (20%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 +VA TC G + FD I+DEA+Q CL P+ +A +KF+LVGDH QLP Sbjct: 1223 IVATTCLGINHP----VFAERIFDYCIVDEASQITLPICLGPIRMA-RKFVLVGDHNQLP 1277 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGV-SVVRLNVQYRMHPEICRLPSNLFYEGN----- 117 P +++++A GL+ SLF+ L E SVV L QYRM +I L + L Y G Sbjct: 1278 PLVQNEEA-RLGGLDVSLFKLLSEKHPQSVVNLEHQYRMCEDIMTLSNTLIYNGRLKCGT 1336 Query: 118 ----------------------GLVDISSVARRLEYDSANPGFFPTPQF----------- 144 ++ + + F P+P Sbjct: 1337 EALRTTSLEIPDMDALATKHFDADSFLAHSQQHPLKEGDKLSFCPSPTPTTCWLRDLLDP 1396 Query: 145 -----IVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYN 199 + + EE+ G NP E+ V ++V+ LL GVP +IGV+T Y Sbjct: 1397 SARVRFINTDSLLPHSREEKSTRGQRIVNPLESRIVCQLVDSLLTVGVPASEIGVMTHYR 1456 Query: 200 GQVELIRNILNSRCSL-------------KPVEVSTVDSFQGREKDIIILSLVRSNRNGE 246 Q+ L+++ + + + +E+ T D FQGR+K +++LSLVRSN Sbjct: 1457 SQLALLKHNMKNTLGGSAGAIRAGVKVAAEEIEMHTADRFQGRDKSVVVLSLVRSNEGCS 1516 Query: 247 IG-FLRDERRLNV 258 IG L+D RR+NV Sbjct: 1517 IGELLKDWRRINV 1529 >tr:Q5CGV2_9CRYT SEN1 protein. Cryptosporidium hominis. Length = 994 Score = 193 bits (490), Expect = 3e-49 Identities = 110/307 (35%), Positives = 147/307 (47%), Gaps = 58/307 (18%) Query: 1 EAKVVAMTCTGAASKRKSLALEKF--------------KFDVVIIDEAAQALEAECLIPL 46 E+++V T + SK L + FD VIIDEA+Q +E LIPL Sbjct: 519 ESQIVCATLSVCGSKELISILSQNGRMQAAGSGDRTALSFDTVIIDEASQGVELSTLIPL 578 Query: 47 LLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEIC 106 L K+ ILVGD KQLP T+ S++A + + SLF+RL G VV L+VQYRMHP+I Sbjct: 579 KLGCKRLILVGDPKQLPATVLSRRAIER-KYDISLFQRLQMSGQQVVMLSVQYRMHPQIS 637 Query: 107 RLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 PS FY+G + R + P +F + EE+ G S Sbjct: 638 AFPSKHFYDGELHDYKDILETRAPVVAWQDIPI-----FKPFTFFSVNSEEEQ---GKSI 689 Query: 167 QNPGEAEFVVEIVEYLLRSGVPP------------------EDIGVITPYNGQVELIRNI 208 NP EA+FV +I+E L E I VI+PYN QV++IR Sbjct: 690 SNPLEADFVCQILELLGLILYEHQKKLTENTDLGEPSKRWYERIAVISPYNEQVKIIRKK 749 Query: 209 LNSRCSLK-----PVEVSTVDSFQGREKDIIILSLVRS------------NRNGEIGFLR 251 + + L P++VSTVD FQG+EKD II S+VRS +R GF+ Sbjct: 750 IKEKFGLSPETICPIDVSTVDGFQGQEKDFIIFSVVRSQYIEEDSLNNADDRKTNAGFIA 809 Query: 252 DERRLNV 258 D RR+NV Sbjct: 810 DRRRINV 816 >tr:O28319_ARCFU DNA helicase, putative. Archaeoglobus fulgidus. Length = 453 Score = 192 bits (488), Expect = 5e-49 Identities = 82/256 (32%), Positives = 114/256 (44%), Gaps = 15/256 (5%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 + + K AL+ + FD VIIDEA+ + L+ L A+ K ++VGD QL Sbjct: 171 RKGKIVVGSTILKGMMSALKNYDFDTVIIDEASNTCISTALLALEKAE-KAVVVGDPYQL 229 Query: 63 PPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDI 122 PP + A A F L+ + + L YR + +I + Y G ++I Sbjct: 230 PPVYEVGGHKA-AKFSAYNF--LINIYGKNLWLRRHYRSNAKIAEFAARHVY---GFLEI 283 Query: 123 SSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYL 182 RR++ + V E EG S N EAE V I E L Sbjct: 284 DEKCRRIKIEP--CKTTIPEVGDPEKPLVFIDCNGVERREGRSKVNEEEAEVVAMIAEEL 341 Query: 183 LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSN 242 V E++GVITPY Q ELIR IL+ VEVSTV S+QGREKD++I S+ + Sbjct: 342 A-ECVGEENVGVITPYVKQAELIRGILSE--FGVMVEVSTVHSYQGREKDVVIYSITATG 398 Query: 243 RNGEIGFLRDERRLNV 258 F ++R NV Sbjct: 399 NPY---FASEKRLFNV 411 >tr:Q8IC35_PLAF7 Erythrocyte membrane-associated antigen. Plasmodium falciparum (isolate 3D7). Length = 2283 Score = 191 bits (487), Expect = 6e-49 Identities = 100/264 (37%), Positives = 139/264 (52%), Gaps = 19/264 (7%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 VV TC G+ + + KF+ VIIDE AQ++E LIPL +L+GDHKQLP Sbjct: 1902 VVIATCVGSGHE----IFDNEKFERVIIDECAQSIEPSNLIPLGHYCNNLVLIGDHKQLP 1957 Query: 64 PTIKSKKAAAKAGLEESLFERLV-ELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDI 122 PTI S A K GL++SL ER V V LN Q RMH IC P+ FY+ Sbjct: 1958 PTIISPDA-IKLGLDKSLLERFVMAKIAPVHLLNTQRRMHLSICVFPNFHFYDNK----- 2011 Query: 123 SSVARRLEYDSANPGFFPTPQFIVPLSFVDNS----GVEEEEPEGYSYQNPGEAEFVVEI 178 A E + F P L+F+D S G + E G S N E E ++ + Sbjct: 2012 LKTANVTEENRPIIKGFLWPNPKCRLAFIDVSIGKPGSKFENAYGTSKFNLYEIEPLITV 2071 Query: 179 VEYLL-RSGVPPEDIGVITPYNGQVELIRNILNSRCSL---KPVEVSTVDSFQGREKDII 234 ++ ++ V ++IG++T Y+ Q ++ + S +E+ ++D FQG+EKD+I Sbjct: 2072 LKSIINEGCVSVDEIGILTAYDAQKMKLKKAVQDAFSYEASHRIEIDSIDGFQGKEKDLI 2131 Query: 235 ILSLVRSNRNGEIGFLRDERRLNV 258 + S VRSN N E+GFLRD RRLNV Sbjct: 2132 LFSAVRSNANNELGFLRDARRLNV 2155 >tr:Q516U5_ENTHI Regulator of nonsense transcripts, putative. Entamoeba histolytica HM-1:IMSS. Length = 958 Score = 191 bits (487), Expect = 7e-49 Identities = 91/250 (36%), Positives = 133/250 (53%), Gaps = 13/250 (5%) Query: 10 TGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSK 69 + L K KF I+DEAAQ+LE E L ++ +K +L+GD +QL PT S Sbjct: 630 CSTLTICTRPTLLKQKFFASIVDEAAQSLEPETLAGII-NVRKAVLIGDIQQLQPTCLST 688 Query: 70 KAAAKAGLEESLFERLVEL-GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARR 128 +A +AG ++S+FER + + L QYRMHP I + +FY +SS R Sbjct: 689 EA-REAGFQKSMFERFMANTQIKRTMLKTQYRMHPAISEFSNKMFYSSKLENGVSSKDRF 747 Query: 129 LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVP 188 FFP P+ F++ G E+ G SY N GE + + E+VE LL + + Sbjct: 748 DNRII---NFFPDYT--NPIMFINCDGTEQYGSSGTSYNNAGEVQIIQEVVEKLLNNDIE 802 Query: 189 PEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIG 248 +IG+I+PY Q ELI ++ ++V+ +D FQG EK+ II S VRSN+ +G Sbjct: 803 ENEIGIISPYQAQQELISQYVS-----TKIKVANIDGFQGNEKEYIIFSCVRSNQTLGVG 857 Query: 249 FLRDERRLNV 258 F+ D +RLNV Sbjct: 858 FVNDYKRLNV 867 >tr:Q6LWX3_METMP Putative DNA helicase. Methanococcus maripaludis. Length = 633 Score = 191 bits (486), Expect = 8e-49 Identities = 93/258 (36%), Positives = 142/258 (55%), Gaps = 22/258 (8%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 VV T + A S+ LE +KFD+ +IDE +Q+ E LIP++ + +K I+ GDHKQL Sbjct: 361 DVVVATNSMAGSE----ILEDYKFDIAVIDEGSQSTEPSSLIPIVRS-RKLIIAGDHKQL 415 Query: 63 PPTIKSKKAAAKAGLEESLFERLV-ELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVD 121 PPT+ S + L+++LFER++ E L VQYRM+ +I + +FYE L+ Sbjct: 416 PPTVLSDELE----LKKTLFERMIQEHPEFSKILQVQYRMNEKIMEFSNEMFYENK-LIA 470 Query: 122 ISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEG-YSYQNPGEAEFVVEIVE 180 SV + + I + EE+ S N EAE V+EIV Sbjct: 471 HESVKSQNLLEIVENVSNEDKDIINEKPLQFINVDGEEKQNSFKSSYNVEEAEKVLEIVS 530 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVR 240 L + +P + VITPY+ QV+ I +LN+ ++V +VD FQGRE ++I++S VR Sbjct: 531 KLQKYEIP---VSVITPYDAQVKYISKMLNT----DKIDVKSVDGFQGRENEVIVISFVR 583 Query: 241 SNRNGEIGFLRDERRLNV 258 ++ ++GFL+D +RLNV Sbjct: 584 TS---KMGFLKDLKRLNV 598 >tr:Q89BQ9_BRAJA Bll8089 protein. Bradyrhizobium japonicum. Length = 1731 Score = 191 bits (485), Expect = 1e-48 Identities = 65/286 (22%), Positives = 105/286 (36%), Gaps = 49/286 (17%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 S + L + FD++++DEA+Q + L +L K+ ++VGD +Q Sbjct: 1304 RSYTPCVMMSPMSVAQYLEPGRHSFDLLVVDEASQMRPEDALGAMLRC-KQAVIVGDPEQ 1362 Query: 62 LPPTIKSKKAAAKAGL------EESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYE 115 LPPT + + EES+ E + L V YR + SN + Sbjct: 1363 LPPTDFFSASDDPSDEKAEDAPEESILELGRRCWHPMRMLEVHYRSRHQSLIAYSNREFY 1422 Query: 116 GNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFV 175 G L+ S +S G E +NP EA + Sbjct: 1423 GERLLVYPSP--------------VLEDPDFGVSCRKVDGAYEVGQG----RNPAEARAI 1464 Query: 176 VEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC---------------SLKPVEV 220 VE L+R IG++ Q +LI +++ R +L+ V Sbjct: 1465 VEEAAQLMR-TRADRSIGIVAMNQAQRDLIETLMDERATTDQDVQAYREKWADNLEDFFV 1523 Query: 221 STVDSFQGREKDIIILSLVRSN--------RNGEIGFLRDERRLNV 258 +++ QG E+D+I++S V R G + RRLNV Sbjct: 1524 KNLENVQGDERDVILISTVYGPTAEGVFHQRFGPLNRAYGHRRLNV 1569 >tr:Q50YA3_ENTHI Regulator of nonsense transcripts, putative. Entamoeba histolytica HM-1:IMSS. Length = 927 Score = 190 bits (483), Expect = 2e-48 Identities = 93/250 (37%), Positives = 133/250 (53%), Gaps = 13/250 (5%) Query: 10 TGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSK 69 S L K KF I+DEAAQ+LE E L ++ +K +L+GD +QL PT S Sbjct: 545 CSTLSLCTRPTLLKQKFFASIVDEAAQSLEPETLAGIINVRKT-VLIGDIQQLQPTCLST 603 Query: 70 KAAAKAGLEESLFERLVEL-GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARR 128 +A +AG ++S+FER + + L QYRMHP I + +FY +SS R Sbjct: 604 EA-REAGFQKSMFERFMANTQIKRTMLKTQYRMHPAISEFSNKMFYSSKLENGVSSKDRF 662 Query: 129 LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVP 188 D FFP P+ F++ G E G SY N GE + + E+VE LL + + Sbjct: 663 ---DDRIINFFPDYT--NPIMFINCDGTEHYGSSGTSYNNAGEVQIIQEVVEKLLNNDIE 717 Query: 189 PEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIG 248 +IG+I+PY Q ELI ++ ++V+ +D FQG EK+ II S VRSN+ +G Sbjct: 718 ENEIGIISPYQAQQELISQYVS-----TKIKVANIDGFQGNEKEYIIFSCVRSNQTLGVG 772 Query: 249 FLRDERRLNV 258 F+ D +RLNV Sbjct: 773 FVNDYKRLNV 782 >tr:Q50YI5_ENTHI Regulator of nonsense transcripts, putative. Entamoeba histolytica HM-1:IMSS. Length = 931 Score = 190 bits (483), Expect = 2e-48 Identities = 93/250 (37%), Positives = 133/250 (53%), Gaps = 13/250 (5%) Query: 10 TGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSK 69 S L K KF I+DEAAQ+LE E L ++ +K +L+GD +QL PT S Sbjct: 549 CSTLSLCTRPTLLKQKFFASIVDEAAQSLEPETLAGIINVRKT-VLIGDIQQLQPTCLST 607 Query: 70 KAAAKAGLEESLFERLVEL-GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARR 128 +A +AG ++S+FER + + L QYRMHP I + +FY +SS R Sbjct: 608 EA-REAGFQKSMFERFMANTQIKRTMLKTQYRMHPAISEFSNKMFYSSKLENGVSSKDRF 666 Query: 129 LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVP 188 D FFP P+ F++ G E G SY N GE + + E+VE LL + + Sbjct: 667 ---DDRIINFFPDYT--NPIMFINCDGTEHYGSSGTSYNNAGEVQIIQEVVEKLLNNDIE 721 Query: 189 PEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIG 248 +IG+I+PY Q ELI ++ ++V+ +D FQG EK+ II S VRSN+ +G Sbjct: 722 ENEIGIISPYQAQQELISQYVS-----TKIKVANIDGFQGNEKEYIIFSCVRSNQTLGVG 776 Query: 249 FLRDERRLNV 258 F+ D +RLNV Sbjct: 777 FVNDYKRLNV 786 >tr:Q7RRN6_PLAYO Nam7 protein (Fragment). Plasmodium yoelii yoelii. Length = 1791 Score = 189 bits (481), Expect = 3e-48 Identities = 97/264 (36%), Positives = 137/264 (51%), Gaps = 19/264 (7%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 VV TC G+ + + KF+ VIIDE AQ++E LIPL +L+GDHKQLP Sbjct: 1411 VVIATCVGSGHE----IFDNEKFERVIIDECAQSIEPSNLIPLGHYCTNLVLIGDHKQLP 1466 Query: 64 PTIKSKKAAAKAGLEESLFERLV-ELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDI 122 PTI S A K GL++SL ER V + L+ Q RMH IC P+ FY+ Sbjct: 1467 PTIISPDA-IKLGLDKSLLERFVMAKIAPIHLLSTQRRMHLSICTFPNFHFYDNK----- 1520 Query: 123 SSVARRLEYDSANPGFFPTPQFIVPLSFVDNS----GVEEEEPEGYSYQNPGEAEFVVEI 178 A E + F P L F+D S G + E G S N E E ++ + Sbjct: 1521 LKTANVTEENRPIIKGFLWPNPKCRLVFIDVSLGKPGSKFENAYGTSKFNLYEIEPLIAV 1580 Query: 179 VEYLL-RSGVPPEDIGVITPYNGQVELIRNILNSRCSL---KPVEVSTVDSFQGREKDII 234 ++ ++ V ++IG++T Y+ Q ++ + +E+ ++D FQG+EKD+I Sbjct: 1581 LKSIVNEGCVSVDEIGILTAYDAQKIKLKKAVQETFPYEAAHRIEIDSIDGFQGKEKDLI 1640 Query: 235 ILSLVRSNRNGEIGFLRDERRLNV 258 + S VRSN N E+GFLRD RRLNV Sbjct: 1641 LFSAVRSNANNELGFLRDARRLNV 1664 >tr:Q7F941_ORYSA OSJNBb0088C09.17 protein. Oryza sativa (japonica cultivar-group). Length = 770 Score = 189 bits (481), Expect = 4e-48 Identities = 92/264 (34%), Positives = 119/264 (45%), Gaps = 42/264 (15%) Query: 6 AMTCTGAASKRKSLALEK--FKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 A S S + FDVVIIDEAAQA VGD QLP Sbjct: 427 AAIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQA------------------VGDPVQLP 468 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS 123 T+ S A G SLF+R G V L +QYRMHPEI PS FYEG Sbjct: 469 ATVISSTAQKL-GYGTSLFKRFQAAGFPVQMLKIQYRMHPEISIFPSKEFYEG------- 520 Query: 124 SVARRLEYDSANPGFFPTPQF--IVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 LE P + P F D G E + S+ N E EF+ + Sbjct: 521 ----VLEDGEGLSKKRPWHSYSCFGPFCFFDVDGTESQPSGSGSWVNEDEVEFITLLYHQ 576 Query: 182 LLRSGVPP----EDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGREKDII 234 + P + VI+PY QV+L+++ S S + ++V+TVD FQGREK+++ Sbjct: 577 MAMR-YPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQSKEVIDVNTVDGFQGREKEVV 635 Query: 235 ILSLVRSNRNGEIGFLRDERRLNV 258 I S VR N+ +IGF+ D RR+NV Sbjct: 636 IFSCVRCNKEQKIGFVSDFRRMNV 659 >tr:Q7X684_ORYSA OSJNBa0035I04.7 protein. Oryza sativa (Rice). Length = 744 Score = 189 bits (480), Expect = 4e-48 Identities = 92/264 (34%), Positives = 119/264 (45%), Gaps = 42/264 (15%) Query: 6 AMTCTGAASKRKSLALEK--FKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 A S S + FDVVIIDEAAQA VGD QLP Sbjct: 401 AAIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQA------------------VGDPVQLP 442 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS 123 T+ S A G SLF+R G V L +QYRMHPEI PS FYEG Sbjct: 443 ATVISSTAQKL-GYGTSLFKRFQAAGFPVQMLKIQYRMHPEISIFPSKEFYEG------- 494 Query: 124 SVARRLEYDSANPGFFPTPQF--IVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 LE P + P F D G E + S+ N E EF+ + Sbjct: 495 ----VLEDGEGLSKKRPWHSYSCFGPFCFFDVDGTESQPSGSGSWVNEDEVEFITLLYHQ 550 Query: 182 LLRSGVPP----EDIGVITPYNGQVELIRNILNSRC---SLKPVEVSTVDSFQGREKDII 234 + P + VI+PY QV+L+++ S S + ++V+TVD FQGREK+++ Sbjct: 551 MAMR-YPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQSKEVIDVNTVDGFQGREKEVV 609 Query: 235 ILSLVRSNRNGEIGFLRDERRLNV 258 I S VR N+ +IGF+ D RR+NV Sbjct: 610 IFSCVRCNKEQKIGFVSDFRRMNV 633 >tr:Q517K4_ENTHI Regulator of nonsense transcripts, putative. Entamoeba histolytica HM-1:IMSS. Length = 890 Score = 189 bits (480), Expect = 5e-48 Identities = 91/239 (38%), Positives = 132/239 (55%), Gaps = 13/239 (5%) Query: 21 LEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K KF I+DEAAQ+LE E L ++ +K +L+GD +QL PT S +A +AG ++S Sbjct: 552 MLKQKFFASIVDEAAQSLEPETLAGIINVRKT-VLIGDIQQLQPTCLSTEA-REAGFQKS 609 Query: 81 LFERLVEL-GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFF 139 +FER + + L QYRMHP I + +FY +SS R D FF Sbjct: 610 MFERFMANTQIKRTMLKTQYRMHPAISEFSNKMFYSSKLENGVSSDDRF---DDRIINFF 666 Query: 140 PTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYN 199 P P+ F++ G E G SY N GE + + E+VE LL + + +IG+I+PY Sbjct: 667 PDYT--NPIMFINCDGTEHYGSSGTSYNNAGEVQIIQEVVEKLLNNDIEENEIGIISPYQ 724 Query: 200 GQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 Q ELI ++ ++V+ +D FQG EK+ II S VRSN+ +GF+ D +RLNV Sbjct: 725 AQQELISQYVS-----TKIKVANIDGFQGNEKEYIIFSCVRSNQTLGVGFVNDYKRLNV 778 >tr:Q6BNH2_DEBHA Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii. Debaryomyces hansenii (Yeast) (Torulaspora hansenii). Length = 1124 Score = 188 bits (477), Expect = 1e-47 Identities = 105/298 (35%), Positives = 139/298 (46%), Gaps = 60/298 (20%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL-AKKKFILVGDH 59 +AKV+ T A + K VVI+DEA Q+ E LIPL + +KF+ VGD Sbjct: 801 QAKVIFTTTVVAGGNQLKSVK---KLPVVIMDEATQSSEPTTLIPLSVPGVQKFVFVGDQ 857 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELG--VSVVRLNVQYRMHPEICRLPSNLFYEGN 117 KQL + L SLFER++ G + L+ QYRMHP I P N FY G+ Sbjct: 858 KQLSSFSQV------PNLSLSLFERVLLNGTYRTPHMLDTQYRMHPMISEFPRNRFY-GS 910 Query: 118 GLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEP--------EGYSYQNP 169 L D + R P+ F D G +EE GY+Y N Sbjct: 911 LLKDGITAEDR----------ILEGIPSNPVYFWDTCGTAQEERVRINFREDRGYTYSNR 960 Query: 170 GEAEFVVEIVEYLL-RSGVPPEDIGVITPYNGQVELIRNILNSR---------------- 212 E ++ ++V L+ G+P +IG+ITPY GQ +LI +IL Sbjct: 961 SEISYITKVVLNLIYDKGIPKSEIGIITPYRGQRDLISSILVKNDLINPEKNDILVEVDR 1020 Query: 213 ----CSLKPVEVSTV--------DSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 KPV + TV D+FQGREK+ +I+S VRSN+ IGFL DERRLNV Sbjct: 1021 DDIYNESKPVTIHTVSEIMIASIDAFQGREKNFLIMSCVRSNKESNIGFLGDERRLNV 1078 >tr:Q8A613_BACTN Putative helicase. Bacteroides thetaiotaomicron. Length = 652 Score = 187 bits (476), Expect = 1e-47 Identities = 101/269 (37%), Positives = 142/269 (52%), Gaps = 26/269 (9%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A+V+A T + + L +F + IDEAAQALEA C I + A + IL GDH Sbjct: 361 SARVIASTLVSSNHRL----LNGRRFPTLFIDEAAQALEAACWIAIRKAD-RVILAGDHC 415 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVV-RLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPPTIK +AA GL+ +L E++V+ S V L VQYRMH I R PS FY G Sbjct: 416 QLPPTIKCIEAAR-GGLDHTLMEKVVQQKPSAVSLLKVQYRMHEAIMRFPSEWFYNGELE 474 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 R + + T + FV E + N EA +++ + Sbjct: 475 AAPEVRNRGILDFDTPMNWIDTSEMDFHEEFV---------GESFGRINKQEANLLLQEL 525 Query: 180 E-YLLRSG---VPPEDI--GVITPYNGQVELIRNILNSRCSLKPVE----VSTVDSFQGR 229 E Y+ R G + E I G+I+PY QV+ +R+ + L+P V+TVD FQG+ Sbjct: 526 EAYISRIGKARILDESIDFGLISPYKAQVQYLRSKIRGSSFLRPFRSLITVNTVDGFQGQ 585 Query: 230 EKDIIILSLVRSNRNGEIGFLRDERRLNV 258 E+D++ +SLVR+N +G+IGFL D RR+NV Sbjct: 586 ERDVVFISLVRANEDGQIGFLNDLRRMNV 614 >tr:Q74ZU0_ASHGO AGR108Cp. Ashbya gossypii (Yeast) (Eremothecium gossypii). Length = 653 Score = 186 bits (474), Expect = 2e-47 Identities = 98/276 (35%), Positives = 132/276 (47%), Gaps = 34/276 (12%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK-KKFILVGDH 59 +A V+ T A R L + VI+DEA QA EA L+PL LA +K +LVGD Sbjct: 349 DANVLLATNISAG-NRSIRKLPEV--PTVIMDEATQATEASTLVPLALAGIQKLVLVGDE 405 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLFYEGN 117 KQLPP S+ + SLF R+V + L +QYRMHP IC P+ FY+ Sbjct: 406 KQLPPFALSR------NPKTSLFNRVVTRSPAEDLQFLKIQYRMHPAICEFPNMQFYDNR 459 Query: 118 GLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVE 177 D + G FI S + G + S+ N EA+FV Sbjct: 460 ------LRNGVTPEDRSWLGVQEPVVFIDIPSSAERRGQAAASQD-MSWCNLAEADFVCA 512 Query: 178 IVEYLLRSG-VPPEDIGVITPYNGQVELIRNILNSRCSL--------------KPVEVST 222 + L+ VPP IGVITPY Q + I + L +L K + V++ Sbjct: 513 TLRKLVSKKHVPPSQIGVITPYVAQRDAIASRLARDTTLAAHVTMHEVADPDSKQLMVAS 572 Query: 223 VDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 VD+FQG E+ II S VRSN +G++GF+ D RR+NV Sbjct: 573 VDAFQGHERAFIIFSCVRSNSDGQLGFVSDRRRMNV 608 >tr:Q64PT3_BACFR Putative helicase. Bacteroides fragilis. Length = 634 Score = 186 bits (473), Expect = 3e-47 Identities = 100/269 (37%), Positives = 139/269 (51%), Gaps = 26/269 (9%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A+V+A T + + L +F + IDEAAQALEA C I + A + I GDH Sbjct: 343 GARVIASTLVSSNHR----ILTGRRFTTLFIDEAAQALEAACWIAIRKAD-RVIFAGDHC 397 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLV-ELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPPTIK +AA GLE++L E++ +V L VQYRMH I + S FY+G L Sbjct: 398 QLPPTIKCIEAARN-GLEQTLMEKVAANKQETVSLLKVQYRMHQSIMQFSSEWFYQG-EL 455 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 V R D P + + EE E + N EA +++ + Sbjct: 456 QAAPEVTNRGILDLDLPMSWIDTSEMEF--------HEEFIGESFGRINKPEANLLLQEL 507 Query: 180 E-YLLRSG---VPPEDI--GVITPYNGQVELIRNILNS----RCSLKPVEVSTVDSFQGR 229 E Y+ + G V E I G+I+PY QV+ +R L R + + TVD FQG+ Sbjct: 508 EAYIRKIGEKRVLEERIDFGLISPYKAQVQYLRGKLKGCSFFRPFRSQITIHTVDGFQGQ 567 Query: 230 EKDIIILSLVRSNRNGEIGFLRDERRLNV 258 E+D+I +SLVR+N +G+IGFL D RR+NV Sbjct: 568 ERDVIFISLVRANEDGQIGFLNDLRRMNV 596 >tr:Q5ZKG3_CHICK Hypothetical protein. Gallus gallus (Chicken). Length = 992 Score = 186 bits (473), Expect = 3e-47 Identities = 88/256 (34%), Positives = 131/256 (51%), Gaps = 25/256 (9%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 VVA C G + +FD I+DEA+Q + CL PL K+F+LVGDH+QLP Sbjct: 707 VVATACMGINHP----IFVQKQFDFCIVDEASQISQPICLGPL-FCSKRFVLVGDHQQLP 761 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS 123 P +++ +A G+ ESLF+RL + +VV+L VQYRM+ +I L + L YEG Sbjct: 762 PLVQNSEARDL-GMSESLFKRLEQNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKLECGSE 820 Query: 124 SVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLL 183 V +AN + + E + + N +A Sbjct: 821 KV----SNATANLPNLKMLKLEFADASKTWLKEVLEPDKPVCFLNTEKA----------- 865 Query: 184 RSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNR 243 G P DIG+I+PY Q+++I +++ VEV+T+D +QGR+K III+S VR++ Sbjct: 866 --GCRPSDIGIISPYRHQLKVITDLMARLKEN-RVEVNTIDKYQGRDKSIIIVSFVRNSN 922 Query: 244 NGEIG-FLRDERRLNV 258 + +G L D RRLNV Sbjct: 923 DENLGALLEDWRRLNV 938 >tr:Q8EA89_SHEON Hypothetical protein SO4019. Shewanella oneidensis. Length = 907 Score = 185 bits (471), Expect = 5e-47 Identities = 63/269 (23%), Positives = 101/269 (37%), Gaps = 18/269 (6%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 + + + AS K L +E+ FD+VIIDEA QA A CL L AK + VGD KQ Sbjct: 500 KQTFPIWLSSLASLHKVLPMEQQMFDLVIIDEATQANIAACLPALQRAKAALV-VGDSKQ 558 Query: 62 LPPTIKSKKA---AAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNG 118 L +A + L + R G+ R + + S + + Sbjct: 559 LRHFSFLSRAKQTQIQTQLGLAPDCR----GLMSYRDASMLDLVSQSLASQSQVVFLNEH 614 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEI 178 + + G Q S V N EAE +++ Sbjct: 615 FRSKPELIQFSNQ-QFYQGMLKIMQHRPCTSSGHLHRVHVTGSRDSKGINAIEAEALIQK 673 Query: 179 VEYLLRSG---VPPEDIGVITPYNGQVELIRNILNSRC-----SLKPVEVSTVDSFQGRE 230 + L+ + P IGV++ + Q E + + +R + ++T FQG E Sbjct: 674 LSQLIDEQENALVPSSIGVLSCFRNQAEYLSQQILARFSAQQLERHQLRIATPFGFQGEE 733 Query: 231 KDIIILSLVRS-NRNGEIGFLRDERRLNV 258 +DI++LS + N + +L E NV Sbjct: 734 RDIMLLSFSITANDSRAAVYLNREDMFNV 762 >tr:Q5AAW1_CANAL Hypothetical protein HCS1. Candida albicans SC5314. Length = 719 Score = 185 bits (470), Expect = 7e-47 Identities = 103/292 (35%), Positives = 149/292 (51%), Gaps = 38/292 (13%) Query: 1 EAKVVAMTCTGAASK-----RKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--KKF 53 +A+VV T G+ S + E FD +IIDE +Q+LE +C IPLLL+ K+ Sbjct: 375 QAQVVVATLHGSGSYELKNSVGTNNNEGIVFDTIIIDEVSQSLEPQCWIPLLLSNRFKRL 434 Query: 54 ILVGDHKQLPPTIKSKKAAAKAG---------LEESLFERLVELGVS---VVRLNVQYRM 101 ++ GD+ QLPPTIK++K+ + + L +LF+RL++ L+VQYRM Sbjct: 435 VIAGDNMQLPPTIKTQKSNSSSPSSSSSSASILATTLFDRLMKHCHGEKYKKLLDVQYRM 494 Query: 102 HPEICRLPSNLFYEGN-----GLVDISSVARRL-EYDSANPGFFPTPQFIVPLSFVDNSG 155 + I + PS Y+ + +IS V E + S Sbjct: 495 NKSIMQFPSMQLYDNQLKCDDSVREISLVDLPGVEINDDTMTKCIWYDTQGGEFPEQIS- 553 Query: 156 VEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS- 214 E +G S N E V ++ LL SGV P+DIGVI PY+ QV+ ++ + Sbjct: 554 ---ESIDGDSKYNDMELLVVKGHIKKLLSSGVQPQDIGVIAPYSAQVQNLKKQMGLGGEV 610 Query: 215 --------LKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 +E+STVD FQGREK++IIL+LVRSN + EIGFL ++RRLNV Sbjct: 611 GSSANGDKDGQIEISTVDGFQGREKEVIILTLVRSNDSREIGFLSEQRRLNV 662 >tr:Q5V3H7_HALMA DNA helicase. Haloarcula marismortui (Halobacterium marismortui). Length = 911 Score = 183 bits (465), Expect = 3e-46 Identities = 90/260 (34%), Positives = 123/260 (47%), Gaps = 24/260 (9%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A+VVA T L+ +FDV ++DEA Q E L LA +F+LVGDH+ Sbjct: 641 SAQVVAATTATCG----GSTLQTQEFDVAVVDEAGQLTEPGTLAATTLAD-RFVLVGDHQ 695 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVE-LGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPP ++S+ L SLFERL++ + V L+ QYRM I S FY+G Sbjct: 696 QLPPVVQSE----DETLSTSLFERLIDAHPDAGVMLDRQYRMAQHIQAFASREFYDGQLR 751 Query: 120 VD-ISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEI 178 A+RL+ ++FVD+ G + NP EA+ + EI Sbjct: 752 PATGEVAAQRLDDLDGVATASLPEALRDRVAFVDSGGSQV------GNTNPTEADRIAEI 805 Query: 179 VEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSL 238 + +GVP DIGVI PY QV I L V V TVD FQG K++I++S Sbjct: 806 LASYRSAGVPAADIGVIAPYRAQVAEISKRL------PDVTVDTVDRFQGSSKEVIVISF 859 Query: 239 VRSNRNGEIGFLRDERRLNV 258 V + + D RR+NV Sbjct: 860 VAT-ETLDSPIFEDYRRINV 878 >tr:Q6DFV5_MOUSE Helicase with zinc finger domain. Mus musculus (Mouse). Length = 1965 Score = 182 bits (463), Expect = 4e-46 Identities = 84/288 (29%), Positives = 118/288 (40%), Gaps = 48/288 (16%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK--KFILVGDH 59 V + + L LE F V++DEAAQA+E E ++PL LA K + +L GDH Sbjct: 765 KHRVVVVTLSTSQYLCQLDLEPGFFTHVLLDEAAQAMECETIMPLALATKNTRIVLAGDH 824 Query: 60 KQLPPTIKSKKAAAK---AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEG 116 QL P + S+ A + L + L+E + L YR H I S LFYEG Sbjct: 825 MQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEG 884 Query: 117 NGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVV 176 G P + PL+F G + +E ++ N E VV Sbjct: 885 K---------------LMASGKQPAHKDFYPLTFFTARGEDVQEKNSTAFYNNAEVFEVV 929 Query: 177 EIVEYLLR------SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGRE 230 E VE L R + IGV+TPY QV IR L + L V V V + QG++ Sbjct: 930 ERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKK-RLSDVNVERVLNVQGKQ 988 Query: 231 KDIIILSLVRSN---------------------RNGEIGFLRDERRLN 257 ++ LS VR+ + + GFL + + LN Sbjct: 989 FRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLN 1036 >tr:Q8CHI3_MOUSE MKIAA0054 protein (Fragment). Mus musculus (Mouse). Length = 1617 Score = 182 bits (462), Expect = 5e-46 Identities = 84/288 (29%), Positives = 118/288 (40%), Gaps = 48/288 (16%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK--KFILVGDH 59 V + + L LE F V++DEAAQA+E E ++PL LA K + +L GDH Sbjct: 765 KHRVVVVTLSTSQYLCQLDLEPGFFTHVLLDEAAQAMECETIMPLALATKNTRIVLAGDH 824 Query: 60 KQLPPTIKSKKAAAK---AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEG 116 QL P + S+ A + L + L+E + L YR H I S LFYEG Sbjct: 825 MQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEG 884 Query: 117 NGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVV 176 G P + PL+F G + +E ++ N E VV Sbjct: 885 K---------------LMASGKQPAHKDFYPLTFFTARGEDVQEKNSTAFYNNAEVFEVV 929 Query: 177 EIVEYLLR------SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGRE 230 E VE L R + IGV+TPY QV IR L + L V V V + QG++ Sbjct: 930 ERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKK-RLSDVNVERVLNVQGKQ 988 Query: 231 KDIIILSLVRSN---------------------RNGEIGFLRDERRLN 257 ++ LS VR+ + + GFL + + LN Sbjct: 989 FRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLN 1036 >tr:Q55F22_DICDI Hypothetical protein. Dictyostelium discoideum (Slime mold). Length = 2523 Score = 181 bits (460), Expect = 1e-45 Identities = 96/263 (36%), Positives = 131/263 (49%), Gaps = 20/263 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK-KKFILVGDH 59 + A+ FK ++V++DE+ Q+ E LIPL + +K ILVGD Sbjct: 1707 RNATIIFATLSAS--GSKPIRSNFKANIVLVDESTQSSEPASLIPLCIGNIEKLILVGDP 1764 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPPTI S ++A GL SLFERL + V LN QYRMHP I R PSN FY+ L Sbjct: 1765 LQLPPTIFSSESAKN-GLNISLFERL-SKVLPVEMLNTQYRMHPTISRFPSNQFYKDRLL 1822 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 + + + F + P+ F D +EE + S +N E V ++ Sbjct: 1823 DGDNVKSLVYNQHN-----FHSDIKYGPIRFYDVIDSKEESGK-RSLKNKLEITMVFTLI 1876 Query: 180 EYLLRSGVPPE--DIGVITPYNGQVELIRNILNSRCSLKPVEV--STVDSFQGREKDIII 235 + L++ + G+ITPY Q I+ + P+ + ST+D QG EKDIII Sbjct: 1877 KKLVQDYPECKKFSFGIITPYKLQKSEIKE--QHKQFNYPLNIETSTIDGVQGSEKDIII 1934 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VRS R IGFL D RR+NV Sbjct: 1935 LSCVRSER---IGFLSDRRRINV 1954 >tr:Q54HF4_DICDI Hypothetical protein. Dictyostelium discoideum (Slime mold). Length = 1677 Score = 181 bits (460), Expect = 1e-45 Identities = 96/258 (37%), Positives = 123/258 (47%), Gaps = 16/258 (6%) Query: 7 MTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK-KKFILVGDHKQLPPT 65 + + A E F D+V+IDE+ Q+ E +IPL L KK ILVGD QLPPT Sbjct: 1309 IVFSTLAGSGSKAIFENFSPDIVLIDESTQSSEPTSIIPLSLGSVKKLILVGDPVQLPPT 1368 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSV 125 I SK+ A GL+ SLFERL + LN QYRMHP + S FY G + Sbjct: 1369 IFSKQ-GADCGLKISLFERLAKSIDVQ-FLNTQYRMHPVTSKFISEEFYNGTLKDGENVS 1426 Query: 126 ARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRS 185 N F P F F ++ + S N E + V +++ L+ Sbjct: 1427 IDSYN----NCKFHFDPSFGPMKFFDLPKSNQKVIKK--SIMNQDEIDKVFTLIKELI-E 1479 Query: 186 GVPPE---DIGVITPYNGQVELIRNILNSRCSLKPVE--VSTVDSFQGREKDIIILSLVR 240 P G+ITPY Q+ I+ LN R + VST+D QG EKDIII+S VR Sbjct: 1480 KYPECKKLSFGIITPYKLQMNQIKEQLN-RSEHHNLNISVSTIDGVQGSEKDIIIMSCVR 1538 Query: 241 SNRNGEIGFLRDERRLNV 258 S IGFL D RR+NV Sbjct: 1539 SIEKFGIGFLSDRRRINV 1556 >tr:Q7S2N1_NEUCR Hypothetical protein. Neurospora crassa. Length = 2313 Score = 180 bits (457), Expect = 2e-45 Identities = 85/294 (28%), Positives = 130/294 (44%), Gaps = 41/294 (13%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 + +V+ T TGAA + DV++++EA + LE+ L L + K+ IL+GDHK Sbjct: 737 QKRVIGCTTTGAAKYSSLIRA--ATPDVILVEEAGEILESHVLTALAPSVKQLILIGDHK 794 Query: 61 QLPPTIKSKKAAAK----AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEG 116 QL P I + + + L SLFERL+ G L Q+RM PEI +P L Y Sbjct: 795 QLRPKINNYALSVEKGDGYDLNRSLFERLIMQGAPHTTLQKQHRMVPEISMIPRALTYP- 853 Query: 117 NGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVV 176 L+D + R + S +N EA+ V+ Sbjct: 854 -DLLDGPKTSGRP-RIRGLQDHVVFVNHGKLEDTDKGLRERRDPGAKESKKNTFEAQMVL 911 Query: 177 EIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-------------------- 216 E +++ + G + I ++TPY GQ+ +++++L Sbjct: 912 ECIKFFGQQGYSADKIVILTPYLGQLRVLQDLLRENQHDPALSEMDKLELLRAGLLSKAA 971 Query: 217 ------PVEVST------VDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 P+ VST VD++QG E DI+I SL RSN +G+IGF+ RLNV Sbjct: 972 AKVDEKPLRVSTIAANGGVDNYQGEENDIVIASLTRSNESGDIGFMSAPERLNV 1025 >tr:Q5AWT4_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. Length = 2310 Score = 180 bits (456), Expect = 3e-45 Identities = 86/287 (29%), Positives = 130/287 (45%), Gaps = 34/287 (11%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +++ T T AA L VV+++EA + LE+ L L K+ I++GDH+ Sbjct: 719 SKRIIGCTTTAAAINASVLNTT--SPGVVLLEEAGEILESHVLTALGSHTKQLIMIGDHQ 776 Query: 61 QLPPTIKSKKAAAK----AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEG 116 QL P I + + + L SLFERLVE G L Q+RM PEI L L Y Sbjct: 777 QLRPKINNYALSVEKGSGYDLNRSLFERLVESGYPHSTLAKQHRMAPEISALVRRLTYPD 836 Query: 117 NGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVV 176 D + F P F+ + + S QN E + V+ Sbjct: 837 LLDGDKTKTRLAPRGLQNRVVFI---DHSQPEGFLHGVSDRDGDGGKGSKQNTFEVKLVL 893 Query: 177 EIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-------------------- 216 +IV+YL + G + + ++TPY GQ+ L+R L Sbjct: 894 KIVKYLGQQGYGTDKLVILTPYLGQLHLLREELRKDTDPVLNDLDSYDLVRAGLISHASA 953 Query: 217 -----PVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 P+++ST+D++QG E DI+I +L RSN++G+IGF+ +RLNV Sbjct: 954 QHVKRPIKLSTIDNYQGEESDIVIATLTRSNKDGDIGFMSAPQRLNV 1000 >tr:Q8BZZ6_MOUSE Mus musculus 15 days embryo male testis cDNA, RIKEN full-length enriched library, clone:8030408H03 product:hypothetical Histidine-rich region/Glutamine-rich region containing protein, full insert sequence. (Fragment). Mus musculus (Mouse). Length = 1215 Score = 179 bits (454), Expect = 4e-45 Identities = 83/288 (28%), Positives = 117/288 (40%), Gaps = 48/288 (16%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK--KFILVGDH 59 V + + L LE F V++DEAAQA+E E ++PL LA K + +L GDH Sbjct: 15 KHRVVVVTLSTSQYLCQLDLEPGFFTHVLLDEAAQAMECETIMPLALATKNTRIVLAGDH 74 Query: 60 KQLPPTIKSKKAAAK---AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEG 116 QL P + S+ A + L + L+E + L YR H I S LFYEG Sbjct: 75 MQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEG 134 Query: 117 NGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVV 176 G P + PL+F G + +E ++ N E VV Sbjct: 135 K---------------LMASGKQPAHKDFYPLTFFTARGEDVQEKNSTAFYNNAEVFEVV 179 Query: 177 EIVEYLLR------SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGRE 230 E VE L R + IGV+TPY QV R L + L V V V + QG++ Sbjct: 180 ERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRTRAELRKK-RLSDVNVERVLNVQGKQ 238 Query: 231 KDIIILSLVRSN---------------------RNGEIGFLRDERRLN 257 ++ LS VR+ + + GFL + + LN Sbjct: 239 FRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLN 286 >tr:Q922U3_MOUSE BC006779 protein (Fragment). Mus musculus (Mouse). Length = 717 Score = 179 bits (454), Expect = 4e-45 Identities = 90/279 (32%), Positives = 129/279 (46%), Gaps = 39/279 (13%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK---KFILVGDH 59 V+ TC+ AASK + + ++IDEA A E E LIPL+ K K +L+GDH Sbjct: 379 SVILCTCSCAASKSLKILNVRQ----ILIDEAGMATEPETLIPLVCFSKTVEKVVLLGDH 434 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 KQL P +KS++ + G++ SLFER + L+ QYRMH +IC PS FY G Sbjct: 435 KQLRPVVKSEQLQSL-GMDRSLFERYHRD---AIMLDTQYRMHKDICSFPSVEFYGGK-- 488 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEE------EEPEGYSYQNPGEAE 173 + + T + + F G E+ E+ S NP E Sbjct: 489 -----LKTWSDLRRLPSILGHTGKPSCSVIFGSVQGHEQKLLVSTEDGNENSRANPEEVT 543 Query: 174 FVVEIVEYL-LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKD 232 VV I++ L L V P+DI V+TPYN Q I L R V V+++ QG E Sbjct: 544 QVVRIIKQLTLDRTVDPKDIAVLTPYNAQAAAISRGLMQRGV-TGVTVTSITKSQGSEWR 602 Query: 233 IIILSLVRSNRNGEI-------------GFLRDERRLNV 258 +I+S VR+ ++ GF+ D ++NV Sbjct: 603 YVIVSTVRTCPRSDVDQRPTKSWLKKFLGFVVDPHQVNV 641 >tr:Q7KUL0_DROME CG9425-PB, isoform B. Drosophila melanogaster (Fruit fly). Length = 2103 Score = 179 bits (454), Expect = 5e-45 Identities = 80/288 (27%), Positives = 119/288 (41%), Gaps = 49/288 (17%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--KKFILVGDH 59 + + + + +L L K F + +DEAAQA+E E ++PL LA + +L GDH Sbjct: 927 RHRIVVVTLSISMELATLGLPKGLFTHIFLDEAAQAMECEAIMPLALANDSTRIVLAGDH 986 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSV----VRLNVQYRMHPEICRLPSNLFYE 115 Q+ P + S A + L SL ERL + S + L YR H I R S LFYE Sbjct: 987 MQMSPELFS-AFAKERKLHISLLERLYDHYPSNFPCKILLCENYRAHEAIIRFTSELFYE 1045 Query: 116 GNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFV 175 G P PL+F G + ++ ++ N E V Sbjct: 1046 ---------------QKLVASGKQPRHDRFYPLTFFTTRGEDVQDKNSTAFYNNAEVYEV 1090 Query: 176 VEIVEYLLRS------GVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGR 229 VE V L + + IG++TPY+ QV IR+ L R + + V V + QG+ Sbjct: 1091 VERVSELRKRWPSAWGKLNDTSIGIMTPYSDQVFRIRSELRKR-RMGGISVERVLNVQGK 1149 Query: 230 EKDIIILSLVRSNRN--------------------GEIGFLRDERRLN 257 + + LS VR+ R + GFL + + LN Sbjct: 1150 QFRAVFLSTVRTRRTCMPQGSAPGSASTTSIGDADADYGFLSNSKLLN 1197 >tr:Q59RL2_CANAL Hypothetical protein DNA2. Candida albicans SC5314. Length = 1426 Score = 178 bits (453), Expect = 6e-45 Identities = 87/274 (31%), Positives = 124/274 (45%), Gaps = 26/274 (9%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 V T + + ++ FD I+DEA+Q L PL A KKF++VGDH QL Sbjct: 1075 KVIATTCLSITDVCFNL--RYSFDYCIVDEASQITLPVSLGPLRFA-KKFVMVGDHDQLQ 1131 Query: 64 PTIKSKKAAAKAGLEESLFERLV-ELGVSVVRLNVQYRMHPEICRLPSNLFYEGN----- 117 P + K L SLF L E SV L QYRM+ +I + + L Y Sbjct: 1132 PLVTHPDKRVKQELSRSLFSLLAKEHPDSVSHLTYQYRMNSDIMNVCNTLIYNNKLKCGS 1191 Query: 118 ------------GLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 V S + + DS + V D EE G Sbjct: 1192 EQVAQNSLKIPHPEVLNSFIGEDVSPDSQWIHKIFDEKNNVLFLDYDAVPAVEENV-GEM 1250 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N EA + +IV L+ GV ++IGV++ Y Q+ +++ LN+ LK +E+ T D Sbjct: 1251 VINTKEALLIQQIVNALVHGGVKEDEIGVMSFYRAQLSVLKKNLNN---LKDLEILTADQ 1307 Query: 226 FQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 +QGR+K+ II+SLVRSN G +++ RRLNV Sbjct: 1308 YQGRDKECIIISLVRSNERKFAGDLMKEYRRLNV 1341 >tr:Q54HF3_DICDI Hypothetical protein. Dictyostelium discoideum (Slime mold). Length = 1255 Score = 178 bits (452), Expect = 7e-45 Identities = 97/262 (37%), Positives = 123/262 (46%), Gaps = 16/262 (6%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK-KKFILVGDHKQ 61 K ++ + A E F D+V+IDE+ Q+ E +IPL L KK ILVGD Q Sbjct: 799 KSTSIVFSTLAGSGSKAIFENFSPDIVLIDESTQSSEPTSIIPLSLGSIKKLILVGDPVQ 858 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVD 121 L PTI SK A GL+ SLFERL + LN QYRMHP I + S FY G Sbjct: 859 LAPTIFSKD-GADCGLKISLFERLAKSIDVQ-FLNTQYRMHPVISKFISEEFYNGT---- 912 Query: 122 ISSVARRLEYDSANPGFFP-TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + DS N F P F F + + S N E + V +++ Sbjct: 913 -LKDGENVSIDSFNNCKFHFDPSFGPMKFFNLPKSDQIVIKK--SIMNQDEIDKVFTLIK 969 Query: 181 YLLRSGVPPE---DIGVITPYNGQVELIRNILNSR-CSLKPVEVSTVDSFQGREKDIIIL 236 L+ P G+ITPY Q+ I+ LN + VST+D QG EKDIII+ Sbjct: 970 ELI-EKYPECKKLSFGIITPYKLQMIQIKEQLNRSEHRYLNISVSTIDGVQGSEKDIIIM 1028 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 S VR IGFL D RR+NV Sbjct: 1029 SCVRCTEKYGIGFLSDRRRINV 1050 >tr:Q9AVZ7_GUITH Sen1 protein. Guillardia theta (Cryptomonas phi). Length = 692 Score = 177 bits (450), Expect = 1e-44 Identities = 91/255 (35%), Positives = 128/255 (50%), Gaps = 16/255 (6%) Query: 8 TCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIK 67 T ++ L +IIDEAAQ++E LIP+ + ILVGD QLP T+ Sbjct: 367 TTLACSNYHLINNLT--SKQYLIIDEAAQSIELSSLIPIKKYTHRIILVGDIHQLPATVF 424 Query: 68 SKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVAR 127 SK A A G SL +R + L +QYRMHP+I P+ FY+ N L D V++ Sbjct: 425 SKSAIAF-GYNRSLLKRFQLNRYPTLFLGIQYRMHPQISSFPARKFYKNN-LKDSWKVSK 482 Query: 128 RLEYDSANPGFFPTPQFIVPLSFVDNS-GVEEEEPEGY-SYQNPGEAEFVVEIVEYLLR- 184 + PL F D GVE + + S+ N E F+ ++ Sbjct: 483 ISNFHQLRC--------FSPLIFFDIIDGVENYHTDNHFSWCNLDEIRFINLYFRSIICL 534 Query: 185 -SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNR 243 S + IG I+ Y+GQ+E +R+IL++ ++ST+DSFQG+EKDI+ S VRS Sbjct: 535 ISNLNELTIGFISGYSGQIEEMRDILSNSKIKLNEQISTIDSFQGKEKDILFFSCVRSKI 594 Query: 244 NGEIGFLRDERRLNV 258 IGFL D RR+NV Sbjct: 595 ERGIGFLADGRRINV 609 >tr:Q55EG2_DICDI Hypothetical protein. Dictyostelium discoideum (Slime mold). Length = 4540 Score = 177 bits (449), Expect = 2e-44 Identities = 100/259 (38%), Positives = 130/259 (50%), Gaps = 18/259 (6%) Query: 5 VAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK---KFILVGDHKQ 61 + + A+ L FK +VVI+DEA Q+ E C+IPL L K K ILVGD Q Sbjct: 3674 ICFSTLSASGSN--LVQSSFKPNVVIVDEATQSCETSCIIPLSLGAKSMKKLILVGDPVQ 3731 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVD 121 LPPTI SK+ + GL SLFERL + V LNVQYRMHP I + PS+ FY D Sbjct: 3732 LPPTIFSKE-SIHCGLGISLFERL-SKVLPVSMLNVQYRMHPLISKFPSSQFYH-----D 3784 Query: 122 ISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 I + A F Q + F D + EE + S +N E V +++ Sbjct: 3785 ILKDGDNVVSSDAYSLRFHENQDYGAIRFFDVTDSREERGK-TSIKNQLEITMVFTLIKK 3843 Query: 182 L--LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLV 239 L G++TPY Q + I + +E+ T+DSFQG EKDI+I+S V Sbjct: 3844 LTQDHPETKQYSFGIVTPYKLQRKEIEDAYKQLNLSLNIEIKTIDSFQGSEKDIMIMSCV 3903 Query: 240 RSNRNGEIGFLRDERRLNV 258 R N IGFL D RR+NV Sbjct: 3904 R---NESIGFLSDRRRINV 3919 >tr:Q504Q7_HUMAN Hypothetical protein. Homo sapiens (Human). Length = 1163 Score = 177 bits (449), Expect = 2e-44 Identities = 82/288 (28%), Positives = 118/288 (40%), Gaps = 48/288 (16%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK--KFILVGDH 59 V + + L LE F +++DEAAQA+E E ++PL LA + + +L GDH Sbjct: 765 KHRVVVVTLNTSQYLCQLDLEPGFFTHILLDEAAQAMECETIMPLALATQNTRIVLAGDH 824 Query: 60 KQLPPTIKSKKAAAK---AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEG 116 QL P + S+ A + L + L+E + L YR H I S LFYEG Sbjct: 825 MQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEG 884 Query: 117 NGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVV 176 G P + PL+F G + +E ++ N E VV Sbjct: 885 K---------------LMASGKQPAHKDFYPLTFFTARGEDVQEKNSTAFYNNAEVFEVV 929 Query: 177 EIVEYLLR------SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGRE 230 E VE L R + IGV+TPY QV IR L + L V V V + QG++ Sbjct: 930 ERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKK-RLSDVNVERVLNVQGKQ 988 Query: 231 KDIIILSLVRSN---------------------RNGEIGFLRDERRLN 257 ++ LS VR+ + + GFL + + LN Sbjct: 989 FRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLN 1036 >tr:Q55F23_DICDI Hypothetical protein. Dictyostelium discoideum (Slime mold). Length = 2314 Score = 177 bits (449), Expect = 2e-44 Identities = 94/257 (36%), Positives = 130/257 (50%), Gaps = 18/257 (7%) Query: 7 MTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK-KKFILVGDHKQLPPT 65 + + ++ FK ++V++DE+ Q+ E LIPL + +K ILVGD QLPPT Sbjct: 1512 IVFSTLSASGSGSVRSNFKANIVLVDESTQSSEPASLIPLCIGNIEKLILVGDPLQLPPT 1571 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSV 125 I S +A GL SLFERL + V LN QYRMHP I R PSN FY+ L + Sbjct: 1572 IFSSGSAEN-GLNISLFERL-SKVLPVEMLNTQYRMHPTISRFPSNQFYKDRLLDGDNVK 1629 Query: 126 ARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRS 185 + + F + P+ F D +EE + S +N E V +++ L++ Sbjct: 1630 SLVYNQHN-----FHSDIKYGPIRFYDVIDSKEESGK-RSLKNKLEITMVFTLIKKLVQD 1683 Query: 186 GVPPE--DIGVITPYNGQVELIRNILNSRCSLKPVEV--STVDSFQGREKDIIILSLVRS 241 + G+ITPY Q I+ + P+ + ST+D QG KDIIILS VRS Sbjct: 1684 YPECKKFSFGIITPYKLQKSEIKE--QHKQFNYPLNIETSTIDGVQGSXKDIIILSCVRS 1741 Query: 242 NRNGEIGFLRDERRLNV 258 R IGFL D RR+NV Sbjct: 1742 ER---IGFLSDRRRINV 1755 >tr:Q54XT3_DICDI Hypothetical protein. Dictyostelium discoideum (Slime mold). Length = 1793 Score = 176 bits (448), Expect = 2e-44 Identities = 91/260 (35%), Positives = 136/260 (52%), Gaps = 13/260 (5%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 VVA T TGA+ ++ K VII+EAA+ LE + L + +L+GDH+ Sbjct: 1021 SVNVVAATITGASRLKRVFDSINSK--CVIIEEAAEVLEGHIVSVLPKTIEHLVLIGDHE 1078 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P+ + A K L SLFER+++ G + +L++Q RM P I + ++ L Sbjct: 1079 QLKPSCAVYQLAEKFQLNVSLFERIMKNGGAHRQLSIQRRMVPNISQFIHPIYP---NLR 1135 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + V R +S G F+ E E S N EA++VV + + Sbjct: 1136 NHPEVLIRFATESTIKGIQKNIFFLEHTIP------ESSPTESTSKSNLFEADYVVGLAD 1189 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRC--SLKPVEVSTVDSFQGREKDIIILSL 238 YLL+ P DI ++TPY GQ+ I+N + +R L V+V TVD +QG E +I+ILSL Sbjct: 1190 YLLKQEYKPTDIVILTPYTGQLLKIKNQIRNRKHELLSKVQVRTVDQYQGEECNIVILSL 1249 Query: 239 VRSNRNGEIGFLRDERRLNV 258 VRSN G+ GF++ + R+NV Sbjct: 1250 VRSNERGDSGFVKIKNRINV 1269 >tr:Q626N4_CAEBR Hypothetical protein CBG00906 (Fragment). Caenorhabditis briggsae. Length = 2047 Score = 176 bits (448), Expect = 2e-44 Identities = 81/268 (30%), Positives = 126/268 (47%), Gaps = 27/268 (10%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 +V T TG + R L E+ + ++I++EAA+ LEA L ++ + + +++GDHKQL Sbjct: 1075 MIVGCTTTGCSRLRPQL--EQVQPRILIVEEAAEVLEAHILSAMISSVEHCVMIGDHKQL 1132 Query: 63 PPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICR-LPSNLFYEGNGLVD 121 P + A + G++ S+FERLVE + +L Q+RM+P I + FY+ ++D Sbjct: 1133 QPNPAVHELAEEYGMKISMFERLVERALPYSQLREQHRMNPLISDVIVKPAFYDN--VID 1190 Query: 122 ISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 +V + F +E+ P+G S+ N E V +V + Sbjct: 1191 ADNVFHYPPVEGMATNLFMWS-----------HKGKEQSPDGISWYNTQEVAMTVSLVRH 1239 Query: 182 LLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-------PVEVSTVDSFQGREKDII 234 LL+ DI V+T Y Q + + V TVDSFQGRE ++ Sbjct: 1240 LLKQSYTHRDIVVLTTYAAQRNFMTREFPGMFVGPQQQYEQGQIPVHTVDSFQGREGKVV 1299 Query: 235 ILSLVRS----NRNGEIGFLRDERRLNV 258 I+SLVRS N IGFL R+ V Sbjct: 1300 IVSLVRSHRGVPENTGIGFLAVPNRICV 1327 >tr:Q69ZE2_MOUSE MKIAA1631 protein (Fragment). Mus musculus (Mouse). Length = 1027 Score = 176 bits (446), Expect = 4e-44 Identities = 87/298 (29%), Positives = 133/298 (44%), Gaps = 50/298 (16%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLL---------LAKKKFI 54 V +T AS+ S F + IDEA +E E L+ + + + Sbjct: 641 RVLITTLITASRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMDVKETGNPGGQLV 700 Query: 55 LVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELG-------------VSVVRLNVQYRM 101 L GD +QL P ++S A K GL SL ERL+ L YR Sbjct: 701 LAGDPRQLGPVLRS-PLALKHGLGYSLLERLLAYNSLYKKGPNGYDPQFITKLLR-NYRS 758 Query: 102 HPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEP 161 HP I +P+ L+Y+G L + V R + PQ P+ F G +E E Sbjct: 759 HPTILDIPNQLYYDG-ELQACADVVDRERFCRWEG----LPQQGFPIIFHGVMGKDEREG 813 Query: 162 EGYSYQNPGEAEFVVEIVEYLL-------RSGVPPEDIGVITPYNGQVELIR-------N 207 S+ NP EA V ++ LL ++ + P ++GVI+PY QVE IR Sbjct: 814 NSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRNVGVISPYRKQVEKIRYCITKLDR 873 Query: 208 ILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRN-------GEIGFLRDERRLNV 258 L +K ++V +V+ FQG+E+ +I++S VRS+++ +GFL++ +R NV Sbjct: 874 ELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNV 931 >tr:Q7D8I6_MYCTU Hypothetical protein. Mycobacterium tuberculosis. Length = 1147 Score = 176 bits (446), Expect = 4e-44 Identities = 67/274 (24%), Positives = 99/274 (36%), Gaps = 34/274 (12%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 + A + K D+++IDEA Q A + A +L+GD + Sbjct: 851 RDTAGCVIGGTAWDFANGNRVPKASLDLLVIDEAGQFCLANTIAVAPAAT-NLLLLGDPQ 909 Query: 61 QLPPTIK-SKKAAAKAGLEESLFERLVEL-GVSVVRLNVQYRMHPEICRLPSNLFYEGNG 118 QLP + + L + L L+ YRMHP +C S L YEG Sbjct: 910 QLPQVSQGTHPEPVDTSALSWLVDGQHTLPDERGYFLDRSYRMHPAVCAAVSALSYEGR- 968 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEI 178 + +G S ++P EAE ++ Sbjct: 969 ----------------LCSHTERTAVRRLDGYPPGVHTRGVHHKGNSIESPEEAEAILAE 1012 Query: 179 VEYLLRSG---------VPPEDIGVITPYNGQVELIRNILNSRCSL--KPVEVSTVDSFQ 227 + LL S + D+ V+ PYN QV L+R L S V V TVD FQ Sbjct: 1013 LRQLLGSPWTDEHGTRPLAASDVLVLAPYNAQVALVRRRLASAGLGGADGVRVGTVDKFQ 1072 Query: 228 GREKDIIILSLVRSN---RNGEIGFLRDERRLNV 258 G + ++ +S+ S+ I FL + RLNV Sbjct: 1073 GGQAPVVFISMTASSADDVPRGISFLLNRNRLNV 1106 >tr:O50466_MYCTU Hypothetical protein. Mycobacterium tuberculosis. Length = 1139 Score = 176 bits (446), Expect = 4e-44 Identities = 67/274 (24%), Positives = 99/274 (36%), Gaps = 34/274 (12%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 + A + K D+++IDEA Q A + A +L+GD + Sbjct: 843 RDTAGCVIGGTAWDFANGNRVPKASLDLLVIDEAGQFCLANTIAVAPAAT-NLLLLGDPQ 901 Query: 61 QLPPTIK-SKKAAAKAGLEESLFERLVEL-GVSVVRLNVQYRMHPEICRLPSNLFYEGNG 118 QLP + + L + L L+ YRMHP +C S L YEG Sbjct: 902 QLPQVSQGTHPEPVDTSALSWLVDGQHTLPDERGYFLDRSYRMHPAVCAAVSALSYEGR- 960 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEI 178 + +G S ++P EAE ++ Sbjct: 961 ----------------LCSHTERTAVRRLDGYPPGVHTRGVHHKGNSIESPEEAEAILAE 1004 Query: 179 VEYLLRSG---------VPPEDIGVITPYNGQVELIRNILNSRCSL--KPVEVSTVDSFQ 227 + LL S + D+ V+ PYN QV L+R L S V V TVD FQ Sbjct: 1005 LRQLLGSPWTDEHGTRPLAASDVLVLAPYNAQVALVRRRLASAGLGGADGVRVGTVDKFQ 1064 Query: 228 GREKDIIILSLVRSN---RNGEIGFLRDERRLNV 258 G + ++ +S+ S+ I FL + RLNV Sbjct: 1065 GGQAPVVFISMTASSADDVPRGISFLLNRNRLNV 1098 >tr:Q7U0A3_MYCBO Hypothetical protein Mb1283c. Mycobacterium bovis. Length = 1139 Score = 176 bits (446), Expect = 4e-44 Identities = 67/274 (24%), Positives = 99/274 (36%), Gaps = 34/274 (12%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 + A + K D+++IDEA Q A + A +L+GD + Sbjct: 843 RDTAGCVIGGTAWDFANGNRVPKASLDLLVIDEAGQFCLANTIAVAPAAT-NLLLLGDPQ 901 Query: 61 QLPPTIK-SKKAAAKAGLEESLFERLVEL-GVSVVRLNVQYRMHPEICRLPSNLFYEGNG 118 QLP + + L + L L+ YRMHP +C S L YEG Sbjct: 902 QLPQVSQGTHPEPVDTSALSWLVDGQHTLPDERGYFLDRSYRMHPAVCAAVSALSYEGR- 960 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEI 178 + +G S ++P EAE ++ Sbjct: 961 ----------------LCSHTERTAVRRLDGYPPGVHTRGVHHKGNSIESPEEAEAILAE 1004 Query: 179 VEYLLRSG---------VPPEDIGVITPYNGQVELIRNILNSRCSL--KPVEVSTVDSFQ 227 + LL S + D+ V+ PYN QV L+R L S V V TVD FQ Sbjct: 1005 LRQLLGSPWTDEHGTRPLAASDVLVLAPYNAQVALVRRRLASAGLGGADGVRVGTVDKFQ 1064 Query: 228 GREKDIIILSLVRSN---RNGEIGFLRDERRLNV 258 G + ++ +S+ S+ I FL + RLNV Sbjct: 1065 GGQAPVVFISMTASSADDVPRGISFLLNRNRLNV 1098 >tr:Q6ZQ81_MOUSE MKIAA0625 protein (Fragment). Mus musculus (Mouse). Length = 778 Score = 175 bits (443), Expect = 9e-44 Identities = 98/332 (29%), Positives = 138/332 (41%), Gaps = 87/332 (26%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFK---FDVVIIDEAAQALEAECLIPLLLAKKKFILVG 57 E+ V+ T + + A F VI+DEA Q+ E E L PL+ K ILVG Sbjct: 209 ESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLILVG 268 Query: 58 DHKQLPPTIKSKKAAAKAGLEESLFERLVELGV-----------SVVRLNVQYRMHPEIC 106 D KQLPPT+ S KA G ++S+ R +L V++L +QYRMHP+IC Sbjct: 269 DPKQLPPTVISMKAQEY-GYDQSMMARFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDIC 327 Query: 107 RLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 PSN Y N ++ S+ F P V + G E + SY Sbjct: 328 LFPSNYVYNKN---LKTNRLTESIRCSSEWPFQPY--------LVFDVGDGSERRDNDSY 376 Query: 167 QNPGEAEFVVEIVEYLLRSGVPP---EDIGVITPYNGQVELIRN----ILNSRCSLKPV- 218 N E + V+EI++ L++ +IG+IT Y Q +I+ + + L+P+ Sbjct: 377 INVQEIKLVMEIIK-LIKEKRKDISFRNIGIITHYKAQKTMIQKDLEKEFDKKGLLQPIM 435 Query: 219 ---------------------------------------------------EVSTVDSFQ 227 EV TVD+FQ Sbjct: 436 MGESRQQDSEASKQQQKSSEFMHASDELGSSTVTQSGISSLENGATHTGPAEVDTVDAFQ 495 Query: 228 GREKDIIILSLVR-SNRNGEIGFLRDERRLNV 258 GR+KD II++ VR S G IGFL +RLNV Sbjct: 496 GRQKDCIIVTCVRASAVQGSIGFLASLQRLNV 527 >tr:Q55F26_DICDI Hypothetical protein. Dictyostelium discoideum (Slime mold). Length = 1772 Score = 174 bits (442), Expect = 1e-43 Identities = 97/263 (36%), Positives = 134/263 (50%), Gaps = 21/263 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK-KKFILVGDH 59 A +V T +G+ S F+ D++++DE+ Q+ E +IPL + +K I VGD Sbjct: 1357 RASIVFSTLSGSGS---ETVKNNFRADIILVDESTQSTEXSSIIPLCIGNIEKLIXVGDP 1413 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPPTI S ++A GL SLFERL + V L+VQYRMHP I R PSN FY L Sbjct: 1414 LQLPPTIFSTESAEN-GLNISLFERL-SKVLPVEMLHVQYRMHPTISRFPSNQFYRDRLL 1471 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 + + + F + P+ F D +EE S +N E V ++ Sbjct: 1472 DGDNVKSLVYNQHN-----FHSDIKYGPIRFYDVI-DSKEESGXRSLKNKXEITMVFTLI 1525 Query: 180 EYLLRSGVPPE--DIGVITPYNGQVELIRNILNSRCSLKPVEV--STVDSFQGREKDIII 235 + L++ + G+ TPY Q I+ + P+ + ST+D FQG EKDIII Sbjct: 1526 KKLVQDYPECKKFSFGIXTPYKLQKSEIKE--QHKQFNYPLNIETSTIDGFQGSEKDIII 1583 Query: 236 LSLVRSNRNGEIGFLRDERRLNV 258 LS VRS R IGFL D RR+NV Sbjct: 1584 LSCVRSER---IGFLSDRRRINV 1603 >tr:Q6FKF3_CANGA Candida glabrata strain CBS138 chromosome L complete sequence. Candida glabrata (Yeast) (Torulopsis glabrata). Length = 1125 Score = 174 bits (442), Expect = 1e-43 Identities = 91/271 (33%), Positives = 128/271 (47%), Gaps = 45/271 (16%) Query: 25 KFDVVIIDEAAQALEAECLIPLLL-AKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFE 83 + VVI+DE+ Q+ E LIPL L K F+ VGD KQL + L SLFE Sbjct: 818 EIPVVIMDESTQSSEVSTLIPLSLPGIKTFVFVGDDKQL------SSFSDIPQLSLSLFE 871 Query: 84 RLVELG--VSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPT 141 R+++ G + LN QYRMHP I P + Y+ L D + ++ A+P +F Sbjct: 872 RILQNGTYQNPHMLNTQYRMHPTISEFPRTMIYKN-ELQDGVTAEQKQLDKVAHPVYFYD 930 Query: 142 PQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV-EYLLRSGVPPEDIGVITPYNG 200 + V + SY N E ++E+V ++ GVP EDIG+ITPY G Sbjct: 931 Y-RATAQNREQLHRVRRRDVTTVSYYNRAECRMILEVVHMLVIEKGVPLEDIGIITPYAG 989 Query: 201 QVELI------------------------------RNILNSR---CSLKPVEVSTVDSFQ 227 Q E + + S C + ++VSTVD+FQ Sbjct: 990 QREQLATMVQADELINPRGLVIEKQSEEKDLFSVNEQSMGSNNTICIVNGLQVSTVDAFQ 1049 Query: 228 GREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 G EK +I+ S VR+N + IGFL+D+RRLNV Sbjct: 1050 GHEKSVIVFSCVRNNESNTIGFLKDQRRLNV 1080 >tr:Q9SHX8_ARATH F1E22.14. Arabidopsis thaliana (Mouse-ear cress). Length = 1076 Score = 173 bits (440), Expect = 2e-43 Identities = 90/244 (36%), Positives = 121/244 (49%), Gaps = 18/244 (7%) Query: 26 FDVVIIDEAAQALEAECLIPLLL-AKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 +++IDEAAQ E E IP+ L + ILVGD +QLP ++S+ A +AG SLFER Sbjct: 564 IQLLVIDEAAQLKECESSIPMQLPGLRHLILVGDERQLPAMVESQ-IALEAGFGRSLFER 622 Query: 85 LVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQF 144 L LG LN+QYRMH I P+ Y G ++D +V +R PG Sbjct: 623 LALLGHKKYMLNIQYRMHCSISSFPNKELY-GKKILDAPTVRQRNYTKQYLPGEMY---- 677 Query: 145 IVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPE-----DIGVITPYN 199 P SF++ + EE EG E VV V + ++GVI+PY Sbjct: 678 -GPYSFINIAYGREEYGEGEGRSLKNNVEVVVVAAIIANLLQVSEKTKTRINVGVISPYK 736 Query: 200 GQVELIRNILNSRCSLKP-----VEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDER 254 QV I+ + + + TVD FQG E+DIII+S VRSN G +GFL + R Sbjct: 737 AQVIAIQEKIQETSIGDAGGLFSLRIRTVDGFQGGEEDIIIVSTVRSNGVGRVGFLGNRR 796 Query: 255 RLNV 258 R NV Sbjct: 797 RTNV 800 >tr:Q5JR04_HUMAN Mov10, Moloney leukemia virus 10, homolog (Mouse). Homo sapiens (Human). Length = 947 Score = 172 bits (437), Expect = 5e-43 Identities = 84/298 (28%), Positives = 129/298 (43%), Gaps = 50/298 (16%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLL---------LAKKKFI 54 V +T A + S F + IDEA +E E L+ + + + Sbjct: 561 RVLITTLITAGRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLV 620 Query: 55 LVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELG-------------VSVVRLNVQYRM 101 L GD +QL P ++S GL SL ERL+ L YR Sbjct: 621 LAGDPRQLGPVLRSPLTQKH-GLGYSLLERLLTYNSLYKKGPDGYDPQFITKLLR-NYRS 678 Query: 102 HPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEP 161 HP I +P+ L+YEG L + V R + P+ P+ F G +E E Sbjct: 679 HPTILDIPNQLYYEG-ELQACADVVDRERFCRWAG----LPRQGFPIIFHGVMGKDEREG 733 Query: 162 EGYSYQNPGEAEFVVEIVEYLL-------RSGVPPEDIGVITPYNGQVELIR-------N 207 S+ NP EA V ++ LL ++ + P +GVI+PY QVE IR Sbjct: 734 NSPSFFNPEEAATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDR 793 Query: 208 ILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRN-------GEIGFLRDERRLNV 258 L +K ++V +V+ FQG+E+ +I++S VRS+++ +GFL++ +R NV Sbjct: 794 ELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNV 851 >tr:Q61XF9_CAEBR Hypothetical protein CBG03999. Caenorhabditis briggsae. Length = 741 Score = 172 bits (436), Expect = 6e-43 Identities = 85/254 (33%), Positives = 124/254 (48%), Gaps = 29/254 (11%) Query: 29 VIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVEL 88 ++DEAAQ +E + +L KK +L GD KQLP +K+ K L +S+ ERL+ Sbjct: 426 CLVDEAAQVMECQTWPAVLKM-KKLVLAGDPKQLPALVKT-KLGRDLKLNQSVMERLMLK 483 Query: 89 GV--SVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIV 146 S V LN QYR H EI ++ FY SS + Sbjct: 484 KENYSWVMLNTQYRSHEEITHWSNSCFY---DCHLKSSTKDEKKLVDELNPKPSFTGLYE 540 Query: 147 PLSFVDNSGVEEE----------------EPEGYSYQNPGEAEFVVEIVEYLLRSGVPPE 190 P+ +D SGV+ + + YSY N GEA + ++ + LL GV PE Sbjct: 541 PMVHIDTSGVKTDPERALTYEQRVTLVTDGEKEYSYSNIGEATYAMQHYKNLLDMGVKPE 600 Query: 191 DIGVITPYNGQVELIRNILNSRCSL------KPVEVSTVDSFQGREKDIIILSLVRSNRN 244 +I +I+PY GQ+EL+ +++ C K ++ TVDS QG+E D++I + VR+N Sbjct: 601 NIALISPYRGQIELLGRMIDEYCKTSNNMDCKNTKIGTVDSVQGQEYDVVIFTSVRNNPK 660 Query: 245 GEIGFLRDERRLNV 258 GF+ D RRLNV Sbjct: 661 KNFGFVSDVRRLNV 674 >tr:Q5JR03_HUMAN Mov10, Moloney leukemia virus 10, homolog (Mouse). Homo sapiens (Human). Length = 1003 Score = 172 bits (436), Expect = 6e-43 Identities = 84/298 (28%), Positives = 129/298 (43%), Gaps = 50/298 (16%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLL---------LAKKKFI 54 V +T A + S F + IDEA +E E L+ + + + Sbjct: 617 RVLITTLITAGRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLV 676 Query: 55 LVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELG-------------VSVVRLNVQYRM 101 L GD +QL P ++S GL SL ERL+ L YR Sbjct: 677 LAGDPRQLGPVLRSPLTQKH-GLGYSLLERLLTYNSLYKKGPDGYDPQFITKLLR-NYRS 734 Query: 102 HPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEP 161 HP I +P+ L+YEG L + V R + P+ P+ F G +E E Sbjct: 735 HPTILDIPNQLYYEG-ELQACADVVDRERFCRWAG----LPRQGFPIIFHGVMGKDEREG 789 Query: 162 EGYSYQNPGEAEFVVEIVEYLL-------RSGVPPEDIGVITPYNGQVELIR-------N 207 S+ NP EA V ++ LL ++ + P +GVI+PY QVE IR Sbjct: 790 NSPSFFNPEEAATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDR 849 Query: 208 ILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRN-------GEIGFLRDERRLNV 258 L +K ++V +V+ FQG+E+ +I++S VRS+++ +GFL++ +R NV Sbjct: 850 ELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNV 907 >tr:Q9VSE1_DROME CG7504-PA. Drosophila melanogaster (Fruit fly). Length = 1417 Score = 171 bits (434), Expect = 8e-43 Identities = 83/275 (30%), Positives = 123/275 (44%), Gaps = 43/275 (15%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A ++ T + + FD+ I+DEA Q E L+P+ +LVGD + Sbjct: 1105 RANIICTTLSSCVKLANYVDF----FDICIVDEATQCTEPWTLLPMRFGLTHMVLVGDMQ 1160 Query: 61 QLPPTIKSKKAAAKAGLEESLFER--------------LVELGVSVVRLNVQYRMHPEIC 106 QLP + SKKA GL S+F+R + + +L+ QYRMHPEIC Sbjct: 1161 QLPAVVLSKKA-IDFGLSNSMFDRIQRSLQTQLDKPGSYHLMHTKLFKLSTQYRMHPEIC 1219 Query: 107 RLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 R P+ FYE L++ AR I D++G + S Sbjct: 1220 RWPNQYFYEDQ-LINAECTARFASP-------LIPYCVINLKYTCDSNGAQ-----NKSI 1266 Query: 167 QNPGEAEFVVEIVEYLLRSGVPPE---DIGVITPYNGQVELIRNILNSRCSLKPVEVSTV 223 N EA FV +++ + P G+I+PY Q + ++ S ++ P TV Sbjct: 1267 SNNEEARFVAKLLTEM--DKHMPSKRFSYGLISPYQNQCYALSQVIPSHMNITP---QTV 1321 Query: 224 DSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 DS+QG EKD+II+S R+ GFL + +RLNV Sbjct: 1322 DSYQGLEKDVIIISNART---RGCGFLTNYQRLNV 1353 >tr:Q86BR1_DROME CG6967-PB, isoform B. Drosophila melanogaster (Fruit fly). Length = 810 Score = 170 bits (430), Expect = 3e-42 Identities = 89/272 (32%), Positives = 125/272 (45%), Gaps = 26/272 (9%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPL----LLAKKKFILVGDH 59 ++ T A F + IDEA + E E LI + A IL GDH Sbjct: 434 IIVATLCTVARLVTDTLGRYNFFTHIFIDEAGASTEPEALIGIMGIKQTADCHVILSGDH 493 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLV------------ELGVSVVRLNVQYRMHPEICR 107 KQL IKS +AA+ GL SL ERL+ +RL YR HP+I R Sbjct: 494 KQLGAVIKSNRAASL-GLSRSLMERLLQSDCYKSDENGNYDRNRQMRLCRNYRSHPQIVR 552 Query: 108 LPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQ 167 L + L+Y G ++ L + + P+ F GV E S Sbjct: 553 LFNELYYNGELKAQAPAMDVNLAANWS-----VLTNPQFPIIFQATHGVTNREQNSTSSY 607 Query: 168 NPGEAEFVVEIVEYLL-RSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSF 226 N EAE + V+ L+ V ED+G++ PY Q +L+ +L S+ VEV +V+++ Sbjct: 608 NNLEAEVICWYVKRLINDRVVGQEDVGIVAPYTAQGKLVTKLLQSKG-YPNVEVGSVETY 666 Query: 227 QGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QGREK III SLV+S +GF+ + RR+NV Sbjct: 667 QGREKTIIIASLVKS--FTNMGFMCNPRRVNV 696 >tr:Q8MRI1_DROME LD34829p (CG6967-PA, isoform A). Drosophila melanogaster (Fruit fly). Length = 825 Score = 169 bits (429), Expect = 3e-42 Identities = 89/272 (32%), Positives = 125/272 (45%), Gaps = 26/272 (9%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPL----LLAKKKFILVGDH 59 ++ T A F + IDEA + E E LI + A IL GDH Sbjct: 449 IIVATLCTVARLVTDTLGRYNFFTHIFIDEAGASTEPEALIGIMGIKQTADCHVILSGDH 508 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLV------------ELGVSVVRLNVQYRMHPEICR 107 KQL IKS +AA+ GL SL ERL+ +RL YR HP+I R Sbjct: 509 KQLGAVIKSNRAASL-GLSRSLMERLLQSDCYKSDENGNYDRNRQMRLCRNYRSHPQIVR 567 Query: 108 LPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQ 167 L + L+Y G ++ L + + P+ F GV E S Sbjct: 568 LFNELYYNGELKAQAPAMDVNLAANWS-----VLTNPQFPIIFQATHGVTNREQNSTSSY 622 Query: 168 NPGEAEFVVEIVEYLL-RSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSF 226 N EAE + V+ L+ V ED+G++ PY Q +L+ +L S+ VEV +V+++ Sbjct: 623 NNLEAEVICWYVKRLINDRVVGQEDVGIVAPYTAQGKLVTKLLQSKG-YPNVEVGSVETY 681 Query: 227 QGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QGREK III SLV+S +GF+ + RR+NV Sbjct: 682 QGREKTIIIASLVKS--FTNMGFMCNPRRVNV 711 >tr:Q9VCB7_DROME CG6204-PA. Drosophila melanogaster (Fruit fly). Length = 903 Score = 169 bits (428), Expect = 5e-42 Identities = 89/259 (34%), Positives = 124/259 (47%), Gaps = 22/259 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 E ++AMT T AA L + K V+ +EAA+ EA + L + ILVGDHK Sbjct: 617 EKDLLAMTTTCAARHNFLFRLLQSK--CVLFEEAAEIQEAHIVACLTPHTEHVILVGDHK 674 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P S+K SLFERL+ G+ RLN+QYRM I L Y+ Sbjct: 675 QLQPFSGSRKVPQ-----ISLFERLIVAGLPFSRLNLQYRMRSCISELLVPSIYDELLC- 728 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 S + +F S N EA + ++ E Sbjct: 729 SESVKEYEDIRLMSKNLYFVQHNQPEHCMS------------DMSIGNLYEAGVLAKLTE 776 Query: 181 YLL-RSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLV 239 +L+ ++ DI +++PYNGQ+E I+N L V+V++VDSFQG E +I++LSLV Sbjct: 777 FLIQKAQYKHSDIVILSPYNGQIECIKNALPQNYR-STVQVASVDSFQGLEANIVLLSLV 835 Query: 240 RSNRNGEIGFLRDERRLNV 258 RSN +G IGFLR R+ V Sbjct: 836 RSNISGRIGFLRQANRVCV 854 >tr:Q5ZKD7_CHICK Hypothetical protein. Gallus gallus (Chicken). Length = 967 Score = 167 bits (424), Expect = 1e-41 Identities = 87/301 (28%), Positives = 137/301 (45%), Gaps = 52/301 (17%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPL--LLAKK---------K 52 + +T A + S F V IDE A+E E ++ + LL + Sbjct: 610 RILITTLVTAGRLVSANFPPGYFSHVFIDECGHAVEPESVVAIAGLLTTMDPDTNPNGGQ 669 Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELG-------------VSVVRLNVQY 99 +L GD +QL P +S AA+ GL SL ERL+ L Y Sbjct: 670 LVLAGDPQQLGPVPRS-PLAAQHGLGTSLLERLMLHNALYAKSDEGYNPQFVTKLL-WNY 727 Query: 100 RMHPEICRLPSNLFYE-GNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEE 158 R H I ++P+ LFY+ + S R Y + P VP+ F G +E Sbjct: 728 RSHKAILKVPNELFYDSELKAYEGSEPDVRNFYCTWEE----LPNRGVPIIFHGVCGEDE 783 Query: 159 EEPEGYSYQNPGEAEFVVEIVEYLLRSG-------VPPEDIGVITPYNGQVELIR----- 206 E + S+ N E E VV+ ++ LL+S + P++IG+I+PY QVE IR Sbjct: 784 REAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQVEKIRLAITS 843 Query: 207 --NILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRS-------NRNGEIGFLRDERRLN 257 +L + + ++V +V+ FQG+E+ +I++S VRS ++ +GFL++ +RLN Sbjct: 844 KDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFRLGFLKNPKRLN 903 Query: 258 V 258 V Sbjct: 904 V 904 >tr:Q9HPR8_HALN1 DNA helicase. Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081). Length = 821 Score = 167 bits (424), Expect = 2e-41 Identities = 86/259 (33%), Positives = 126/259 (48%), Gaps = 26/259 (10%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A VVA T S+ L + +FDVV++DEA+Q E + L + +F+LVGDH+ Sbjct: 554 SAPVVAATTATCGSR----ILRELEFDVVLVDEASQLTEPDTLAAINRG-ARFVLVGDHE 608 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELG-VSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPP ++S L +SLFERL E + V L+ QYRM I S FY+G Sbjct: 609 QLPPVVRSG-----GRLSKSLFERLHETYPEASVMLDQQYRMSQRIQAFSSREFYDG--- 660 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 + + + G P ++F D G ++ +P EA+ V ++V Sbjct: 661 QLRPASSEVAGQRLTDVGVDPGGAVHGGVTFYDVPG------TDDAHVDPAEADRVADVV 714 Query: 180 EYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLV 239 + +G+ P +IGVI P+ QV I R + V V TVD FQG K++I++S V Sbjct: 715 TAYVDAGLDPGEIGVIAPFRAQVAEI-----GRRTPAGVAVDTVDRFQGSSKEVIVVSFV 769 Query: 240 RSNRNGEIGFLRDERRLNV 258 + E D RR+NV Sbjct: 770 -ARGTLEGPIFEDHRRVNV 787 >tr:Q8QGA6_ONCMY VHSV-induced protein (Fragment). Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri). Length = 440 Score = 166 bits (421), Expect = 3e-41 Identities = 86/247 (34%), Positives = 113/247 (45%), Gaps = 26/247 (10%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK-KKFILVGDHKQ 61 V+ TCT A++ K +IIDE A A E E IPL+ K ++ +L+GDHKQ Sbjct: 120 DVILCTCTAASNPNFYKLDLKQ----IIIDECAMATEPEAFIPLVTHKPEQIVLLGDHKQ 175 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVD 121 L P S +A+ G+ +SLFER +E + L+ QYRM IC PS FY G Sbjct: 176 LQPITHS-DLSARLGMRKSLFERYME---KALMLDTQYRMQERICEFPSKEFYNGILKTG 231 Query: 122 ISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEE------EEPEGYSYQNPGEAEFV 175 + L S P+ F G E E S N EAE Sbjct: 232 ATRKDSVLLAQSHRL---------TPILFGHVYGKEISLVVSTERGNENSKANSXEAEES 282 Query: 176 VEIVEYLL-RSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDII 234 V I L+ R+GV DI ++TPYN QV + L + V V+T+ QG E + Sbjct: 283 VRIASLLIKRAGVAASDIAILTPYNAQVAKVNETLEMNHI-QNVNVNTITKSQGSEWRYV 341 Query: 235 ILSLVRS 241 ILS VRS Sbjct: 342 ILSTVRS 348 >tr:O01976_CAEEL Hypothetical protein C41D11.7. Caenorhabditis elegans. Length = 625 Score = 165 bits (419), Expect = 5e-41 Identities = 86/284 (30%), Positives = 130/284 (45%), Gaps = 34/284 (11%) Query: 4 VVAMTCTGAASKRKSLALEKFKFD--VVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 VA GA+ ++ KFD + IIDEAAQ +EA+ P + K+ ++ GD KQ Sbjct: 210 RVAFATIGAS--FVDFVMKHKKFDPCLCIIDEAAQVMEAQTW-PAVYKMKRIVMAGDPKQ 266 Query: 62 LPPTIKSKKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 LP + + +A A GL+ S+ +R++E S + L QYR + +I + FY Sbjct: 267 LPALVFTDEAKAF-GLQNSVMDRILEKKNNFSWIMLENQYRSNAKIATWSNTCFYHNQLK 325 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPE----------------- 162 D + NP PL +D S + E Sbjct: 326 TD-VKCHEYSLHTILNPQPKKFRNLFDPLVLIDTSLERDVEKRLETYEHAVFDTNSINKT 384 Query: 163 --GYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC------S 214 G+SY N EA+ + + LL+ GV P DI +ITPY GQ L+ ++ Sbjct: 385 KQGFSYANLAEAKIAIGHYQRLLKYGVQPSDIAIITPYKGQTSLVTKLMEEFGAETGYTD 444 Query: 215 LKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 + TVDS QG+E +++I ++VRSN +GF+ + RRLNV Sbjct: 445 FVQTTIGTVDSVQGKEYEVVIFTMVRSNPRKTMGFVSELRRLNV 488 >tr:Q95TZ2_DROME GH20028p. Drosophila melanogaster (Fruit fly). Length = 903 Score = 165 bits (418), Expect = 7e-41 Identities = 88/259 (33%), Positives = 123/259 (47%), Gaps = 22/259 (8%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 E ++AMT T AA L + K V+ +EAA+ EA + L + ILVGDHK Sbjct: 617 EKDLLAMTTTCAARHNFLFRLLQSK--CVLFEEAAEIQEAHIVACLTPHTEHVILVGDHK 674 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P S+K SLFERL+ G+ RLN+QYRM I L Y+ Sbjct: 675 QLQPFSGSRKVPQ-----ISLFERLIVAGLPFSRLNLQYRMRSCISELLVPSIYDELLC- 728 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 S + +F S N EA + ++ E Sbjct: 729 SESVKEYEDIRLMSKNLYFVQHNQPEHCMS------------DMSIGNLYEAGVLAKLTE 776 Query: 181 YLL-RSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLV 239 +L+ ++ DI +++PYNGQ+E I+N L V+V++VDSFQG E +I++LSLV Sbjct: 777 FLIQKAQYKHSDIVILSPYNGQIECIKNALPQNYR-STVQVASVDSFQGLEANIVLLSLV 835 Query: 240 RSNRNGEIGFLRDERRLNV 258 RS +G IGFLR R+ V Sbjct: 836 RSYISGRIGFLRQANRVCV 854 >tr:O74465_SCHPO SPCC1739.03 protein. Schizosaccharomyces pombe (Fission yeast). Length = 1015 Score = 164 bits (415), Expect = 1e-40 Identities = 89/261 (34%), Positives = 130/261 (49%), Gaps = 18/261 (6%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A V+ MT TG R L E+ + I+EAA LE + + + ++ +L+GDHK Sbjct: 682 GANVIGMTTTGLNKYRDIL--ERINPKICFIEEAADVLEGPIIPAVFPSLEQLVLIGDHK 739 Query: 61 QLPPTIKSKKA-AAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 QL P + L S+FERLVE + RL +Q RMHP+I RL S+ YE Sbjct: 740 QLRPGCSTYALRQDPFNLSISMFERLVENDMEYTRLTMQRRMHPQIRRLVSS-VYEDLSD 798 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 +I+ + FF T I DN G S N EA+ +V+ Sbjct: 799 YEITKYWPSIPGMGEIRRFFLTHSRIE-----DNDGF-------ASKINLFEAQMLVQFA 846 Query: 180 EYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSL--KPVEVSTVDSFQGREKDIIILS 237 YL+ +GV P+ I +T Y Q +LI +L+ + ++V+TVD +QG E D+++LS Sbjct: 847 VYLINNGVEPQKITCLTFYAAQKDLIERLLSESLNREKHFIKVATVDGYQGEENDVVLLS 906 Query: 238 LVRSNRNGEIGFLRDERRLNV 258 LVR+N E+GFL R+ V Sbjct: 907 LVRNNDRTEVGFLSSPHRVCV 927 >tr:Q7XUD6_ORYSA OSJNBa0088A01.9 protein. Oryza sativa (japonica cultivar-group). Length = 769 Score = 163 bits (414), Expect = 2e-40 Identities = 80/226 (35%), Positives = 106/226 (46%), Gaps = 35/226 (15%) Query: 27 DVVIIDEAAQALEAECLIPLLLAK-KKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERL 85 ++++DEAAQ E E LIPL L K IL+GD QLP T+KSK A SLFERL Sbjct: 519 QLLVVDEAAQLKECEGLIPLRLPTLKHAILIGDECQLPATVKSKVC-EDASFGRSLFERL 577 Query: 86 VELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFI 145 LG LN+QYRMHP I P+ FY+ L + + +++ Sbjct: 578 SSLGHEKHLLNMQYRMHPSISIFPNISFYDRKLLDAPNVKQKE-----------HRKKYL 626 Query: 146 VPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELI 205 L F YS+ N +A +GVI PY QV I Sbjct: 627 PGLMF-----------GPYSFFNIEDAH----------SKTKNKVTVGVICPYTAQVLAI 665 Query: 206 RNIL-NSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFL 250 + L + V++++ D FQG E+DII LS VRSN +G +GFL Sbjct: 666 QQKLGKMKFDPVIVKINSGDGFQGGEEDIITLSTVRSNSDGAVGFL 711 >tr:Q23388_CAEEL Hypothetical protein ZK1067.2. Caenorhabditis elegans. Length = 2219 Score = 163 bits (413), Expect = 3e-40 Identities = 82/264 (31%), Positives = 123/264 (46%), Gaps = 22/264 (8%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 ++ T TG + R LEK ++I++EAA+ LEA + ++ + +++GDHKQL Sbjct: 1209 MIIGATTTGCSRLRP--TLEKVGPRILIVEEAAEVLEAHIISAMISTVEHVVMIGDHKQL 1266 Query: 63 PPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDI 122 P + GL S+FERLVE G+ +L Q+RM+ I L + N Sbjct: 1267 RPNPAVHELGVAYGLRISMFERLVERGLPFSQLRQQHRMNLTISDKIVKLSFYDNVTDAE 1326 Query: 123 SSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYL 182 + A FF + EE P+ S+ N E V +V++L Sbjct: 1327 NVGLYPDVQGMATNLFFWSHT------------SMEESPDEVSWLNKHEISMTVALVKHL 1374 Query: 183 LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKP----VEVSTVDSFQGREKDIIILSL 238 L+ DI V+ Y+ Q L+ + P + V TVDSFQG+E+ I+I+SL Sbjct: 1375 LKQNYTTNDIVVLATYSAQKNLMYREYANVFGSTPDSNVIPVETVDSFQGKERKIVIVSL 1434 Query: 239 VRSNRNG----EIGFLRDERRLNV 258 VRS+R G IGFL R+ V Sbjct: 1435 VRSHRGGRENTGIGFLAVANRICV 1458 >tr:Q7QL33_ANOGA ENSANGP00000002028 (Fragment). Anopheles gambiae str. PEST. Length = 1053 Score = 163 bits (413), Expect = 3e-40 Identities = 87/300 (29%), Positives = 131/300 (43%), Gaps = 51/300 (17%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 K+V +TC G + K FD I+DEA Q + + PLL + K+F+LVGD +QL Sbjct: 701 KIVGVTCQGTGHPL----INKRLFDFCIVDEATQVFQPSLIRPLLRS-KRFLLVGDPEQL 755 Query: 63 PPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEG------ 116 PP IKS +A + G ES+F RL + G S L QYRM+ + +L + Y G Sbjct: 756 PPVIKSVEARSL-GACESMFHRLDQEG-SFYILPTQYRMNRVLTKLANEFAYNGKLICGN 813 Query: 117 ----NGLVDIS--SVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPE-------G 163 N +++ RR+ + Q + + VD + Sbjct: 814 DIVENNTINLPNLENIRRIYEVERWLLKMISNQIDLSVVLVDTGNTYQMNLNYRKLNEIS 873 Query: 164 YSYQ-----------NPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSR 212 S N E VV + L++GV PE IG+I P+ QVELIR ++ Sbjct: 874 TSITDDQSKNAMNCTNVSEIAIVVYVSWAFLQAGVEPESIGIIAPFRAQVELIRKLMKKL 933 Query: 213 CSLKPVEVSTVDSFQGREKDIIILSLVRSNR--------------NGEIGFLRDERRLNV 258 + ++T+D FQG++K II+ S +S+ + L D+ RL V Sbjct: 934 FEKQKYTLNTIDQFQGKDKKIILFSCTKSSNLSDDIWINKGKERSSHGYEILSDKSRLTV 993 >tr:Q870R3_NEUCR Hypothetical protein B1D14.220. Neurospora crassa. Length = 1204 Score = 161 bits (407), Expect = 1e-39 Identities = 86/264 (32%), Positives = 119/264 (45%), Gaps = 24/264 (9%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 V+ T TG R LA + + ++I+EAA+ E L + ++ +LVGDH Q+ Sbjct: 604 VIGCTTTGLTKYRAFLA--GLQPNTLLIEEAAETREGNITSALYPSLQQLVLVGDHAQMS 661 Query: 64 PT--IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVD 121 P I+ L SLFERL+ L ++ + LN Q RM PE+ R+ S + N L+D Sbjct: 662 PRCDIRWLG-QHPYNLNVSLFERLINLKMNHIMLNQQRRMRPELRRIVSPFY---NNLLD 717 Query: 122 ISSVA--RRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 SV + G + E S N EAE + Sbjct: 718 HPSVQSPQARPDVPGMGGRNCW---------FFDHEWIERTTSDNSKLNDQEAEMITLFF 768 Query: 180 EYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKP--VEVSTVDSFQGREKDIIILS 237 YL+ +GV E I ++T Y GQ L+ L SL V TVDS+QG E DI++LS Sbjct: 769 VYLVSNGVSSEKITILTYYRGQRSLLLRRLKGHPSLTGCYFNVFTVDSYQGEENDIVLLS 828 Query: 238 LVRSNRN---GEIGFLRDERRLNV 258 LVRS IGFL + R V Sbjct: 829 LVRSPDPVYGRNIGFLDNPHRAVV 852 >tr:Q9CC95_MYCLE Hypothetical protein ML1098. Mycobacterium leprae. Length = 1152 Score = 159 bits (404), Expect = 3e-39 Identities = 71/268 (26%), Positives = 100/268 (37%), Gaps = 33/268 (12%) Query: 5 VAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPP 64 + A + D+++IDEA Q A I + A +L+GD +QLP Sbjct: 851 GCVIGGTAWDFANRNRVPPGSLDLLVIDEAGQFCLANT-IAVAPAAANLMLLGDPQQLPQ 909 Query: 65 TIK-SKKAAAKAGLEESLFERLVEL-GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDI 122 + + + L E L L+ YRMHP IC S L YEG Sbjct: 910 VSQGTHPEPVNTSALDWLVEGQRTLPNERGYFLDRSYRMHPAICAAVSTLSYEGK----- 964 Query: 123 SSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYL 182 Q V + +G S ++P EA + +E L Sbjct: 965 LHAHTEYTAARRLN----EYQPGVHVL--------AVHHQGNSTESPEEAGAITAEIERL 1012 Query: 183 LR---------SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDI 233 L + DI V+ PYN QV L+R L S V V TVD FQG + + Sbjct: 1013 LGTPWTDEHGTRPLDVSDILVLAPYNAQVALVRQQLMSAGF-SGVRVGTVDKFQGGQAPV 1071 Query: 234 IILSLVRSN---RNGEIGFLRDERRLNV 258 + +S+ S+ I FL + RLNV Sbjct: 1072 VFISMTSSSVEVVPRGISFLLNRNRLNV 1099 >tr:Q51H49_ENTHI Regulator of nonsense transcripts 1, putative. Entamoeba histolytica HM-1:IMSS. Length = 915 Score = 159 bits (402), Expect = 5e-39 Identities = 80/250 (32%), Positives = 116/250 (46%), Gaps = 37/250 (14%) Query: 10 TGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSK 69 + L K KF I+DEAAQ+LE E L ++ +K +L+GD +QL PT S Sbjct: 604 CSTLTICTRSTLLKQKFFASIVDEAAQSLEPETLAGIINVRKT-VLIGDIQQLQPTCLST 662 Query: 70 KAAAKAGLEESLFERLVEL-GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARR 128 +A +AG ++S+FER + + L QYRMHP I + +FY +S R Sbjct: 663 EA-REAGFQKSMFERFMANTQIKRTMLKTQYRMHPAISEFSNKMFYSSKLENGVSIDDRF 721 Query: 129 LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVP 188 FFP P+ F++ G E G Sbjct: 722 DNRII---NFFPDYT--NPIMFINCDGTEHYGSSGTK----------------------- 753 Query: 189 PEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIG 248 +IG+I+PY Q ELI ++ ++V+ +D FQG EK+ II S VRSN+ +G Sbjct: 754 -NEIGIISPYQAQQELISQYVS-----TKIKVANIDGFQGNEKEYIIFSCVRSNQTLGVG 807 Query: 249 FLRDERRLNV 258 F+ D +RLNV Sbjct: 808 FVNDYKRLNV 817 >tr:Q582S3_9TRYP Hypothetical protein. Trypanosoma brucei. Length = 1414 Score = 158 bits (401), Expect = 6e-39 Identities = 95/261 (36%), Positives = 132/261 (50%), Gaps = 12/261 (4%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A VV +T TG AS L + ++I++EAA+ LE++ L + + ++ +L+GDH Sbjct: 1105 GADVVGLTTTGCASN--QNLLRSLRPTILIVEEAAEVLESQLLACMTDSLQQVVLIGDHF 1162 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P +++ L SLFERL + L Q RMHP I RL FY N L+ Sbjct: 1163 QLRPKVETFLYEKFNRLNMSLFERLSSRMRP-ICLREQRRMHPLISRLVRP-FYGPNMLL 1220 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVP---LSFVDNSGVEEEEPEGYSYQNPGEAEFVVE 177 D + +R + G T + F +S E E P S N EAE V++ Sbjct: 1221 DNKDLYKRPFVCT--KGVLHTDAVPGLARRVFFWRHSQPESEAPGSRSKVNLLEAEMVLK 1278 Query: 178 IVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILS 237 +V +L GV + I VITPY Q+ L+R L V VSTVD FQG E D++ILS Sbjct: 1279 LVAHLTTEGVHQKSITVITPYLAQLRLLRTTLRLHAF-SDVCVSTVDLFQGDENDVVILS 1337 Query: 238 LVRSNRNGEIGFLRDERRLNV 258 LVR+ R E FL+ R+ V Sbjct: 1338 LVRTERLTE--FLKMRNRMIV 1356 >tr:Q7XPT5_ORYSA OSJNBa0083N12.5 protein. Oryza sativa (japonica cultivar-group). Length = 2646 Score = 158 bits (401), Expect = 6e-39 Identities = 87/257 (33%), Positives = 117/257 (45%), Gaps = 49/257 (19%) Query: 9 CTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKS 68 CT ++S R +E DV+I+DEAAQ Sbjct: 515 CTSSSSYR-LHHMEIAPLDVLIVDEAAQVC------------------------------ 543 Query: 69 KKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARR 128 +AG SLFERLV L LN+QYRM P I P+ FY L + ++ Sbjct: 544 ----KEAGFGISLFERLVVLDFEKHLLNIQYRMDPRISLFPNVQFYGRKILDGPNVMSSV 599 Query: 129 LEYDSANPGFFPTPQFIVPLSFVDNS-GVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGV 187 D N F +F++ S G EE+E G S++N E V+ +++ + ++ Sbjct: 600 YNKDYTNLPFGTY-------AFINISDGREEKEGTGNSWRNLVEVAVVLHLIQTIFKTWK 652 Query: 188 PPE---DIGVITPYNGQVELIR---NILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRS 241 IGVI+PY+ QV+ I L C V V +VD FQG E DIIILS VRS Sbjct: 653 RKGQMLSIGVISPYSSQVDSIESRLGKLYDTCDGFHVRVKSVDGFQGEEDDIIILSTVRS 712 Query: 242 NRNGEIGFLRDERRLNV 258 N G +GFL DE+R NV Sbjct: 713 NVKGIVGFLADEQRTNV 729 >tr:Q8MQQ9_DROME LD17208p (Fragment). Drosophila melanogaster (Fruit fly). Length = 1261 Score = 158 bits (400), Expect = 8e-39 Identities = 89/276 (32%), Positives = 130/276 (47%), Gaps = 28/276 (10%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPL---LLAKKKFILVGDH 59 ++V T + A + V +DEAA + EAE L+ + L IL GDH Sbjct: 664 RIVICTLSLAGKLSTGGFAANNVYTHVFVDEAAASTEAEVLMGITCTLSPTLNLILSGDH 723 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERL------------VELGVSVVRLNVQYRMHPEICR 107 KQL P ++S++A GL +LFERL RL +R HPEI Sbjct: 724 KQLGPVLQSQRANEW-GLGLTLFERLLQRKCYQVEEDGSYNASVQTRLIRNFRSHPEIVS 782 Query: 108 LPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQ 167 L +N++YEG +E +F P P+ F G S Sbjct: 783 LYNNMYYEG-----HLRTEAPMEIVCRFHNWFYLPNATFPIMFHSVFGTTMNTKSSVSLC 837 Query: 168 NPGEAEFVVEIVEYLLRSGVPPE-----DIGVITPYNGQVELIRNILNSRCSLKPVEVST 222 N E + V++ V+ L+ G+ E DIG+I+PY Q + I+ LN R + ++ + Sbjct: 838 NNKEIDVVMDYVKDLMYFGLNGEKLLQTDIGIISPYKNQYQRIQEQLNMR-NWSQIDCGS 896 Query: 223 VDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 V+ FQG+EK +II+S VRS ++GFL +ERRLNV Sbjct: 897 VELFQGKEKHVIIVSFVRS-FTPKLGFLNNERRLNV 931 >tr:Q9V6W1_DROME CG6701-PA. Drosophila melanogaster (Fruit fly). Length = 1251 Score = 158 bits (399), Expect = 1e-38 Identities = 89/276 (32%), Positives = 130/276 (47%), Gaps = 28/276 (10%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPL---LLAKKKFILVGDH 59 ++V T + A + V +DEAA + EAE L+ + L IL GDH Sbjct: 654 RIVICTLSLAGKLSTGGFAANNVYTHVFVDEAAASTEAEVLMGITCTLSPTLNLILSGDH 713 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERL------------VELGVSVVRLNVQYRMHPEICR 107 KQL P ++S++A GL +LFERL RL +R HPEI Sbjct: 714 KQLGPVLQSQRANEW-GLGLTLFERLLQRKCYQVEEDGSYNASVQTRLIRNFRSHPEIVS 772 Query: 108 LPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQ 167 L +N++YEG +E +F P P+ F G S Sbjct: 773 LYNNMYYEG-----HLRTEAPMEIVCRFHNWFYLPNATFPIMFHSVFGTTMNTKSSVSLC 827 Query: 168 NPGEAEFVVEIVEYLLRSGVPPE-----DIGVITPYNGQVELIRNILNSRCSLKPVEVST 222 N E + V++ V+ L+ G+ E DIG+I+PY Q + I+ LN R + ++ + Sbjct: 828 NNKEIDVVMDYVKDLMYFGLNGEKLLQTDIGIISPYKNQYQRIQEQLNMR-NWSQIDCGS 886 Query: 223 VDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 V+ FQG+EK +II+S VRS ++GFL +ERRLNV Sbjct: 887 VELFQGKEKHVIIVSFVRS-FTPKLGFLNNERRLNV 921 >tr:Q50PJ7_ENTHI Helicase, putative. Entamoeba histolytica HM-1:IMSS. Length = 896 Score = 156 bits (395), Expect = 3e-38 Identities = 82/258 (31%), Positives = 120/258 (46%), Gaps = 32/258 (12%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFIL-VGDHK 60 A +V +TC + + L +D++++DEA Q +E LIP+L K I+ VGD Sbjct: 621 ASIVGVTCASS-----TNPLLNHSYDIILLDEATQTIEPMLLIPILRFNPKCIVCVGDPM 675 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P +++ L +LF+RL L + + L VQYR P I + + L+Y GN Sbjct: 676 QLDPVLQTDH------LSATLFQRLCSLEIP-IMLKVQYRCCPPISNIVNRLYYNGNLKN 728 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + + S+N G SY + E V +I+ Sbjct: 729 GANVYNQLSLIPSSNEIILCYHDVDDEKIL------------GSSYYSHFELCVVNQIIS 776 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVR 240 L + +P +GVI+ Y Q E L S S K + V+T+D+FQG EKDII+LS VR Sbjct: 777 ILSQLLIPLNRVGVISFYKQQCEY----LASSISQKEITVATIDAFQGAEKDIILLSFVR 832 Query: 241 SNRNGEIGFLRDERRLNV 258 N FL +RLNV Sbjct: 833 ---NKHSSFLESAKRLNV 847 >tr:Q51B12_ENTHI Regulator of nonsense transcripts, putative. Entamoeba histolytica HM-1:IMSS. Length = 909 Score = 156 bits (395), Expect = 3e-38 Identities = 81/242 (33%), Positives = 114/242 (47%), Gaps = 19/242 (7%) Query: 18 SLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGL 77 F IDEA Q E +CL P L + + +L+GD +QL P I S +A KAG Sbjct: 612 KNTFNDINFLCTFIDEATQCTEYDCLFPALRSP-RLVLLGDIQQLKPVILSDEA-KKAGF 669 Query: 78 EESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPG 137 + S+FERL+ V LN QYRMHP I LP+ LFY + ++ +N Sbjct: 670 DISMFERLLHCKVRRTLLNEQYRMHPGISILPNTLFYNRK-------IIDGTRFERSNIS 722 Query: 138 FFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLL-RSGVPPEDIGVIT 196 FP + + +E S N EAE E+ +L + + +DI +T Sbjct: 723 IFPNKKVPIVFICHT---GKERYCNDGSLFNDTEAEICKEVYLFLRNEAKIKIKDIEFLT 779 Query: 197 PYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRL 256 PYN Q ++ C ++ S++DSFQG E D +I S VRSN F+ D R+ Sbjct: 780 PYNSQKVYAKDY----CQIE--RASSIDSFQGNETDYVIFSPVRSNYVKGAKFIGDFHRV 833 Query: 257 NV 258 NV Sbjct: 834 NV 835 >tr:Q869R3_DICDI Similar to Homo sapiens (Human). Protein KIAA1404 (Hypothetical protein). Dictyostelium discoideum (Slime mold). Length = 1638 Score = 156 bits (395), Expect = 3e-38 Identities = 87/273 (31%), Positives = 118/273 (43%), Gaps = 20/273 (7%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A+V++ T TGA+ R E K V+II+E A LE + L + + IL+GDHK Sbjct: 980 GAEVISATITGAS--RMKQLFESLKIKVLIIEECALTLEGQITACLPSSIQHCILIGDHK 1037 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P K L S+FER+VE L Q RM P I + ++ L Sbjct: 1038 QLKPICTDHTLLTKFNLNISIFERIVENKGRCSTLATQRRMVPSISQFVVPVYP---NLQ 1094 Query: 121 DISSVARRLEYDSA-NPGFFPTPQFIVPLSF-VDNSGVEEEEPEGYSYQNPGEAEFVVEI 178 + SSV + +SA F N +EP S N EA + Sbjct: 1095 NHSSVVEKERINSADGYRSIVRGVLYNVYFFDHSNRESRAQEPHINSKSNAFEARLITSF 1154 Query: 179 VEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-------------PVEVSTVDS 225 YLL PE I ++ PY GQ+ I + +N + + V TVD Sbjct: 1155 ANYLLDQNYEPERITILAPYAGQLLEINDAINEKMKHSSNVPPQGQTHPLQRILVRTVDQ 1214 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 +QG E DIII+S VR+N GFL R+NV Sbjct: 1215 YQGEENDIIIISSVRNNERNVAGFLSLTNRINV 1247 >tr:Q6LRS2_PHOPR Hypothetical protein. Photobacterium profundum (Photobacterium sp. (strain SS9)). Length = 1653 Score = 155 bits (393), Expect = 6e-38 Identities = 90/281 (32%), Positives = 128/281 (45%), Gaps = 28/281 (9%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 ++V T G +R L L + FD VI+DEA +A AE ++ L K+ +LVGDHK Sbjct: 1320 SKQLVCGTLVGVGRRR--LELTESSFDWVIVDEAGRAQAAELMVALQSG-KRVLLVGDHK 1376 Query: 61 QLPPTIKSKKAAAKAG--------LEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 QLPP + A ES FER + V L+ QYRM I L S Sbjct: 1377 QLPPFYHQQHLKLAAKKLELGRGIFYESDFER-AFKATTGVTLDTQYRMVEPIGDLVSEC 1435 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 FY + + + + P + + S + G E+ +G Y NP E Sbjct: 1436 FYAKDIGKLHTGRGHSPNWYAQLPSPWNKAVSWIDSSSPNPEGGEDVRGDGR-YYNPREV 1494 Query: 173 EFVVEIVEYL--------LRSGVPPED---IGVITPYNGQVELIRNILNSR----CSLKP 217 +++ ++ L L + E IG+IT Y Q E I N ++ Sbjct: 1495 RLLLDALQTLASDDNIAQLEQTITAEQPYPIGIITMYRQQKEEIENAISRAEWAGALRSL 1554 Query: 218 VEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 +++ TVDS+QG+E IIILSLVR N + GFLRD R+NV Sbjct: 1555 IKIDTVDSYQGQENKIIILSLVRDNSDKLQGFLRDAPRINV 1595 >tr:Q7S547_NEUCR Hypothetical protein. Neurospora crassa. Length = 1640 Score = 155 bits (392), Expect = 8e-38 Identities = 84/312 (26%), Positives = 129/312 (41%), Gaps = 66/312 (21%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A +V MT + A+ + L K K V+I +EAA+ +E + + + I +GDH+ Sbjct: 822 GADIVLMTTSRLAADNEMLR--KLKPKVIICEEAAEVMEPRMMAAFIPGVEHLIQIGDHQ 879 Query: 61 QLPPTIKSK-------KAAAKAGLEESLFERLVELGV-----SVVRLNVQYRMHPEICRL 108 QL P +++ + L+ SLFER V V++LN Q RM PEI L Sbjct: 880 QLRPLVQNSMQFSMETQVGKHYQLDRSLFERRVTGEPGMKPLPVIQLNEQQRMPPEISAL 939 Query: 109 PSNLFYEGNGLVDISSVARRLEYDSANPGFFPT-PQFIVPLSFVDNSGVEEEEPEGYSYQ 167 N Y L D S V R F + + G+ SY Sbjct: 940 IRNNVY--KDLRDGSRVKDRPMVVGLRDRLFWWDHDYEEDIGLNAAQGM--------SYI 989 Query: 168 NPGEAEFVVEIVEYLLRSG-VPPEDIGVITPYNGQVELIRNILNSRCSL----------- 215 N E +V +L+R G +DI ++TPY GQ+ ++ L+ + Sbjct: 990 NSREVAMATALVRHLVRQGVYEGKDIAILTPYAGQLLKLQAALDEYFEVVLSERDEERLA 1049 Query: 216 -----------------------------KPVEVSTVDSFQGREKDIIILSLVRSNRNGE 246 + ++TVD FQG + +II+SLVRSN+ + Sbjct: 1050 AQGFDKKNMVEDSEIPTQTLLPSGKMQMKDGIRLATVDGFQGEQAKVIIISLVRSNKKSK 1109 Query: 247 IGFLRDERRLNV 258 +GFLR + R+NV Sbjct: 1110 VGFLRLKNRINV 1121 >tr:Q9WZ87_THEMA Hypothetical protein. Thermotoga maritima. Length = 1289 Score = 154 bits (390), Expect = 1e-37 Identities = 67/291 (23%), Positives = 102/291 (35%), Gaps = 56/291 (19%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 K + + S L FD+VI DEA+Q E + ++ K+ I+ GD KQ Sbjct: 864 VKPCILMSPLSVSSFLDLDKFINYFDIVIFDEASQLRTPEAISAVVRG-KQIIVAGDPKQ 922 Query: 62 LPPTIKSKKA---AAKAGLEESLFERLVEL-----GVSVVRLNVQYRMHPEICRLPSNLF 113 LPPT K E L L E L YR E SN + Sbjct: 923 LPPTNFFKSYYELEDDEDEREPLDSFLDECIALPRVFKQGYLRWHYRSRDERLIAFSNHY 982 Query: 114 YEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAE 173 + G P F P + G++ E ++ G+ Sbjct: 983 FYGEN---------------------PLITFPSPKYRNSDQGIKLVYVENGTWDRAGKRV 1021 Query: 174 FVVEIVEYLLR-----SGVPPEDIGVITPYNGQVELIRNILNSRC-------------SL 215 +E ++ + P IGV+T Q +LI N+L R S Sbjct: 1022 NTMEALKVVDIVIEHFQKHPDRSIGVVTMNTSQSDLIENLLQRRLMEYPHLMDVIFKESN 1081 Query: 216 KPVEVSTVDSFQGREKDIIILSLVRSN--------RNGEIGFLRDERRLNV 258 +P + ++++ QG E+D II+S+ + G + RRLNV Sbjct: 1082 EPFFIKSLENVQGDERDTIIISIGYARTPSGELFYNFGPLNNEGGWRRLNV 1132 >tr:Q7PTC1_ANOGA ENSANGP00000021787 (Fragment). Anopheles gambiae str. PEST. Length = 615 Score = 154 bits (390), Expect = 1e-37 Identities = 82/292 (28%), Positives = 118/292 (40%), Gaps = 38/292 (13%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIP---LLLAKKKFILVGDH 59 +V TC G S + + F VI+DEA Q LE E LIP + LVGD Sbjct: 284 RVTISTCLGIGSL-MMMHFDPNHFTHVIVDEAGQGLEPEVLIPICQVSRTVGSVTLVGDP 342 Query: 60 KQLPPTIKSKKAA---------------AKAGLEESLFERLVELGVS--VVRLNVQYRMH 102 KQL P + + ++ F V L + YR Sbjct: 343 KQLGPMVHFNEEQTWTSHLSLLERLLSLRLYSIDRQRFTGDTAGYDPRLVTLLRINYRSI 402 Query: 103 PEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPT--------PQFIVPLSFVDNS 154 P + L +++FY+ + VA F Sbjct: 403 PNVLSLYNDMFYDSALEPYVKEVADEDIQLLGAIRDILKLPKPSDSSEDSRKGFFFCGID 462 Query: 155 GVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVP-PEDIGVITPYNGQVELIRNILNSRC 213 G ++ P+ S+ N EA V +IVE L R P DIG+ITPY QV IR Sbjct: 463 GTNKQSPDSPSWFNSAEACMVHKIVERLYRGERCGPADIGIITPYVMQVRSIRRTF-DAA 521 Query: 214 SLKPVEVSTVDSFQGREKDIIILSLVRSN-------RNGEIGFLRDERRLNV 258 L+P ++ +V+ FQG+E+ +II+S VRS+ N +IGF+ +R+NV Sbjct: 522 MLEPPKIGSVEEFQGQERKVIIVSTVRSSSAYLAHDSNTKIGFISAPKRINV 573 >tr:Q59E56_DROME CG11513-PB, isoform B. Drosophila melanogaster (Fruit fly). Length = 1188 Score = 150 bits (379), Expect = 2e-36 Identities = 79/292 (27%), Positives = 122/292 (41%), Gaps = 43/292 (14%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIP---LLLAKKKFILVGDH 59 + ++ L F V+ DEA Q E E ++P L + + +L GD Sbjct: 833 HRITISTCTTLGNFLQLGFPAGHFTHVLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDP 892 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQ-------------------YR 100 +QL +I + + A+K G S ERL L S R ++Q YR Sbjct: 893 RQL-QSIVTSRIASKMGFSISFLERL--LERSPYRKDLQRFPESSGYNPLVLTKLLYNYR 949 Query: 101 MHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVP----LSFVDNSGV 156 P I + S LFY+ + +S R + + +P F G Sbjct: 950 ALPSIMSIYSRLFYDDELIPVLSEKDSRESRLLSKLRCVFESEKDIPQAHGTFFYGIIGE 1009 Query: 157 EEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK 216 + + S+ NP E V + L R+ V + IG+ITPY QV +L S Sbjct: 1010 NRQNNDSPSWFNPQEVREVFLMTIALYRANVTADQIGIITPYQKQV----KMLRSMFIGT 1065 Query: 217 PV---EVSTVDSFQGREKDIIILSLVRSNR-------NGEIGFLRDERRLNV 258 V ++ +V+ FQG+E+DII++S VRS+ +GF+R +RLNV Sbjct: 1066 DVVMPKIGSVEEFQGQERDIILISTVRSSEEILRMDARFSLGFVRCSKRLNV 1117 >tr:Q6EQ49_ORYSA DNA helicase-like. Oryza sativa (japonica cultivar-group). Length = 257 Score = 149 bits (378), Expect = 3e-36 Identities = 76/196 (38%), Positives = 100/196 (51%), Gaps = 11/196 (5%) Query: 73 AKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLE 130 + GL SL ER L + +L QYRMH I SN Y+G L SVA L Sbjct: 1 MQGGLAMSLLERASSLHNELLTTKLTTQYRMHDSIASWASNEMYDGF-LKSSPSVASHLL 59 Query: 131 YDSANPGF-------FPTPQFIVPLSFVDNSGVEEEEPEGY-SYQNPGEAEFVVEIVEYL 182 D F +P ++ E +P G S+ N GEA+ V + V L Sbjct: 60 ADYPFIKETWITRCAFLLLDTRMPYGSLNIDCEEHLDPAGTGSFYNNGEADVVSQHVLNL 119 Query: 183 LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSN 242 ++ GV P I V +PY QV+L+R+ L VEVST+DSFQGRE D +++S+VRSN Sbjct: 120 VQCGVSPTAIAVQSPYIAQVQLLRDRLEDYPEASGVEVSTIDSFQGREADAVVISMVRSN 179 Query: 243 RNGEIGFLRDERRLNV 258 G +GFL D RR+NV Sbjct: 180 TLGAVGFLGDNRRMNV 195 >tr:Q68DW5_HUMAN Hypothetical protein DKFZp781B151 (Fragment). Homo sapiens (Human). Length = 2198 Score = 149 bits (377), Expect = 4e-36 Identities = 76/234 (32%), Positives = 107/234 (45%), Gaps = 28/234 (11%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFK---FDVVIIDEAAQALEAECLIPLLLAKKKFILVG 57 E+ ++ T + + A F VI+DEA Q+ E E L PL+ K ILVG Sbjct: 1701 ESHIICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVG 1760 Query: 58 DHKQLPPTIKSKKAAAKAGLEESL---FERLVELGV--------SVVRLNVQYRMHPEIC 106 D KQLPPT+ S KA G ++S+ F RL+E V +++L VQYRMHP+IC Sbjct: 1761 DPKQLPPTVISMKAQE-YGYDQSMMARFCRLLEENVEHNMISRLPILQLTVQYRMHPDIC 1819 Query: 107 RLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 PSN Y N + + A R D V + G E + SY Sbjct: 1820 LFPSNYVYNRNLKTNRQTEAIRCSSDW-----------PFQPYLVFDVGDGSERRDNDSY 1868 Query: 167 QNPGEAEFVVEIVEYL--LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPV 218 N E + V+EI++ + R V +IG+IT Y Q +I+ L+ K Sbjct: 1869 INVQEIKLVMEIIKLIKDKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGF 1922 >tr:Q73WX7_MYCPA Hypothetical protein. Mycobacterium paratuberculosis. Length = 1140 Score = 149 bits (376), Expect = 5e-36 Identities = 72/269 (26%), Positives = 106/269 (39%), Gaps = 34/269 (12%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 + A + + D+++IDEA Q A I + A +L+GD +QLP Sbjct: 849 PGCVIGGTAWDFANANRIPPGSLDLLVIDEAGQFCLANT-IAVAPAAANLLLLGDPQQLP 907 Query: 64 PTIK-SKKAAAKAGLEESLFERLVEL-GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVD 121 + + + L L L+ YRMHP +C S L YEG D Sbjct: 908 QVSQGTHPEPVDTSALDWLVVGQRTLPDERGYFLDRSYRMHPAVCAAVSALSYEGRLHSD 967 Query: 122 ISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 + ARRL + + +G S ++P EA+ + V Sbjct: 968 ACTAARRL------------------DGCPPGVRLLSVDHQGNSTESPEEADAIAAAVTG 1009 Query: 182 LLR---------SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKD 232 LL + D+ V+ PYN QV L+R L S L V V TVD FQG + Sbjct: 1010 LLGASWTDEHGTRALTASDVLVLAPYNAQVALLRRRLGSAG-LDGVRVGTVDKFQGGQAP 1068 Query: 233 IIILSLVRSN---RNGEIGFLRDERRLNV 258 ++ +S+ S+ I FL + RLNV Sbjct: 1069 VVFISMTASSVDVVPRGISFLLNRNRLNV 1097 >tr:Q6LRT1_PHOPR Hypothetical protein. Photobacterium profundum (Photobacterium sp. (strain SS9)). Length = 1658 Score = 146 bits (368), Expect = 4e-35 Identities = 77/290 (26%), Positives = 129/290 (44%), Gaps = 40/290 (13%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 ++V TC G + +A ++D VIIDEAA+++ +E I + K+ +LVGDHK Sbjct: 1311 SRQLVTGTCVGIGQRHLGIA--DNQYDWVIIDEAARSIASELAIAMQSG-KRVLLVGDHK 1367 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELG-----------------VSVVRLNVQYRMHP 103 QLPP S L+ + ++ +++ S L QYRM P Sbjct: 1368 QLPPL-YSDAHKRALALKLGIADKEIDVDSVLQSDFARAFESPYGMQSGASLLTQYRMAP 1426 Query: 104 EICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEG 163 I + S+ FY+G + + R + ++ + E G Sbjct: 1427 PIGNIVSSTFYKGE----LKNGDREIPDIYSDAPEALQSVVTWLDTSKLGQKCYHSEDRG 1482 Query: 164 YSYQNPGEAEFVVEIVEYL---------LRSGVPPED--IGVITPYNGQVELIRNILNS- 211 S N EA+ ++ +++ + L++ V D IGVI Y Q +IR Sbjct: 1483 VSIYNRAEADIIINLLKKISNKPDFVASLKNNVKKGDAAIGVICMYGEQKRIIRQKFKEI 1542 Query: 212 ---RCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 + V++ TVDS+QG+E II+LS+ RS+++ + FL+ R+NV Sbjct: 1543 EWQDDFKELVKIDTVDSYQGKENRIIVLSVTRSSKDKKPKFLKTPNRINV 1592 >tr:O23408_ARATH Similar to SEN1 protein - yeast (SEN1 like protein). Arabidopsis thaliana (Mouse-ear cress). Length = 555 Score = 143 bits (362), Expect = 2e-34 Identities = 78/264 (29%), Positives = 102/264 (38%), Gaps = 56/264 (21%) Query: 10 TGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSK 69 T + S LA FDVVIIDEAAQA+E LIPL K+ LVGD KQLP T+ S Sbjct: 210 TLSFSGSALLAKSNRGFDVVIIDEAAQAVEPATLIPLATRCKQVFLVGDPKQLPATVIST 269 Query: 70 KAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPE------------------------- 104 A +G S+FERL + G V L QYRMHPE Sbjct: 270 VAQ-DSGYGTSMFERLQKAGYPVKMLKTQYRMHPELIPISQTKPKIVVSLILTPMIASYF 328 Query: 105 -----------ICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFI-VPLSFVD 152 I PS FYEG A+ ++ Sbjct: 329 TLQTIFLTENQIRSFPSKQFYEGALEDGSDIEAQTTRD---------WHKYRCFGPFCFF 379 Query: 153 NSGVEEEEPEG---YSYQNPGEAEFVVEIVEYLLR---SGVPPEDIGVITPYNGQVELIR 206 + +E S N E EFV+ I L+ + +I+PYN QV+ + Sbjct: 380 DIHEGKESQHPGATGSRVNLDEVEFVLLIYHRLVTMYPELKSSSQLAIISPYNYQVKTFK 439 Query: 207 NILNSRCSLKP---VEVSTVDSFQ 227 + + V+++TVD FQ Sbjct: 440 DRFKEMFGTEAEKVVDINTVDGFQ 463 >tr:Q8I580_PLAF7 Hypothetical protein. Plasmodium falciparum (isolate 3D7). Length = 2033 Score = 141 bits (357), Expect = 8e-34 Identities = 56/182 (30%), Positives = 81/182 (44%), Gaps = 24/182 (13%) Query: 90 VSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLS 149 ++ LN QYR HP I + S+LFY R ++ ++ Sbjct: 1727 NKLIILNKQYRCHPSISEICSHLFYNN----------RIKNAKRTMKIKIHYDKYNAHVN 1776 Query: 150 FVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNIL 209 + +E SY N EA ++ I E ++ + + P+DIG+I+ Y Q IRN L Sbjct: 1777 LILIRSHYKEILHNSSYINIKEARIIISICENMIDNDINPDDIGIISLYRSQSSYIRNKL 1836 Query: 210 NSRC---SLKPVEVSTVDSFQGREKDIIILSLVRSN-----------RNGEIGFLRDERR 255 N+ LK V+VSTVDSFQG EK+II+ S V N E F+ DE Sbjct: 1837 NNSKKANQLKRVKVSTVDSFQGIEKEIILFSCVMCPTQLEKKREKIKNNEEEKFVVDEHF 1896 Query: 256 LN 257 + Sbjct: 1897 VT 1898 Score = 76.4 bits (187), Expect = 4e-14 Identities = 36/157 (22%), Positives = 55/157 (35%), Gaps = 21/157 (13%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK-KKFILVGDH 59 + K V + + + K + +I+DE Q E L + KKFI +GD Sbjct: 1537 KNKRVIAGTCRSIHLFEKMNTIKHNINYLIVDECTQINELTLLRFFMKYPIKKFIFIGDV 1596 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVEL----------GVSVVRLNVQYRMHPEICRLP 109 KQL +KSK L S+F RL+E +NV+ + E + Sbjct: 1597 KQLGFVLKSKN-----DLSRSMFSRLIENELFIKYYFVQNEKNKIVNVEDNIQNENTNIN 1651 Query: 110 SNLFYEG-----NGLVDISSVARRLEYDSANPGFFPT 141 +N Y N L D + + N Sbjct: 1652 NNHIYCENIKSPNNLNDYTKNIDNIIDIVNNLNDQEY 1688 >tr:Q88GN0_PSEPK DNA helicase-related protein. Pseudomonas putida (strain KT2440). Length = 2207 Score = 141 bits (356), Expect = 9e-34 Identities = 79/286 (27%), Positives = 109/286 (38%), Gaps = 50/286 (17%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 K+ S + L FD+VI DEA+Q + + + K+ ++VGD KQL Sbjct: 1532 KLTPCLLMSPLSIAQYLPPASTPFDLVIFDEASQIPVWDAIGAMARG-KQVVMVGDPKQL 1590 Query: 63 PPTIKSKKA---AAKAGLEESLFERLVEL---GVSVVRLNVQYRMHPEICRLPSNLFYEG 116 PPT +A A +E L L E + + LN YR E SN Y G Sbjct: 1591 PPTSFFDRAESTAEDEDVEADLESILDECISANLPMRNLNWHYRSRHESLIAFSNQRYYG 1650 Query: 117 NGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEF-V 175 + LV S + V V +G S N EA V Sbjct: 1651 SKLVTFPSPFTADKA-------------------VKLCPVAGVYDKGGSRTNLIEARALV 1691 Query: 176 VEIVEYLLRSGVPPED--IGVITPYNGQVELIRNILNSRC-------------SLKPVEV 220 ++V L S +GV+T Q +LI ++L+ C L+PV V Sbjct: 1692 ADLVARLQSSAFRESRRTVGVVTFNGEQQKLIMDMLDEACRKDPSLDSYFAESELEPVFV 1751 Query: 221 STVDSFQGREKDIIILSL--------VRSNRNGEIGFLRDERRLNV 258 ++S QG E+DII S V S G + ERRLNV Sbjct: 1752 KNLESVQGDERDIIYFSTTYGKDAAGVMSMNFGPMNRPGGERRLNV 1797 >tr:Q7QGH5_ANOGA ENSANGP00000015391 (Fragment). Anopheles gambiae str. PEST. Length = 998 Score = 139 bits (351), Expect = 4e-33 Identities = 69/279 (24%), Positives = 101/279 (36%), Gaps = 78/279 (27%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLA--KKKFILVGDH 59 + + + + SL L K F + +DEAAQA+E E ++PL LA + + IL Sbjct: 648 KHRIVVVTLNISMELASLDLPKGHFTHIFLDEAAQAMECEAIMPLALAGERTRIIL---- 703 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 L YR H I R S LFYE Sbjct: 704 -----------------------------------LCENYRAHDAIIRFTSELFYE---- 724 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 G P + PL+F G + ++ ++ N E VVE V Sbjct: 725 -----------QKLIASGKQPRHEKFYPLTFFTTRGEDVQDKNSTAFYNNSEVYEVVERV 773 Query: 180 EYLLR------SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDI 233 L + + + IG++TPY QV IR+ L R + + V V + QG++ Sbjct: 774 CELRKKWPSAWGKINDQSIGIMTPYADQVFRIRSELRKR-RMGGISVERVANVQGKQFRA 832 Query: 234 IILSLVRSNRNGEI---------------GFLRDERRLN 257 I LS VR+ R GFL + + LN Sbjct: 833 IFLSTVRTRRTCNANASEGAGTSSEEVDYGFLSNSKLLN 871 >tr:Q8P8Y4_XANCP DNA helicase related protein. Xanthomonas campestris (pv. campestris). Length = 2224 Score = 139 bits (350), Expect = 5e-33 Identities = 73/286 (25%), Positives = 104/286 (36%), Gaps = 50/286 (17%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 K+ S + L FD+VI DEA+Q + + + + ++VGD KQL Sbjct: 1539 KLTPCLLMSPLSIAQYLQAGANAFDLVIFDEASQIPVWDAIGAIARG-HQVVMVGDPKQL 1597 Query: 63 PPTIKSKKAA---AKAGLEESLFERLVEL---GVSVVRLNVQYRMHPEICRLPSNLFYEG 116 PPT +A +E L L E + LN YR E SN Y Sbjct: 1598 PPTSFFDRAESGLDDEDVEADLESILDECIGANLPTRNLNWHYRSRHESLIAFSNHAYYD 1657 Query: 117 NGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEF-V 175 GLV S V V +G + NP EA+ V Sbjct: 1658 GGLVTFPSPVTNDRA-------------------VSLQPVSGTYQKGGTRTNPAEAKALV 1698 Query: 176 VEIVEYLLRSGVPPE--DIGVITPYNGQVELIRNILNSR-------------CSLKPVEV 220 ++V L G IGV+T Q +LI ++L+ L+P+ V Sbjct: 1699 ADVVARLTAPGFRESGLTIGVVTFNAEQQKLIEDLLDEARRQDPRLEPYFAESELEPLFV 1758 Query: 221 STVDSFQGREKDIIILSLVRSN--------RNGEIGFLRDERRLNV 258 ++S QG E+D+I S+ G + ERRLNV Sbjct: 1759 KNLESVQGDERDLIYFSITYGPDPAGQLAMNFGPLNRQGGERRLNV 1804 >tr:Q8A0B7_BACTN DNA helicase. Bacteroides thetaiotaomicron. Length = 1124 Score = 138 bits (347), Expect = 1e-32 Identities = 78/293 (26%), Positives = 113/293 (38%), Gaps = 56/293 (19%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPL-LLAKK------KFILVGD 58 + T A+ K FDV I+DEA Q LE + L L + KFIL+GD Sbjct: 810 ILVGTVASISGKPELFRLKHFDVAIVDEATQILEPQLLGILCAKGENGKEGVGKFILIGD 869 Query: 59 HKQLPPTIKSKKAAAKA-----------GLEESLFERLVEL------GVSVV-RLNVQYR 100 HKQLP + ++ L++SLFERL L Q R Sbjct: 870 HKQLPAVVLQNTEQSEVYDEALSAVGLKNLKDSLFERLYRTARQHTDAHRTYDMLCRQGR 929 Query: 101 MHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEE 160 MHPE+ + FYEG L + F P P+ Sbjct: 930 MHPEVALFANQAFYEGRLLPVGLPHQLEDSGNINRLSF--YPSRPEPM------------ 975 Query: 161 PEGYSYQNPGEAEFVVEIVEYLLRSGVPPED----IGVITPYNGQVELIRNILNSRC--S 214 + N EA+ + + + D +G+ITPY Q+ LI+ + Sbjct: 976 -GSSAKTNHSEAKIAARLAATVYKEHSEAFDASRTLGIITPYRSQIALIKKEIEVLGISE 1034 Query: 215 LKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRD---------ERRLNV 258 L + + TV+ FQG E+D+II S N ++ FL + +R+LNV Sbjct: 1035 LNQILIDTVERFQGSERDVIIYSF-CVNYPYQLKFLSNLTEEDGILIDRKLNV 1086 >tr:Q9VUH9_DROME CG9425-PA, isoform A. Drosophila melanogaster (Fruit fly). Length = 2061 Score = 137 bits (346), Expect = 2e-32 Identities = 67/284 (23%), Positives = 100/284 (35%), Gaps = 83/284 (29%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--KKFILVGDH 59 + + + + +L L K F + +DEAAQA+E E ++PL LA + IL Sbjct: 927 RHRIVVVTLSISMELATLGLPKGLFTHIFLDEAAQAMECEAIMPLALANDSTRIIL---- 982 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 L YR H I R S LFYE Sbjct: 983 -----------------------------------LCENYRAHEAIIRFTSELFYE---- 1003 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 G P PL+F G + ++ ++ N E VVE V Sbjct: 1004 -----------QKLVASGKQPRHDRFYPLTFFTTRGEDVQDKNSTAFYNNAEVYEVVERV 1052 Query: 180 EYLLRS------GVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDI 233 L + + IG++TPY+ QV IR+ L R + + V V + QG++ Sbjct: 1053 SELRKRWPSAWGKLNDTSIGIMTPYSDQVFRIRSELRKR-RMGGISVERVLNVQGKQFRA 1111 Query: 234 IILSLVRSNRN--------------------GEIGFLRDERRLN 257 + LS VR+ R + GFL + + LN Sbjct: 1112 VFLSTVRTRRTCMPQGSAPGSASTTSIGDADADYGFLSNSKLLN 1155 >tr:Q89ZN3_BACTN Hypothetical protein. Bacteroides thetaiotaomicron. Length = 1605 Score = 134 bits (339), Expect = 1e-31 Identities = 63/282 (22%), Positives = 98/282 (34%), Gaps = 46/282 (16%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 ++ S + + + KFD+++ DEA+Q E + + K ++VGD KQ+ Sbjct: 1297 RMCPCMLMSPISVAQYIDTDADKFDLIVFDEASQMPTYEAVGAIARG-KNVVIVGDPKQM 1355 Query: 63 PPTIKSKKAAAKAG--LEESLFERLVELGV---SVVRLNVQYRMHPEICRLPSNLFYEGN 117 PPT E L L + L YR E SN Y N Sbjct: 1356 PPTSFFSVNTIDEDNIEMEDLESILDDCLALSIPSKYLLWHYRSKHESLIAFSNSEYYDN 1415 Query: 118 GLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVV- 176 L+ S + G S QN EA+ VV Sbjct: 1416 KLMTFPSPDNIESKVRMVAVDGYYDK-------------------GKSRQNQAEAQAVVD 1456 Query: 177 EIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK------------PVEVSTVD 224 EI L + + +GV+T Q LI ++L+ P+ + ++ Sbjct: 1457 EIARRLRSEELRKKSVGVVTFSVVQQALIEDLLSDLFIFHPELETFALECEEPLFIKNLE 1516 Query: 225 SFQGREKDIIILSLVRSN--------RNGEIGFLRDERRLNV 258 + QG E+D+I+ S+ G + ERRLNV Sbjct: 1517 NVQGDERDVILFSVGYGPDAEGRVSMNFGPLNRAGGERRLNV 1558 >tr:Q93NJ8_PSESY Hypothetical protein. Pseudomonas syringae (pv. syringae). Length = 1945 Score = 134 bits (338), Expect = 1e-31 Identities = 68/286 (23%), Positives = 106/286 (37%), Gaps = 55/286 (19%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 S + L ++ FD+VI DEA+Q + + + ++ ++ GD +Q+PPT Sbjct: 1289 PCMLMSPLSIAQFLPADQPPFDLVIFDEASQIAPWDAIGSIARG-RQVVIAGDPRQMPPT 1347 Query: 66 IKSKK--AAAKAGLEESLFERLVEL---GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 + A+ E + L E GV L+ YR E SN Y + L+ Sbjct: 1348 NFFNRGPNASDDDTAEDMESILDECLGAGVPSHSLSWHYRSRHESLIAFSNHRYYDSNLI 1407 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + R VE +G N EAE +V E Sbjct: 1408 TFPAAETRASAVEW-------------------RRVEGVYAKGKGRYNQAEAEAIVS--E 1446 Query: 181 YLLRSGVPP-----EDIGVITPYNGQVELIRNIL-NSRCSLKPVE------------VST 222 + R P IG+IT Q +LI ++L N+R +E V Sbjct: 1447 TVKRLTDPAFVAAGHSIGIITLNADQQKLINDLLDNARKQYPQIEPFFQDTQTEPVVVKN 1506 Query: 223 VDSFQGREKDIIILSL----------VRSNRNGEIGFLRDERRLNV 258 +++ QG E+D+I+L + V S G + RRLNV Sbjct: 1507 LETVQGDERDLIMLGIGYGPTEPGAQVMSMNFGPLNKDGGWRRLNV 1552 >tr:Q4ZT85_PSESY Hypothetical protein. Pseudomonas syringae pv. syringae B728a. Length = 1945 Score = 134 bits (338), Expect = 1e-31 Identities = 68/286 (23%), Positives = 106/286 (37%), Gaps = 55/286 (19%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 S + L ++ FD+VI DEA+Q + + + ++ ++ GD +Q+PPT Sbjct: 1289 PCMLMSPLSIAQFLPADQPPFDLVIFDEASQIAPWDAIGSIARG-RQVVIAGDPRQMPPT 1347 Query: 66 IKSKK--AAAKAGLEESLFERLVEL---GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 + A+ E + L E GV L+ YR E SN Y + L+ Sbjct: 1348 NFFNRGPNASDDDTAEDMESILDECLGAGVPSHSLSWHYRSRHESLIAFSNHRYYDSNLI 1407 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + R VE +G N EAE +V E Sbjct: 1408 TFPAAETRASAVEW-------------------RRVEGVYAKGKGRYNQAEAEAIVS--E 1446 Query: 181 YLLRSGVPP-----EDIGVITPYNGQVELIRNIL-NSRCSLKPVE------------VST 222 + R P IG+IT Q +LI ++L N+R +E V Sbjct: 1447 TVKRLTDPAFVAAGHSIGIITLNADQQKLINDLLDNARKQYPQIEPFFQDTQTEPVVVKN 1506 Query: 223 VDSFQGREKDIIILSL----------VRSNRNGEIGFLRDERRLNV 258 +++ QG E+D+I+L + V S G + RRLNV Sbjct: 1507 LETVQGDERDLIMLGIGYGPTEPGAQVMSMNFGPLNKDGGWRRLNV 1552 >tr:Q9X1D1_THEMA Helicase-related protein. Thermotoga maritima. Length = 245 Score = 134 bits (337), Expect = 1e-31 Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 7/185 (3%) Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPS-NLFYEGNGLVDISSVARRLEYDS 133 + L E FE S R V+Y++ + R+ N+F + + + + L + Sbjct: 27 SNLPEFEFEIYHLRPDSKKR-EVRYKIPKNVVRIHEVNIFGDFDPEIPEEANLSALTEIT 85 Query: 134 ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG 193 P + + + E + + S +NP EA+ V E+VE LL GV + IG Sbjct: 86 KAIVLSPKNVLVFIDTKNRSDRFERQRKDSPSRENPLEAQIVKEVVEKLLSMGVKEDWIG 145 Query: 194 VITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDE 253 +ITPY+ QV LIR ++ ++ VEV +VD FQGREK++II+S VRSN+NGEIGFL D Sbjct: 146 IITPYDDQVNLIRELIEAK-----VEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLEDL 200 Query: 254 RRLNV 258 RRLNV Sbjct: 201 RRLNV 205 >tr:Q64XY7_BACFR DNA helicase. Bacteroides fragilis. Length = 1153 Score = 133 bits (336), Expect = 2e-31 Identities = 87/303 (28%), Positives = 114/303 (37%), Gaps = 68/303 (22%) Query: 8 TCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL-------AKKKFILVGDHK 60 T A+ K +FDV IIDEA Q LE + L L A KFIL+GDHK Sbjct: 829 VGTVASISGKPELFRLKRFDVAIIDEATQILEPQLLGILCARSENGENAVGKFILIGDHK 888 Query: 61 QLPPTIKSK-----------KAAAKAGLEESLFERLVE-------------------LGV 90 QLP + ++A L++SLFERL Sbjct: 889 QLPAVVLQNTEQSEIYDEGLRSAGLKNLKDSLFERLYRTLQTSSEDLFPDSASVSAPNHR 948 Query: 91 SVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSF 150 S L Q RMHPE+ + FYEG L D F P Sbjct: 949 SFDMLCKQGRMHPEVALFANQAFYEGRLLPVGLPHQMEDNQDVQRMVFLP---------- 998 Query: 151 VDNSGVEEEEPEGYSYQNPGEAEFVVEI----VEYLLRSGVPPEDIGVITPYNGQVELIR 206 E E + N EA V I + + +G+ITPY Q+ LIR Sbjct: 999 -----SEPEPQGTSAKVNHSEARIVARIAADVYQQYGGTFDGMRTLGIITPYRSQIALIR 1053 Query: 207 NILNSRC--SLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRD---------ERR 255 + L + V TV+ FQG E+D+II S N ++ FL + +R+ Sbjct: 1054 KEIVKMGIPELNSILVDTVERFQGSERDVIIYSF-CVNYPYQLRFLSNLTEENGVFIDRK 1112 Query: 256 LNV 258 LNV Sbjct: 1113 LNV 1115 >tr:Q64QC1_BACFR Putative DNA helicase. Bacteroides fragilis. Length = 1957 Score = 133 bits (335), Expect = 3e-31 Identities = 69/282 (24%), Positives = 105/282 (37%), Gaps = 46/282 (16%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 ++ S + + + KFD+V+ DEA+Q E + + ++VGD KQ+ Sbjct: 1306 RMCPCMLMSPMSVAQYINVNHDKFDLVVFDEASQMPTCEAVGAIARGN-HVVVVGDPKQM 1364 Query: 63 PPTIKSKKAAAKAG--LEESLFERLVELGV---SVVRLNVQYRMHPEICRLPSNLFYEGN 117 PPT + E L L + L YR E SN Y N Sbjct: 1365 PPTNFFTSNSVDEEHIEIEDLESILDDCLALSMPSKYLLWHYRSKHESLIAFSNSQYYDN 1424 Query: 118 GLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVV- 176 L+ S V +E +G S QN EA+ VV Sbjct: 1425 KLLTFPSPDDLAAK-------------------VTLVPIEGYYDKGKSRQNQAEAQAVVD 1465 Query: 177 EIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNS----RCSL--------KPVEVSTVD 224 EIV L + + IGV+T + Q LI ++L+ L +PV + ++ Sbjct: 1466 EIVRRLSDPELRNQSIGVVTFSSVQQTLIEDMLSDVVLQNAELENLAFNREEPVFIKNLE 1525 Query: 225 SFQGREKDIIILSLVRSN--------RNGEIGFLRDERRLNV 258 + QG E+D+I+ S+ G + ERRLNV Sbjct: 1526 NVQGDERDVILFSVGYGPDVNGRVSLNFGPLNRDGGERRLNV 1567 >tr:Q5JXR6_HUMAN KIAA1404 protein. Homo sapiens (Human). Length = 1270 Score = 133 bits (335), Expect = 3e-31 Identities = 56/132 (42%), Positives = 78/132 (59%), Gaps = 4/132 (3%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 +A+VV MT TGAA R+ L +K + +VI++EAA+ LEA + L A + IL+GDH+ Sbjct: 977 DAQVVGMTTTGAAKYRQIL--QKVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQ 1034 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 QL P+ A LE SLFERLV++ + VRLN Q+RM PEI RL + Y L Sbjct: 1035 QLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIY--QDLE 1092 Query: 121 DISSVARRLEYD 132 + SV + + Sbjct: 1093 NHPSVLKYEKIK 1104 >tr:Q7RAT3_PLAYO Hypothetical protein. Plasmodium yoelii yoelii. Length = 583 Score = 132 bits (333), Expect = 4e-31 Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 9/148 (6%) Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 +S + + + V + E S N GEA F+ +++ Sbjct: 381 QIENSDKYNVIDKDSEEDKLCKLNDEELNNIVKINVDEIINLNNKSRGNIGEAYFIYKLI 440 Query: 180 EYLLR-SGVPPEDIGVITPYNGQVELIRNILNSRC--------SLKPVEVSTVDSFQGRE 230 E++++ + DI +ITPY+ Q+ +++NI K +E+STVDSFQGRE Sbjct: 441 EFMIQIDNICGNDICIITPYSKQMNILKNIFYDNFFNNKNYINEYKKIEISTVDSFQGRE 500 Query: 231 KDIIILSLVRSNRNGEIGFLRDERRLNV 258 K+I+I SLV SN IGFL+D RRLNV Sbjct: 501 KEIVIFSLVCSNYFKNIGFLKDYRRLNV 528 Score = 121 bits (303), Expect = 1e-27 Identities = 47/143 (32%), Positives = 60/143 (41%), Gaps = 9/143 (6%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 + + K + + F FDVV IDE Q E C IP+ LAKK L GDHK Sbjct: 100 NVVFSTCSSSSNYELNKFVKMSNFLFDVVCIDECCQCTEPLCYIPISLAKKNVFLFGDHK 159 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLV--ELGVSVVRLNVQYRMHPEICRLPSNLFYEGN- 117 QL P IK K L ++FERLV LN+QYRM+ I +N+FYE Sbjct: 160 QLSPLIKYNKN--HNKLNITMFERLVNKYKENISFLLNIQYRMNHNILIWSNNIFYENKL 217 Query: 118 ----GLVDISSVARRLEYDSANP 136 +I + Sbjct: 218 NSHESCKNIKVDGIIGNKNKQLK 240 >tr:O25195_HELPY Hypothetical protein HP0447. Helicobacter pylori (Campylobacter pylori). Length = 360 Score = 131 bits (331), Expect = 8e-31 Identities = 76/259 (29%), Positives = 119/259 (45%), Gaps = 34/259 (13%) Query: 25 KFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTI----------KSKKAAAK 74 FD VI+DEAA+A E L+ + LAK++ ILVGD +QLP + +S+ A + Sbjct: 67 YFDSVIVDEAAKANPLELLMVMALAKERIILVGDDRQLPHYLDDEIGKKLEDESQDAQDE 126 Query: 75 AG--LEESLFERLVELGVS---------VVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS 123 L++S+F++L E + LN+QY MHP + L S++FY+ + Sbjct: 127 IEKALKDSMFKKLKERAQKLKELDGKECFITLNMQYGMHPLLGELVSDVFYKP-----HN 181 Query: 124 SVARRLEYDSANPGFFPTPQFIV----PLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 V PL+++D +E+ SY E + E + Sbjct: 182 ESFESPLKGKHLEEKPFKHNLRVLDNKPLAWIDVKESKEKRNADGSYYRESEITAIKECL 241 Query: 180 EYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLV 239 + ++ P GVIT ++ Q L+ L +E+ TVDSFQG+E D++ LS V Sbjct: 242 DLFMKDE-PDFTFGVITFFSEQKRLLEQALKG---YANLEIGTVDSFQGKEFDVVFLSSV 297 Query: 240 RSNRNGEIGFLRDERRLNV 258 R+ GFL+ L V Sbjct: 298 RTRHTEGFGFLKISSCLCV 316 >tr:Q7W753_BORPA Hypothetical protein. Bordetella parapertussis. Length = 1139 Score = 129 bits (326), Expect = 3e-30 Identities = 75/263 (28%), Positives = 105/263 (39%), Gaps = 32/263 (12%) Query: 11 GAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP-PTIKSK 69 G A E+ FD + +DEA Q A L+ + + +L+GD QL P+ + Sbjct: 846 GTAWLFARPEFEQA-FDYLFVDEAGQVSLAN-LVAMGQCARNIVLLGDQMQLGQPSQGTH 903 Query: 70 KAAAKAGLEESLFERLVELGVSV-VRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARR 128 + E L + + S V L+ YRMHPEIC S Y+G ++ A R Sbjct: 904 PGRSGESALEYLLDGQATIAASQGVFLDTSYRMHPEICGFISEAIYDGRLRAAPATAAHR 963 Query: 129 LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVP 188 L D A P D G + + EA V E+ LLR Sbjct: 964 LLLDEAAGRELPAHGIRYVPVPHD----------GNTQSSREEAARVAELCALLLRQRYV 1013 Query: 189 PE----------DIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSL 238 E DI + PYN QV +R L V TVD FQG+E ++I+S+ Sbjct: 1014 GEAGAPAPLRLDDILFVAPYNVQVNTLRAALPD-----GARVGTVDKFQGQEAQVVIVSM 1068 Query: 239 VRSNR---NGEIGFLRDERRLNV 258 S+ ++ FL RLNV Sbjct: 1069 ATSSGDYLPRDLEFLFSRNRLNV 1091 >tr:Q7WIM2_BORBR Hypothetical protein. Bordetella bronchiseptica (Alcaligenes bronchisepticus). Length = 1139 Score = 129 bits (325), Expect = 4e-30 Identities = 75/263 (28%), Positives = 105/263 (39%), Gaps = 32/263 (12%) Query: 11 GAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP-PTIKSK 69 G A E+ FD + +DEA Q A L+ + + +L+GD QL P+ + Sbjct: 846 GTAWLFARPEFEQA-FDYLFVDEAGQVSLAN-LVAMGQCARNIVLLGDQMQLGQPSQGTH 903 Query: 70 KAAAKAGLEESLFERLVELGVSV-VRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARR 128 + E L + + S V L+ YRMHPEIC S Y+G ++ A R Sbjct: 904 PGRSGESALEYLLDGQATIAASQGVFLDTSYRMHPEICGFISEAIYDGRLRAAPATAAHR 963 Query: 129 LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVP 188 L D A P D G + + EA V E+ LLR Sbjct: 964 LLLDEAAGRELPAHGIRYVPVPHD----------GNTQSSREEAARVAELCALLLRQRHV 1013 Query: 189 PE----------DIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSL 238 E DI + PYN QV +R L V TVD FQG+E ++I+S+ Sbjct: 1014 DEAGAPAPLTLDDILFVAPYNVQVNTLRAALPD-----GARVGTVDKFQGQEAQVVIVSM 1068 Query: 239 VRSNR---NGEIGFLRDERRLNV 258 S+ ++ FL RLNV Sbjct: 1069 ATSSGDYLPRDLEFLFSRNRLNV 1091 >tr:Q7XUD7_ORYSA OSJNBa0088A01.8 protein. Oryza sativa (japonica cultivar-group). Length = 893 Score = 128 bits (323), Expect = 7e-30 Identities = 68/206 (33%), Positives = 92/206 (44%), Gaps = 39/206 (18%) Query: 7 MTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL-AKKKFILVGDHKQLPPT 65 ++ +G K +++I+DEAAQ E E LIPL L + +L+GD QLP Sbjct: 646 VSPSGICGPFKQPEKANL-LEMLIVDEAAQLKECETLIPLQLPGITQAVLIGDEYQLPAL 704 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSV 125 +KS K A A S+FERL LG S LNVQYRMHPEI R P FY+G Sbjct: 705 VKS-KIADNAFFGRSVFERLSLLGYSKHLLNVQYRMHPEISRFPVATFYDGK-------- 755 Query: 126 ARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRS 185 + + E G S +N E V+ IV+ L + Sbjct: 756 -------------------------ISDGSNVTTEKNGRSLKNTIEVATVLRIVQRLFKE 790 Query: 186 GVPPE---DIGVITPYNGQVELIRNI 208 V + +GV++PYN QV I+ Sbjct: 791 AVSTQSKLSVGVVSPYNAQVRAIQEK 816 >tr:Q7VYJ1_BORPE Hypothetical protein. Bordetella pertussis. Length = 1139 Score = 128 bits (322), Expect = 1e-29 Identities = 74/263 (28%), Positives = 105/263 (39%), Gaps = 32/263 (12%) Query: 11 GAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP-PTIKSK 69 G A E+ FD + +DEA Q A L+ + + +L+GD QL P+ + Sbjct: 846 GTAWLFARPEFEQA-FDYLFVDEAGQVSLAN-LVAMGQCARNIVLLGDQMQLGQPSQGTH 903 Query: 70 KAAAKAGLEESLFERLVELGVSV-VRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARR 128 + + L + + S V L+ YRMHPEIC S Y+G ++ A R Sbjct: 904 PGRSGESALDYLLDGQATIAASQGVFLDTSYRMHPEICGFISEAIYDGRLRAAPATAAHR 963 Query: 129 LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVP 188 L D A P D G + + EA V E+ LLR Sbjct: 964 LLLDEAAGRELPAHGIRYVPVPHD----------GNTQSSREEAARVAELCALLLRQRHV 1013 Query: 189 PE----------DIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSL 238 E DI + PYN QV +R L V TVD FQG+E ++I+S+ Sbjct: 1014 DEAGAPAPLTLDDILFVAPYNVQVNTLRAALPD-----GARVGTVDKFQGQEAQVVIVSM 1068 Query: 239 VRSNR---NGEIGFLRDERRLNV 258 S+ ++ FL RLNV Sbjct: 1069 ATSSGDYLPRDLEFLFSRNRLNV 1091 >tr:Q7VHE2_HELHP Hypothetical protein. Helicobacter hepaticus. Length = 836 Score = 126 bits (318), Expect = 3e-29 Identities = 74/268 (27%), Positives = 110/268 (41%), Gaps = 46/268 (17%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 + + S + SL L+ FD VII+EA+Q + L A K I+VGD KQLP Sbjct: 406 PVILSTTHSIKSSLNLKDTLFDYVIIEEASQVDLVTGFLALSSA-KNAIIVGDTKQLPNV 464 Query: 66 IKSKKAA-------------AKAGLEESLFERLV--ELGVSVVRLNVQYRMHPEICRLPS 110 I K LE+SL ++ V V L YR HP+I + Sbjct: 465 IAQDKKPLIETLTRKYCIPLHYDFLEQSLLSSVIATLPNVPKVMLKEHYRCHPKIIGFCN 524 Query: 111 NLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG 170 FY L S + G V +FV G N Sbjct: 525 KRFYNN-----------ELIILSEDKGEN-----DVIQTFVTQKGNHARGH-----YNQR 563 Query: 171 EAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGRE 230 E + +V+ V L++ + E IG+I+P+ Q +++ ++ +E+ T+ +QGRE Sbjct: 564 EIDVIVKEVLPPLQANLTKEQIGIISPFRKQKAHLQHNVS------GIEIDTIHKYQGRE 617 Query: 231 KDIIILSLVRSNRNGEIGFLRDERRLNV 258 K+ IILS V N F+ + LNV Sbjct: 618 KEAIILSTV---ENEISDFIDNPNLLNV 642 >tr:Q5P0E9_AZOSE Hypothetical protein. Azoarcus sp. (strain EbN1). Length = 1604 Score = 126 bits (317), Expect = 3e-29 Identities = 63/282 (22%), Positives = 94/282 (33%), Gaps = 48/282 (17%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 + S L K +FDVVI DEA+Q + LL ++ I+VGD +Q+PPT Sbjct: 968 PVFMMSPMSIASFLPPGKVEFDVVIFDEASQVKAVDAFGALLRG-RQAIVVGDTRQMPPT 1026 Query: 66 IKSKKAAAKAGLE------ESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 + + ES+ G L+ YR E SN+ + L Sbjct: 1027 DFFGRDVEVDEEDNVTADIESVLSLFRARGAQERYLSWHYRSRHESLIAVSNVEFYERRL 1086 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 S P G + N EA V + V Sbjct: 1087 TIFPSSGTNALA--TGLEMVCLP--------------HALYDRGRTRTNREEARAVAQAV 1130 Query: 180 EYLLRSGVPPE-DIGVITPYNGQVELIRNILN---------SRCS-----LKPVEVSTVD 224 + + P +GV+ Q +LI+ L R +P V ++ Sbjct: 1131 --MDHATTHPGLSLGVVAFSVAQRDLIQVELELLRRKSPGPERFFTEAHPTEPFFVKNLE 1188 Query: 225 SFQGREKDIIILSLVRSNR--------NGEIGFLRDERRLNV 258 + QG E+D I +S+ G + ERRLNV Sbjct: 1189 NVQGDERDRIFISIGYGRNESGRIAKEFGPLNREGGERRLNV 1230 >tr:O26587_METTH DNA helicase related protein. Methanobacterium thermoautotrophicum. Length = 1157 Score = 123 bits (309), Expect = 3e-28 Identities = 71/290 (24%), Positives = 105/290 (36%), Gaps = 52/290 (17%) Query: 2 AKVVAMTCTGAASKRKSLAL--EKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDH 59 ++ S + L + +FDVVI DEA+Q + L L A+ ++ GD Sbjct: 720 KRIKPCFMMSPLSIAQYLDPRSSQLQFDVVIFDEASQVKPEDALGAFLRARTAVVM-GDT 778 Query: 60 KQLPPTIK----------SKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLP 109 QLPPT S+ A A +E L L + V L YR E Sbjct: 779 NQLPPTSFFDQMISAEEDSEDVATAADIESIL--HLCKRSFPVRMLRWHYRSRHESLIAV 836 Query: 110 SNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNP 169 SN + N L+ S AR E + + P + G + NP Sbjct: 837 SNQEFYDNRLLVYPSPAREDEELGLHLVYLPDTVYE----------------RGRTSSNP 880 Query: 170 GEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQV----ELIRNILNSRCSL---------K 216 EA VV+ +E +GV T Q+ E + L L + Sbjct: 881 LEAAAVVDAIEEHFMRYGSSRSLGVGTFSVAQMNAILEALEARLRENPELERIINQETDE 940 Query: 217 PVEVSTVDSFQGREKDIIILSLVR--------SNRNGEIGFLRDERRLNV 258 P + +++ QG E+D+I +S+ S G + ERRLNV Sbjct: 941 PFFIKNLETIQGDERDVIFISVGYGFDERGRMSLNFGPLNQEGGERRLNV 990 >tr:Q9NSW3_HUMAN Hypothetical protein DKFZp434C0927. Homo sapiens (Human). Length = 239 Score = 123 bits (309), Expect = 3e-28 Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 19/174 (10%) Query: 89 GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPL 148 G + L QYR HP I + ++LFY+G L++ + R P Sbjct: 2 GHKPILLRTQYRCHPAISAIANDLFYKG-ALMNGVTEIERSPLLEWL-----------PT 49 Query: 149 SFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQV----EL 204 N E+ S+ N EA F +++++ L+ SG+ IGVIT Y Q+ L Sbjct: 50 LCFYNVKGLEQIERDNSFHNVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHL 109 Query: 205 IRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 + + +K V+VSTVD+FQG EK+IIILS VR+ + +GF+ E+R+NV Sbjct: 110 LSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTRQ---VGFIDSEKRMNV 160 >tr:Q887E7_PSESM Hypothetical protein. Pseudomonas syringae (pv. tomato). Length = 1822 Score = 123 bits (308), Expect = 4e-28 Identities = 67/300 (22%), Positives = 99/300 (33%), Gaps = 49/300 (16%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 + S +L L FDVVI DEA+Q E + L A ++ I+VGD QLPPT Sbjct: 1250 PVWLMSPLSVSDTLPLTPDLFDVVIFDEASQIPSEEAVPALSRA-QQVIVVGDEMQLPPT 1308 Query: 66 IKSKKAAAK---------------AGLEESLFERLVELGVSVVRLNVQYRMHPE-ICRLP 109 A + L+ + L YR E + Sbjct: 1309 NFFSSAGDQQDNELIAMEDGEQIAINLDADSLLSQAARNLPATLLAWHYRSRHEALISFS 1368 Query: 110 SNLFYEGNGLVDISSVARRLEYDSANPGFFPT---PQFIVPLSFVDNSGVEEEEPEGYSY 166 + FYEG + S Q L S ++ E+ S Sbjct: 1369 NAAFYEGRLITIPDRRIEHPVPVSTPLDSSEDQAVIQGADTLLDSPISFLKIEDGVYISR 1428 Query: 167 QNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNS--------------- 211 N EA ++ +V LLR +G++ Q I L + Sbjct: 1429 GNVAEARYIAGLVRELLRRE-TGLSLGIVAFSEAQQGEIEQALENLAASDADFATRLERE 1487 Query: 212 -----RCSLKPVEVSTVDSFQGREKDIIILSLVRSN--------RNGEIGFLRDERRLNV 258 + V +++ QG E+D+IILS+ + G I E+RLNV Sbjct: 1488 YVREDAGQFNGLFVKNLENVQGDERDVIILSICYAPGPNGKMLMNFGPINQRGGEKRLNV 1547 >tr:Q95ZZ3_CAEEL Hypothetical protein C05C10.2b. Caenorhabditis elegans. Length = 1553 Score = 122 bits (307), Expect = 5e-28 Identities = 84/255 (32%), Positives = 110/255 (43%), Gaps = 18/255 (7%) Query: 10 TGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKK-FILVGDHKQLPPTI-- 66 A K L V IDEA+Q E L L F L+GD QLPP Sbjct: 1187 MVTADSAKGLLNILRDVCAVQIDEASQLAECTLLGLLKSFNNASFGLIGDIHQLPPYCEE 1246 Query: 67 KSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVA 126 + G+ ++ + E V L YR HP+ L S LFY+G LV S Sbjct: 1247 GLEGKLKDFGIGNTMERAIKEKMFPVCTLRNVYRCHPKTTELLSELFYDG-ALVSGVSEL 1305 Query: 127 RRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLL--- 183 R ++ + F P P+ FV+N+G G S N E V EIV+ L+ Sbjct: 1306 ARSDFMTKRDDF--WPNPKFPMMFVNNTG--ASTKMGTSTSNSSEKSIVGEIVQNLINDP 1361 Query: 184 RSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNR 243 R+ V P DIGVI+ Y+ Q IL V+ TVD+FQG EK+III+ S Sbjct: 1362 RNPVNPSDIGVISFYSAQTS----ILTEHLRGSGVKCGTVDAFQGSEKEIIIM---CSTN 1414 Query: 244 NGEIGFLRDERRLNV 258 F++ RLNV Sbjct: 1415 ERISDFMQLSNRLNV 1429 >tr:Q8KJ29_RHILO PUTATIVE HELICASE PROTEIN ATP-BINDING. Rhizobium loti (Mesorhizobium loti). Length = 1193 Score = 121 bits (305), Expect = 8e-28 Identities = 85/318 (26%), Positives = 121/318 (38%), Gaps = 88/318 (27%) Query: 25 KFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT-------IKSKKAAAK--- 74 +FD V+I+EAA+A E + PL L+ ++ L+GDH QLPP I S A + Sbjct: 808 QFDWVLIEEAAKATGPELIAPLSLSGRRL-LIGDHHQLPPFDAERLTSILSNNTAVRNAL 866 Query: 75 --------AGLEES---------------------------LFERLVELGVSVVRLNV-- 97 A ES F LVE + Sbjct: 867 QQVEHVLGATFFESGLDELRSAVRDEAVLETTTQLALRMLEPFRSLVEEEERKRTVAGGQ 926 Query: 98 ----------QYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVP 147 Q+RM P I L S FY+ + R P F + P Sbjct: 927 RRTVSSELWCQHRMDPAIAELVSRCFYKNR---LYTGDDRIESAKLPLPFTFDSKIPSSP 983 Query: 148 LSFVDN------SGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPE-----DIGVIT 196 + F+D E E + NP E + V+EI+ L + + P + V++ Sbjct: 984 IVFIDMPFASRSGRAEPVEKGRPRWHNPSERKIVLEILRRLKVADLKPAPADLNTLAVLS 1043 Query: 197 PYNGQVELI---RNILNSRC---------SLKPVEVS-TVDSFQGREKDIIILSLVRSNR 243 PY QVE + ++L + TVDS QG E D++I+SLVR+N Sbjct: 1044 PYRAQVERMARDLDVLRDSGASSIAQFSGFTHDSRMHGTVDSSQGSEADLVIVSLVRNNH 1103 Query: 244 NGEI---GFLRDERRLNV 258 + GFLRD RR+NV Sbjct: 1104 RNGVASLGFLRDPRRMNV 1121 >tr:P73197_SYNY3 Sll1582 protein. Synechocystis sp. (strain PCC 6803). Length = 1118 Score = 121 bits (305), Expect = 9e-28 Identities = 76/282 (26%), Positives = 115/282 (40%), Gaps = 34/282 (12%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 E +V T + K L +FD +IIDEA+Q EA+ ++L KF+L+GD K Sbjct: 781 ENQVFVTTVSTFKDKYLLLREFVGEFDQLIIDEASQLTEADLAGIVVLFN-KFVLIGDQK 839 Query: 61 QLPPTI-------------KSKKAAAKAGLEESLFERLVELGVSVVR------LNVQYRM 101 QLP I + A + L SLFERL+ + L YRM Sbjct: 840 QLPAVITQNEEECRVEVEPFRRYAINISDLRISLFERLINNAKNKGWNHCYGQLTEHYRM 899 Query: 102 HPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEP 161 H +I L ++ + LV+ + R++E N + + + E Sbjct: 900 HRDIASLIAHHY--DRPLVEQTQEQRKIESSYENNDNDLLSKLSKSRTIFIETPSETSIQ 957 Query: 162 EGYSYQNPGEAEFVVEIVEYLLRSGVPP-EDIGVITPYNGQVELIRNILNS-----RCSL 215 +N EA IV+ + + P +IG+I P+ QV I L S Sbjct: 958 R----KNTNEAIIAATIVKTYWENKLLPMAEIGIIAPFRAQVAEINQQLEKIFAGADFSR 1013 Query: 216 KPVEVSTVDSFQGREKDIIILSLV--RSNRNGEIGFLRDERR 255 + V TV+ FQG E+++II S S + I + D R Sbjct: 1014 DSIVVDTVERFQGDERELIIFSTTISWSKQVKNIQSIADGDR 1055 >tr:Q626F5_CAEBR Hypothetical protein CBG01003 (Fragment). Caenorhabditis briggsae. Length = 1239 Score = 121 bits (304), Expect = 1e-27 Identities = 74/255 (29%), Positives = 111/255 (43%), Gaps = 18/255 (7%) Query: 10 TGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK-KFILVGDHKQLPPTIKS 68 + K K + V IDEA+Q E L L K F L+GD QLPP Sbjct: 960 SVCTLLDKKYETNKNECTTVQIDEASQLPEYTLLGLLKTYNKANFGLIGDIHQLPPFCME 1019 Query: 69 K--KAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVA 126 + + G+ ++ + + L YR HP+ L S LFY+G L+ + + Sbjct: 1020 ELEGRLKEFGIGNTMERAIQNKLFPISNLRYVYRCHPQTTALLSELFYDGK-LISGVTES 1078 Query: 127 RRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRS- 185 +R E+ F P P+ + + + + G S QN E + V +V+ LL Sbjct: 1079 QRNEFMIKRKDF--WPNPSYPVMII--NHMGTCQRMGTSAQNHSEKDLVSYMVQNLLDQR 1134 Query: 186 --GVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNR 243 + P+DIGVI+ Y Q L+ L V+ TVD+FQG EK++IIL Sbjct: 1135 KYTLKPQDIGVISFYAAQTSLLTEQLRRSG----VKCGTVDAFQGSEKEVIILCCT---N 1187 Query: 244 NGEIGFLRDERRLNV 258 F++ + RLNV Sbjct: 1188 EHATEFMQCKFRLNV 1202 >tr:Q6L2P1_PICTO DNA helicase. Picrophilus torridus. Length = 1275 Score = 121 bits (304), Expect = 1e-27 Identities = 63/279 (22%), Positives = 109/279 (39%), Gaps = 47/279 (16%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 + + + + KFD+VI DEA+Q AE + ++ ++ I+ GD KQLPPT Sbjct: 857 PCFMMSPLTVSEYID-PEIKFDLVIFDEASQIRTAEAIGSIIRG-RQVIISGDDKQLPPT 914 Query: 66 IKSKK-----AAAKAGLEESLFERLVELGVSVVRLNVQYRMHPE-ICRLPSNLFYEGNGL 119 + + E++ ++ + ++ ++L YR + + + + FY+ Sbjct: 915 TFFQGIDEEPNDENYTILENILDQYDSMSLNRIQLRWHYRSYDDKLIAFSNKHFYDNTLE 974 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 SS S V + V G N EAE + IV Sbjct: 975 TFPSSYI------------------NPDDSGVFFNYVGGSYDRGKKRINDIEAEKIANIV 1016 Query: 180 EYLLRSGVPPE--DIGVITPYNGQVELIR----------NILNSRCSLKPVEVSTVDSFQ 227 + + + V P+ IG++T Q +LI I+ + + V +++ Q Sbjct: 1017 KEEI-NYVKPDHISIGIVTLNESQRQLITSKIEDISKDDEIIKDALNRDAIFVKNLENVQ 1075 Query: 228 GREKDIIILSLVRSN--------RNGEIGFLRDERRLNV 258 G E D+II+SL G I E+RLNV Sbjct: 1076 GDESDVIIISLGYGKDKNGKMTMNFGPINAAGGEKRLNV 1114 >tr:Q8PTW8_METMA Hypothetical protein MM2592. Methanosarcina mazei (Methanosarcina frisia). Length = 1898 Score = 121 bits (304), Expect = 1e-27 Identities = 70/290 (24%), Positives = 101/290 (34%), Gaps = 54/290 (18%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 K+ S + L +FDV+I DEA+Q + + LL K+ I+ GD KQ Sbjct: 938 QKIKPCFLMSPLSIAQYLDPRSTRFDVIIFDEASQVRPEDAVGALLRGKQAVIM-GDSKQ 996 Query: 62 LPPTIKS-----------KKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPS 110 LPPT + +E L + + V L YR E S Sbjct: 997 LPPTDFFDTVVDSHENDPEDYTPAGDMESVL--NVCKRSFPVKTLRWHYRSRHESLIAIS 1054 Query: 111 NLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG 170 N + N L S ++ E P + G S N Sbjct: 1055 NQEFYDNRLYVYPSPMQKDESLGLKFVHLPDAAYD----------------RGRSGANRI 1098 Query: 171 EAEFVVEIV-EYLLRSGVPPEDIGVITPYNGQVELIRNILNS-------------RCSLK 216 EA V V E+ P + +GV T Q E I + + + Sbjct: 1099 EARAVARAVFEHF--QKYPGKSLGVGTFNIKQQEAILEEIEALQKANPGVDLNSGNDRGE 1156 Query: 217 PVEVSTVDSFQGREKDIIILSLVR---SNR-----NGEIGFLRDERRLNV 258 V +++ QG E+D+I+LS+ SNR G + ERRLNV Sbjct: 1157 HFFVKNLETIQGDERDVILLSIGYGFDSNRKLSLNFGPLNREGGERRLNV 1206 >tr:Q8K2R9_MOUSE 4930422G04Rik protein. Mus musculus (Mouse). Length = 237 Score = 120 bits (301), Expect = 3e-27 Identities = 64/174 (36%), Positives = 94/174 (54%), Gaps = 19/174 (10%) Query: 89 GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPL 148 G V L QYR HP I + ++LFYEG+ + IS R + Sbjct: 2 GHKPVLLRTQYRCHPAISAIANDLFYEGSLVNGISERERGPVLE--WLPTLC-------- 51 Query: 149 SFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNI 208 F + +G E+ E E S+ N EA F +++++ L+ SG+ IGVIT Y Q+ I N+ Sbjct: 52 -FYNVTGAEQVEREN-SFVNVAEATFTLKLIQSLMASGIESCMIGVITLYKSQMYKICNL 109 Query: 209 LNSRCSLKP----VEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 L++ P V+VSTVD+FQG EK+I ILS VR+ + +GF+ E+R+NV Sbjct: 110 LSAVDVGHPDVKAVQVSTVDAFQGAEKEITILSCVRTRQ---VGFIDSEKRMNV 160 >tr:Q5L036_GEOKA Hypothetical protein GK1415. Geobacillus kaustophilus. Length = 1255 Score = 119 bits (300), Expect = 3e-27 Identities = 73/266 (27%), Positives = 107/266 (40%), Gaps = 39/266 (14%) Query: 25 KFDVVIIDEAAQALEAECLIPLLLAKK--KFILVGDHKQLPPTIKSKKAAAKAG--LEES 80 +FDVVI+DEA+Q A+ L+ KK + ++VGDH QLPP I+ AAA+ L +S Sbjct: 919 EFDVVILDEASQIRVADSLLAQRHVKKAGRLLIVGDHFQLPPIIQGAYAAAEGEPHLFDS 978 Query: 81 LFERLVELGVSVVR---LNVQYRMHPEICRLPSNLFYEG-----NGLVDISSVARRLEYD 132 +F L + V L +RM+ +CR P++ Y N + ++A Sbjct: 979 IFRLLFDADVEKRYTRQLTDNFRMNEALCRYPADRIYGRDYTAFNRQIAEQTLALVDAPT 1038 Query: 133 SANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRS------- 185 + + V + +E N EA +V I L Sbjct: 1039 ADEWVEAAIDPDYPLVVCVYDGAHGTQE-------NEAEARWVANITRVLRERLLDGDGK 1091 Query: 186 ---GVPPEDIG-------VITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIII 235 P D +I+P+ Q+ IR L + P V TVD QG+E D I Sbjct: 1092 RYDDTPDGDQAFWRHGLFIISPHRAQIRAIRRELERQELRPPFFVDTVDKMQGQEADAAI 1151 Query: 236 LSL-VRSNRNG--EIGFLRDERRLNV 258 +S V E F+ RLNV Sbjct: 1152 ISYGVADPELAVMEGEFIYSLNRLNV 1177 >tr:Q8TKB8_METAC Hypothetical protein MA3490. Methanosarcina acetivorans. Length = 1939 Score = 119 bits (300), Expect = 4e-27 Identities = 66/290 (22%), Positives = 103/290 (35%), Gaps = 54/290 (18%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 K+ S + L +FDV+I DEA+Q + + LL K+ +++GD KQ Sbjct: 948 QKIKPCFLMSPLSIAQYLDPRSTRFDVIIFDEASQVRPEDAVGALLRG-KQVVVMGDSKQ 1006 Query: 62 LPPTIKS-----------KKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPS 110 LPPT + +E L + + V L YR E S Sbjct: 1007 LPPTDFFDTVVDSPESEPDDYTSAGDMESIL--NVCKRSFPVKTLRWHYRSRHESLIAIS 1064 Query: 111 NLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG 170 N + N L S ++ E + + D + G S N Sbjct: 1065 NQEFYDNRLYVYPSPMQKDESL-----------GLKFVYLPDAAYD-----RGKSGVNRI 1108 Query: 171 EAEFV-VEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNS-------------RCSLK 216 EA V + E+ P + +GV T Q E I + + + + Sbjct: 1109 EARAVSRAVFEHF--QKYPGKSLGVGTFNIKQQEAILDEIEALQKANPGVDLNSGNDRGE 1166 Query: 217 PVEVSTVDSFQGREKDIIILSLVR--------SNRNGEIGFLRDERRLNV 258 V +++ QG E+D+I+LS+ S G + ERRLNV Sbjct: 1167 HFFVKNLETIQGDERDVILLSVGFGFDNNGRLSLNFGPLNREGGERRLNV 1216 >tr:Q5NQM9_ZYMMO DNA and RNA helicase. Zymomonas mobilis. Length = 1733 Score = 119 bits (299), Expect = 4e-27 Identities = 66/289 (22%), Positives = 102/289 (35%), Gaps = 59/289 (20%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 S + L + FD+VI DEA+Q + + + K+ I+ GD +Q+PPT Sbjct: 1291 PCMLMSPLSVAQFLPPDHALFDLVIFDEASQIAPWDAIGAMARG-KQVIVAGDPRQMPPT 1349 Query: 66 IKSKKAAAKAGL----EESLFERLVEL---GVSVVRLNVQYRMHPEICRLPSNLFYEGNG 118 ++ L E + L E G+ + LN YR E SN Y Sbjct: 1350 SFFNRSVQNDDLVADTERDMESILDECLSAGIPMHSLNFHYRSRHESLIAFSNHSYYDGS 1409 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA-----E 173 L+ FP P + V V G + N EA E Sbjct: 1410 LI-----------------TFPAPVRKE--TAVHWRRVNGVYSRGRNRVNAIEAQAMVDE 1450 Query: 174 FVVEIVE-YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK-------------PVE 219 V + + R G +G+IT + Q L+ ++L+ PV Sbjct: 1451 AVARLTDPEFNRQGW---SLGIITLNSDQQRLVEDLLDKARRDHPEIESHFSDLLPEPVT 1507 Query: 220 VSTVDSFQGREKDIIIL----------SLVRSNRNGEIGFLRDERRLNV 258 V +++ QG E+D++I+ S G + RRLNV Sbjct: 1508 VRNLETVQGIERDLVIIGIGFGPTEPGSPTMLMSFGPLSAEGGWRRLNV 1556 >tr:Q9V2G5_PYRAB DNA replication helicase, dna2 homolog. Pyrococcus abyssi. Length = 1308 Score = 117 bits (293), Expect = 2e-26 Identities = 84/282 (29%), Positives = 114/282 (40%), Gaps = 66/282 (23%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ--------------------L 62 ++ D+V+IDEA+ L+ AK + +LVGDH+Q L Sbjct: 980 NYEADLVVIDEASMMDLPMFLLATKNAKGQVLLVGDHRQMQPIQVHEWELEDRKTIEEHL 1039 Query: 63 PPTIKSKKAAAKAG-LEESLFERLVEL--------------GVSVVRLNVQYRMHPEICR 107 P G LEE +R + + + RL +R+ + Sbjct: 1040 PFLSALNFIRFLRGELEERELKRFKRILGRNPPKWKVDKEDVLPMHRLRETFRLPQALAE 1099 Query: 108 LPSNLFYEGNGLVDISSVARRLEYDSAN--------PGFFPTPQFIVPLSFVDNSGVEEE 159 L S LFY +G+ S E A F P + V L D Sbjct: 1100 LHSELFYSFDGIKLRSRKEPSEEIARALRNAGKNEFLRFILDPDYPVVLIVHDE------ 1153 Query: 160 EPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVE 219 G S N EA V EIVE L +GV D+GV+ PY Q LIR SL V+ Sbjct: 1154 --NGSSKVNELEAGIVKEIVEAL--NGV---DVGVVVPYRAQKRLIR-------SLVNVQ 1199 Query: 220 VSTVDSFQGREKDIIILSLVRS--NRNGEI-GFLRDERRLNV 258 V TV+ FQG E+DIII+S+ S + ++ FL D RLNV Sbjct: 1200 VDTVERFQGGERDIIIVSMTSSDPSYLLKVMDFLYDPNRLNV 1241 >tr:Q86IV6_DICDI Hypothetical protein. Dictyostelium discoideum (Slime mold). Length = 1838 Score = 117 bits (293), Expect = 2e-26 Identities = 67/237 (28%), Positives = 100/237 (42%), Gaps = 28/237 (11%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 ++VA +C G L K +FD IIDEA+ + + P+L K F+LVGDH Sbjct: 1430 RQQLVATSCLGINH----QCLLKMQFDYCIIDEASILSQPISMGPILKCKS-FVLVGDHH 1484 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVV-RLNVQYRMHPEICRLPSNLFYEGNGL 119 QLPP + +K+A GL+ SLF++L S V L QYRM I L ++L Y + Sbjct: 1485 QLPPIVNNKEAGKL-GLDISLFKQLSTSHPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLV 1543 Query: 120 VDISSV------------------ARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEP 161 S+ L++ + P P V D E Sbjct: 1544 CGNQSISNLSLQTNYYHNNNNTTHIDLLDHINNWPQIICNPNSSVIFVNTDQLNNSTESS 1603 Query: 162 EGYSYQNPGEAEFVVEIVEYLLRSG--VPPEDIGVITPYNGQVELIRNILNSRCSLK 216 G + N EA +V I+ L + + IG+ITP Q+ I+ + S++ Sbjct: 1604 NGDLFYNQTEA-NIVAILTNCLINKLNINQSQIGIITPIRFQLNFIKKSILKYLSIE 1659 Score = 61.8 bits (149), Expect = 1e-09 Identities = 21/42 (50%), Positives = 32/42 (76%), Gaps = 1/42 (2%) Query: 218 VEVSTVDSFQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 +++ T+D FQG++KD II+S VRSN EIG ++D +R+NV Sbjct: 1751 LDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNV 1792 >tr:Q7S356_NEUCR Hypothetical protein. Neurospora crassa. Length = 994 Score = 116 bits (290), Expect = 5e-26 Identities = 69/266 (25%), Positives = 100/266 (37%), Gaps = 52/266 (19%) Query: 29 VIIDEAAQALEAECLIPL-----------LLAKKKFILVGDHKQLPPTIKSKKAAAKAGL 77 ++IDEAAQA+E E LIPL L I+ GD +QL P + L Sbjct: 548 LLIDEAAQAMEPEALIPLHVVSPPLKGPEPLFTPLIIMAGDEQQLNPRTSCPSTLLQESL 607 Query: 78 EESLFERLVELGVSVVR-----------------------------LNVQYRMHPEICRL 108 LF+R V + R L YR HP I + Sbjct: 608 FARLFKRPVYANHPLARRLAKDAQPPKQQYQLHPDLLPILRPPFTNLIRNYRSHPAILAM 667 Query: 109 PSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS--- 165 PS LFY + + R P D+ E PE S Sbjct: 668 PSKLFYFDTLVAEADRHERNRLKSWPGWRGRRWPILYHDNPSPDDL--EAPSPESPSSTA 725 Query: 166 ----YQNPGEAEFVVEIVEYLLRSGV-PPEDIGVITPYNGQVELIRNILNSR--CSLKPV 218 + N GEA + L RSG+ +I +++P+ QV +IR+++ S + V Sbjct: 726 TTGGWFNVGEAHLACQYALSLFRSGLAKQSEICIMSPFKAQVRMIRSLIRSEQYGMMWEV 785 Query: 219 EVSTVDSFQGREKDIIILSLVRSNRN 244 V ++FQG E ++IL + RS + Sbjct: 786 NVGPTEAFQGLEHGVVILCVTRSRKR 811 >tr:O57849_PYRHO Hypothetical protein PH0109. Pyrococcus horikoshii. Length = 1188 Score = 115 bits (288), Expect = 7e-26 Identities = 73/274 (26%), Positives = 106/274 (38%), Gaps = 58/274 (21%) Query: 27 DVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ--------------------LPPTI 66 D+V+IDEA+ + AK + +LVGDH+Q LP Sbjct: 866 DLVVIDEASMLDLPMFFLATSNAKGQVLLVGDHRQMQPIQVHEWELEDRKTIEEHLPFLS 925 Query: 67 KSKKAAAKAG-LEESLFERLVE--------------LGVSVVRLNVQYRMHPEICRLPSN 111 G LEE +R + + RL +R+ + +L S Sbjct: 926 VLNFIRFLRGELEERELKRFKRILGRDPPRWNVDKDRVLPMHRLRETFRLPRALAKLHSE 985 Query: 112 LFYEGNGLVDISS----VARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQ 167 LFY +G+ IS A F + E G + Sbjct: 986 LFYSFDGIELISRKNSDREVLETLKKAGKDEFLKFILDPGYPVILIIHNE----GGSTKV 1041 Query: 168 NPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQ 227 N EAE V +I++ V D+GV+ PY Q LIR SL V+V TV+ FQ Sbjct: 1042 NELEAEIVKDILKE-----VKGIDVGVVVPYRAQKRLIR-------SLVNVQVDTVERFQ 1089 Query: 228 GREKDIIILSLVRSNR---NGEIGFLRDERRLNV 258 G EKD+II+S+ S+ + + F+ + RLNV Sbjct: 1090 GGEKDVIIVSMTSSDPAYLSKVLEFIYNPNRLNV 1123 >tr:Q7M992_WOLSU ATP-BINDING PROTEIN. Wolinella succinogenes. Length = 815 Score = 110 bits (275), Expect = 2e-24 Identities = 65/265 (24%), Positives = 102/265 (38%), Gaps = 45/265 (16%) Query: 8 TCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTI- 66 + + + FD +IIDEA+Q + L K ++VGD KQLPP I Sbjct: 371 VLLSTTHSLRECKKDDYLFDYLIIDEASQVDLVAGGLALS-CAKNAVIVGDLKQLPPVIE 429 Query: 67 --KSKKAAAK---------AGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLF 113 +KA ++SL E + + L YR HP+I + F Sbjct: 430 GQMVEKAKELLYFFSIEASYDYQKSLLESISRVFPHAPKTLLREHYRCHPKIIDFCNKKF 489 Query: 114 YEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAE 173 Y G L+ ++ P+ ++ + E N Sbjct: 490 YNG-ELIILTKNCEET----------------SPIVLIEAQSDRKTES------NKCNMH 526 Query: 174 FVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDI 233 + I ++L + + D I+P+ + R + + +EV+TV +QGREKD Sbjct: 527 QICSISKHLSDADI--SDAACISPFKAHNQQSREVF--KGDNIEIEVNTVHKYQGREKDT 582 Query: 234 IILSLVRSNRNGEIGFLRDERRLNV 258 IILS V + E F+ D R LNV Sbjct: 583 IILSTV---VDQENSFVDDPRLLNV 604 >tr:Q8IIT6_PLAF7 Hypothetical protein. Plasmodium falciparum (isolate 3D7). Length = 1024 Score = 109 bits (272), Expect = 5e-24 Identities = 48/120 (40%), Positives = 57/120 (47%), Gaps = 5/120 (4%) Query: 7 MTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTI 66 + T K + F FD V IDE Q E C IP+ L+KK L GDHKQL P I Sbjct: 529 CSSTSNYELNKFVKFSNFLFDAVCIDECCQCTEPLCYIPISLSKKNVFLFGDHKQLSPLI 588 Query: 67 KSKKAAAKAGLEESLFERLVE--LGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISS 124 K K K L +LFERL+ LN QYRM+ I + +FYE LV S Sbjct: 589 KYNKHKNK--LNITLFERLINKHKQNISFLLNTQYRMNNLILLWSNKIFYE-QKLVSHES 645 Score = 107 bits (269), Expect = 1e-23 Identities = 49/148 (33%), Positives = 69/148 (46%), Gaps = 9/148 (6%) Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 D + + D N + V + S N GEA + +I+ Sbjct: 824 KDHINNDLSEDSDDYNNNMLTKLNDEELMKMVKIDVDDILNLNNKSRSNKGEAYVIYKII 883 Query: 180 EYLLRSGVPPEDIGVI-TPYNGQVELIRNILNSR--------CSLKPVEVSTVDSFQGRE 230 E +++ + I TPY+ Q L+RNI + K +E+STVDSFQGRE Sbjct: 884 EKMIKIDNINSNNICIITPYSKQTNLLRNIFYDNIYNDQHYLSTYKNIEISTVDSFQGRE 943 Query: 231 KDIIILSLVRSNRNGEIGFLRDERRLNV 258 K+I++ SLV SN IGFL+D RRLNV Sbjct: 944 KEIVVFSLVCSNYFKNIGFLKDYRRLNV 971 >tr:Q601Y4_MYCHY Hypothetical protein. Mycoplasma hyopneumoniae. Length = 1566 Score = 108 bits (271), Expect = 8e-24 Identities = 69/280 (24%), Positives = 101/280 (36%), Gaps = 47/280 (16%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 S FD+VI DEA+Q + ++ K++I+ GD +Q+PPT Sbjct: 940 PCLMMSPLSVSSYFKNSDIVFDLVIFDEASQLKPESAIGAIIRG-KQYIIAGDKEQMPPT 998 Query: 66 IKSKKAAAKAGLEESLFER-----LVELGV-----SVVRLNVQYRMHPEICRLPSNLFYE 115 + +E L E L L V RL YR E PSN+ Sbjct: 999 SFFDSLSEYGENDEDLAEFNVSDYLSILDVSQTFLKSYRLKWHYRSKFEELIQPSNIEIY 1058 Query: 116 GNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFV 175 N L P P F + E+ + +N EAE V Sbjct: 1059 NNDL-------------------MTFPAIERPQEFQGIKFFKVEKAVYKNRRNEKEAEKV 1099 Query: 176 VEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNS---------RCSLKPVEVSTVDSF 226 +E++ + + IGV+T Q +LI ++ + + + V ++S Sbjct: 1100 LEVLAEIFQKYQNKFTIGVVTTNLEQEKLIAGKIDRFKAENPRYFQGISEGIFVKNIESV 1159 Query: 227 QGREKDIIILSL--------VRSNRNGEIGFLRDERRLNV 258 QG E+DIII SL S G I RRLNV Sbjct: 1160 QGDERDIIIFSLNFGPNPEGKISANFGAINQKNGYRRLNV 1199 >tr:Q7TT03_MOUSE BC006779 protein. Mus musculus (Mouse). Length = 230 Score = 107 bits (269), Expect = 1e-23 Identities = 54/185 (29%), Positives = 77/185 (41%), Gaps = 28/185 (15%) Query: 94 RLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDN 153 L+ QYRMH +IC PS FY G + + T + + F Sbjct: 1 MLDTQYRMHKDICSFPSVEFYGGK-------LKTWSDLRRLPSILGHTGKPSCSVIFGSV 53 Query: 154 SGVEE------EEPEGYSYQNPGEAEFVVEIVEYL-LRSGVPPEDIGVITPYNGQVELIR 206 G E+ E+ S NP E VV I++ L L V P+DI V+TPYN Q I Sbjct: 54 QGHEQKLLVSTEDGNENSRANPEEVTQVVRIIKQLTLDRTVDPKDIAVLTPYNAQAAAIS 113 Query: 207 NILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEI-------------GFLRDE 253 L R V V+++ QG E +I+S VR+ ++ GF+ D Sbjct: 114 RGLMQRGV-TGVTVTSITKSQGSEWRYVIVSTVRTCPRSDVDQRPTKSWLKKFLGFVVDP 172 Query: 254 RRLNV 258 ++NV Sbjct: 173 HQVNV 177 >tr:Q60J24_CAEBR Hypothetical protein CBG24721. Caenorhabditis briggsae. Length = 2174 Score = 107 bits (269), Expect = 1e-23 Identities = 75/263 (28%), Positives = 108/263 (41%), Gaps = 23/263 (8%) Query: 6 AMTCTGAASKRKSLALEKFKFDV--VIIDEAAQALEAECLIPLLLAKKK-FILVGDHKQL 62 A + L + + + IDEA+Q E + L + LVGD KQL Sbjct: 1773 PDIIVSTADSLQGLLSCNLRLQISSIQIDEASQLPEHTLIYILQRFPHAGYGLVGDIKQL 1832 Query: 63 PPTIK--SKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 PP + K G+ ++ + EL L YR HP L S++FY+G L+ Sbjct: 1833 PPHCEKELKGLLKDYGIGNTMQRAINELMFLQSNLLYVYRCHPVTTELLSDMFYDG-SLI 1891 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 S R E+ P P P+ ++ G G S N E +V+ IV Sbjct: 1892 PGVSEFDRNEFMRMRPD--IWPNVRFPILVLNQKGEG--YKVGTSVANEVEKNYVLRIVS 1947 Query: 181 YLLRS----GVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIIL 236 L R + DIGVI+ Y Q L L V+ T+D+FQG EK++II+ Sbjct: 1948 MLTREVNGYRLKESDIGVISFYRAQTSL----LTEAFRSTDVKCGTIDAFQGSEKEVIIV 2003 Query: 237 SLVRSNRNGEIG-FLRDERRLNV 258 N +I F++ RLNV Sbjct: 2004 CCT----NKKISPFMQLGNRLNV 2022 >tr:Q60J45_CAEBR Hypothetical protein CBG24691. Caenorhabditis briggsae. Length = 1453 Score = 107 bits (269), Expect = 1e-23 Identities = 59/231 (25%), Positives = 90/231 (38%), Gaps = 13/231 (5%) Query: 31 IDEAAQALEAECLIPLLL-AKKKFILVGDHKQLPPTIKSK--KAAAKAGLEESLFERLVE 87 +DEA+Q L+ + + LVGD QLPP S K A + L E + Sbjct: 1186 VDEASQLPLYALAALALMFQRARLALVGDIHQLPPFEDSDLPKDIAAFAISRVLQEAIKR 1245 Query: 88 LGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVP 147 + ++ L V R P++ R+ + LFY L + S + E F +F Sbjct: 1246 RTLPIIDLTVGRRCPPQVTRMYNELFY-NQRLTSLWSPEKEAE----LRAFTAALKFGND 1300 Query: 148 LSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRN 207 G S N EA+ V I + V DIG++ Y Q + Sbjct: 1301 FPIQILDLQSSHTQSGTSLTNIEEAKAAVRIARTIQTR-VGTNDIGILCFYKAQAGEVAA 1359 Query: 208 ILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 +L V T+D QG E +I+ R++ + F+ D RR+NV Sbjct: 1360 LLGDAPFY----VGTIDGSQGHEFQAVIILTTRTSSFRDSEFIEDCRRINV 1406 >tr:Q18633_CAEEL Hypothetical protein C44H9.4. Caenorhabditis elegans. Length = 1099 Score = 107 bits (268), Expect = 2e-23 Identities = 66/262 (25%), Positives = 108/262 (41%), Gaps = 22/262 (8%) Query: 5 VAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL--AKKKFILVGDHKQL 62 + ++ + + + DEA+Q E LI LL F LVGD QL Sbjct: 727 IIVSTADSIHNLLENNVL-RDVSNIQFDEASQVPE-HTLISLLHKFPNASFGLVGDINQL 784 Query: 63 PPT--IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 P + G+ +++ + L + YR HP ++ S+LFY G L+ Sbjct: 785 PAYCDDDLQGLLKDYGIGKTMARASRDKMFPQSILRLVYRCHPTTTKILSDLFYNGQ-LI 843 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 +R E+ P +P F + + + G G S N E + VV IV Sbjct: 844 SGVEKNQRDEFMRMRPDIWPNSSFPILVLNHEKDG----YRMGTSVANNSEKDQVVRIVS 899 Query: 181 YLLRS----GVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIIL 236 L + G+ DIG+I+ Y Q L+ + L V+ T+D+FQG E++++I Sbjct: 900 LLTKKVKGYGLSESDIGIISFYKAQTSLLADALKKT----DVKCGTIDAFQGTEREVMI- 954 Query: 237 SLVRSNRNGEIGFLRDERRLNV 258 V F+++ R+NV Sbjct: 955 --VCCTNKNPSLFMQEGTRVNV 974 >tr:Q5Z0E2_NOCFA Hypothetical protein. Nocardia farcinica. Length = 943 Score = 107 bits (268), Expect = 2e-23 Identities = 61/268 (22%), Positives = 96/268 (35%), Gaps = 40/268 (14%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 + + S S+ D +IIDEA+Q + + + ++VGD +QL P Sbjct: 494 PVIASTCHSLGASIG-RGRLVDYLIIDEASQV-DLLAAGAAMACCRHLVVVGDLRQLAPV 551 Query: 66 IKSKKAA-----------AKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFY 114 + ++ + + SL E L + L YR P I + +Y Sbjct: 552 VDVPASSCPAAPAPAYDYHRHSILSSLLE-LHGDHLPRTMLREHYRCDPGIIGFCNQKYY 610 Query: 115 EGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEF 174 D P TP + G N E + Sbjct: 611 ----------------ADDLVPFTRATPGHRAMVLVRTERGNHMRTHRDGGKINQREIDV 654 Query: 175 VVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDII 234 V E V + E IG+ TP+ Q +L+ + L +E TV SFQGREK+ I Sbjct: 655 VREEVLPEFCAEFGDEQIGITTPFRRQADLVTDQLIRS-----IESDTVHSFQGREKEAI 709 Query: 235 ILSLV----RSNRNGEIGFLRDERRLNV 258 +++ V RS G + F + +NV Sbjct: 710 VMTTVLDETRSGYRG-LEFADKPQLVNV 736 >tr:Q81BI0_BACCR DNA helicase. Bacillus cereus (strain ATCC 14579 / DSM 31). Length = 769 Score = 107 bits (267), Expect = 2e-23 Identities = 66/279 (23%), Positives = 107/279 (38%), Gaps = 35/279 (12%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 AKV+ T + A FD+V++DE + A + + L K+ ++ GD Sbjct: 323 NAKVIGATLSKCAIDALIYE---RTFDLVVVDEVSMAFVPQIALAASLG-KRIVVCGDFL 378 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVV--------RLNVQYRMHPEICRLPSNL 112 QLPP + + L E +F + L Q RMH +I + ++ Sbjct: 379 QLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEAHPNLFMLQEQRRMHADISKFTNSF 438 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 Y+ + D SV+ R E P D S + + + G Sbjct: 439 IYKNR-VYDHPSVSERKELAQ------LQPFANEASVLFDTSQMGAFSLKDAAS---GSR 488 Query: 173 EFVVE--IVEYLLRSGVPPE--DIGVITPYNGQVE----LIRNILNS-RCSLKPVEVSTV 223 ++ + ++ G+ IGV+TPY Q IR +L + PV +TV Sbjct: 489 FNIMSGLVAMQMMLIGLLDGIQSIGVVTPYRAQSRFLSTCIREMLQRTKYQHIPVLAATV 548 Query: 224 DSFQGREKDIIILSLVRSNRNGEIGFL----RDERRLNV 258 FQG E+D++I V S G L ++ R +NV Sbjct: 549 HKFQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNV 587 >tr:Q6P455_HUMAN DNA2L protein (Fragment). Homo sapiens (Human). Length = 829 Score = 106 bits (265), Expect = 3e-23 Identities = 45/103 (43%), Positives = 69/103 (66%), Gaps = 5/103 (4%) Query: 157 EEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK 216 E+ E G S N EA+ +V + +++G P DIG+I PY Q+++I ++L S+ Sbjct: 673 EQVEKGGVS--NVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIINDLLAR--SIG 728 Query: 217 PVEVSTVDSFQGREKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 VEV+TVD +QGR+K I+++S VRSN++G +G L+D RRLNV Sbjct: 729 MVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNV 771 >tr:Q81NI5_BACAN Conserved domain protein. Bacillus anthracis. Length = 759 Score = 106 bits (264), Expect = 5e-23 Identities = 65/279 (23%), Positives = 107/279 (38%), Gaps = 35/279 (12%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 AKV+ T + A FD+V++DE + A + + L K+ ++ GD Sbjct: 313 NAKVIGATLSKCAIDSLIYE---RTFDLVVVDEVSMAFVPQIALAASLG-KRIVVCGDFL 368 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVV--------RLNVQYRMHPEICRLPSNL 112 QLPP + + L E +F + L Q RMH +I + ++ Sbjct: 369 QLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEAHPNLFMLQEQRRMHADISKFTNSF 428 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 Y+ + D SV+ R E P D S + + + G Sbjct: 429 IYKNR-VYDHPSVSERKELAQ------LQPFANEASVLFDTSQMGAFSLKDAAS---GSR 478 Query: 173 EFVVE--IVEYLLRSGVPPE--DIGVITPYNGQVE----LIRNILNS-RCSLKPVEVSTV 223 ++ + ++ G+ IG++TPY Q IR +L + PV +TV Sbjct: 479 FNIMSGLVAMQMMLIGLLDGVQSIGIVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATV 538 Query: 224 DSFQGREKDIIILSLVRSNRNGEIGFL----RDERRLNV 258 FQG E+D++I V S G L ++ R +NV Sbjct: 539 HKFQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNV 577 >tr:Q639C1_BACCZ Possible DNA helicase. Bacillus cereus (strain ZK). Length = 759 Score = 105 bits (263), Expect = 6e-23 Identities = 66/279 (23%), Positives = 107/279 (38%), Gaps = 35/279 (12%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 AKV+ T + A FD+V++DE + A + + L K+ ++ GD Sbjct: 313 NAKVIGATLSKCAIDSLIYE---RTFDLVVVDEVSMAFVPQIALAASLG-KRIVVCGDFL 368 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVV--------RLNVQYRMHPEICRLPSNL 112 QLPP + + L E +F + L Q RMH +I + ++ Sbjct: 369 QLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEAHPNLFMLQEQRRMHADISKFTNSF 428 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 Y+ + D SV+ R E P D S + + + G Sbjct: 429 IYKNR-VYDHPSVSERKELAQ------LQPFAKEASVLFDTSQMGAFSLKDAAS---GSR 478 Query: 173 EFVVE--IVEYLLRSGVPPE--DIGVITPYNGQVE----LIRNILNS-RCSLKPVEVSTV 223 ++ + ++ G+ IGV+TPY Q IR +L + PV +TV Sbjct: 479 FNIMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATV 538 Query: 224 DSFQGREKDIIILSLVRSNRNGEIGFL----RDERRLNV 258 FQG E+D++I V S G L ++ R +NV Sbjct: 539 HKFQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNV 577 >tr:Q21321_CAEEL Hypothetical protein K08D10.5. Caenorhabditis elegans. Length = 602 Score = 105 bits (263), Expect = 6e-23 Identities = 69/251 (27%), Positives = 104/251 (41%), Gaps = 25/251 (9%) Query: 17 KSLALEKFKFDVVIIDEAAQ-ALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKA 75 LA K FD+ IDEA+Q AL + LL K + ILVGD QLPP + A A Sbjct: 306 PDLAEIKDLFDITFIDEASQLALYVLGSLATLLPKTRIILVGDMHQLPPYT---EDALPA 362 Query: 76 GLEESLFERLVELGVSVVR-----LNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLE 130 L+ + + L V R L +R I L +FY +V R Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPKMITDLLGAVFYGNTLTSTRKAVNRVPI 422 Query: 131 YDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPE 190 ++ FV + + ++ G S+ N EA + +++V L R Sbjct: 423 LEAMELPSHHP--------FVFVNYISQQTQVGKSFSNENEARYALQLVTALKRHAREQN 474 Query: 191 ---DIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEI 247 + V+ Y Q + +I V V+T+D QG+E D+ I+ L RS+ + Sbjct: 475 TTVSVAVLNFYGAQYSYVYSIAED-----GVRVNTIDGCQGQEYDVSIVLLTRSDPYEKS 529 Query: 248 GFLRDERRLNV 258 FL + R+NV Sbjct: 530 KFLVNPNRINV 540 >tr:Q69ZA7_MOUSE MKIAA1769 protein (Fragment). Mus musculus (Mouse). Length = 1622 Score = 105 bits (263), Expect = 7e-23 Identities = 58/225 (25%), Positives = 88/225 (39%), Gaps = 59/225 (26%) Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 +L+GDHKQL P +KS++ + G++ SLFER + L+ QYRMH +IC PS Sbjct: 1385 VVLLGDHKQLRPVVKSEQLQSL-GMDRSLFERYHRD---AIMLDTQYRMHKDICSFPSVE 1440 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEE------EEPEGYSY 166 FY G + + T + + F G E+ E+ S Sbjct: 1441 FYGGK-------LKTWSDLRRLPSILGHTGKPSCSVIFGSVQGHEQKLLVSTEDGNENSR 1493 Query: 167 QNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSF 226 NP E VV V L++ GV V V+++ Sbjct: 1494 ANPEEVTQVVS-VRGLMQRGV----------------------------TGVTVTSITKS 1524 Query: 227 QGREKDIIILSLVRSNRNGEI-------------GFLRDERRLNV 258 QG E +I+S VR+ ++ GF+ D ++NV Sbjct: 1525 QGSEWRYVIVSTVRTCPRSDVDQRPTKSWLKKFLGFVVDPHQVNV 1569 >tr:Q7NC14_MYCGA UvrD. Mycoplasma gallisepticum. Length = 1132 Score = 105 bits (263), Expect = 7e-23 Identities = 57/279 (20%), Positives = 99/279 (35%), Gaps = 61/279 (21%) Query: 18 SLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGL 77 L +K +D VI+DEA+Q + L A KK+I+ GD KQL P+ + + Sbjct: 702 LLENKKDLYDYVIVDEASQVFLERAIPALYRA-KKYIIAGDTKQLQPSSFFSSRSDYDDV 760 Query: 78 EE------------------SLFERLVELGVSVVRLNVQYRMH-PEICRLPSNLFYEGNG 118 SL L E V L YR + ++ ++ Y+ Sbjct: 761 ALDKLADEEILEVEESVNAVSLIHYLKERSRINVVLRYHYRSNFGDLIAFTNDHVYDN-E 819 Query: 119 LVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEI 178 L+ ++ ++ E + + + +N EA+ +V Sbjct: 820 LIFMNKAIKQKE---------------------SFIVHDIIDGKWKDRKNIPEAQAIVSR 858 Query: 179 VEYLLRSGVPPEDIGVITPYNGQVELI---------------RNILNSRCSLKPVEVSTV 223 ++ L ++ + +G++ Q +LI R N + V +V Sbjct: 859 IQRLTKTADYQKSLGIVAFNRSQADLIELMLDKLNDPLVNEWRERNNDNGEYIGLFVKSV 918 Query: 224 DSFQGREKDIIILSLVRSNRNGEIG----FLRDERRLNV 258 ++ QG E+DIII S+ G RLNV Sbjct: 919 ENVQGDERDIIIFSVAYDKSVVSYGPISSTTNGVNRLNV 957 >tr:Q735C1_BACC1 Conserved domain protein. Bacillus cereus (strain ATCC 10987). Length = 759 Score = 105 bits (262), Expect = 9e-23 Identities = 65/277 (23%), Positives = 103/277 (37%), Gaps = 31/277 (11%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 AKV+ T + A FD+V++DE + A + + L K+ ++ GD Sbjct: 313 NAKVIGATLSKCAIDSLIYE---RTFDLVVVDEVSMAYVPQIALAASLG-KRIVVCGDFL 368 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVV--------RLNVQYRMHPEICRLPSNL 112 QLPP + + L E +F + L Q RMH +I + ++ Sbjct: 369 QLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEAHPNLFMLQEQRRMHADISKFTNSF 428 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 Y+ + D SV+ R E P S + S N Sbjct: 429 IYKNR-VYDHPSVSERKELAKLQPFANEASVLFDMSLMGAFSLK---DAASGSRFNI--- 481 Query: 173 EFVVEIVEYLLRSGVPPE--DIGVITPYNGQVE----LIRNILNS-RCSLKPVEVSTVDS 225 + ++ G+ IGV+TPY Q +R +L + PV +TV Sbjct: 482 -MSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCMREMLQKTKYRHIPVLAATVHK 540 Query: 226 FQGREKDIIILSLVRSNRNGEIGFL----RDERRLNV 258 FQG E+D++I V S G L ++ R +NV Sbjct: 541 FQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNV 577 >tr:Q6HGM8_BACHK Possible DNA helicase. Bacillus thuringiensis (subsp. konkukian). Length = 759 Score = 104 bits (261), Expect = 1e-22 Identities = 65/279 (23%), Positives = 106/279 (37%), Gaps = 35/279 (12%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 AKV+ T + A FD+V++DE + A + + L K+ ++ GD Sbjct: 313 NAKVIGATLSKCAIDSLIYE---RTFDLVVVDEVSMAFVPQIALAASLG-KRIVVCGDFL 368 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVV--------RLNVQYRMHPEICRLPSNL 112 QLPP + + L E +F + L Q RMH +I + ++ Sbjct: 369 QLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEVHPNLFMLQEQRRMHADISKFTNSF 428 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 Y+ + D SV+ R E P D + + + G Sbjct: 429 IYKNR-VYDHPSVSERKELAQ------LQPFANEASVLFDTGQMGAFSLKDAAS---GSR 478 Query: 173 EFVVE--IVEYLLRSGVPPE--DIGVITPYNGQVE----LIRNILNS-RCSLKPVEVSTV 223 ++ + ++ G+ IGV+TPY Q IR +L + PV +TV Sbjct: 479 FNIMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATV 538 Query: 224 DSFQGREKDIIILSLVRSNRNGEIGFL----RDERRLNV 258 FQG E+D++I V S G L ++ R +NV Sbjct: 539 HKFQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNV 577 >tr:Q7P614_FUSNV DNA helicase. Fusobacterium nucleatum subsp. vincentii ATCC 49256. Length = 1425 Score = 104 bits (259), Expect = 2e-22 Identities = 68/269 (25%), Positives = 105/269 (39%), Gaps = 46/269 (17%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 KVV +L + KFD+VIIDEA+Q+ + + LL KK I+VGD KQ Sbjct: 976 QKVVPAWIMPLNKVFDTLNPIENKFDIVIIDEASQSDISSLI--LLYMAKKIIVVGDDKQ 1033 Query: 62 LPP--TIKSK---------------KAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPE 104 + P + G+ SL+ +V + L +R PE Sbjct: 1034 VSPSDVGVNMDKINMFRKKYIKGKIANDDLYGVRASLYS-IVSTTFQPISLREHFRSVPE 1092 Query: 105 ICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY 164 I + Y+ L + + L + + VD E Sbjct: 1093 IIGYSNKTSYDNQILPLRDTSSSIL-------------KPAIVEYRVDGKRNE------K 1133 Query: 165 SYQNPGEAEFVVEIVEY-LLRSGVPPEDIGVITPYNG-QVELIRNILNSRCSLKPVEVST 222 + N EAE +V ++E L GVI+ Q ELI+N++ R S +E Sbjct: 1134 NKVNKTEAETIVSLIEACLDMEEYKNSTFGVISLLGDEQAELIQNLIVKRISAVDIENHR 1193 Query: 223 VD-----SFQGREKDIIILSLVRSNRNGE 246 + SFQG E+++I +SLV S+ + Sbjct: 1194 ILCGNSASFQGDERNVIFISLVDSSEENK 1222 >tr:Q9I0B4_PSEAE Hypothetical protein. Pseudomonas aeruginosa. Length = 886 Score = 103 bits (257), Expect = 3e-22 Identities = 66/313 (21%), Positives = 97/313 (30%), Gaps = 80/313 (25%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 + + L L+ FD+VI DEA+Q L L + ++ GD KQ+PPT Sbjct: 398 PVWLMNPDLASRVLPLKAGLFDMVIYDEASQMPVEFALPTLYRGRVT-VVSGDEKQMPPT 456 Query: 66 IKS--------------KKAAAKAGLEESLFER----------------LVELGVSVVRL 95 + A E+ L + L Sbjct: 457 AFFSSRVESDEAELFDGEAPDEDADEEQREAYEDTWNRREIKDCPDLLQLARNALPSTTL 516 Query: 96 NVQYRM-HPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNS 154 + YR + E+ + FY V + + PL + + Sbjct: 517 QIHYRSAYRELIGFSNASFYGNRLSVPVRHPQANILRIK-------------PLELIQVN 563 Query: 155 GVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPE-DIGVITPYNGQVELIRNILNSR- 212 G N EAE VV+ + L R +GV+T Q +LI L R Sbjct: 564 G---LYQNQS---NEREAERVVDYLAELWRQPYAARPSVGVVTFNRKQADLIEERLELRA 617 Query: 213 -------------------CSLKPVEVSTVDSFQGREKDIIILS--LVR------SNRNG 245 V V V++ QG E+D+I+ S R G Sbjct: 618 EQDETFRAAYSEERERSEDGEDMGVFVKNVENVQGDERDVIVFSSTFGRNGQGSFRRNFG 677 Query: 246 EIGFLRDERRLNV 258 +G ERRLNV Sbjct: 678 VLGQTGGERRLNV 690 >tr:Q8REY5_FUSNN DNA helicase. Fusobacterium nucleatum (subsp. nucleatum). Length = 1425 Score = 102 bits (255), Expect = 6e-22 Identities = 65/269 (24%), Positives = 102/269 (37%), Gaps = 46/269 (17%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 KVV +L + KFD+VI+DEA+Q+ + + LL KK I+VGD KQ Sbjct: 976 QKVVPAWIMPLNKVFDTLNPVENKFDIVIVDEASQSDISSLI--LLYMAKKIIVVGDDKQ 1033 Query: 62 LPPTIK-----------------SKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPE 104 + P+ + G+ SL+ +V + L +R PE Sbjct: 1034 VSPSDVGVNIDKINMFRRKYIKGNVANDDLYGVRASLYS-IVSTTFQPISLREHFRSVPE 1092 Query: 105 ICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY 164 I + Y+ L S + L+ G + Sbjct: 1093 IIGYSNKTSYDNQILPLRDSNSSILKPAIVE---------------YKVDGK----RDEK 1133 Query: 165 SYQNPGEAEFVVEIVEY-LLRSGVPPEDIGVITPYNG-QVELIRNILNSRCSLKPVE--- 219 + N EAE +V ++E L GVI+ Q ELI+N++ R +E Sbjct: 1134 NKVNKVEAETIVTLIEACLDMKEYKNSSFGVISLLGDEQAELIQNLIVKRIPAIEIENHK 1193 Query: 220 --VSTVDSFQGREKDIIILSLVRSNRNGE 246 SFQG E+D++ +SLV S+ + Sbjct: 1194 ILCGNPASFQGDERDVMFISLVDSSEENK 1222 >tr:Q60NI1_CAEBR Hypothetical protein CBG22691. Caenorhabditis briggsae. Length = 394 Score = 101 bits (252), Expect = 1e-21 Identities = 53/212 (25%), Positives = 82/212 (38%), Gaps = 12/212 (5%) Query: 49 AKKKFILVGDHKQLPPTIKSKKAAAKAGL--EESLFERLVELGVSVVRLNVQYRMHPEIC 106 + + LVGD QLPP S A L E + + ++ L V R P++ Sbjct: 99 QRARLALVGDIHQLPPFEDSDLPKDLAAFAISRVLQEAIKRRTLPIIDLTVGRRCPPQVT 158 Query: 107 RLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 R+ + LFY L + S + E F +F G S Sbjct: 159 RMYNELFY-NQRLASLWSPEKEAE----LRAFTAALKFGNDFPIQILDLQSSHTQAGTSL 213 Query: 167 QNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSF 226 N EA+ V I + V DIG++ Y Q + +L V T+D Sbjct: 214 TNIEEAKAAVRIARTIQTR-VGTNDIGILCFYKAQAGEVAALLGDAPFY----VGTIDRS 268 Query: 227 QGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E ++I+ + R++ + F+ D RR+NV Sbjct: 269 QGHEFQVVIILITRTSSFRDSEFIEDSRRINV 300 >tr:Q8U4K0_PYRFU Putative DNA helicase. Pyrococcus furiosus. Length = 1278 Score = 101 bits (251), Expect = 2e-21 Identities = 62/269 (23%), Positives = 101/269 (37%), Gaps = 50/269 (18%) Query: 8 TCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIK 67 G L + ++V+IDEA+ + + K + +LVGDH+Q+ P Sbjct: 1016 IVFGTPQTLNKLMKNTKEVELVVIDEASMMDLPMFFLSTKVCKGQVLLVGDHRQMEPIQV 1075 Query: 68 SKKAAAKAGLEESLFERLVELGV-----------------------------------SV 92 + E + L L + Sbjct: 1076 HEWQLEDRKTFEEHYPFLSALNFIRFLRGELDERELKKFKRILGREPPEWKKDKNEVLPL 1135 Query: 93 VRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVD 152 RL YR+ EI L S+ Y +G+ IS +R + + + F + FV Sbjct: 1136 YRLVRTYRLPQEIADLLSDAIYRADGIKLISEKKKRRKIIARHKDEFLSIVLDDRYPFVL 1195 Query: 153 NSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSR 212 E + N EA+ V +I++ V DIGV+ PY Q LI ++++S Sbjct: 1196 ILHDE----GNSTKINELEAKIVEKIIK-----RVENIDIGVVVPYRAQKRLIASLIDSA 1246 Query: 213 CSLKPVEVSTVDSFQGREKDIIILSLVRS 241 +V TV+ FQG EK +I++S+ S Sbjct: 1247 ------QVDTVERFQGGEKSLIVISMTSS 1269 >tr:Q7VCY3_PROMA Superfamily I DNA/RNA helicase. Prochlorococcus marinus. Length = 1185 Score = 100 bits (249), Expect = 3e-21 Identities = 62/250 (24%), Positives = 92/250 (36%), Gaps = 34/250 (13%) Query: 26 FDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERL 85 FD++++DEA Q L+ + + +LVGD QL ++ + L + Sbjct: 910 FDLLVVDEAGQVS-LSNLLFMSQCARNILLVGDQNQLSQPNRA-AHPENSDLSCLDYMMG 967 Query: 86 VELGVSV---VRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTP 142 E V V L +RM P + + S LFY+G IS Sbjct: 968 DEKIVPTDRGVFLATSWRMPPSLTSVVSELFYQGELQSCISKSE----------NKILWE 1017 Query: 143 QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY-----------LLRSGVPPED 191 LSF + + Y LL+ + ++ Sbjct: 1018 GLQQGLSFEPVEHSSNSSESKEEIDRIEQLVNQLLGCSYQLVQQNSEGTSLLQGIIGRDE 1077 Query: 192 IGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRS---NRNGEIG 248 I + PYN QV + L+S+ + TVD FQG++ I I SL S N IG Sbjct: 1078 ILITAPYNLQVNRLERRLSSKA-----RIGTVDRFQGQQAPISIHSLTASDAENAPRGIG 1132 Query: 249 FLRDERRLNV 258 F+ D RLNV Sbjct: 1133 FVLDPDRLNV 1142 >tr:Q8SQK2_ENCCU DNA REPLICATION HELICASE. Encephalitozoon cuniculi. Length = 934 Score = 99.9 bits (248), Expect = 4e-21 Identities = 66/255 (25%), Positives = 93/255 (36%), Gaps = 68/255 (26%) Query: 10 TGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSK 69 G +FD +IDE +Q LIP+ ++ KKF++VGDH QL P +S Sbjct: 718 VGTCFSFADPIYVNRQFDFCVIDEGSQMHLLLTLIPVSIS-KKFVIVGDHLQLKPLSRSS 776 Query: 70 KAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRL 129 K L SLFE L+ S L QYRM EI RL + LFY Sbjct: 777 K-----DLSLSLFEHLLGEDHSK--LRTQYRMGSEIMRLSNTLFYGNQ------------ 817 Query: 130 EYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPP 189 + + F+D G++ + +V Sbjct: 818 ---------LRGEKKPSTVQFIDTEGID-----------------FMSLVSSF------- 844 Query: 190 EDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSL-------VR-S 241 E ++ +N QV LIR + V TVD FQG E D +++ V S Sbjct: 845 EKCTILCYFNAQVGLIREKTSCA-------VETVDRFQGSEDDKVVVVFDPVSKCEVMES 897 Query: 242 NRNGEIGFLRDERRL 256 N + R + L Sbjct: 898 NERLNVALTRARKHL 912 >tr:Q8IJU3_PLAF7 Hypothetical protein. Plasmodium falciparum (isolate 3D7). Length = 1789 Score = 99.9 bits (248), Expect = 4e-21 Identities = 51/157 (32%), Positives = 71/157 (45%), Gaps = 13/157 (8%) Query: 25 KFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 KFD +IIDE++Q++E + LIPL A K ILVGD KQL T+ S A SLFER Sbjct: 1068 KFDAIIIDESSQSVEIDILIPLSFACNKIILVGDPKQLSATVFSLYAKKH-KYARSLFER 1126 Query: 85 LVELGVSVVR----LNVQYRMHPEICRLPSNLFYEGNG--------LVDISSVARRLEYD 132 L + ++ R L++QYRMHPEI P +Y+ V + Sbjct: 1127 LQKKYLTNERKYNLLSIQYRMHPEISAFPKKCYYKNKIRDAPHFLFTVLKELEISKYIKR 1186 Query: 133 SANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNP 169 N I ++ + N ++E QN Sbjct: 1187 KKNTKSITNITNIKNITNITNIKRDDENESNDEVQNK 1223 Score = 62.1 bits (150), Expect = 9e-10 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 14/111 (12%) Query: 149 SFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE---YLLRSGVPPED---IGVITPYNGQV 202 S + +++ SY N E+E V+ +E Y+ S + IG+ITPY + Sbjct: 1273 SVFYDISFSKQKKIKNSYINVEESEVVIHFIEFLHYIFMSENMTQWYKRIGIITPYATEK 1332 Query: 203 ELIRNILNSRCSLKP--------VEVSTVDSFQGREKDIIILSLVRSNRNG 245 ++ IL K ++V TVD FQG EKD+II VR+ N Sbjct: 1333 FFLKKILKRFFISKGYSKNISNFIDVGTVDGFQGTEKDMIIFVCVRTKGNL 1383 >tr:Q51L87_MAGGR Hypothetical protein. Magnaporthe grisea 70-15. Length = 852 Score = 98.7 bits (245), Expect = 8e-21 Identities = 69/285 (24%), Positives = 107/285 (37%), Gaps = 34/285 (11%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLA-KKKFILVGDH 59 E +A T AAS +FK D+V+ DEA A E LIP+ +I GD Sbjct: 503 EVDFLAATPIAAASLADG----RFKPDIVLFDEAPHARELANLIPIAHFSPMAWIFTGDF 558 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 +Q + S K + L+ S+ ER G + L + +R + ++PSNLFY+ + Sbjct: 559 RQTGCYVGSDKNPWEIQLKMSVMERAHYAGATTHELLMNHRAFATLHQMPSNLFYDAKMV 618 Query: 120 VDISSVARRLEYDSANPGFFPTP-----QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEF 174 ++ + Q +P S+ N + Sbjct: 619 TGHTADTIVPSPTRFICKWMEANLTGGSQVTIPRILAHVRNANASTKVDSSFWNQTHHAW 678 Query: 175 VVEIVEYLL--------RSGVPPEDIGVITPYNGQV--------ELIRNILNSRCS---- 214 ++ LL P I +I PY V +L R + ++ Sbjct: 679 TMQQARKLLSNPNFVSVDGQSRPGTILIIAPYRQAVTQYKRAAGDLCRELAEAQGVPAKT 738 Query: 215 -LKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 L +EV +VD+ QG E D + LVR FL D++RL V Sbjct: 739 MLTRLEVRSVDTVQGHEADFVFFDLVR---EKPTEFLDDDKRLAV 780 >tr:Q6WPL2_ECOLI Putative UvrD/REP helicase-like protein. Escherichia coli. Length = 893 Score = 98.0 bits (243), Expect = 1e-20 Identities = 66/272 (24%), Positives = 94/272 (34%), Gaps = 53/272 (19%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 K + + S S+ D VIIDEA+Q ++ L + I+VGD KQL Sbjct: 460 KRFPVIGSSTHSIINSIGK-GALLDYVIIDEASQQDIVPGILGLG-CARNVIVVGDRKQL 517 Query: 63 PPTI-----------KSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSN 111 P + + L+ L V V L YR HP+I + + Sbjct: 518 PHVPVLLPSSPPPPAEYYNCEKYSLLDS--VCMLFRNMVPVTLLKEHYRCHPKIIQFCNK 575 Query: 112 LFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGE 171 LFY+ I E + + E E EG+ + Sbjct: 576 LFYDNA---LIPLTVDSGEASLSLVITAKGNHTRNFSNLR-----ELESLEGHYWD---- 623 Query: 172 AEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREK 231 G I PYN QV L +L + STV FQGRE Sbjct: 624 ----------------EESSRGYIAPYNAQVNLAEKVLPADFVK-----STVHKFQGREC 662 Query: 232 DIIILSLV----RSNR-NGEIGFLRDERRLNV 258 D I+ S V RS++ + I F+ + +NV Sbjct: 663 DEIVFSTVLDKKRSSQHSRNIAFVDNPELVNV 694 >tr:Q6AE19_LEIXX Hypothetical protein. Leifsonia xyli (subsp. xyli). Length = 1041 Score = 97.2 bits (241), Expect = 2e-20 Identities = 62/266 (23%), Positives = 101/266 (37%), Gaps = 37/266 (13%) Query: 10 TGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSK 69 A + + + D++++D A Q A I + +A + +L+GD +QLP + + Sbjct: 748 GTAWDFANAARVPRGSLDLLVVDGAGQFSLAST-IAVGVAARNLLLLGDPQQLPQVSQGR 806 Query: 70 --KAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVAR 127 + + L V L RM PE+ R S L YEG + A Sbjct: 807 HPEPIDGSALGRVSAGHQVLPPEYGYFLAETRRMRPELVRAVSVLSYEGW---LRAHPAA 863 Query: 128 RLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLL---- 183 R V + G + +P E V +++ L+ Sbjct: 864 RELQL-----------HGVEPGLHPVA----VRHTGNATASPEEEAVVADLIGELVGRSW 908 Query: 184 --------RSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIII 235 + D+ V+TPYN Q+ +R + + V V TVD FQG+E + I Sbjct: 909 TDAGAGRYDDPLGEADVIVVTPYNAQLAEVRAAVEAAGFA-GVRVGTVDKFQGQEAVVAI 967 Query: 236 LSLVRSNR---NGEIGFLRDERRLNV 258 +SL S+ + FL + RLNV Sbjct: 968 VSLAVSSTAEAPRGMSFLLMKNRLNV 993 >tr:Q7AFD5_ECO57 Hypothetical protein ECs1384. Escherichia coli O157:H7. Length = 645 Score = 96.0 bits (238), Expect = 4e-20 Identities = 65/272 (23%), Positives = 93/272 (34%), Gaps = 53/272 (19%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 K + + S S+ D VIIDEA+Q ++ L + I+VGD KQL Sbjct: 212 KRFPIIGSSTHSIINSIGK-GALLDYVIIDEASQQDIVPGILGLG-CARNVIVVGDRKQL 269 Query: 63 PPT-----------IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSN 111 P + + L+ L V V L YR HP+I + + Sbjct: 270 PHVPVLLPNSPSPPAEYYNCEKYSLLDS--VCMLFRNMVPVTLLKEHYRCHPKIIQFCNK 327 Query: 112 LFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGE 171 FY+ I E + + E E EG+ + Sbjct: 328 QFYDNA---LIPLTVDSGEASLSLVITAKGNHTRNFSNLR-----ELESLEGHYWD---- 375 Query: 172 AEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREK 231 G I PYN QV L +L + STV FQGRE Sbjct: 376 ----------------EESSRGYIAPYNAQVNLAEKVLPADFVK-----STVHKFQGREC 414 Query: 232 DIIILSLV----RSNR-NGEIGFLRDERRLNV 258 D I+ S V RS++ + I F+ + +NV Sbjct: 415 DEIVFSTVLDKKRSSQHSRNIAFVDNPELVNV 446 >tr:Q8X9M6_ECO57 , complete genome. Escherichia coli O157:H7. Length = 711 Score = 96.0 bits (238), Expect = 5e-20 Identities = 65/272 (23%), Positives = 93/272 (34%), Gaps = 53/272 (19%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 K + + S S+ D VIIDEA+Q ++ L + I+VGD KQL Sbjct: 278 KRFPIIGSSTHSIINSIGK-GALLDYVIIDEASQQDIVPGILGLG-CARNVIVVGDRKQL 335 Query: 63 PPT-----------IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSN 111 P + + L+ L V V L YR HP+I + + Sbjct: 336 PHVPVLLPNSPSPPAEYYNCEKYSLLDS--VCMLFRNMVPVTLLKEHYRCHPKIIQFCNK 393 Query: 112 LFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGE 171 FY+ I E + + E E EG+ + Sbjct: 394 QFYDNA---LIPLTVDSGEASLSLVITAKGNHTRNFSNLR-----ELESLEGHYWD---- 441 Query: 172 AEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREK 231 G I PYN QV L +L + STV FQGRE Sbjct: 442 ----------------EESSRGYIAPYNAQVNLAEKVLPADFVK-----STVHKFQGREC 480 Query: 232 DIIILSLV----RSNR-NGEIGFLRDERRLNV 258 D I+ S V RS++ + I F+ + +NV Sbjct: 481 DEIVFSTVLDKKRSSQHSRNIAFVDNPELVNV 512 >tr:Q8RDR3_FUSNN DNA helicase. Fusobacterium nucleatum (subsp. nucleatum). Length = 849 Score = 96.0 bits (238), Expect = 6e-20 Identities = 67/270 (24%), Positives = 98/270 (36%), Gaps = 54/270 (20%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 + + S R SL +D +I+DEA+Q A + L A + ++VGD KQLP Sbjct: 420 PVILSTTFSSRNSLN-SDVVYDYLIMDEASQVDIATGALALSSA-RNAVIVGDTKQLPNI 477 Query: 66 I----------------KSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLP 109 + S+ +S+ + V V+ V L YR HP+I Sbjct: 478 VTNDIKNKAKGIFDTFNMSEGYQYTKSFLQSILD--VIPNVTQVLLREHYRCHPKIINFC 535 Query: 110 SNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNP 169 + FY G I + E D + V + E N Sbjct: 536 NQKFYRG---ELIIMTTDKGEKDVLSVVKTRVGNHERNHYSQRQIDVIKNEIIPKYILNS 592 Query: 170 GEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGR 229 E G+ITPY QVE + + ++ STV FQG+ Sbjct: 593 KEC--------------------GIITPYKNQVEAL------NKEITNIDASTVHKFQGK 626 Query: 230 EKDIIILSLVRSNRNGEIG-FLRDERRLNV 258 EK+ II+S V + EI F D +NV Sbjct: 627 EKENIIISTV----DDEISDFADDPYLINV 652 >tr:Q7RQA7_PLAYO Hypothetical protein. Plasmodium yoelii yoelii. Length = 2120 Score = 95.7 bits (237), Expect = 6e-20 Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 8/95 (8%) Query: 169 PGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSL-----KPVEVSTV 223 +AE V I Y+ G E I ++T YNGQ ELI +IL C P +V+TV Sbjct: 1939 HKKAEMAVAIFMYMRLIGYSNEMITILTTYNGQKELILDILKKNCLYNKLIGVPKKVTTV 1998 Query: 224 DSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 D +QG++ D +I+SLVRS IG++++ +RL V Sbjct: 1999 DKYQGKQNDFVIISLVRSKS---IGYMKNVKRLIV 2030 Score = 64.1 bits (155), Expect = 2e-10 Identities = 23/51 (45%), Positives = 33/51 (64%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKK 52 A+V+AMTCT A+ R +A +F FD +IIDE Q E + +PLLL + + Sbjct: 1887 ARVIAMTCTHASINRSKIAKLQFYFDNIIIDECTQITENDTFLPLLLQENR 1937 >tr:Q6CHW3_YARLI Yarrowia lipolytica chromosome A of strain CLIB99 of Yarrowia lipolytica. Yarrowia lipolytica (Candida lipolytica). Length = 527 Score = 95.7 bits (237), Expect = 7e-20 Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 10/127 (7%) Query: 140 PTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPE---DIGVIT 196 + + + P F + G + + +S+ N E +F ++V +L+ V DIG+++ Sbjct: 339 HSTEHLPPYMFFNVEGKHK-FGDNHSFCNTAEIQFANKLVSAVLK-CVGAGEKLDIGIVS 396 Query: 197 PYNGQVELIRNILNSRC----SLKPVEVSTVDSFQGREKDIIILSLVRS-NRNGEIGFLR 251 PY QVE +R+ R +E+ TVDS QGREKDIII+S VR+ +GFL Sbjct: 397 PYKQQVEKLRHHFEQRYDTEKETMTLEIQTVDSLQGREKDIIIMSCVRAHPTAHTVGFLA 456 Query: 252 DERRLNV 258 D RR+NV Sbjct: 457 DVRRMNV 463 >tr:Q09594_CAEEL Hypothetical protein R03D7.2. Caenorhabditis elegans. Length = 542 Score = 94.9 bits (235), Expect = 1e-19 Identities = 64/245 (26%), Positives = 98/245 (40%), Gaps = 25/245 (10%) Query: 23 KFKFDVVIIDEAAQ-ALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESL 81 K +FD+ IDEA+Q AL + +L K + ILVGD QLPP + A A L+ + Sbjct: 213 KDRFDITFIDEASQLALYVLGSLATMLPKSRMILVGDMHQLPP---YMEEALPAELKRAA 269 Query: 82 FERLVELGVSVVR-----LNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANP 136 + L V R L +R I + +LFY V + Sbjct: 270 IGEPLTLAVKGRRWPSMHLTRVHRCPKMITEVLGDLFYGNTLTSSKPGVTDIPVLKAMGL 329 Query: 137 GFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPED---IG 193 F + + G S+ N GEA + +++VE L R Sbjct: 330 PSRHPMVF--------VNYTSPQTAVGKSFSNEGEARYALQLVEALTRYASTANKKITAA 381 Query: 194 VITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDE 253 ++ Y Q + ++ V V+T+D QG+E D+ I+ L RS+ FL + Sbjct: 382 ILNFYGAQYSYVYSMAED-----EVTVNTIDGCQGQEYDVTIVLLTRSDPYERSKFLVNA 436 Query: 254 RRLNV 258 R+NV Sbjct: 437 NRINV 441 >tr:Q8KC08_CHLTE DNA helicase, putative. Chlorobium tepidum. Length = 1510 Score = 94.1 bits (233), Expect = 2e-19 Identities = 67/284 (23%), Positives = 97/284 (34%), Gaps = 49/284 (17%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 A + A +S+ + FD+VI+DEA+Q + L +L K ++VGD KQ Sbjct: 1068 ASAIPCWIMSHAKVSESMPADIGAFDLVIVDEASQ-SDIWALPAILRGKT-ILVVGDDKQ 1125 Query: 62 LPPTIKSKKAAAKAGLE----------------ESLFERLVE-LGVSVVRLNVQYRMHPE 104 + P A L SL++ V L +R P Sbjct: 1126 VSPDAGFVSAQRVQELRDRFLAEQPFREAMTPGSSLYDLAARVFAARQVMLREHFRCVPP 1185 Query: 105 ICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY 164 I + FY+G + P P + VD Sbjct: 1186 IIAYSNRTFYKG----------------AIQPLRIPKGSERIDPPLVDVHVENGVRSRDD 1229 Query: 165 SYQNPGEAEFVV-EIVEYLLRSGVPPEDIGVITPYN-GQVELIRNILNSRC-----SLKP 217 S N EA F+ EI L IGV++ Q + I + RC + Sbjct: 1230 S--NREEASFIAEEIAALLADERFAGRTIGVVSLLGMEQAKYIDTLARKRCNTAELFRRK 1287 Query: 218 VEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRD---ERRLNV 258 E +FQG E+DI+ LS+V G L E+R NV Sbjct: 1288 FECGDARTFQGSERDIMFLSMVV--DPGNCKALSGNMFEQRFNV 1329 >tr:Q9PPR8_UREPA Conserved hypothetical ATP/GTP-binding protein. Ureaplasma parvum (Ureaplasma urealyticum biotype 1). Length = 1367 Score = 90.6 bits (224), Expect = 2e-18 Identities = 61/284 (21%), Positives = 98/284 (34%), Gaps = 55/284 (19%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 ++ + + + L + +FD I DEA+Q + K K ++ GD KQ Sbjct: 926 KRLFPIWVARPDNVASLIPLVENEFDYGIFDEASQMTIERSYPIVYRCKTK-VVSGDDKQ 984 Query: 62 LPPTIKSKKAAAKAGLE-------ESLFERLVELGVSVVRLNVQYRMHP-EICRLPSNLF 113 L PT A + E +SL ER + L YR E+ + Sbjct: 985 LKPTSFFINKLADSDFEIDDFDKVDSLLERAKTSWWNEYHLKNHYRSDSKELIEFSNKYI 1044 Query: 114 YEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAE 173 Y N V F + ++ +GV E NP EAE Sbjct: 1045 YNNNLEVA-----------------TRQGAFEKGIDVINVNGVWE-------KGNPLEAE 1080 Query: 174 FVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRC-----------SLKPVEVST 222 + L+ + E I ++T Q L+ N+L R + ++ Sbjct: 1081 QTIA---TLIDNWKKYEKILIVTFNAIQASLVENLLFERMNIFEKGLCDKIENNEIVITN 1137 Query: 223 VDSFQGREKDIIILSLVRS--------NRNGEIGFLRDERRLNV 258 +++ QG E D++ILS+ N G + RLNV Sbjct: 1138 LENVQGNEGDLVILSIAYGPNPEGNLRNNFGPLNAKGGMNRLNV 1181 >tr:Q7RBE5_PLAYO Hypothetical protein. Plasmodium yoelii yoelii. Length = 729 Score = 89.5 bits (221), Expect = 5e-18 Identities = 55/295 (18%), Positives = 93/295 (31%), Gaps = 78/295 (26%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK-KKFILVGDH 59 + K V + + L K + +I DE Q E L + KK IL+GD Sbjct: 376 KNKRVIAGTCKSLYIFEKLNTIKDSINYLIADECTQIDELTLLKFFIRYSIKKIILIGDI 435 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELG--------------VSVVRLNVQYR----- 100 QL IKSK + L SLF RL+E + + V Y Sbjct: 436 MQLGFVIKSK-----SDLCRSLFSRLIENELFIKYFFIKQCKNDIENKEIVVNYDKPNLI 490 Query: 101 ----------MHPEICRL-------PSNLFYEGNGLVDISSVARRLEYDSANPGFFPTP- 142 + +I +L N YE + + Y + Sbjct: 491 NVKTNISVNSLVDQITKLTEFEYSNYKNEIYEHMFNIHYEKYEQNNLYINKLIIMNKQYR 550 Query: 143 --------------------------------QFIVPLSFVDNSGVEEEEPEGYSYQNPG 170 ++ L+F+ + + N Sbjct: 551 CHPDISNICSHLFYNNYINNAKCTQNNNIIYNKYNAHLNFILIRKKYKGIHSNSYFINIL 610 Query: 171 EAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSL---KPVEVST 222 EA ++ I E ++ + + P+ IG+I+ + Q I+N + + K ++VST Sbjct: 611 EANIILNICENMISNKINPDQIGIISLFRYQAIYIKNKMKFSKNYDILKRIKVST 665 >tr:Q5R0V0_IDILO Superfamily I DNA/RNA helicase. Idiomarina loihiensis. Length = 910 Score = 89.5 bits (221), Expect = 5e-18 Identities = 65/271 (23%), Positives = 95/271 (35%), Gaps = 46/271 (16%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 + + + S SL + D IIDEA+Q ++ L + I+VGD KQL Sbjct: 460 QRFPIMGSSTHSIINSLD-QGTILDFAIIDEASQQDIIPGILALG-CARNVIIVGDRKQL 517 Query: 63 P---------PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLF 113 P P + LE F R+ + + L YR HP+I + + F Sbjct: 518 PHIPNQTGILPPSDMYDCEKHSLLES--FTRVFSGSIPITLLKEHYRCHPKIIQFCNQQF 575 Query: 114 YEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAE 173 Y V G Y N E E Sbjct: 576 YNNE-----------------LIPMRDDTAKNPLELIVTAKGNHARG-----YSNKRELE 613 Query: 174 FVVEIVEYLLRSGVPPE-DIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKD 232 ++++ +G G I PYN QV L R+ L + T FQGRE D Sbjct: 614 SLIKVQTENEGAGWDERNSKGFIAPYNAQVNLSRSHLPTDFVR-----KTTHKFQGRECD 668 Query: 233 IIILSLV----RSNRN-GEIGFLRDERRLNV 258 I+ S V SN++ +I F+ + +NV Sbjct: 669 EIVFSTVLDKKLSNQSERKITFVDNPNLVNV 699 >tr:Q8GA10_ECOLI Hypothetical protein. Escherichia coli. Length = 1171 Score = 89.1 bits (220), Expect = 7e-18 Identities = 61/312 (19%), Positives = 103/312 (33%), Gaps = 64/312 (20%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKF-------------DVVIIDEAAQALEAECLIPLL 47 K+ ++ + + K D++I+DEA Q L Sbjct: 653 RMKLTPCVVMTCYMLPGNMQISEHKGQRKFEKSYLYDFADLLIVDEAGQVLPEVAAASFA 712 Query: 48 LAKKKFILVGDHKQLPPT----------------IKSKKAAAKAGLEESLFERLVELGVS 91 LAKK + +GD +QLPP I S + + + + +LG S Sbjct: 713 LAKKALV-IGDTEQLPPIWSIAPAIDVGNMLAEKILSGSTQEEITEK---YTAIADLGKS 768 Query: 92 VVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARR--LEYDSANPGFFPTP------- 142 +V +I + S Y+ + R + Sbjct: 769 AASGSVM-----KIAQFASRYQYDPELARGMYLYEHRRCYDNIIGYCNTLCYHGKLLPKR 823 Query: 143 -----QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFV---VEIVEYLLRSGVP---PED 191 + + ++ G E G S N EAE + + + + + E Sbjct: 824 GREESNLMPEMGYLHIDGKGELASSG-SRYNLLEAETIAVWLAENQQNIEAHYGKSLHEV 882 Query: 192 IGVITPYNGQVELIRNILNSRCSLKP-----VEVSTVDSFQGREKDIIILSLVRSNRNGE 246 +G++TP++ QV I+ +L + + V TV S QG E+ I+I S V S Sbjct: 883 VGIVTPFSAQVSTIKQVLGKQGISTGANEKSLTVGTVHSLQGAERAIVIFSPVYSKHEDG 942 Query: 247 IGFLRDERRLNV 258 D LNV Sbjct: 943 GFIDSDNSMLNV 954 >tr:Q5ZZU6_MYCHY ABC transporter ATP binding protein. Mycoplasma hyopneumoniae. Length = 1066 Score = 88.7 bits (219), Expect = 9e-18 Identities = 62/240 (25%), Positives = 95/240 (39%), Gaps = 44/240 (18%) Query: 17 KSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT------IKSKK 70 + + EK FD VIIDEA+Q E L L K K +LVGDH+Q+ P I + Sbjct: 655 ELIMFEKKYFDYVIIDEASQMFLEEALPLLFYGKIK-VLVGDHQQMQPIRWFASKINEES 713 Query: 71 AAAKAGLEESLFERLVELGVSVVRLNVQYRMHPE-ICRLPSNLFYEGNGLVDISSVARRL 129 ES+ E GV + L+ YR H + S FYE +A Sbjct: 714 EDDAFANIESILEYAHSKGVFNIMLDKNYRSHHASLMTFNSRHFYE-----SELKIANNY 768 Query: 130 EYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPP 189 +++ D V+ + QN EA+ VVEI + + + P Sbjct: 769 KFEGT-----------------DVIEVQNVNGQWDGQQNLVEAKAVVEIAQKNI-NKFPT 810 Query: 190 EDIGVITPYNGQVELIRNILNSRCSLKPVE---------VSTVDSFQGREKDIIILSLVR 240 I + Q I I+ S +E V+++++ QG E D++I+S+ Sbjct: 811 MII--LAFNKNQQNAIERIIFE--SYPEIEKLIYTDKIIVNSLENIQGDEADLVIISVAY 866 >tr:Q5YQK6_NOCFA Hypothetical protein. Nocardia farcinica. Length = 1113 Score = 88.3 bits (218), Expect = 1e-17 Identities = 58/250 (23%), Positives = 97/250 (38%), Gaps = 28/250 (11%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 A + + S + D+++I +A + AE + + + +L+GD + Sbjct: 825 NAVNGCVIGGLPSDFADSRRVPAGGLDLLVIADAGRFPLAE-VAAVAGTARNLLLLGDPQ 883 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 P AAA++ L R L+ +RMHP +C + L+Y+G Sbjct: 884 PATPRAAHPAAAAESVLGWLSEGRDTVPAHLGYFLDSTWRMHPRVCEPLARLYYDGRLAA 943 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + + R T G S ++ EA VV V Sbjct: 944 NETVTTARQLDGVTPGIETVTVTH-----------------RGDSTESVAEAREVVRQVR 986 Query: 181 YLLRSG---------VPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREK 231 LL + P D+ V+ PY+ QV IR +L +R + V V TVD F+GRE Sbjct: 987 GLLGRPWTAGGATRRLHPHDLFVVAPYDAQVGRIRTLL-ARAKIDDVLVGTVDRFRGREA 1045 Query: 232 DIIILSLVRS 241 ++++S+ S Sbjct: 1046 AVVLVSMTTS 1055 >tr:Q6Q9H5_MYCHY ATP binding protein. Mycoplasma hyopneumoniae. Length = 1182 Score = 88.3 bits (218), Expect = 1e-17 Identities = 62/240 (25%), Positives = 95/240 (39%), Gaps = 44/240 (18%) Query: 17 KSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT------IKSKK 70 + + EK FD VIIDEA+Q E L L K K +LVGDH+Q+ P I + Sbjct: 655 ELIMFEKKYFDYVIIDEASQMFLEEALPLLFYGKIK-VLVGDHQQMQPIRWFASKINEES 713 Query: 71 AAAKAGLEESLFERLVELGVSVVRLNVQYRMHPE-ICRLPSNLFYEGNGLVDISSVARRL 129 ES+ E GV + L+ YR H + S FYE +A Sbjct: 714 EDDAFANIESILEYAHSKGVFNIMLDKNYRSHHASLMTFNSRHFYE-----SELKIANNY 768 Query: 130 EYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPP 189 +++ D V+ + QN EA+ VVEI + + + P Sbjct: 769 KFEGT-----------------DVIEVQNVNGQWDGQQNLVEAKAVVEIAQKNI-NKFPT 810 Query: 190 EDIGVITPYNGQVELIRNILNSRCSLKPVE---------VSTVDSFQGREKDIIILSLVR 240 I + Q I I+ S +E V+++++ QG E D++I+S+ Sbjct: 811 MII--LAFNKNQQNAIERIIFE--SYPEIEKLIYTDKIIVNSLENIQGDEADLVIISVAY 866 >tr:Q9PQA1_UREPA Conserved hypothetical ATP/GTP-binding protein. Ureaplasma parvum (Ureaplasma urealyticum biotype 1). Length = 1284 Score = 88.0 bits (217), Expect = 1e-17 Identities = 66/283 (23%), Positives = 96/283 (33%), Gaps = 58/283 (20%) Query: 5 VAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPP 64 + + + L L FD I DEA+Q + I+ GD KQL P Sbjct: 867 FPIWISKPELVSEMLPLISKSFDYGIFDEASQMFLERSYPSIYRCNIN-IVAGDDKQLCP 925 Query: 65 TIKSKKAAAKAGLE---------ESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYE 115 T E ESL +R S L YR + E SN Sbjct: 926 TNFFINRQENENDEFELADVDVAESLLDRAKTALWSEYLLKNHYRSNREDLISFSNDNIY 985 Query: 116 GNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFV 175 L S F + +D GV E E N EA+ + Sbjct: 986 NGDLHFASKNGL----------------FDPGMEIIDVEGVFENE-------NVIEAQKI 1022 Query: 176 VEIVEYLLRSGVPPEDIGVITPYNGQVELIRNIL----------NSRCSLKPVEVSTVDS 225 +E+++ + + I VIT Q ELI N++ R + V+ +++ Sbjct: 1023 MEVLKE-RAANY--QKIIVITFNIKQSELIENLILQTFSFNDVVYQRFENDEIIVTNLEN 1079 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDE----------RRLNV 258 QG E D++ILS+ + I LR+ RLNV Sbjct: 1080 VQGNEADLVILSVTYAKNKEGI--LRNNYGPLMKKGGANRLNV 1120 >tr:Q72WK4_DESVH Hypothetical protein. Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303). Length = 1176 Score = 87.6 bits (216), Expect = 2e-17 Identities = 58/277 (20%), Positives = 92/277 (33%), Gaps = 64/277 (23%) Query: 27 DVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIK------------------- 67 D++I+DEA QA + LAK+ + VGD Q+ P K Sbjct: 709 DLLILDEAGQAGPDKAAAVFALAKRGLV-VGDVHQIEPVYKIPVSVDLGNLKRNNVYVGR 767 Query: 68 ----------SKKAAAKAGLEESLFERLVELGVSV----VRLNVQYRMHPEICRLPSNLF 113 SK +A + + S + + G + L R H +I L Sbjct: 768 EEEMPRAVAVSKGSAMRMAQDASPY-HCILNGHPAEERGMYLLEHRRCHKDIIGYCKELV 826 Query: 114 YEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAE 173 Y ++ PL + + +G S+ NP EA Sbjct: 827 YPHLEVLTRQEPDDFYL--------------FPPLGYAHIPSSGQ--KKGGSWCNPYEAH 870 Query: 174 FVVEIV---EYLLRSGVPPED----IGVITPYNGQVELIRNILN----SRCSLKPVEVST 222 + + + + + I ++TP+ QV +R + + V V T Sbjct: 871 NIAQWLADNRDRILARYKASSLASVIAIVTPFARQVSSLRESMQGCLPESDYAEMV-VGT 929 Query: 223 VDSFQGREKDIIILSLVRSNRNGEIGFL-RDERRLNV 258 V QG E+ II+ S V N + F R LNV Sbjct: 930 VHKLQGAERPIIVFSPVYGPGNVAVPFFDRGRNMLNV 966 >tr:Q8EUS4_MYCPE Predicted ATP/GTP-binding protein. Mycoplasma penetrans. Length = 1264 Score = 86.0 bits (212), Expect = 6e-17 Identities = 60/264 (22%), Positives = 93/264 (35%), Gaps = 50/264 (18%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 V + + + +K F+ I DEA+Q L + I+ GD KQL Sbjct: 836 VFPIWVSRPEQVATFVPFKKNFFNYGIFDEASQMFLERAYPLLHRCETN-IVAGDDKQLR 894 Query: 64 PTIKS---------KKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHP-EICRLPSNLF 113 P+ + +ESL +R VV L YR E+ + S Sbjct: 895 PSNFFVSRMDDEEDEYEIDDLDTQESLLDRAKLTAWVVVMLKNHYRSKSQELIKFSSEFI 954 Query: 114 YEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEG--YSYQNPGE 171 Y+G L Y +AN F VE E G N E Sbjct: 955 YDGK-----------LNYATAN-------------GFNYFPAVELIEANGLFEDRVNKKE 990 Query: 172 AEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIR----------NILNSRCSLKPVEVS 221 AE V++ +E + + VIT Q I+ ++S+ +EV Sbjct: 991 AEIVLQTLEKY-KDDYK--KVLVITFNVNQKTYIQSLLSDNKNISKEISSKFLNDEIEVV 1047 Query: 222 TVDSFQGREKDIIILSLVRSNRNG 245 +++ QG E D++ILS+ +N Sbjct: 1048 NIENVQGNEADLVILSIGYGRKND 1071 >tr:Q9X5H6_HELPY Urease-enhancing factor helB. Helicobacter pylori (Campylobacter pylori). Length = 185 Score = 84.9 bits (209), Expect = 1e-16 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 21/163 (12%) Query: 101 MHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEE 160 M I L S LFY E + + + E + Sbjct: 1 MPASIGSLVSQLFY--------------KEKLKNGVIKNTSQFYDPKNIIRWINVEGEHK 46 Query: 161 PEGYSYQNPGEAEFVVEIVEYL--LRSGVPPED-IGVITPYNGQVELIRNILNSRCS--L 215 E S N + + ++E++E + + + IG+ITPYN Q +R+ + Sbjct: 47 LEKTSSYNKNQVQKIIELLEQINRILNQRKIRKTIGIITPYNAQKRCLRSEVEKYGFKNF 106 Query: 216 KPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 +++ TVD+FQG + DIII S V++ G + FL D +RLNV Sbjct: 107 DELKIDTVDAFQGEKADIIIYSTVKT--YGNLSFLIDSKRLNV 147 >tr:Q899C1_CLOTE DNA helicase. Clostridium tetani. Length = 1352 Score = 84.9 bits (209), Expect = 1e-16 Identities = 61/282 (21%), Positives = 104/282 (36%), Gaps = 44/282 (15%) Query: 2 AKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 ++ + + +++ + KFDVVI DE++Q+ L L+ KK I+VGD +Q Sbjct: 917 KSIIPIWIMPVDNVVENINVSNSKFDVVICDESSQSNIFS-LCALMRG-KKAIIVGDEQQ 974 Query: 62 LPPT----------------IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 + P +K+ L+ SL++ + + + L +R PEI Sbjct: 975 ISPQAVGVNFEEVKNLANMHLKNIPHREWFDLQTSLYDTALRVFPDRITLKEHFRSVPEI 1034 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 + L Y + R + T + + Sbjct: 1035 IGFSNKLCYFNEI-----KILRHAKKAERLLTPIKTIKVDNGK------------RDEKK 1077 Query: 166 YQNPGEAEFVV-EIVEYLLRSGVPPEDIGVITPY-NGQVELIRNILNSR---CSLKPVEV 220 N EA + +I + +GVI+ Q E I+ +L R + ++ Sbjct: 1078 SVNREEAICIADKIYQCCNDKRYSGMTMGVISLLGESQGEYIQELLKERIGIQEMIKRKI 1137 Query: 221 STVD--SFQGREKDIIILSLVRSNRNGEIGFLR--DERRLNV 258 D SFQG E+DII LS+V N + D +R NV Sbjct: 1138 ICGDAYSFQGDERDIIFLSMVIGNNIKFASLTKEADIKRFNV 1179 >tr:Q97Y82_SULSO Hypothetical protein. Sulfolobus solfataricus. Length = 139 Score = 84.5 bits (208), Expect = 1e-16 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 6/87 (6%) Query: 172 AEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREK 231 AE +V+ +++L+ S + +D+GVI+PY QV + L + VEV+TVD+FQGREK Sbjct: 33 AEEIVKAIKFLI-SKLIGQDVGVISPYRTQVRKLDQELANYKPY--VEVNTVDAFQGREK 89 Query: 232 DIIILSLVRSNRNGEIGFLRDERRLNV 258 D+II S+ +N F+ + RRLNV Sbjct: 90 DVIIFSVTATNGLR---FVTNRRRLNV 113 >tr:Q83JR5_SHIFL Putative superfamily I DNA helicases (Putative superfamily I DNA helicase). Shigella flexneri. Length = 1171 Score = 84.5 bits (208), Expect = 1e-16 Identities = 61/312 (19%), Positives = 105/312 (33%), Gaps = 64/312 (20%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKF-------------DVVIIDEAAQALEAECLIPLL 47 K+ ++ + + K D++I+DEA Q L Sbjct: 653 RMKLTPCVVMTCYMLPGNMQISEHKGQRKFEKSYLYDFADLLIVDEAGQVLPEVAAASFA 712 Query: 48 LAKKKFILVGDHKQLPPT----------------IKSKKAAAKAGLEESLFERLVELGVS 91 LAKK + +GD +Q+PP I S + + + + +LG S Sbjct: 713 LAKKALV-IGDTEQIPPIWSIAPAIDVGNMLAEKILSGSTQEEITEK---YTAIADLGKS 768 Query: 92 VVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARR--LEYDSANPGFFPTPQFIVP-- 147 +V +I + S Y+ + R + ++P Sbjct: 769 AASGSVM-----KIAQFASRYQYDPELARGMYLYEHRRCYDNIIGYCNTLCYHGKLLPKR 823 Query: 148 ----------LSFVDNSGVEEEEPEGYSYQNPGEAEFV---VEIVEYLLRSGVP---PED 191 + ++ G E G S N EAE + + + + + E Sbjct: 824 GREESNLMPAMGYLHIDGKGELASSG-SRYNLLEAETIAVWLAENQQNIEAHYGKSLHEV 882 Query: 192 IGVITPYNGQVELIRNILNSRCSLKP-----VEVSTVDSFQGREKDIIILSLVRSNRNGE 246 +G++TP++ QV I+ +L + + V TV S QG E+ I+I S V S Sbjct: 883 VGIVTPFSAQVSTIKQVLGKQDISTGTNEKSLTVGTVHSLQGAERAIVIFSPVYSKHEDG 942 Query: 247 IGFLRDERRLNV 258 D LNV Sbjct: 943 GFIDSDNSMLNV 954 >tr:Q7QY97_GIALA GLP_387_59737_60978. Giardia lamblia ATCC 50803. Length = 413 Score = 81.8 bits (201), Expect = 1e-15 Identities = 48/171 (28%), Positives = 66/171 (38%), Gaps = 29/171 (16%) Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGV--------SVVRLNVQYRMHPE 104 +L GD+ QLPP AA A L S FERL+ L L QYR Sbjct: 1 MLLAGDNMQLPPV------AATATLGASTFERLIGLTEGKHSPRLCPATTLWAQYRCCRP 54 Query: 105 ICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY 164 + L LFY + P + + LS V + G Sbjct: 55 VADLAGALFYGRR-------------VCTMGTEHPPVVKGLPLLSSVPLGSSFDRTVRG- 100 Query: 165 SYQNPGEAEFVVEIVEYLLRS-GVPPEDIGVITPYNGQVELIRNILNSRCS 214 S +N EA+ +V +V L+ VPP +IG+ITP+ Q + +L S Sbjct: 101 SRENSTEAKAIVRLVTALVLDHKVPPSEIGIITPFRAQSSYLEGLLRRALS 151 Score = 40.6 bits (94), Expect = 0.002 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Query: 213 CSLKPVEVSTVDSFQGREKDIIILSLVRS------NRNGEIGFLRDERRLNV 258 L V +TVDSFQG EK +II+SLV++ + R+NV Sbjct: 209 PKLSTVSAATVDSFQGSEKLVIIVSLVQATDGHFIREPERSEHINFPNRVNV 260 >tr:Q8GT59_CICAR Hypothetical protein 276 (Fragment). Cicer arietinum (Chickpea) (Garbanzo). Length = 296 Score = 81.8 bits (201), Expect = 1e-15 Identities = 34/70 (48%), Positives = 46/70 (65%), Gaps = 8/70 (11%) Query: 194 VITPYNGQVELIRNILNSRCS-----LKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIG 248 ++T YNGQ LIR+++N RC P +V+TVD FQG++ D I+LSLVR+ +G Sbjct: 1 ILTTYNGQKLLIRDVINRRCVPYNFIGAPSKVATVDKFQGQQNDFILLSLVRTRF---VG 57 Query: 249 FLRDERRLNV 258 LRD RRL V Sbjct: 58 HLRDVRRLVV 67 >tr:Q7NCM9_GLOVI Glr2949 protein. Gloeobacter violaceus. Length = 1044 Score = 81.0 bits (199), Expect = 2e-15 Identities = 66/274 (24%), Positives = 103/274 (37%), Gaps = 59/274 (21%) Query: 27 DVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT----------------IKSKK 70 D++++DEA QA LA ++ ++VGD +Q+ P + S++ Sbjct: 622 DLLVVDEAGQASPEVAGASFALA-RQALVVGDEQQIEPVWSIPEAIDCGNLLKHRLLSEQ 680 Query: 71 AAAK----AGLEES----------LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEG 116 G S L + + L+ R +I + L Y G Sbjct: 681 TQKPDFDITGRSASAGSVMRIAQCLSKYQKYPEQRGMFLSEHRRCVRQIINYCNELCYRG 740 Query: 117 NGLVDISSVARRLEYDSANPGFFPT---PQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAE 173 RLE + P P + P+++ D G + S+QN EA+ Sbjct: 741 -----------RLEPKTKEPTKMPVLSGEHHLTPMAYCDIHGKAQRVAG--SWQNEIEAQ 787 Query: 174 FVVE-IVEYLLRSGVPP------EDI-GVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 +V +V RS + E I G++TP+ Q LIR L + L + V TV + Sbjct: 788 AIVAWLVRE--RSALKAHYNQPIEKIVGIVTPFKVQARLIRTALRNVGIL-NLTVGTVHA 844 Query: 226 FQGREKDIIILSLVRSN-RNGEIGFLRDERRLNV 258 QG E+ I+I S V G F LNV Sbjct: 845 LQGAERPIVIFSSVYDALHKGSFFFDAKPNMLNV 878 >tr:Q8IDY9_PLAF7 Hypothetical protein PF13_0187. Plasmodium falciparum (isolate 3D7). Length = 1328 Score = 80.6 bits (198), Expect = 2e-15 Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 10/199 (5%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESL 81 K + IDEA+ E LI L L GD KQL ++ ++K S+ Sbjct: 901 DKKIKHLFIDEASSLSEYNSLICLNLNCDFIYAFGDEKQLTFHSLINEKKRLDINY-LSI 959 Query: 82 FERLVELGV-SVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 FE+L L +QYR+ + S FY L+ ++ ++ Sbjct: 960 FEKLKRYEHIKNHFLLIQYRLIFPMYLFISFYFY-NQKLIASKNIMDNYFKENRKIYDIF 1018 Query: 141 TPQFIVPLSFVDNSG----VEEEEPE-GYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 T VP+ F+D + E + YSY N EA+ ++++ E L+ + +++ V+ Sbjct: 1019 TAYERVPILFIDTYHENFNKQTFEQKVNYSYINHFEAQIILKLAEILMCTT-NQKNVAVL 1077 Query: 196 TPYNGQVELIRNILNSRCS 214 TPY Q I+N+L + Sbjct: 1078 TPYTSQKIYIQNMLENNYR 1096 Score = 60.6 bits (146), Expect = 2e-09 Identities = 23/40 (57%), Positives = 30/40 (75%) Query: 219 EVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 V T+DS+QG E +III+S VRSN +GFL DE+R+NV Sbjct: 1239 NVHTIDSYQGCENNIIIISTVRSNDKNLLGFLNDEKRMNV 1278 >tr:Q8ZK18_SALTY Putative superfamily I DNA helicases. Salmonella typhimurium. Length = 1171 Score = 80.2 bits (197), Expect = 3e-15 Identities = 65/308 (21%), Positives = 106/308 (34%), Gaps = 56/308 (18%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKF-------------DVVIIDEAAQALEAECLIPLL 47 K+ ++ + + K D++I+DEA Q L Sbjct: 653 RMKLTPCVVMTCYMLPGNMQISEHKGQRKFEKSYLYDFADLLIVDEAGQVLPEVAAASFA 712 Query: 48 LAKKKFILVGDHKQLPPT----------------IKSKKAAAKAGLEESLFERLVELGVS 91 LAKK + +GD +Q+PP I S + + + + ELG S Sbjct: 713 LAKKALV-IGDTEQIPPIWSITPAIDIGNMLAEKILSGSTQEEITEK---YTAIAELGKS 768 Query: 92 VVRLNVQ--------YRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGF--FPT 141 +V Y+ PE+ R L+ +I L Y Sbjct: 769 AASGSVMKIAQCASRYQYDPELARGMY-LYEHRRCFDNIIGYCNTLCYHGKLLPKRGCEE 827 Query: 142 PQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV---EYLLRSGVP---PEDIGVI 195 + + ++ G E G S N EAE + + + + + E +G++ Sbjct: 828 SNLMPAMGYLHIDGKGELASSG-SRYNLLEAETIAAWLTDNQQSIEAHYGKSLHEVVGIV 886 Query: 196 TPYNGQVELIRNILNSRCSLKP-----VEVSTVDSFQGREKDIIILSLVRSNRNGEIGFL 250 TP++ QV I+ L+ + + V TV S QG E+ I+I S V S Sbjct: 887 TPFSAQVPTIKQALDKQGISAGTNETSLTVGTVHSLQGAERAIVIFSPVYSKHEDGAFID 946 Query: 251 RDERRLNV 258 D LNV Sbjct: 947 SDNSMLNV 954 >tr:Q7RPP7_PLAYO DNA replication helicase DNA2. Plasmodium yoelii yoelii. Length = 521 Score = 79.9 bits (196), Expect = 3e-15 Identities = 51/207 (24%), Positives = 77/207 (37%), Gaps = 21/207 (10%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESL 81 K +IIDEA+ E LI L L GD KQL +I S+K + Sbjct: 105 DKKIKHLIIDEASSLSEYNSLICLNLNVSYIYAFGDDKQLTFHSIISEKKRNEINYFSIF 164 Query: 82 FERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN-------GLVDISSVARRLEYDSA 134 + + L QYR+ I S FY I S + Sbjct: 165 EKLKQYKNIKCHYLFTQYRLIFPIYLFISFYFYNNKLIASKKIVDNFIKSNKLSDFLEIF 224 Query: 135 NPGFFP-------TPQFIVPLSFVDN-----SGVEEEEPEGYSYQNPGEAEFVVEIVEYL 182 P QF +P+ F+D + E+ SY N EA ++++V+ + Sbjct: 225 KNDKIPKKLQNNLYSQFSIPILFIDTYTENLNHEIFEQQINQSYINKFEAIIILKLVQIM 284 Query: 183 LRSGVPPEDIGVITPYNGQVELIRNIL 209 S + P ++ ++TPY Q I+ IL Sbjct: 285 SLSKIKP-NLAILTPYISQKNYIQQIL 310 Score = 59.4 bits (143), Expect = 5e-09 Identities = 25/40 (62%), Positives = 31/40 (77%) Query: 219 EVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 V T+DS+QG E DIII+S VRSN N +GFL DE+R+NV Sbjct: 431 NVYTIDSYQGCESDIIIVSTVRSNENYSLGFLNDEKRMNV 470 >tr:Q6KHE5_MYCMO Putative ATP-binding helicase protein. Mycoplasma mobile. Length = 1057 Score = 79.1 bits (194), Expect = 6e-15 Identities = 57/234 (24%), Positives = 95/234 (40%), Gaps = 43/234 (18%) Query: 22 EKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESL 81 +K +FD I+DE++Q + L L LAK K IL GD +Q+ PT A G +E+ Sbjct: 655 QKEEFDYAILDESSQIFLEKGLPVLYLAKIK-ILAGDDQQMQPT--RWFAQKFEGEDENF 711 Query: 82 FERLVEL-------GVSVVRLNVQYRMH-PEICRLPSNLFYEGNGLVDISSVARRLEYDS 133 + L G V L+ YR + + S FY+G V Sbjct: 712 LSGIDSLLDYATTKGTYNVLLDKNYRSNYAALMTFSSKHFYKGELDVL------------ 759 Query: 134 ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG 193 + + +P+ V+ +G E + +N EAE V+EI L+ E I Sbjct: 760 ----DINSEKAFLPIEVVNINGKWE------NSENHAEAEAVLEITAKELK---KHEKII 806 Query: 194 VITPYNGQVELIRNI-------LNSRCSLKPVEVSTVDSFQGREKDIIILSLVR 240 ++ + Q L+ L + + + +++ QG E D++I S+ Sbjct: 807 ILCFNSSQQNLLEKTIFESMPDLEEAIQNEKLLLRNIENIQGDEADLVIASVSY 860 >tr:Q87BL9_XYLFT DNA helicase. Xylella fastidiosa (strain Temecula1 / ATCC 700964). Length = 1190 Score = 78.7 bits (193), Expect = 8e-15 Identities = 69/277 (24%), Positives = 103/277 (37%), Gaps = 53/277 (19%) Query: 27 DVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT--------IKSKKAAAKAGLE 78 D++I+DEA Q L L K+ +++GD Q+ P I + AA G E Sbjct: 699 DLLIVDEAGQVLPEVAGASFALG-KQALVIGDQLQIEPIWSIPESIDIGNLHAAELLGKE 757 Query: 79 ESLFERLVELGVSV------------------------VRLNVQYRMHPEICRLPSNLFY 114 E +ERL + G S + L +R EI + L Y Sbjct: 758 EDAYERLCQSGRSAASGSVMQIAQRLSRYHYDPEMARGMFLYEHHRCFDEIVSYCNALCY 817 Query: 115 EGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEF 174 +G I ++ G T + L ++ G ++ G S N EA+ Sbjct: 818 QGK---LIPKRGPKVAALKNAAGK-ETGDGLPALGYLHVDG-LCQKSSGGSRHNLYEAQT 872 Query: 175 VVEIVEYLLRS-----GVPPEDI-GVITPYNGQVELIRNILNSRCSLKPVE-----VSTV 223 + + S G P I G++TP+ QV I E V TV Sbjct: 873 IAAWLAEHRESLQAQYGKPLHCIVGIVTPFGAQVRAISQACRDVGIEVGHEKDGITVGTV 932 Query: 224 DSFQGREKDIIILSLVRSNRNGEIGFLRDER--RLNV 258 + QG E+ ++I S V S GF+ D+R LNV Sbjct: 933 HALQGAERPVVIFSAVYSKHADG-GFI-DQRTSMLNV 967 >tr:Q886X0_PSESM Hypothetical protein. Pseudomonas syringae (pv. tomato). Length = 758 Score = 78.3 bits (192), Expect = 1e-14 Identities = 63/272 (23%), Positives = 89/272 (32%), Gaps = 51/272 (18%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 K + + S SL K D VIIDEA+Q ++ L K I+VGD KQL Sbjct: 311 KRYPVIGSSTHSIVNSLG-GKAVLDYVIIDEASQQDIVPGVLALS-CAKNLIIVGDRKQL 368 Query: 63 PPTIKSKKAAAKAG-LEESLFERLVELGV------SVVRLNVQYRMHPEICRLPSNLFYE 115 + A A + + L + L YR HP I + + FY+ Sbjct: 369 AHIPEKLGLEAPAPWYDCETYSLLDSCVGVFGDSIPMTLLKEHYRCHPRIIQFCNQQFYD 428 Query: 116 GNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFV 175 + E +G +N + Sbjct: 429 N---QLVPMTQDAGEQSLTL----------------------LVTAKGNHTRNNSNLREL 463 Query: 176 VEIVEYLLRSGVPPEDI-------GVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQG 228 ++ L SG E I G I P+ Q L+ C TV FQG Sbjct: 464 DSLLAVLDGSG---ESIWEGEDGRGFIAPFKNQ-----ATLSGSCLPADFINDTVHKFQG 515 Query: 229 REKDIIILSLV--RSNRNGEIGFLRDERRLNV 258 RE D I+ S V + + F+ D R +NV Sbjct: 516 RECDEIVFSTVLDKHKSPERLSFVDDARMVNV 547 >tr:Q82CU7_STRAW Hypothetical protein. Streptomyces avermitilis. Length = 439 Score = 78.3 bits (192), Expect = 1e-14 Identities = 61/253 (24%), Positives = 87/253 (34%), Gaps = 27/253 (10%) Query: 27 DVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT--IKSKK-AAAKAGLEESLFE 83 I+DEA Q L L + + + VGD QL P + S++ A S Sbjct: 149 RHAIVDEAYQMRSDALLAVAGLFE-RALFVGDPGQLDPFAIVGSEQWAGLSYDPSASAVT 207 Query: 84 RLVELGV--SVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS-SVARRLEYDSANPGFFP 140 L+ RL V +R+ L S FY + RRL + A+ G P Sbjct: 208 TLLAHNPELPQHRLPVSWRLPASAAPLVSAAFYPYTPFRSGTDHGDRRLAFGVASDGSGP 267 Query: 141 TPQFIVPLSFVDNSGVEEEEP--EGYSYQNPGEAEFVVEIVEYLLRSG------------ 186 + SG E +P V ++V LL G Sbjct: 268 D----RVIDEAAESGWGLLELPARHTPRTDPEAVRAVAQVVRRLLDRGGAAVSERSARPV 323 Query: 187 -VPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNG 245 + P+ I V T + Q +R L V V T + QGRE D+ ++ S R Sbjct: 324 PLTPDRIAVGTAHRDQAAAVRTALADLGVA-DVTVDTANRLQGREFDVTVILHPLSGRPD 382 Query: 246 EIGFLRDERRLNV 258 F + RL V Sbjct: 383 ATAFHLETGRLCV 395 >tr:Q7MS43_WOLSU Hypothetical protein. Wolinella succinogenes. Length = 558 Score = 77.9 bits (191), Expect = 1e-14 Identities = 73/289 (25%), Positives = 108/289 (37%), Gaps = 67/289 (23%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 EA V+AMT + ++L L K + +DEAA I L A+ ++GDHK Sbjct: 262 EALVLAMTVDNFIKRFETLPLSGKK--HLFLDEAA-FTPLIKAITLCAAQAPLTMLGDHK 318 Query: 61 QLPPT-----------IKSKKAAAKAGL--------EESLFERLVELGVS------VVRL 95 QLPP ++ KA + L E++FE L + +V L Sbjct: 319 QLPPVCEAPEREMRGENRTLKAWHYSALHLESYMRQGEAIFEVSDPLLLPPLVTTQMVCL 378 Query: 96 NVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSG 155 + +R + RL Y+ A Sbjct: 379 SRSHRYGENLTRLLDEHIYQMGLTGLEKKTELYYIDSGAG-------------------- 418 Query: 156 VEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSL 215 E + +GYS +P EA+ + +V LLRS D G+ITP+ Q + IL L Sbjct: 419 -ERVDSKGYS--SPMEAKAMRGLVGELLRS---EADFGIITPFVLQK---KAILEHHPEL 469 Query: 216 KPVE-VSTVDSFQGREKDIIILSLVR-----SNRNGEIGFLRDERRLNV 258 + E V T+ QG+E + +ILS V +N LNV Sbjct: 470 RGKERVMTIHGSQGQEFETVILSPVTLHYHLTNSKNPAAL----HALNV 514 >tr:Q97ES1_CLOAB Superfamily I DNA helicase. Clostridium acetobutylicum. Length = 1351 Score = 77.2 bits (189), Expect = 2e-14 Identities = 64/280 (22%), Positives = 105/280 (37%), Gaps = 46/280 (16%) Query: 5 VAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK-KKFILVGDHKQLP 63 + + +++ L FDVVI DE+ Q+ + L + K+ ++VGD KQ+ Sbjct: 936 IPVWIMPLNKVIENIGLNSNLFDVVIFDESNQS---DIFGISALFRGKRAVIVGDDKQIS 992 Query: 64 P------------TIKSK----KAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICR 107 P I + L+ SL+ + + + L +R PEI Sbjct: 993 PQAVGIEEGSVDELINRHLKGIPHSQWFDLQTSLYNTALRVFPDRLLLREHFRCVPEIIG 1052 Query: 108 LPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQ 167 + + Y I + + + P + DN Sbjct: 1053 FSNMVSYSN---EIIPLRYPKAKEAFSEPVKVVKVKDG----LKDNIRQ----------T 1095 Query: 168 NPGEAEFVV-EIVEYLLRSGVPPEDIGVITPY-NGQVELIRNILNSR-CSLKPVE----V 220 N EA+ +V I+E + +GVI+ Q ELI ++L + + ++ Sbjct: 1096 NENEAKAIVNSIIECCSDTKYDNMTMGVISLLGEQQSELIESMLRHKLGEKEMLKRKILC 1155 Query: 221 STVDSFQGREKDIIILSLVRSNRNGEIGFLR--DERRLNV 258 SFQG E+DI+ LSLV SN + R D RR NV Sbjct: 1156 GDAFSFQGDERDIMFLSLVVSNGSKISALTREADLRRFNV 1195 >tr:Q98R88_MYCPU ATP-BINDING PROTEIN. Mycoplasma pulmonis. Length = 1027 Score = 76.4 bits (187), Expect = 4e-14 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 39/230 (16%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT----IKSKKAAAKAGLE 78 K +FD ++DE++Q + L L LAK+K IL GD+KQ+ PT +S + ++ Sbjct: 650 KDEFDYALLDESSQIFIEKGLPVLYLAKRK-ILAGDNKQMKPTRWFSTRSNDDSIFGSVD 708 Query: 79 ESLFERLVELGVSVVRLNVQYRMH-PEICRLPSNLFYEGNGLVDISSVARRLEYDSANPG 137 SL + + +GV + L+ YR + + S FY+ + V D N Sbjct: 709 -SLLDYSISMGVYTILLDKNYRSNFASLMSFSSRHFYDSSLDV----------VDRFNNK 757 Query: 138 FFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITP 197 + I +N+ N EA V+++ + + + I +++ Sbjct: 758 ITKPLEVIEINGKWENNA------------NIEEAAVVLDLTQKNID---KYKKIIILSF 802 Query: 198 YNGQVELIRNI-------LNSRCSLKPVEVSTVDSFQGREKDIIILSLVR 240 + Q EL+ L + + + + + +++ QG E DIII +L Sbjct: 803 NSKQQELLEKEIFTNHPNLEEKINNESLLLRNIENIQGDEADIIIATLAY 852 >tr:Q7V8N5_PROMM Hypothetical protein (EC 2.7.7.-). Prochlorococcus marinus (strain MIT 9313). Length = 1330 Score = 76.4 bits (187), Expect = 4e-14 Identities = 67/302 (22%), Positives = 104/302 (34%), Gaps = 65/302 (21%) Query: 2 AKVVAMTCTGAASKRKSLALEKF-KFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 V + L K FDVVI DEA+Q + E + +L K+ I+ GD K Sbjct: 790 KSVKPCWAMSPLVVSELLPANKEPFFDVVIFDEASQIVPFEAITSILRG-KQTIVAGDSK 848 Query: 61 QLPPTI--KSKKAA---------------AKAGLEESLFERLVELGVSVV---RLNVQYR 100 QL PT K++ ESL + + + VV L YR Sbjct: 849 QLSPTTTSFFSKSSDDDHRGDDLDDEDSFDAVDETESLLDAVKSVLPPVVGVRTLQWHYR 908 Query: 101 MHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEE 160 E SN + + + P+ P + G E +E Sbjct: 909 SEDERLIAFSN---------------KHPDLYGSRLVTAPSTSQEAPFDYHHIEG-ELKE 952 Query: 161 PEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSR-------- 212 G S + E + VE+V L+ P + VI + I N + + Sbjct: 953 VTGSSPK--AEVKKTVELVINHLKIN-PHLSLAVIAFGSEHARKIENEFHKQVGATPSLP 1009 Query: 213 --CSLKPVE---VSTVDSFQGREKDIIILSLVRS--------NRNGEIGFLRD---ERRL 256 KP E + +++ QG E+D++ ++ N G I ++ RRL Sbjct: 1010 LFPEGKPEEKLVIRHLEAIQGDERDVVFIATGYGPKELGKVQNSFGPINIDKNFFGLRRL 1069 Query: 257 NV 258 NV Sbjct: 1070 NV 1071 >tr:Q7S8B9_NEUCR Hypothetical protein. Neurospora crassa. Length = 1190 Score = 76.4 bits (187), Expect = 5e-14 Identities = 65/266 (24%), Positives = 97/266 (36%), Gaps = 47/266 (17%) Query: 28 VVIIDEAAQALEAE-------CLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 ++ IDEA +A+ L P IL GD KQLPP + + G + Sbjct: 792 IIAIDEAGCMSKADLCSIWGNTLRP-------IILAGDVKQLPPLMIELETKDLEGNYAN 844 Query: 81 LFER---------LVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRL-- 129 F L G+ RL Q RM + L + LFY + V Sbjct: 845 RFGTCGRISALAWLQAAGLPTFRLLRQLRMCKGMFDLANELFYSDYKNMAYGDVCDPAHP 904 Query: 130 ----------EYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 +P P+P+ + F + G S N + + +E++ Sbjct: 905 SHTVGRAFEQYLLGRDPTLTPSPEGYLLPVFWHMPKT-RVDVVGTSKLNRMQVKGALELL 963 Query: 180 EYLLRS--GVPPEDIGVITPYNGQVELIRNILNS---RCSLKPVEVSTVDSFQGREKDII 234 +++ P+D VI+ + V+ +L S P T DSFQGRE I Sbjct: 964 NDFVKNFPCASPQDFVVISAHKPNVDYGNRLLKSGLPHLRGMPPF-QTADSFQGREGSI- 1021 Query: 235 ILSLVRSNRNGEI--GFLRDERRLNV 258 S+ + I GF+ DE RLNV Sbjct: 1022 --SVAITGTRSGIIPGFVADENRLNV 1045 >tr:Q5JLH1_ORYSA Helicase-like protein. Oryza sativa (japonica cultivar-group). Length = 374 Score = 75.6 bits (185), Expect = 7e-14 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 4/115 (3%) Query: 26 FDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERL 85 +++I+D+AA+ E + +IPL L +++GD L P K A S F+RL Sbjct: 4 INLLIVDDAAKINECDLIIPLRLLVTHILMLGDDFNLQP----SKVRENARFTMSPFKRL 59 Query: 86 VELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 + LG L QY +HP I + + FYEG + +S F Sbjct: 60 LNLGFRKHMLTEQYAIHPSIWQFRNEKFYEGRITNGATVFLLNTTKNSKVLNFPI 114 >tr:P94840_HELPY Cag-omega. Helicobacter pylori (Campylobacter pylori). Length = 127 Score = 75.6 bits (185), Expect = 8e-14 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 7/89 (7%) Query: 175 VVEIVEYLLR--SGVPPED-IGVITPYNGQVELIRNILNSRCS--LKPVEVSTVDSFQGR 229 ++E++E + R + IG+ITPYN Q +R+ + +++ TVD+FQG Sbjct: 4 IIELLEQIDRALNQRKIRKTIGIITPYNAQKRRLRSEVEKYGFKNFDELKIDTVDAFQGE 63 Query: 230 EKDIIILSLVRSNRNGEIGFLRDERRLNV 258 E DIII S V++ G + FL D +RLNV Sbjct: 64 EADIIIYSTVKT--CGNLSFLLDSKRLNV 90 >tr:Q54P97_DICDI Hypothetical protein. Dictyostelium discoideum (Slime mold). Length = 1679 Score = 74.9 bits (183), Expect = 1e-13 Identities = 69/314 (21%), Positives = 112/314 (35%), Gaps = 74/314 (23%) Query: 10 TGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK---KFILVGDHKQLPPTI 66 A+ L+ FD++IIDEA+Q IP K K I+ GD+KQL P + Sbjct: 1274 CVGATSWSLSTLDYNDFDLLIIDEASQLSSFIGSIPFQRLNKETGKIIICGDNKQLGPVL 1333 Query: 67 KSKKAAAKA------------------GLEESLF----ERLVELGVSVVRLNV--QYRMH 102 K L +S+F L+ + L++ +RM+ Sbjct: 1334 NDSYPNRKELNCNQNQNQNQNNNNDNPKLHKSVFSCIKSHLIANNIKNPYLSLYENFRMN 1393 Query: 103 PEICRLPSNLFYEGNGL--VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEE 160 ++C+ NL+ + + S+ F LS + + Sbjct: 1394 NQLCKFSQNLYGKLYQCFKENQESITPLSFDKDDLNNQLIESIFNNDLSCHTILLDDSQF 1453 Query: 161 PEGYSYQNPGEAEFVVEIVEYLLRS------------GVPPEDI------------GVIT 196 + EA V +I ++L + + E I GVIT Sbjct: 1454 GDK-----ILEANIVKQIYKFLRKEYSKRLINNNNNEEINDEQIKEDKFWRKDLILGVIT 1508 Query: 197 PYNGQVELI--------RNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIG 248 P + Q I N LN ++KP+ V+TV+ QG+E + +IL N ++ Sbjct: 1509 PLHIQRNTIIPMINRVQINELNLEATVKPI-VNTVEVTQGKEFENVIL---CYNGFDDLN 1564 Query: 249 FLR----DERRLNV 258 + D RLNV Sbjct: 1565 RISEFSFDLNRLNV 1578 >tr:Q5NPP1_ZYMMO Hypothetical protein. Zymomonas mobilis. Length = 1191 Score = 74.1 bits (181), Expect = 2e-13 Identities = 53/284 (18%), Positives = 96/284 (33%), Gaps = 56/284 (19%) Query: 3 KVVAMTCTGAASKRKSL-ALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 VV + T AS + L L ++IDEA QA+ ++ A K+ ++VGD Q Sbjct: 871 MVVPVISTTFASTGRMLGNLPPNSIGWLLIDEAGQAVPQAAAGAIMRA-KRSVVVGDPLQ 929 Query: 62 LPPTIKS--------------------------KKAAAKAGLEESLFERLVELGVSVVRL 95 +PP + + A +A +++F + + L Sbjct: 930 IPPVVSLPEQLTSKICQFFKVDKSIWSAPEASAQSLADQASNFQAVFNSDQDGRRVGIPL 989 Query: 96 NVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSG 155 V R + + + + Y+ V G + S Sbjct: 990 LVHRRCQNPMFEISNRIAYDNQM------VHAAGNPSIGAIGK-----------VIGRSR 1032 Query: 156 VEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYN----------GQV-EL 204 + + E + E + V++ +E L + + D+ +ITP+ Q L Sbjct: 1033 WLDVKGEADTKWCEAEGQVVIDFLEKLAAASITSPDLFIITPFRIVSSELKLRLSQKSSL 1092 Query: 205 IRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIG 248 + + + TV +FQG+E D +IL L N Sbjct: 1093 LERLHIKNSEWIRSHIGTVHTFQGKEADSVILLLGAPANNQNGA 1136 >tr:Q75X95_HELPY Cag pathogenicity island protein. Helicobacter pylori (Campylobacter pylori). Length = 127 Score = 73.7 bits (180), Expect = 2e-13 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 192 IGVITPYNGQVELIRNILNSR--CSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGF 249 IG+ITPYN Q +R+ + + +++ TVD+FQG E DIII S V++ G + F Sbjct: 24 IGIITPYNAQKRRLRSEVEKCDFKNFDELKIDTVDAFQGEEADIIIYSTVKT--YGNLSF 81 Query: 250 LRDERRLNV 258 L D +RLNV Sbjct: 82 LLDSKRLNV 90 >tr:Q7QVD2_GIALA GLP_542_32520_28105. Giardia lamblia ATCC 50803. Length = 1471 Score = 72.9 bits (178), Expect = 4e-13 Identities = 68/304 (22%), Positives = 105/304 (34%), Gaps = 85/304 (27%) Query: 22 EKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESL 81 E +I++EAA+ E E L+ K IL+GD QLPP I+ A+ L+ S+ Sbjct: 1112 EGGHHRYLIVEEAARLSEHEFASFLVAPFDKIILLGDILQLPPLIQDLTIASSGALDWSV 1171 Query: 82 FERLV---ELGVSVVRLNVQYRMHPEICRLPSNLF------YEG--NGLVDISSVARRLE 130 F R+ + V +V L Q R PEI L +L+ Y GL DI V Sbjct: 1172 FHRICYSPRVSVPIVALEEQARSVPEIADLYRSLYESSLPRYCSIKGGLRDIPGVKFDSF 1231 Query: 131 YDSANPGFFP------------------TPQFIVPLSF------VDNSGVEEEEPEGYSY 166 D A F T F + E+ + Sbjct: 1232 VDQAILERFHGRCFCIPSKSISTYANLITETDRALTDFCQQMKEYQIIKKQPEDAKSKKK 1291 Query: 167 Q---------NPGEAEFVVEI-------VEYLLRSG---------------VPPEDIGVI 195 + N E + + + V ++ SG I ++ Sbjct: 1292 RGGDIRLAETNRDEIKLISYLLYSTLVQVTNMIFSGSHLDKLAYDSREQEYYLHFSIAIL 1351 Query: 196 TPYNGQVELIR-NILNS--RCSLKPVE----------------VSTVDSFQGREKDIIIL 236 + Y+ Q L++ + S K + VST D+FQG E D++ L Sbjct: 1352 SLYSAQAALLKSDRFISDVTSVFKDLRLPAGNDRRVRLSVDISVSTSDAFQGLEADVVFL 1411 Query: 237 SLVR 240 S+V+ Sbjct: 1412 SMVK 1415 >tr:Q5E034_VIBF1 Superfamily I DNA helicases and helicase subunits. Vibrio fischeri (strain ATCC 700601 / ES114). Length = 1354 Score = 72.9 bits (178), Expect = 5e-13 Identities = 63/294 (21%), Positives = 104/294 (35%), Gaps = 91/294 (30%) Query: 27 DVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESL----- 81 D++IIDEA QA L L LAKK I VGD Q+PP I+ + GL ++L Sbjct: 680 DLLIIDEAGQADIRSTLPLLALAKKT-IAVGDIAQIPPVIQDVTPIQEQGLFQTLGMGVN 738 Query: 82 --------------------------FERLVEL---GVSVVRLNVQYRMHPEICRLPSNL 112 R + + L YR + + + L Sbjct: 739 EAHTKRCFVHAFKNQLLPSISGSILHVLRQISCVNHQGQGMSLRGHYRCQEVLSQFCNEL 798 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 Y+ + + P F PL++V ++ E + G S++N EA Sbjct: 799 VYDNSIFII--------------PPLFKERGPFRPLTWVSSAS--ETQKVGTSHKNEKEA 842 Query: 173 EFVVE-IVEYL--LRSGVP---------PEDIGVITPYNGQVELIRN------------- 207 +VE +++ + P+ +G+I+PY Q + Sbjct: 843 RTIVEWLIDQWPRIHDHYNKPSKPKKRLPDLVGIISPYKKQSLVFIGHDEDDSGSKGKTQ 902 Query: 208 -----ILNSRCSLKPVEVS----------TVDSFQGREKDIIILSLVRSNRNGE 246 +L + E++ TV++ QG EK II+ S +S + G Sbjct: 903 GMLHSLLIKKFKGTEYEITVDDVDKMKIGTVNALQGAEKPIILFSGTKSIKFGG 956 >tr:Q7RBF5_PLAYO Hypothetical protein (Fragment). Plasmodium yoelii yoelii. Length = 976 Score = 72.5 bits (177), Expect = 5e-13 Identities = 31/60 (51%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 24 FKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFE 83 FD +IIDEA+QA+E + LIPL + KK ILVGD KQL T+ S A SLFE Sbjct: 918 NHFDAIIIDEASQAIELDILIPLSFSCKKIILVGDPKQLSATVFSLFAKKH-NYSRSLFE 976 >tr:Q88Y71_LACPL Hypothetical protein lp_0918. Lactobacillus plantarum. Length = 987 Score = 71.4 bits (174), Expect = 1e-12 Identities = 51/245 (20%), Positives = 83/245 (33%), Gaps = 21/245 (8%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 M+ T A+ R + D V IDE+ QA A + A K + +GD Q+ P Sbjct: 690 VMSTTLASVGRMFANFGENTIDNVYIDESGQATPASAVGIAWRA-KHLVAIGDPAQIEPV 748 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVV-RLNVQ---YRMHPEICRLPSNLFYEGNGLVD 121 + + +A + + L + V +L Q Y MH SN + G L Sbjct: 749 VTTNEATLRTIARDFKVSEQYLLPTTSVQQLADQGSIYGMHR------SNHTWVGIPLWV 802 Query: 122 ISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEY 181 + + + P +G + E V + Sbjct: 803 HRRCDSPMFEIANEISYENKMVQGKPTKLSQVERSRWINSKGKATNQQFVPENVTALARI 862 Query: 182 L---LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVE-------VSTVDSFQGREK 231 + G + + VI+P+ V I N L + + V TV FQG+E Sbjct: 863 MKKRRDEGKSLDQMFVISPFRAVVNGITNKLPKEFNDGAISKKWLQEHVGTVHRFQGKEA 922 Query: 232 DIIIL 236 D++ L Sbjct: 923 DVVFL 927 >tr:Q6Q1S3_9CORO Replicase polyprotein 1ab. Human coronavirus NL63. Length = 6729 Score = 71.4 bits (174), Expect = 1e-12 Identities = 55/243 (22%), Positives = 86/243 (35%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP--TIKSKKAAAKA 75 AL + D+V++DE + +I L+ K + VGD +QLP + +K Sbjct: 5332 NALPECNADIVVVDEVSMCTNYDLSVINQRLSYKHIVYVGDPQQLPAPRVMITKGVMEPV 5391 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 + +R+ +G V L+ YR EI S L YE + Sbjct: 5392 DYNV-VTQRMCAIG-PDVFLHKCYRCPAEIVNTVSELVYENKFV---------------- 5433 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 P + + S N + +EIV+ L I Sbjct: 5434 ------PVKPASKQCFKVFFKGNVQVDNGSSINRKQ----LEIVKLFLVKNPSWSKAVFI 5483 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q N + SR +++ TVDS QG E D +I + + + R Sbjct: 5484 SPYNSQ-----NYVASRFL--GLQIQTVDSSQGSEYDYVIY-----AQTSDTAHACNVNR 5531 Query: 256 LNV 258 NV Sbjct: 5532 FNV 5534 >tr:Q6R1L9_9CORO ORF 1ab. Human group 1 coronavirus associated with pneumonia. Length = 6724 Score = 71.4 bits (174), Expect = 1e-12 Identities = 55/243 (22%), Positives = 86/243 (35%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP--TIKSKKAAAKA 75 AL + D+V++DE + +I L+ K + VGD +QLP + +K Sbjct: 5327 NALPECNADIVVVDEVSMCTNYDLSVINQRLSYKHIVYVGDPQQLPAPRVMITKGVMEPV 5386 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 + +R+ +G V L+ YR EI S L YE + Sbjct: 5387 DYNV-VTQRMCAIG-PDVFLHKCYRCPAEIVNTVSELVYENKFV---------------- 5428 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 P + + S N + +EIV+ L I Sbjct: 5429 ------PVKPASKQCFKIFFKGNVQVDNGSSINRKQ----LEIVKLFLVKNPSWSKAVFI 5478 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q N + SR +++ TVDS QG E D +I + + + R Sbjct: 5479 SPYNSQ-----NYVASRFL--GLQIQTVDSSQGSEYDYVIY-----AQTSDTAHACNVNR 5526 Query: 256 LNV 258 NV Sbjct: 5527 FNV 5529 >tr:Q6TNG2_CVHOC Replicase polyprotein. Human coronavirus (strain OC43) (HCoV-OC43). Length = 7095 Score = 71.0 bits (173), Expect = 2e-12 Identities = 52/244 (21%), Positives = 86/244 (35%), Gaps = 43/244 (17%) Query: 18 SLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAK 74 AL + D+V++DE + E + + A K ++ +GD QLP P + K + Sbjct: 5656 INALPEMVTDIVVVDEVSMLTNYELSVINARIRA-KHYVYIGDPAQLPAPRVLLSKGTLE 5714 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 + +L+ + L YR EI S L YE + S+ Sbjct: 5715 PKYFNT-VTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENK--------LKAKNESSS 5765 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGV 194 E S N + + I ++L + + + + Sbjct: 5766 LC--------------FKVYYKGVTTHESSSAVNM---QQIYLINKFLKANPLWHKAV-F 5807 Query: 195 ITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDER 254 I+PYN Q + +L ++ TVDS QG E D +I S + E + Sbjct: 5808 ISPYNSQNFAAKRVL-------GLQTQTVDSAQGSEYDYVIYS-----QTAETAHSVNVN 5855 Query: 255 RLNV 258 R NV Sbjct: 5856 RFNV 5859 >tr:Q696Q1_CVHOC Orf1ab. Human coronavirus (strain OC43) (HCoV-OC43). Length = 7095 Score = 71.0 bits (173), Expect = 2e-12 Identities = 52/244 (21%), Positives = 86/244 (35%), Gaps = 43/244 (17%) Query: 18 SLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAK 74 AL + D+V++DE + E + + A K ++ +GD QLP P + K + Sbjct: 5656 INALPEMVTDIVVVDEVSMLTNYELSVINARIRA-KHYVYIGDPAQLPAPRVLLSKGTLE 5714 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 + +L+ + L YR EI S L YE + S+ Sbjct: 5715 PKYFNT-VTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYENK--------LKAKNESSS 5765 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGV 194 E S N + + I ++L + + + + Sbjct: 5766 LC--------------FKVYYKGVTTHESSSAVNM---QQIYLINKFLKANPLWHKAV-F 5807 Query: 195 ITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDER 254 I+PYN Q + +L ++ TVDS QG E D +I S + E + Sbjct: 5808 ISPYNSQNFAAKRVL-------GLQTQTVDSAQGSEYDYVIYS-----QTAETAHSVNVN 5855 Query: 255 RLNV 258 R NV Sbjct: 5856 RFNV 5859 >tr:Q52PA4_9CORO Polyprotein ab. Feline infectious peritonitis virus (FIPV). Length = 6709 Score = 70.6 bits (172), Expect = 2e-12 Identities = 56/243 (23%), Positives = 87/243 (35%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP--TIKSKKAAAKA 75 AL + D+V++DE + +I L+ K + VGD +QLP T+ +K Sbjct: 5314 NALPEASCDIVVVDEVSMCTNYDLSVINSRLSYKHIVYVGDPQQLPAPRTLINKGVLQPQ 5373 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 + +R+ LG V L+ YR EI + S L YE Sbjct: 5374 DYNV-VTQRVCTLG-PDVFLHKCYRCPAEIVKTVSALVYEN------------------- 5412 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 F F + + S N +E+V+ L I Sbjct: 5413 --KFVPVNPESKQCFKMFVKGQVQIESNSSINNKQ-----LEVVKAFLAHNPKWRKAVFI 5465 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + R +L ++ TVDS QG E D +I +++ + R Sbjct: 5466 SPYNSQNYVARRLL-------GLQTQTVDSAQGSEYDYVIY--TQTSDTQ---HATNVNR 5513 Query: 256 LNV 258 NV Sbjct: 5514 FNV 5516 >tr:Q6MSV9_MYCMS Hypothetical protein. Mycoplasma mycoides (subsp. mycoides SC). Length = 713 Score = 70.2 bits (171), Expect = 3e-12 Identities = 64/290 (22%), Positives = 106/290 (36%), Gaps = 57/290 (19%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK 60 K M S +KFD VI DEA+Q + L A K+ I+VGD + Sbjct: 73 NIKPCLMLSPLTVSYLFKD--IDYKFDTVIFDEASQIKPETAISSLFRA-KQVIIVGDKE 129 Query: 61 QLPPTIK-----SKKAAAKAGLEE---SLFERLVELGVSV---VRLNVQYRMHPEICRLP 109 Q+PPT + + K +EE S +E L+ L +RL YR E Sbjct: 130 QMPPTNFFNTLENDEVVQKTNIEEDISSGYESLLSLAEGNLDSIRLKWHYRSKFEDLIYI 189 Query: 110 SNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNP 169 SN F + + +S P+ L F+ ++ ++ + Y Sbjct: 190 SNKFIYNDLITFPNS---------------KLPKDYEGLRFIYSNPNQQTD----EYHTI 230 Query: 170 GEAEFVVEIVEYLLRSGVPPEDIGVITPYN----GQVELIRNILNSRCSL---------K 216 +A ++ + ++ G++ E + L L + Sbjct: 231 LKALQTLKQIILTYQNKY---SFGIVVFNTEIEAKANEYLDKFLEQNPDLLPFFNEDVKE 287 Query: 217 PVEVSTVDSFQGREKDIIIL----SLVRSNR----NGEIGFLRDERRLNV 258 P + +++ QG E+D II + ++NR GEI +RLNV Sbjct: 288 PFFIKNIETVQGDERDFIIFIINGKINKNNRVGVVFGEINKQNGYKRLNV 337 >tr:Q66WN6_9CORO Replicative polyprotein 1ab. Murine hepatitis virus. Length = 7178 Score = 69.5 bits (169), Expect = 5e-12 Identities = 50/244 (20%), Positives = 86/244 (35%), Gaps = 43/244 (17%) Query: 18 SLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAK 74 AL + D++++DE + E + + A K ++ +GD QLP P + K + Sbjct: 5743 INALPELVTDIIVVDEVSMLTNYELSVINSRVRA-KHYVYIGDPAQLPAPRVLLNKGTLE 5801 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 S +L+ + L YR EI S L Y + +S+ Sbjct: 5802 PRYFNS-VTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYNNK--------LKAKNDNSS 5852 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGV 194 + E S N + + ++ L++ + Sbjct: 5853 MC--------------FKVYYKGQTTHESSSAVNMQQ----IHLISKFLKANPSWSNAVF 5894 Query: 195 ITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDER 254 I+PYN Q + + +L ++ TVDS QG E D +I S + E + Sbjct: 5895 ISPYNSQNYVAKRVL-------GLQTQTVDSAQGSEYDFVIYS-----QTAETAHSVNVN 5942 Query: 255 RLNV 258 R NV Sbjct: 5943 RFNV 5946 >tr:Q5MQD2_9CORO Orf1ab polyprotein. Human coronavirus HKU1. Length = 7182 Score = 69.5 bits (169), Expect = 5e-12 Identities = 55/244 (22%), Positives = 91/244 (37%), Gaps = 43/244 (17%) Query: 18 SLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAK 74 AL + D+V++DE + E + + A K ++ +GD QLP P + K + + Sbjct: 5744 INALPELVTDIVVVDEVSMLTNYELSVINARIKA-KHYVYIGDPAQLPAPRVLLSKGSLE 5802 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 S+ + + LG + L YR EI S L Y+ + +S+ Sbjct: 5803 PRHFNSITKIMCCLG-PDIFLGNCYRCPKEIVETVSALVYDNK--------LKAKNDNSS 5853 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGV 194 + E S N + + I ++L + V + Sbjct: 5854 LC--------------FKVYFKGQTTHESSSAVNI---QQIYLISKFLKANPVWNSAV-F 5895 Query: 195 ITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDER 254 I+PYN Q + + +L V+ TVDS QG E D +I S + E + Sbjct: 5896 ISPYNSQNYVAKRVL-------GVQTQTVDSAQGSEYDYVIYS-----QTAETAHSVNVN 5943 Query: 255 RLNV 258 R NV Sbjct: 5944 RFNV 5947 >tr:Q8CJY4_STRCO Hypothetical protein SCO2810. Streptomyces coelicolor. Length = 453 Score = 69.1 bits (168), Expect = 7e-12 Identities = 60/255 (23%), Positives = 85/255 (33%), Gaps = 31/255 (12%) Query: 27 DVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPP--TIKSKK-AAAKAGLEESLFE 83 I+DEA Q L L + + + VGD QL P T+ S++ A S Sbjct: 146 RHAIVDEAYQMRSDSLLAVAGLFE-RALFVGDPGQLDPFATVGSEQWAGLAYDPSSSAVT 204 Query: 84 RLVEL--GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPT 141 L+ G+ RL V +R+ RL S+ FY + R + F Sbjct: 205 TLLAHNPGLPQHRLPVSWRLPASAARLVSDAFYPYTPFRSGTRHGDR------SLAFAVP 258 Query: 142 PQFIVPLSFVDN---SGVEEEEP--EGYSYQNPGEAEFVVEIVEYLLRS----------- 185 P +D SG E +P V +V LL Sbjct: 259 SDGSGPDRVIDEAAASGWGLLELPARHTPRTDPEAVRAVAAVVRRLLDREGRATSERSPD 318 Query: 186 --GVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNR 243 + I V T + Q +R L V V T + QGRE D+ ++ S R Sbjct: 319 PAPLTAARIAVGTAHRDQAAAVRAELAGLGV-HDVTVDTANRLQGREYDVTVVLHPLSGR 377 Query: 244 NGEIGFLRDERRLNV 258 F + RL V Sbjct: 378 PDATAFHLETGRLCV 392 >tr:Q9J3E8_9CORO RNA-directed RNA polymerase. Murine hepatitis virus. Length = 2733 Score = 68.7 bits (167), Expect = 9e-12 Identities = 50/244 (20%), Positives = 86/244 (35%), Gaps = 43/244 (17%) Query: 18 SLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAK 74 AL + D++++DE + E + + A K ++ +GD QLP P + K + Sbjct: 1298 INALPELVTDIIVVDEVSMLTNYELSVINSRVRA-KHYVYIGDPAQLPAPRVLLNKGTLE 1356 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 S +L+ + L YR EI S L Y + +S+ Sbjct: 1357 PRYFNS-VTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYNNK--------LKAKNDNSS 1407 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGV 194 + E S N + + ++ L++ + Sbjct: 1408 MC--------------FKVYYKGQTTHESSSAVNMQQ----IHLISKFLKANPSWSNAVF 1449 Query: 195 ITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDER 254 I+PYN Q + + +L ++ TVDS QG E D +I S + E + Sbjct: 1450 ISPYNSQNYVAKRVL-------GLQTQTVDSAQGSEYDFVIYS-----QTAETAHSVNVN 1497 Query: 255 RLNV 258 R NV Sbjct: 1498 RFNV 1501 >tr:Q5B461_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. Length = 530 Score = 67.9 bits (165), Expect = 2e-11 Identities = 44/128 (34%), Positives = 59/128 (46%), Gaps = 12/128 (9%) Query: 24 FKFDVVIIDEAAQALEAECLIPLLLAK----KKFILVGDHKQLP-PTIKSKKAAAKAGLE 78 K +V+I+EAA+A+E PL A ++ ILVGDH+QL LE Sbjct: 237 MKPRIVLIEEAAEAIE----GPLAAACLDSLQQLILVGDHQQLRGHCSVQDLEGDPFYLE 292 Query: 79 ESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGF 138 S+FERLV+ G+ V L Q RM PEI +L + ++ L D SV R E Sbjct: 293 ISMFERLVKNGLKYVTLQRQRRMVPEIRQLLTPIY---GTLQDHESVYEREEAPGMGSNQ 349 Query: 139 FPTPQFIV 146 P Sbjct: 350 LPLTCVKH 357 >tr:Q77NN3_9CORO RNA-directed RNA polymerase. Murine hepatitis virus strain ML-11. Length = 2733 Score = 67.5 bits (164), Expect = 2e-11 Identities = 50/244 (20%), Positives = 85/244 (34%), Gaps = 43/244 (17%) Query: 18 SLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAK 74 AL + D++++DE + E + + A K ++ +GD QLP P + K + Sbjct: 1298 INALPELVTDIIVVDEVSMLTNYELSVINSRVRA-KHYVYIGDPAQLPAPRVLLNKGTLE 1356 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 S +L+ + L YR EI S L Y + +S+ Sbjct: 1357 PRYFNS-VTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYHNK--------LKAKNDNSS 1407 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGV 194 + E S N + + + L++ + Sbjct: 1408 MC--------------FKVYYKGQTTHESSSAVNMQQIYLISK----FLKANPSWSNAVF 1449 Query: 195 ITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDER 254 I+PYN Q + + +L ++ TVDS QG E D +I S + E + Sbjct: 1450 ISPYNSQNYVAKRVL-------GLQTQTVDSAQGSEYDFVIYS-----QTAETAHSVNVN 1497 Query: 255 RLNV 258 R NV Sbjct: 1498 RFNV 1501 >tr:Q9YMB7_9CORO Hypothetical protein. Transmissible gastroenteritis virus. Length = 2121 Score = 67.5 bits (164), Expect = 2e-11 Identities = 53/220 (24%), Positives = 80/220 (36%), Gaps = 38/220 (17%) Query: 19 LALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP--TIKSKKAAAKA 75 AL + D+V++DE + +I L+ K + VGD +QLP T+ +K Sbjct: 1937 NALPEASCDIVVVDEVSMCTNYDLSVINSRLSYKHIVYVGDPQQLPAPRTLINKGVLQPQ 1996 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 + +R+ LG V L+ YR EI + S L YE Sbjct: 1997 DYNV-VTKRMCTLG-PDVFLHKCYRCPAEIVKTVSALVYEN------------------- 2035 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 F F + + S N +E+V+ L I Sbjct: 2036 --KFVPVNPESKQCFKMFVKGQIQIESNSSINNKQ-----LEVVKAFLAHNPKWRKAVFI 2088 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIII 235 +PYN Q + R +L ++ TVDS QG E D +I Sbjct: 2089 SPYNSQNYVARRLL-------GLQTQTVDSAQGSEYDYVI 2121 >tr:Q9J3F2_9CORO RNA-directed RNA polymerase. Murine hepatitis virus. Length = 2732 Score = 67.5 bits (164), Expect = 2e-11 Identities = 50/244 (20%), Positives = 85/244 (34%), Gaps = 43/244 (17%) Query: 18 SLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAK 74 AL + D++++DE + E + + A K ++ +GD QLP P + K + Sbjct: 1297 INALPELVTDIIVVDEVSMLTNYELSVINSRVRA-KHYVYIGDPAQLPAPRVLLNKGTLE 1355 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 S +L+ + L YR EI S L Y + +S+ Sbjct: 1356 PRYFNS-VTKLMCCLGPDIFLGTCYRCPKEIVDTVSALVYHNK--------LKAKNDNSS 1406 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGV 194 + E S N + + + L++ + Sbjct: 1407 MC--------------FKVYYKGQTTHESSSAVNMQQIYLISK----FLKANPSWSNAVF 1448 Query: 195 ITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDER 254 I+PYN Q + + +L ++ TVDS QG E D +I S + E + Sbjct: 1449 ISPYNSQNYVAKRVL-------GLQTQTVDSAQGSEYDFVIYS-----QTAETAHSVNVN 1496 Query: 255 RLNV 258 R NV Sbjct: 1497 RFNV 1500 >tr:Q7RHH6_PLAYO Sen1p. Plasmodium yoelii yoelii. Length = 602 Score = 66.0 bits (160), Expect = 5e-11 Identities = 40/206 (19%), Positives = 65/206 (31%), Gaps = 69/206 (33%) Query: 101 MHPEICRLPSNLFYEGN--------------------------GLVDISSVARRLEYDSA 134 MHP+I P+ +Y + + + D Sbjct: 1 MHPDISHFPNRHYYNNKIKDANYFLFVLLKELEIKKYTKQLLVDDDEKKKNMKYILTDLN 60 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPE-------------------------GYSYQNP 169 F +P +F D ++ E SY N Sbjct: 61 LSKFIENQFGNLPTNFNDILLCQKNEENFHWFFIPLLQHCVFYDIPFSKQKKIKNSYINI 120 Query: 170 GEAEFVVEIVEYL--------LRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKP---- 217 E+E V++ +E+L ++ IG+ITPY + ++ L K Sbjct: 121 HESEIVLQFLEFLHYIFTSENIKEWYK--KIGIITPYAAEKYFLKKALKIFFEKKGYKNN 178 Query: 218 ----VEVSTVDSFQGREKDIIILSLV 239 +++ TVD FQG EK+III V Sbjct: 179 VSNFIDIGTVDGFQGTEKEIIIFMCV 204 >tr:Q6LUB5_PHOPR Hypothetical protein SA0089. Photobacterium profundum (Photobacterium sp. (strain SS9)). Length = 478 Score = 65.6 bits (159), Expect = 7e-11 Identities = 54/272 (19%), Positives = 95/272 (34%), Gaps = 43/272 (15%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ---- 61 ++ T A+ R+ K + IDEA QA + + L + K+ ++VGD Q Sbjct: 148 VVSSTFASVSRQFSMFGKDDIGWLFIDEAGQASPQQAVGALYRS-KRAVVVGDPLQIEPV 206 Query: 62 --LPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 +PP A G E+ + +VQ ++ + R + + +G L Sbjct: 207 FTIPPEFVDGFAKDIFGEEQW------RVWSPTKT-SVQ-KLADRVNRYGTEMIAKGEWL 258 Query: 120 VDISSVARRL--------EYDSANPGFFPTPQFIVP------LSFVDNSGVEEEEPEGYS 165 V RR + N F + S E E + Y Sbjct: 259 GSPLRVHRRCYEPMFSIANKIAYNEKMFHGNESPEGQAHEIWGSSAWIDVSGEVEGKHYV 318 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPV------- 218 N G ++ +++ R D+ +I+P+ +R L+S + V Sbjct: 319 P-NQG--VYISKMIMKYFREVHMLPDVYIISPFRKVAHGVREELSSYLCNQGVPPKDVNK 375 Query: 219 ----EVSTVDSFQGREKDIIILSLVRSNRNGE 246 + TV +FQG+E+ +I L S Sbjct: 376 WIAGRIGTVHTFQGKEEKAVIFVLGASEETKG 407 >tr:Q6VMD6_9CORO 1ab polyprotein. Avian infectious bronchitis virus. Length = 6646 Score = 64.5 bits (156), Expect = 2e-10 Identities = 50/247 (20%), Positives = 82/247 (33%), Gaps = 47/247 (19%) Query: 18 SLALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP---TIKSKKAAA 73 AL + D++++DE + I + + + VGD QLP + + Sbjct: 5248 INALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLNGSLSPK 5307 Query: 74 KAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDS 133 + +L + L YR EI S L Y+G + + Sbjct: 5308 DYNVITNLM----VCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFVAN------------ 5351 Query: 134 ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG 193 P+ V N+G + E S N + EFV + + + Sbjct: 5352 -------NPESRECFKVVVNNGNSDVGHESGSAYNTTQLEFV----KDFVCRNKQWREAT 5400 Query: 194 VITPYNG--QVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLR 251 I+PYN Q + + V TVDS QG E D +I + ++ Sbjct: 5401 FISPYNAMNQRAY---------RMLGLNVQTVDSSQGSEYDYVIFCVTADSQ-----HAL 5446 Query: 252 DERRLNV 258 + R NV Sbjct: 5447 NINRFNV 5453 >tr:Q6DTV4_9CORO Replicase polyprotein 1ab. Avian infectious bronchitis virus partridge/GD/S14/2003. Length = 6639 Score = 63.7 bits (154), Expect = 3e-10 Identities = 49/247 (19%), Positives = 81/247 (32%), Gaps = 47/247 (19%) Query: 18 SLALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP---TIKSKKAAA 73 AL + D++++DE + I + + + VGD QLP + + Sbjct: 5238 INALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLNGSLSPK 5297 Query: 74 KAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDS 133 + +L + L YR EI S L Y+G + + Sbjct: 5298 DYNVITNLM----VCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFVAN------------ 5341 Query: 134 ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG 193 P+ + N G + E S N + EFV + + + Sbjct: 5342 -------NPESRECFKVIVNKGNSDVGHESGSAYNTTQLEFV----KDFVCRNKQWREAT 5390 Query: 194 VITPYNG--QVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLR 251 I+PYN Q + + V TVDS QG E D +I + ++ Sbjct: 5391 FISPYNAMNQRAY---------RMLGLNVQTVDSSQGSEYDYVIFCVTADSQ-----HAL 5436 Query: 252 DERRLNV 258 + R NV Sbjct: 5437 NINRFNV 5443 >tr:Q553Q0_DICDI Hypothetical protein. Dictyostelium discoideum (Slime mold). Length = 355 Score = 63.7 bits (154), Expect = 3e-10 Identities = 53/228 (23%), Positives = 91/228 (39%), Gaps = 20/228 (8%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDH----KQLPPTIKSKKAAAKAGLE 78 VI+D + Q +E + L L LA IL GD P ++KSKK ++ Sbjct: 64 NLDIKWVIVDNSHQEVEPKTLCALNLAD-HVILFGDSVSDISVGPISVKSKKFRNL--MK 120 Query: 79 ESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGF 138 +L +RL + L Y I + SNL S + F Sbjct: 121 INLSKRL-SNYIRPFTLTSNY-----IPSIFSNLLSLDKINFQDLSFFNFYKEKPIFSFF 174 Query: 139 FPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLR-SGVPPEDIGVITP 197 + + +N +E + + N E EFV ++V +LL+ + P +I +++P Sbjct: 175 NLESIESLEIMDNENLDDKEMIQK---FTNIKECEFVCKLVRFLLKTLKLDPLEIVIVSP 231 Query: 198 YNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNG 245 + Q LI+ + L + V ++ Q +I+SLVR+ + Sbjct: 232 FEAQRNLIKKNILD---LPFINVLPIEMAQYYHFSYLIVSLVRTKGDN 276 >tr:Q5I5Y0_9CORO 1b. Avian infectious bronchitis virus. Length = 2652 Score = 63.3 bits (153), Expect = 4e-10 Identities = 49/247 (19%), Positives = 82/247 (33%), Gaps = 47/247 (19%) Query: 18 SLALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP---TIKSKKAAA 73 AL + D++++DE + I + + + VGD QLP + + Sbjct: 1251 INALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLNGSLSPK 1310 Query: 74 KAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDS 133 + +L + L YR EI S L Y+G + + Sbjct: 1311 DYNVVTNLM----VCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIAN------------ 1354 Query: 134 ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG 193 P+ + N+G + E S N + EFV + + + Sbjct: 1355 -------NPESRQCFKVIVNNGNSDVGHESGSAYNITQLEFV----KDFVCRNKEWREAT 1403 Query: 194 VITPYNG--QVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLR 251 I+PYN Q + + V TVDS QG E D +I + ++ Sbjct: 1404 FISPYNAMNQRAY---------RMLGLNVQTVDSSQGSEYDYVIFCVTADSQ-----HAL 1449 Query: 252 DERRLNV 258 + R NV Sbjct: 1450 NINRFNV 1456 >tr:Q7P6Q0_FUSNV Superfamily I DNA helicase. Fusobacterium nucleatum subsp. vincentii ATCC 49256. Length = 1040 Score = 63.3 bits (153), Expect = 4e-10 Identities = 56/281 (19%), Positives = 101/281 (35%), Gaps = 51/281 (18%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 ++ T A+ R E+ + +VIIDEA QA + LL + I+VGD Q+ P Sbjct: 718 VLSTTFASVSRAFKDFEENELGIVIIDEAGQATPFSAMG-LLYRSNRCIIVGDPLQVEPV 776 Query: 66 -IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHP---EICRLPSNLFYEGNGLVD 121 + + L + E ++ N Y + +NL+Y G + Sbjct: 777 MTVTSTLIRAIANKYELNKLEKEFNIAGKIFN--YTSPSLSIQTLADYANLYYGKIGETE 834 Query: 122 --------------ISSVARRLEYDSANPGFFPTPQFIVPLS-----FVDNSGVEEEEPE 162 + ++ R+ YD + V F+D G E Sbjct: 835 VGCPLVVHRRCLSPMFDISNRISYDDRMINKCMPDKVKVVYILEKNEFIDIKGQEV---G 891 Query: 163 GYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG---------VITPYNGQVELIRNILNSRC 213 ++ + E ++EI++ + IG VI+P+ + ++N + Sbjct: 892 NGNHYVKKQGEKIIEIIK----DCIKNRGIGVFENSKHLYVISPFTTVINGLKNDIKKTF 947 Query: 214 SLKPVE---------VSTVDSFQGREKDIIILSLVRSNRNG 245 + E + TV FQG+E + +IL L N + Sbjct: 948 KDENKEAVNNWCNTCLGTVHKFQGKEANSVILLLGCDNNSK 988 >tr:Q7VJC2_HELHP Hypothetical protein. Helicobacter hepaticus. Length = 560 Score = 63.3 bits (153), Expect = 4e-10 Identities = 59/258 (22%), Positives = 91/258 (35%), Gaps = 49/258 (18%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFI------ 54 A VV +T G + ++L L KF + +DE A PL+ + Sbjct: 274 NAFVVGVTLDGFIKRYENLEL---KFHHIFLDECA-------YAPLIKTCALCVDSTPLS 323 Query: 55 LVGDHKQLPPT--------IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEIC 106 GDHKQL P ++++ A +LF + G + + QY+ +I Sbjct: 324 FFGDHKQLSPVCEMPPNELMRAENENAYIWNLSALFLESLCQGTPIKEIIKQYQQTCDIP 383 Query: 107 RLP----SNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPE 162 S L +++ + Y G V +SG + E Sbjct: 384 PFAFMRMSKLSKTHRYGNNLAHILDEYIYRMGLKG-----NDEQMEILVFDSGSK---SE 435 Query: 163 GYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQV-ELIRNILNSRCSLKPVEVS 221 + EA ++ L ED VITP+ Q LIR + R Sbjct: 436 QDRRLSESEARACEQLCAKL-----KGEDFAVITPFIKQRQRLIRQMSRERIF------- 483 Query: 222 TVDSFQGREKDIIILSLV 239 T+ S QG+E D +I S V Sbjct: 484 TIHSSQGQEFDNVIFSPV 501 >tr:Q6R4P7_9CORO 1ab. Avian infectious bronchitis virus. Length = 6631 Score = 63.3 bits (153), Expect = 4e-10 Identities = 50/247 (20%), Positives = 81/247 (32%), Gaps = 47/247 (19%) Query: 18 SLALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP---TIKSKKAAA 73 AL + D++++DE + I + + + VGD QLP + + Sbjct: 5230 INALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLNGSLSPK 5289 Query: 74 KAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDS 133 + +L + L YR EI S L Y+G + + Sbjct: 5290 DYNVVTNLM----VCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIAN------------ 5333 Query: 134 ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG 193 P+ + N+G + E S N + EFV + + + Sbjct: 5334 -------NPESRQCFKVIVNNGNSDVGHESGSAYNTTQLEFV----KDFVCRNKEWREAT 5382 Query: 194 VITPYNG--QVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLR 251 I+PYN Q + + V TVDS QG E D +I V + Sbjct: 5383 FISPYNAMNQRAY---------RMLGLNVQTVDSSQGSEYDYVIF-CV----TADSNHAL 5428 Query: 252 DERRLNV 258 + R NV Sbjct: 5429 NINRFNV 5435 >tr:Q7R6G3_GIALA GLP_170_208849_213144. Giardia lamblia ATCC 50803. Length = 1431 Score = 62.1 bits (150), Expect = 9e-10 Identities = 39/98 (39%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 19 LALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLE 78 +K +II+EAA+ E E + LLL K IL+GD QLPP I+ K + A L+ Sbjct: 1071 YRCQKNPARHIIIEEAARLAEHELALLLLLTFDKLILIGDVLQLPPLIQDCKLTSTAALD 1130 Query: 79 ESLFERLV---ELGVSVVRLNVQYRMHPEICRLPSNLF 113 SLF RL G+ +V L Q R PEI L +L+ Sbjct: 1131 WSLFHRLCYSSREGIPIVTLEEQARSVPEIADLYRSLY 1168 Score = 38.6 bits (89), Expect = 0.009 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 21/77 (27%) Query: 191 DIGVITPYNGQVELI-----RNILNSRCSLKPVE--------------VSTVDSFQGREK 231 + +++ Y+ Q + I +L + CS V T D +QG E Sbjct: 1309 SVALLSLYHSQKQYILSDPVIAVLRNMCSDTTFTIDSDTHLKVRLNLDVETSDGYQGLEA 1368 Query: 232 DIIILSLV--RSNRNGE 246 D++ LSL R N Sbjct: 1369 DVVFLSLSGPRGNEFRN 1385 >tr:Q6DV55_9CORO Replicase polyprotein 1ab. Avian infectious bronchitis virus. Length = 6610 Score = 61.8 bits (149), Expect = 1e-09 Identities = 49/247 (19%), Positives = 82/247 (33%), Gaps = 47/247 (19%) Query: 18 SLALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP---TIKSKKAAA 73 AL + D++++DE + I + + + VGD QLP + + Sbjct: 5209 INALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLNGSLSPK 5268 Query: 74 KAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDS 133 + +L + L YR EI S L Y+G + + Sbjct: 5269 DYNVVTNLM----VCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIAN------------ 5312 Query: 134 ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG 193 P+ + N+G + E S N + EFV + + + Sbjct: 5313 -------NPESRQCFKVIVNNGNSDVGHESGSAYNTTQLEFV----KDFVCRNKEWREAT 5361 Query: 194 VITPYNG--QVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLR 251 I+PYN Q + + V TVDS QG E D +I + ++ Sbjct: 5362 FISPYNAMNQRAY---------RMLGLNVQTVDSSQGSEYDYVIFCVTADSQ-----HAL 5407 Query: 252 DERRLNV 258 + R NV Sbjct: 5408 NINRFNV 5414 >tr:Q7S3A3_NEUCR Hypothetical protein. Neurospora crassa. Length = 1054 Score = 61.0 bits (147), Expect = 2e-09 Identities = 22/42 (52%), Positives = 26/42 (61%), Gaps = 3/42 (7%) Query: 220 VSTVDSFQGREKDIIILSLVRSNRN---GEIGFLRDERRLNV 258 VS VDS+QG E DI++LSLVRS IGFL + R V Sbjct: 661 VSNVDSYQGEENDIVLLSLVRSPDPVYGRNIGFLDNPHRAVV 702 Score = 45.6 bits (107), Expect = 7e-05 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 V+ T TG R LA + + ++I+EAA+ E L + ++ +LVGDH Q+ Sbjct: 574 VIGCTTTGLTKYRAFLA--GLQPNTLLIEEAAETREGNITSALYPSLQQLVLVGDHAQMS 631 Query: 64 P 64 P Sbjct: 632 P 632 >tr:Q5MNZ3_9CORO Polyprotein 1b. Avian infectious bronchitis virus. Length = 2652 Score = 59.8 bits (144), Expect = 4e-09 Identities = 49/247 (19%), Positives = 82/247 (33%), Gaps = 47/247 (19%) Query: 18 SLALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP---TIKSKKAAA 73 AL + D++++DE + I + + + VGD QLP + + Sbjct: 1251 INALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLNGSLSPK 1310 Query: 74 KAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDS 133 + +L + L YR EI S L Y+G + + Sbjct: 1311 DYNVVTNLM----VCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIAN------------ 1354 Query: 134 ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG 193 P+ + N+G + E S N + EFV + + + Sbjct: 1355 -------NPESRECFKVIVNNGNSDVGHESGSAYNTTQLEFV----KDFVCRNKQWREAI 1403 Query: 194 VITPYNG--QVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLR 251 I+PYN Q + + V TVDS QG E D +I + ++ Sbjct: 1404 FISPYNAMNQRAY---------RMLGLNVQTVDSSQGSEYDYVIFCVTADSQ-----HAL 1449 Query: 252 DERRLNV 258 + R NV Sbjct: 1450 NINRFNV 1456 >tr:Q4ZJT3_9CORO Polyprotein 1b. Avian infectious bronchitis virus. Length = 2652 Score = 59.8 bits (144), Expect = 4e-09 Identities = 49/247 (19%), Positives = 82/247 (33%), Gaps = 47/247 (19%) Query: 18 SLALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP---TIKSKKAAA 73 AL + D++++DE + I + + + VGD QLP + + Sbjct: 1251 INALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLNGSLSPK 1310 Query: 74 KAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDS 133 + +L + L YR EI S L Y+G + + Sbjct: 1311 DYNVVTNLM----VCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIAN------------ 1354 Query: 134 ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG 193 P+ + N+G + E S N + EFV + + + Sbjct: 1355 -------NPESRECFKVIVNNGNSDVGHESGSAYNTTQLEFV----KDFVCRNKQWREAI 1403 Query: 194 VITPYNG--QVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLR 251 I+PYN Q + + V TVDS QG E D +I + ++ Sbjct: 1404 FISPYNAMNQRAY---------RMLGLNVQTVDSSQGSEYDYVIFCVTADSQ-----HAL 1449 Query: 252 DERRLNV 258 + R NV Sbjct: 1450 NINRFNV 1456 >tr:Q4ZJT1_9CORO Polyprotein 1b. Avian infectious bronchitis virus. Length = 2652 Score = 59.8 bits (144), Expect = 4e-09 Identities = 49/247 (19%), Positives = 82/247 (33%), Gaps = 47/247 (19%) Query: 18 SLALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP---TIKSKKAAA 73 AL + D++++DE + I + + + VGD QLP + + Sbjct: 1251 INALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLNGSLSPK 1310 Query: 74 KAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDS 133 + +L + L YR EI S L Y+G + + Sbjct: 1311 DYNVVTNLM----VCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIAN------------ 1354 Query: 134 ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG 193 P+ + N+G + E S N + EFV + + + Sbjct: 1355 -------NPESRECFKVIVNNGNSDVGHESGSAYNTTQLEFV----KDFVCRNKQWREAI 1403 Query: 194 VITPYNG--QVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLR 251 I+PYN Q + + V TVDS QG E D +I + ++ Sbjct: 1404 FISPYNAMNQRAY---------RMLGLNVQTVDSSQGSEYDYVIFCVTADSQ-----HAL 1449 Query: 252 DERRLNV 258 + R NV Sbjct: 1450 NINRFNV 1456 >tr:Q64958_9CORO Potential chimeric protein. Avian infectious bronchitis virus. Length = 2155 Score = 59.4 bits (143), Expect = 5e-09 Identities = 49/247 (19%), Positives = 82/247 (33%), Gaps = 47/247 (19%) Query: 18 SLALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP---TIKSKKAAA 73 AL + D++++DE + I + + + VGD QLP + + Sbjct: 1309 INALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVYVGDPAQLPAPRTLLNGSLSPK 1368 Query: 74 KAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDS 133 + +L + L YR EI S L Y+G + + Sbjct: 1369 DYNVVTNLM----VCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFIAN------------ 1412 Query: 134 ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG 193 P+ + N+G + E S N + EFV + + + Sbjct: 1413 -------NPESRECFKVIVNNGNSDVGHESGSAYNTTQLEFV----KDFVCRNKQWREAI 1461 Query: 194 VITPYNG--QVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLR 251 I+PYN Q + + V TVDS QG E D +I + ++ Sbjct: 1462 FISPYNAMNQRAY---------RMLGLNVQTVDSSQGSEYDYVIFCVTADSQ-----HAL 1507 Query: 252 DERRLNV 258 + R NV Sbjct: 1508 NINRFNV 1514 >tr:Q7T835_9CORO Replicase polyprotein 1ab. Avian infectious bronchitis virus. Length = 6641 Score = 59.4 bits (143), Expect = 5e-09 Identities = 49/248 (19%), Positives = 83/248 (33%), Gaps = 48/248 (19%) Query: 18 SLALEKFKFDVVIIDEAAQALE-AECLIPLLLAKKKFILVGDHKQLPP---TIKSKKAAA 73 AL + D++++DE + I + + + VGD QLP + + Sbjct: 5238 INALPEVSCDILLVDEVSMLTNYELSFINGKINYQYVVNVGDPAQLPAPRTLLNGSLSPK 5297 Query: 74 KAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDS 133 + +L + L YR EI S L Y+G + + Sbjct: 5298 DYNVITNLM----VCVKPDIFLAKCYRCPKEIVDTVSTLVYDGKFVAN------------ 5341 Query: 134 ANPGFFPTPQFIVPLSFVDNSGVEEEEPE-GYSYQNPGEAEFVVEIVEYLLRSGVPPEDI 192 P+ + N+G + + G S Q + EFV + + + Sbjct: 5342 -------NPESRECFKVIVNNGNSDVGHKSGSSLQTQHQLEFV----KDFVCRNKQWREA 5390 Query: 193 GVITPYNG--QVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFL 250 I+PYN Q + + V TVDS QG E D +I + ++ Sbjct: 5391 TFISPYNAMNQRAY---------RMLGLNVQTVDSSQGSEYDYVIFCVTADSQ-----HA 5436 Query: 251 RDERRLNV 258 + R NV Sbjct: 5437 LNINRFNV 5444 >tr:Q52KK8_BRARE Hypothetical protein. Brachydanio rerio (Zebrafish) (Danio rerio). Length = 231 Score = 59.4 bits (143), Expect = 6e-09 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 18/100 (18%) Query: 176 VEIVEYLLR-SGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDII 234 V + + L++ SGV PE I ++TPYN QV I+ L + V V TV QG E + Sbjct: 58 VRVADLLIKQSGVSPEHIAILTPYNAQVSEIKMTLEKKNVR-NVTVCTVMKSQGSEWPYV 116 Query: 235 ILSLVRSNRNGEI----------------GFLRDERRLNV 258 I+S VRS +I GF+ D ++NV Sbjct: 117 IVSTVRSCSTSDIQAYRVRPHKAWLGKRLGFVTDANQVNV 156 >tr:Q5GZ23_XANOR Hypothetical protein. Xanthomonas oryzae (pv. oryzae). Length = 1049 Score = 59.4 bits (143), Expect = 6e-09 Identities = 57/305 (18%), Positives = 104/305 (34%), Gaps = 70/305 (22%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 ++ T A+ +R+ + + +I+DEA QA + ++ A ++ ++VGD Q+PP Sbjct: 723 VVSTTFASVRRQFAGVGSEELGWLIVDEAGQAPPQATVGAMMRA-QRVVVVGDPLQIPPV 781 Query: 66 I-----------------KSKKAAAKAGLEESLFERLVELGVS---------VVRLNVQY 99 + + + A ++L +R GV V L + Sbjct: 782 VPHGTRLLQLLGNHWLGQQYARYAVDKNSVQTLADRAYAFGVRHPASPDSFIGVPLVMHR 841 Query: 100 RMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEE 159 R + + + + Y A G + P S+ Sbjct: 842 RCDAPMFGIANQIAYANR-------------MKHAKNGIATLHPRLGPSSWWHVDA---- 884 Query: 160 EPEGYSYQNPGEAE--FVVEIVEYLLRSGVPPE---DIGVITPYNGQVELIRNIL----- 209 S P +A F + Y+ ++G D+ VITP+ + +L Sbjct: 885 ISGNGSKFVPAQARRLFAALVDLYVSQAGACDRRLPDVFVITPFREVRSGLCTLLCTRAN 944 Query: 210 --------------NSRCSLKPVEVSTVDSFQGREKDIIILSLVR-SNRNGEIGFLRDE- 253 + + TV +FQG+E DI+ L S+ +G I + E Sbjct: 945 WEQALAGRSIPVPTKANLEKFRSNIGTVHTFQGKECDIVFFVLGCDSSHSGAINWASGEP 1004 Query: 254 RRLNV 258 LNV Sbjct: 1005 NILNV 1009 >tr:Q9AL64_SHIFL Hypothetical protein. Shigella flexneri 2a. Length = 338 Score = 59.1 bits (142), Expect = 7e-09 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 12/122 (9%) Query: 148 LSFVDNSGVEEEEPEGYSYQNPGEAEFV---VEIVEYLLRSGVP---PEDIGVITPYNGQ 201 + ++ G E G S N EAE + + + + + E +G++TP++ Q Sbjct: 1 MGYLHIDGKGELASSG-SRYNLLEAETIAVWLAENQQNIEAHYGKSLHEVVGIVTPFSAQ 59 Query: 202 VELIRNILNSRCSLKP-----VEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRL 256 V I+ +L + + V TV S QG E+ I+I S V S D L Sbjct: 60 VSTIKQVLGKQDISTGTNEKSLTVGTVHSLQGAERAIVIFSPVYSKHEDGGFIDSDNSML 119 Query: 257 NV 258 NV Sbjct: 120 NV 121 >tr:Q9X5H7_HELPY HelA. Helicobacter pylori (Campylobacter pylori). Length = 88 Score = 57.9 bits (139), Expect = 2e-08 Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 14/78 (17%) Query: 24 FKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT-------------IKSKK 70 +FDV IIDE +A E LIP L KK IL+GDH QLPP+ I++ Sbjct: 1 MEFDVTIIDETGRATAPEILIPALR-TKKLILIGDHNQLPPSIDRYLLEQLESDDIQNLD 59 Query: 71 AAAKAGLEESLFERLVEL 88 A + LEES FE L + Sbjct: 60 AIDRQLLEESFFENLYKY 77 >tr:Q8P644_XANCP DNA helicase related protein. Xanthomonas campestris (pv. campestris). Length = 1087 Score = 57.9 bits (139), Expect = 2e-08 Identities = 57/296 (19%), Positives = 100/296 (33%), Gaps = 64/296 (21%) Query: 3 KVVAMTCTGAASKRKSLALEKFK-FDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 VV + + AS +S +++DEA QA + L + ++ +LVGD Q Sbjct: 787 MVVPVLSSTFASFARSFGSLGASEIGWLLVDEAGQAAPQAAVGALWRS-RRALLVGDPLQ 845 Query: 62 LPPTIK---------------------SKKAAAKAGLEESLFERLVELGVSVVRLN---V 97 L P + ++K+A E + + R+ + V Sbjct: 846 LKPIVTVSDAVLEHMRTRYGVDAHWIPNQKSAQVLADEATPWGRMAGPAGGKSWVGLPLV 905 Query: 98 QYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVE 157 +R +N +V + R + A+ Sbjct: 906 VHRRCDRPMYALANRIAYDGAMVYGTIAPRADKETRASLL------------------TG 947 Query: 158 EEEPEGYSYQN--PGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSL 215 G S N P E + + ++++ L GV +DI VITP+ ++ L Sbjct: 948 WIHISGTSEGNWVPAEGQVLRDLLKRLHGDGVEAKDISVITPFKA----VQQNLKRMLPG 1003 Query: 216 KPVEVSTVDSFQGREKDIIILSL-------------VRSNRNGEIGFLRDERRLNV 258 K V T+ + QG+E ++I+ L V + R +RRL V Sbjct: 1004 KMVS-GTIHTMQGKEASVVIVILGGNTAGSGARNWAVSEPNLLNVAATRAKRRLYV 1058 >tr:Q7MZ50_PHOLL Similarities with DNA helicase related protein. Photorhabdus luminescens (subsp. laumondii). Length = 1104 Score = 57.5 bits (138), Expect = 2e-08 Identities = 64/293 (21%), Positives = 108/293 (36%), Gaps = 50/293 (17%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 ++ T A+ R +E + ++IDEA QA + + L A K+ ++VGD Q+ P Sbjct: 782 VLSTTFASIGRMFHGVESEELGWLMIDEAGQAPPQQAVGGLWRA-KRVLVVGDPLQIEPV 840 Query: 66 IKSKKAAAKAGLEESLFERLVE--LGVSVV-----RLNVQ---YRMHPEICRL--PSNLF 113 L ERL L L+VQ R++ C L +NL Sbjct: 841 ---------FTTPPPLVERLCLDALNEKAKDWNPGLLSVQQVADRVNHWGCELEVMNNLI 891 Query: 114 YEGNGL-------VDISSVARRLEYDSANPGFFPTPQFI-VPLSFVDNSGVEE-EEPEGY 164 + G L + S+A ++ Y+ + P++ + + G Sbjct: 892 WLGIPLWVHRRCIEPMFSLANKMAYNGRMIHGLDADKIRCQPVNNILENHWLASVGGTGE 951 Query: 165 SYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSR-----------C 213 + ++++++ LL + V I VITP+ + +L R Sbjct: 952 KQYRDSHGKDLLKLLDQLLVANVSLHSIYVITPFKAVKSALCELLGKRDLATWRQSMPLM 1011 Query: 214 SLKPVEV------STVDSFQGREKDIIILSLVRSNRNGEIG--FLRDERRLNV 258 + K + V TV +FQG+E DI+I L N LNV Sbjct: 1012 TRKELNVWQKNCIGTVHTFQGKENDIVIFVLGCDENNDGGAKWAASKPNLLNV 1064 >tr:Q6XN63_RHOER Hypothetical protein. Rhodococcus erythropolis. Length = 431 Score = 57.5 bits (138), Expect = 2e-08 Identities = 48/226 (21%), Positives = 80/226 (35%), Gaps = 37/226 (16%) Query: 27 DVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFE--- 83 DV+I+DE+ Q A+ L L K+ + VGD Q+ P + + Sbjct: 159 DVLIVDESWQCTYAD-LGALGAMAKQVVCVGDPGQIDPVVTGDVTRWEGSETAPDLPAPI 217 Query: 84 -RLVELGVSVVRLNVQY--RMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFF- 139 L G +V + + + R+ P L + LFY R E+ + + G Sbjct: 218 ALLAAHGDAVGMVRLAHTWRLGPATTALIAPLFYPDLPFTSK----RPPEHLTDSSGAVW 273 Query: 140 PTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGV---------PPE 190 P + G S +P V LL + + Sbjct: 274 PELAHRPITACA-----------GPS--DPALVTACAARVRELLAADLVTTTGQRSMTAA 320 Query: 191 DIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIIL 236 D+ V+ P+ Q IR +L+ V V T +S QG E+ +++ Sbjct: 321 DVAVVVPHVTQAAAIRALLS---EHPDVLVGTANSLQGLERPAVVV 363 >tr:Q4ZPA8_PSESY DNA helicase related protein. Pseudomonas syringae pv. syringae B728a. Length = 1087 Score = 57.5 bits (138), Expect = 2e-08 Identities = 56/290 (19%), Positives = 95/290 (32%), Gaps = 52/290 (17%) Query: 3 KVVAMTCTGAASKRKSLALEKFK-FDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 VV + + AS +S +++DEA QA + + L + ++ +LVGD Q Sbjct: 787 MVVPVLSSTFASFARSFGSLGASEIGWLLVDEAGQAAPQQAVGALWRS-RRALLVGDPLQ 845 Query: 62 LPPTIKSKKA-----AAKAGLEESLFERLVELGVSVVRLNVQYRM--------------- 101 L P + A + G++ V RM Sbjct: 846 LKPIVTVSDAVLEHMRTRYGVDAHWIPNQKSAQVLADEATPWGRMAGPAGGKTWVGLPLV 905 Query: 102 HPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEP 161 C P Y L+ G L+ + + Sbjct: 906 VHRRCDKP---MYALANLIAYDGAMVY--------GTIAPHADKETLASLPTGWIHVSGA 954 Query: 162 EGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVS 221 ++ P E + + ++++ L GV +DI VITP+ ++ L K V Sbjct: 955 SEGNWV-PAEGQVLRDLLKRLHGDGVEAKDISVITPFKA----VQQNLKRMLRGKLVS-G 1008 Query: 222 TVDSFQGREKDIIILSL-------------VRSNRNGEIGFLRDERRLNV 258 T+ + QG+E I+I+ L V + R +RRL V Sbjct: 1009 TIHTMQGKEASIVIVVLGGNTAGAGARDWAVSEPNLLNVAATRAKRRLYV 1058 >tr:Q5TR30_ANOGA ENSANGP00000028467. Anopheles gambiae str. PEST. Length = 140 Score = 57.1 bits (137), Expect = 2e-08 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Query: 202 VELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRS-----NRNGEIGFLRDERRL 256 + +R SL V ++ +D++QG E I++LSLVRS IGFL E R+ Sbjct: 1 MLQFVAEKKNRPSLHGVRIAVIDNYQGEESKIVLLSLVRSGTGGNGGTDTIGFLAHENRI 60 Query: 257 NV 258 V Sbjct: 61 CV 62 >tr:O51577_BORBU Exodeoxyribonuclease V, alpha chain (RecD). Borrelia burgdorferi (Lyme disease spirochete). Length = 610 Score = 57.1 bits (137), Expect = 3e-08 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 12/100 (12%) Query: 22 EKFKFDVVIIDEAAQALEAECLIPLLLAK---KKFILVGDHKQLPPTIKSKKAAAKAGLE 78 + FDV+IIDEA+ +A + LL A K I+VGD QLP + + Sbjct: 295 NQLNFDVIIIDEASMV-DAHTFLKLLKATPITTKLIMVGDKNQLPSVN-------EGNVY 346 Query: 79 ESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNG 118 SL +V L +R + EI L S Y+ + Sbjct: 347 SSLLGIQKINSDNVEDLKENFRSNKEI-NLLSKAIYKEDS 385 >tr:O54378_9LACT Exonuclease RexA. Lactococcus lactis. Length = 1173 Score = 56.4 bits (135), Expect = 4e-08 Identities = 35/179 (19%), Positives = 63/179 (35%), Gaps = 13/179 (7%) Query: 25 KFDVVIIDEAAQ--ALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 +D ++IDE Q + E ++ LL +VGD KQ A GL + Sbjct: 366 HYDEIMIDE-YQDTSHTQERMLELLSNGHNLFMVGDIKQ----SIYGFRLADPGLFLEKY 420 Query: 83 ERLVELGVSV--VRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 + + +RL +R E+ +++F + E Sbjct: 421 KSYDQAENPNQLIRLKENFRSRGEVLNFTNDIFKHLMDEKLGEMTYGKEEALVQGNISDY 480 Query: 141 TP----QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 F L + EEE + + GE + + ++ L+ GV P+DI ++ Sbjct: 481 PVEAEKDFYPELLLYKENTSEEEIEDSEVKISDGEIKGAAQEIKKLIEYGVEPKDIAIL 539 >tr:Q5DIC7_CVHSA Orf1ab polyprotein. SARS coronavirus WH20. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q5Y189_CVHSA Nonstructural polyprotein pp1ab. SARS Coronavirus CDC#200301157. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6JH40_CVHSA Orf1ab polyprotein. SARS coronavirus Sino3-11. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6JH48_CVHSA Orf1ab polyprotein. SARS coronavirus Sino1-11. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6UZF1_CVHSA Putative orf1ab polyprotein. SARS coronavirus PUMC03. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6UZF5_CVHSA Putative orf1ab polyprotein. SARS coronavirus PUMC02. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6V586_CVHSA Putative orf1ab polyprotein. SARS coronavirus PUMC01. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6RCW7_CVHSA Putative polyprotein. SARS coronavirus TW9. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6RCX8_CVHSA Putative polyprotein. SARS coronavirus TW8. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6RCY9_CVHSA Putative polyprotein. SARS coronavirus TW7. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6RD00_CVHSA Putative polyprotein. SARS coronavirus TW6. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6RD11_CVHSA Putative polyprotein. SARS coronavirus TW5. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6RD22_CVHSA Putative polyprotein. SARS coronavirus TW4. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6RD33_CVHSA Putative polyprotein. SARS coronavirus TW3. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6RD44_CVHSA Putative polyprotein. SARS coronavirus TW2. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6RD55_CVHSA Putative polyprotein. SARS coronavirus TW11. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6RD66_CVHSA Putative polyprotein. SARS coronavirus TW10. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6VA80_CVHSA Putative orf1ab polyprotein. SARS coronavirus CUHK-AG03. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6VA91_CVHSA Putative orf1ab polyprotein. SARS coronavirus CUHK-AG02. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6VAA2_CVHSA Putative orf1ab polyprotein. SARS coronavirus CUHK-AG01. Length = 7073 Score = 55.6 bits (133), Expect = 8e-08 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKDKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q692E6_CVHSA Replicase 1ab. SARS coronavirus TJF. Length = 7073 Score = 55.2 bits (132), Expect = 1e-07 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKEKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6R7Y8_CVHSA Nonstructural polyprotein. SARS coronavirus NS-1. Length = 7073 Score = 55.2 bits (132), Expect = 1e-07 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKEKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q6S8D8_CVHSA Orf1ab. SARS coronavirus ShanghaiQXC2. Length = 6880 Score = 55.2 bits (132), Expect = 1e-07 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5469 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5527 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5528 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKEKSAQ 5578 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5579 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5620 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5621 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5668 Query: 256 LNV 258 NV Sbjct: 5669 FNV 5671 >tr:Q6TPE9_CVHSA Nonstructural polyprotein. SARS coronavirus GZ02. Length = 7073 Score = 55.2 bits (132), Expect = 1e-07 Identities = 54/243 (22%), Positives = 79/243 (32%), Gaps = 43/243 (17%) Query: 19 LALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLP-PTIKSKKAAAKA 75 AL + D+V+ DE + A + + L A K ++ +GD QLP P K + Sbjct: 5662 NALPETTADIVVFDEISMATNYDLSVVNARLRA-KHYVYIGDPAQLPAPRTLLTKGTLEP 5720 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S RL++ + L R EI S L Y+ + + SA Sbjct: 5721 EYFNS-VCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNK--------LKAHKEKSAQ 5771 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + S N + V E L I Sbjct: 5772 CFKMF--------------YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFI 5813 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERR 255 +PYN Q + IL + TVDS QG E D +I + + E + R Sbjct: 5814 SPYNSQNAVASKIL-------GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNR 5861 Query: 256 LNV 258 NV Sbjct: 5862 FNV 5864 >tr:Q8PA55_XANCP Hypothetical protein XCC1635. Xanthomonas campestris (pv. campestris). Length = 1028 Score = 54.1 bits (129), Expect = 2e-07 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 4 VVAMTCTGAASK-RKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 VV + T AS R L + F +++DEA QA + LL ++ ++VGD +Q+ Sbjct: 787 VVPVISTTFASVERMLGRLPQETFGWLLVDEAGQATPQAVVGALLRC-QRAVVVGDPQQV 845 Query: 63 PPTI 66 P + Sbjct: 846 EPVV 849 >tr:Q660N9_BORGA Exodeoxyribonuclease V, alpha chain. Borrelia garinii. Length = 610 Score = 54.1 bits (129), Expect = 2e-07 Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 12/121 (9%) Query: 22 EKFKFDVVIIDEAAQALEAECLIPLLLA---KKKFILVGDHKQLPPTIKSKKAAAKAGLE 78 + FDV+IIDEA+ +A + LL A K I+VGD QLP + + Sbjct: 295 NQLNFDVIIIDEASMV-DAYTFLKLLKATPITTKLIIVGDKNQLPSVN-------EGNVY 346 Query: 79 ESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGF 138 SL +V L +R + EI L S Y+ + + + Sbjct: 347 SSLLGIKKITNDNVEDLKENFRSNKEI-NLLSKAIYKEDSTLICKYINNNKNIKLKEIEK 405 Query: 139 F 139 Sbjct: 406 I 406 >tr:Q9PAT6_XYLFA Hypothetical protein. Xylella fastidiosa. Length = 347 Score = 53.7 bits (128), Expect = 3e-07 Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 15/114 (13%) Query: 158 EEEPEGYSYQNPGEAEFVVEIV----EYLLRS-GVPPEDI-GVITPYNGQVELIRNILNS 211 ++ G S N EAE + + E L G P I G++TP+ Q I Sbjct: 13 CQKSSGGSRYNLYEAETIAAWLAEHHESLQAQYGEPLHRIVGILTPFETQARAISQACRD 72 Query: 212 RCSLKPVE-----VSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDER--RLNV 258 E V TV + QG E+ ++I S V S GF+ D+R LNV Sbjct: 73 VGIEVGHEKDGITVGTVHALQGAERPVVIFSAVYSKHADG-GFI-DQRASMLNV 124 >tr:Q5F8K1_NEIG1 Putative exodeoxyribonuclease V alpha subunit. Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090). Length = 581 Score = 53.7 bits (128), Expect = 3e-07 Identities = 41/189 (21%), Positives = 66/189 (34%), Gaps = 30/189 (15%) Query: 26 FDVVIIDEAAQALEAECLIPLLLAKK---KFILVGDHKQLPPT-------IKSKKAAAKA 75 FDV+I+DEA+ A ++ LL A K + IL+GD QLP + S+K Sbjct: 237 FDVLIVDEASMLDTA-LMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDG 295 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEIC-----RLPSNLFYEGNGLVDISSVARRLE 130 + L L E G SV +P + L + + N + + A Sbjct: 296 ETHQRLAGFLPEHGFSVS-------ANPPVLAQNTAHLSFSHRFGDNSGIGCLARAAVSG 348 Query: 131 YDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPE 190 + A F P + N+ VE +Y + + + Sbjct: 349 DEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI-------S 401 Query: 191 DIGVITPYN 199 DI V+ + Sbjct: 402 DIVVLAAWR 410 >tr:O68924_NEIGO RecD. Neisseria gonorrhoeae. Length = 581 Score = 53.7 bits (128), Expect = 3e-07 Identities = 41/189 (21%), Positives = 66/189 (34%), Gaps = 30/189 (15%) Query: 26 FDVVIIDEAAQALEAECLIPLLLAKK---KFILVGDHKQLPPT-------IKSKKAAAKA 75 FDV+I+DEA+ A ++ LL A K + IL+GD QLP + S+K Sbjct: 237 FDVLIVDEASMLDTA-LMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDG 295 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEIC-----RLPSNLFYEGNGLVDISSVARRLE 130 + L L E G SV +P + L + + N + + A Sbjct: 296 ETHQRLAGFLPEHGFSVS-------ANPPVLAQNTAHLSFSHRFGDNSGIGCLARAAVSG 348 Query: 131 YDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPE 190 + A F P + N+ VE +Y + + + Sbjct: 349 DEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI-------S 401 Query: 191 DIGVITPYN 199 DI V+ + Sbjct: 402 DIVVLAAWR 410 >tr:Q9JUB8_NEIMA Exodeoxyribonuclease V alpha subunit. Neisseria meningitidis (serogroup A). Length = 581 Score = 53.3 bits (127), Expect = 4e-07 Identities = 41/189 (21%), Positives = 66/189 (34%), Gaps = 30/189 (15%) Query: 26 FDVVIIDEAAQALEAECLIPLLLAKK---KFILVGDHKQLPPT-------IKSKKAAAKA 75 FDV++IDEA+ A ++ LL A K + IL+GD QLP + S+K Sbjct: 237 FDVLVIDEASMLDTA-LMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDG 295 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEIC-----RLPSNLFYEGNGLVDISSVARRLE 130 + L L E G SV +P + L + + N + + A Sbjct: 296 ETHQRLAGFLPEHGFSVS-------ANPPVLAQNTAHLSFSHRFGDNSGIGCLARAAVSG 348 Query: 131 YDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPE 190 + A F P + N+ VE +Y + + + Sbjct: 349 DEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI-------S 401 Query: 191 DIGVITPYN 199 DI V+ + Sbjct: 402 DIVVLAAWR 410 >tr:Q9JZ93_NEIMB Exodeoxyribonuclease V, alpha subunit. Neisseria meningitidis (serogroup B). Length = 581 Score = 53.3 bits (127), Expect = 4e-07 Identities = 41/189 (21%), Positives = 66/189 (34%), Gaps = 30/189 (15%) Query: 26 FDVVIIDEAAQALEAECLIPLLLAKK---KFILVGDHKQLPPT-------IKSKKAAAKA 75 FDV++IDEA+ A ++ LL A K + IL+GD QLP + S+K Sbjct: 237 FDVLVIDEASMLDTA-LMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDG 295 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEIC-----RLPSNLFYEGNGLVDISSVARRLE 130 + L L E G SV +P + L + + N + + A Sbjct: 296 ETHQRLAGFLPEHGFSVS-------ANPPVLAQNTAHLSFSHRFGDNSGIGCLARAAVSG 348 Query: 131 YDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPE 190 + A F P + N+ VE +Y + + + Sbjct: 349 DEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI-------S 401 Query: 191 DIGVITPYN 199 DI V+ + Sbjct: 402 DIVVLAAWR 410 >tr:Q9CJI9_LACLA Subunit A of ATP-dependent exonuclease. Lactococcus lactis (subsp. lactis) (Streptococcus lactis). Length = 1203 Score = 53.3 bits (127), Expect = 4e-07 Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 13/179 (7%) Query: 25 KFDVVIIDEAAQ--ALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 +D ++IDE Q + E ++ LL +VGD KQ A GL + Sbjct: 396 HYDEIMIDE-YQDTSHTQERMLELLSNGHNLFMVGDIKQ----SIYGFRLADPGLFLEKY 450 Query: 83 ERLVELGVSV--VRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 + + +RL +R E+ +++F + E Sbjct: 451 KDYAKTENPNQLIRLKENFRSRGEVLTFTNDIFKHLMDEKLGEMTYGKEEALVQGNITDY 510 Query: 141 TP----QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 F L + +EE E + GE + + ++ L+ +GV P+DI ++ Sbjct: 511 PVESEKDFYPELLLYKENTSDEETDESEVRISDGEIKGAAQEIKKLIEAGVEPKDIAIL 569 >tr:Q6LR75_PHOPR Hypothetical protein. Photobacterium profundum (Photobacterium sp. (strain SS9)). Length = 617 Score = 52.1 bits (124), Expect = 8e-07 Identities = 56/287 (19%), Positives = 95/287 (33%), Gaps = 47/287 (16%) Query: 6 AMTCTGAASKRKSLALEKFK--FDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLP 63 + T +S L + K + + DEA Q++ + L K+ + VGD QL Sbjct: 245 PVMSTSLSSVESQFRLMQKKATIGLAMFDEAGQSVNYHVVGLLQRCKQAMV-VGDPIQLE 303 Query: 64 PTIKSK------------KAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI----CR 107 P + + + K G LV + + + + I Sbjct: 304 PVVPVQGEIDRGIASDFIAISNKDGETLWGDCFLVSESSAQLLADRAGPIKALIGQRQVG 363 Query: 108 LPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQ 167 LP L + S+A + YD+ ++ S N ++ + Y Sbjct: 364 LP--LLVHRRCTDPMFSIANSIAYDNKMVIATTPYKWKSVSSGWFNVVESKDSIKRQRYN 421 Query: 168 NPGEAEFVVEIVEYLLRSGVPPEDIGV--ITPYNGQVELIRNI-------------LNSR 212 N EA+ E+V YL+ G+ ITP+ ++N + Sbjct: 422 NHTEADSAFELVRYLVEHQPDMAKGGIYLITPFTHMKNELQNNWKSLYKQPSNKQWMQQS 481 Query: 213 CSLKPVE-----------VSTVDSFQGREKDIIILSLVRSNRNGEIG 248 L E + TV +FQG+E ++I L S G G Sbjct: 482 AQLGGKEGGEVSDFTKDNIGTVHTFQGKEASVVIFCLAASKARGTTG 528 >tr:Q6GKK5_STAAR Hypothetical protein. Staphylococcus aureus (strain MRSA252). Length = 1050 Score = 52.1 bits (124), Expect = 8e-07 Identities = 49/250 (19%), Positives = 92/250 (36%), Gaps = 30/250 (12%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 ++ T A+ K + K D + IDEA QA+ + L + KK + VGD Q+ P Sbjct: 742 VVSTTFASFKSMYGGIPKDFIDYLFIDEAGQAIPQAAVGALFRS-KKVVAVGDPIQIEPV 800 Query: 66 IKSKKA-----AAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 + + + E L + + N QY + + G L Sbjct: 801 VTLESHLIDNIRKNYNVPEYLVSKEASVQSVADNAN-QYGFWKSDATDSNQKTWIGIPLW 859 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNP---GEAEFVVE 177 + + AN + ++P + + + +G S Q E V+E Sbjct: 860 VH-RRCLKPMFTIANQI-AYNNKMVLPSNITNVGKTGWYDVKGNSVQKQFVKEHGEKVLE 917 Query: 178 IVEY-----LLRSGVPPEDIGVITPY---NGQV-ELIRNILNSRCSLKPVEVS------- 221 ++ + P VI+P+ QV +++ L +R ++ +++ Sbjct: 918 LLANDWFEAIKEGKNEPSSF-VISPFSAVQKQVKRILKQQLPTRIDIERTKINQWVDKSI 976 Query: 222 -TVDSFQGRE 230 TV +FQG+E Sbjct: 977 GTVHTFQGKE 986 >tr:Q7V0Z2_PROMP Possible exodeoxyribonuclease V 67 kD polypeptide (EC 3.1.11.5). Prochlorococcus marinus subsp. pastoris (strain CCMP 1378 / MED4). Length = 562 Score = 52.1 bits (124), Expect = 8e-07 Identities = 35/149 (23%), Positives = 53/149 (35%), Gaps = 11/149 (7%) Query: 14 SKRKSLALEKFKFDVVIIDEAAQALE--AECLIPLLLAKKKFILVGDHKQLPPTIKSKKA 71 K L + + D+ IIDE + E ++ LL K ILVGD QLPP Sbjct: 219 HKAIKLKFKLKELDIFIIDEMSMVNIDIIELILDLLAKDCKIILVGDKNQLPPV------ 272 Query: 72 AAKAGLEESLFERLVELGVSV--VRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRL 129 + + LFE + V LN YR +I L + +F + L Sbjct: 273 -KNSSIWNYLFEYSNNEVIKSCIVNLNKTYRNSGDIELLSNLIFNPTDSLFKKKIKELEN 331 Query: 130 EYDSANPGFFPTPQFIVPLSFVDNSGVEE 158 + S + +PL ++ Sbjct: 332 DKKSKEVNILKSINKNIPLGLLNEIKDYI 360 >tr:Q7QWV7_GIALA GLP_203_41128_41724. Giardia lamblia ATCC 50803. Length = 198 Score = 51.0 bits (121), Expect = 2e-06 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 14 SKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAA 73 S S+A E +I++EAA+ E E L+ K IL+GD QLPP I+ A+ Sbjct: 103 STTASIADEGGHRRYLIVEEAARLSEHEFAPFLVAPFDKIILLGDILQLPPLIQDLTIAS 162 Query: 74 KAGLEESLFERLV---ELGVSVVRLNVQYR 100 L+ S+F R+ + V +V L Q R Sbjct: 163 SGALDWSVFHRICYSPRVSVPIVVLEEQSR 192 >tr:Q9KF38_BACHD ATP-dependent DNA helicase. Bacillus halodurans. Length = 747 Score = 50.6 bits (120), Expect = 2e-06 Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 44/231 (19%) Query: 8 TCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK--KKFILVGDHKQLPPT 65 T + + L + KF +++DE A+ ++ +L K +VGD Q Sbjct: 207 TTSLFKKVPEVLEYYQRKFQYILVDEYQDTNRAQYMLVKMLGDRHKNVCVVGDSDQ--SI 264 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSV 125 K + A S E + V+ L YR I + + N + Sbjct: 265 YKWRGADIAN--ILSFEEDYQDAE--VILLEQNYRSTKTILEAANRVI--ENNVKRKPKN 318 Query: 126 ARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRS 185 A GF+ GEA+FVVE + ++ Sbjct: 319 LWTENEQGAKIGFYKADTE------------------------QGEAQFVVEKIREAIQD 354 Query: 186 GVPPEDIGVITPYNGQVELIRNILNSR----------CSLKPVEVSTVDSF 226 G +DI ++ N Q ++ +L E+ V ++ Sbjct: 355 GASYKDIAILYRTNAQSRVMEEMLIKSNIDYNIVGGTKFYDRKEIKDVLAY 405 >tr:Q5JLE9_ORYSA TRNA-splicing endonuclease positive effector-like. Oryza sativa (japonica cultivar-group). Length = 100 Score = 50.6 bits (120), Expect = 2e-06 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Query: 26 FDVVIIDEAAQALEAECLIPLLL-AKKKFILVGD 58 FD++++DEAAQ E E LIPL L + +L+GD Sbjct: 32 FDLLVVDEAAQLKECESLIPLQLPGVRHAVLIGD 65 >tr:Q9CNB5_PASMU RecD. Pasteurella multocida. Length = 657 Score = 48.3 bits (114), Expect = 1e-05 Identities = 32/160 (20%), Positives = 58/160 (36%), Gaps = 13/160 (8%) Query: 27 DVVIIDEAAQALEAEC--LIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEE---SL 81 DV+++DEA+ L+ L K IL+GD QL P + A + + S Sbjct: 293 DVLVVDEASMIDLPLMAKLLQALKPNTKLILLGDENQLSPVEAGEMLGALSEFSQHAYSP 352 Query: 82 FERLVELGVSVVRLNVQYR---MHPEICRLPSNLFYEGNGLVDISSVARR-LEYDSANPG 137 V+ + L + + +CRL + + G+ + + A + + Sbjct: 353 ALTQYLKAVADIELISSDQGSPLRDHLCRLHHSHRFSGDSGIGQLAQAINQGNVEVSWNA 412 Query: 138 FFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVE 177 F + VD V + + S + A VV+ Sbjct: 413 FTH----FNDIEMVDFDQVALLKGDNPSLYSQACAALVVK 448 >tr:Q98PE1_MYCPU EXODEOXYRIBONUCLEASE V ALPHA CHAIN (EC 3.1.11.5). Mycoplasma pulmonis. Length = 694 Score = 47.9 bits (113), Expect = 1e-05 Identities = 50/241 (20%), Positives = 82/241 (34%), Gaps = 33/241 (13%) Query: 25 KFDVVIIDEAAQALEAECLIPLLL--AKKKFILVGDHKQLPPTIKSKKAAAKAGL----- 77 ++++IDE + + L + KK I+VGDH+QLP L Sbjct: 394 HIEILVIDEFSMVTVDLFFLILSTLSSIKKIIIVGDHRQLPAIGAGNLLEDLLELQNISV 453 Query: 78 -EESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANP 136 S R +S LNVQ ++ E N F E N +++ D +N Sbjct: 454 NRLSQIFRNKTKDISENFLNVQKKIPFENNSENVN-FIEANDTNFFDKISKLYFEDLSNY 512 Query: 137 GFFPTPQFIVPLSF-VDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRS---GVPPEDI 192 I F + +N + + + V + + GV +I Sbjct: 513 DVLEKTILIPFNKFETGAHKTNLHIQKKLFKKNDLKNFAIGDKVMQIENNYEKGVYNGEI 572 Query: 193 GVITPYNGQVELIRNILNS----------RCSLKPVE-------VSTVDSFQGREKDIII 235 G+I VE +++ SL+ + +TV FQG E I+I Sbjct: 573 GII---EKFVEKVKDKDKEVYINFGDKKINYSLEELNKNISLAYATTVHKFQGSESKIVI 629 Query: 236 L 236 Sbjct: 630 F 630 >tr:Q89MC7_BRAJA Bll4266 protein. Bradyrhizobium japonicum. Length = 732 Score = 47.9 bits (113), Expect = 2e-05 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 13/75 (17%) Query: 28 VVIIDEAAQALEAECLIPLLL--AKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERL 85 +VI+DEA+ L + +LVGD +QLPP GL LF R Sbjct: 435 LVILDEASMVDLPSLYGLLRRMPQGARLLLVGDERQLPPVGF--------GL---LFHRF 483 Query: 86 VELGVSVVRLNVQYR 100 VE L +R Sbjct: 484 VEDPAVTSTLTTVHR 498 >tr:Q600N7_MYCHY ATP-dependent DNA helicase. Mycoplasma hyopneumoniae. Length = 769 Score = 47.5 bits (112), Expect = 2e-05 Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 34/177 (19%) Query: 23 KFKFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + KFD V++DE ++ L + K + ++VGD Q TI S + A + L + Sbjct: 240 QRKFDFVLVDEFQDTSLVQYLILKIFIKDKTRLVVVGDPDQ---TIYSWRGADPS-LILN 295 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 L + +L V L+ YR I +NL R++ Sbjct: 296 LEQDFPDLQ--TVILDKNYRSTQNILDAANNLIENNQN---------RIKKKLVASSKEK 344 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLL-RSGVPPEDIGVIT 196 + G E E++ ++ L+ ++ V DI ++ Sbjct: 345 IEIHFE--DLANERG--------------AEVEWIYRKIQELITKNKVTYRDIAILA 385 >tr:Q51AY1_ENTHI Hypothetical protein. Entamoeba histolytica HM-1:IMSS. Length = 707 Score = 47.5 bits (112), Expect = 2e-05 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 7/86 (8%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL----AKKKFILVGD 58 +++ +T T L K FD VI+DEA+Q LE E + +L K IL+G+ Sbjct: 611 QIIGVTSTYVTMNFDEL---KQHFDYVIVDEASQMLELELGLLILKIGLNGTKTLILIGN 667 Query: 59 HKQLPPTIKSKKAAAKAGLEESLFER 84 ++ P I +K+ + L E LF+R Sbjct: 668 EEETPVVIHNKEISEYTKLNEGLFQR 693 >tr:Q51AX8_ENTHI Hypothetical protein. Entamoeba histolytica HM-1:IMSS. Length = 684 Score = 47.5 bits (112), Expect = 2e-05 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 7/86 (8%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL----AKKKFILVGD 58 +++ +T T L K FD VI+DEA+Q LE E + +L K IL+G+ Sbjct: 588 QIIGVTSTYVTMNFDEL---KQHFDYVIVDEASQMLELELGLLILKIGLNGTKTLILIGN 644 Query: 59 HKQLPPTIKSKKAAAKAGLEESLFER 84 ++ P I +K+ + L E LF+R Sbjct: 645 EEETPVVIHNKEISEYTKLNEGLFQR 670 >tr:Q6SRA8_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-PH2. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRA9_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-PH1. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRB0_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-YM4. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRB1_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-YM3. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRB2_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-YM2. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRB3_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-YM1. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRB4_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-GD5. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRB5_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-GD4. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRB6_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-GD3. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRB7_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-GD2. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRB8_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-GD1. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRB9_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-KC3. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRC0_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-KC1. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRC1_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-JC2. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRC2_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-HP4. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRC3_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-HP3. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRC4_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-HP2. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6SRC5_CVHSA Replicase 1B (Fragment). SARS coronavirus TW-HP1. Length = 208 Score = 47.5 bits (112), Expect = 2e-05 Identities = 46/213 (21%), Positives = 65/213 (30%), Gaps = 40/213 (18%) Query: 47 LLAKKKFILVGDHKQLP-PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEI 105 L K ++ +GD QLP P K + S RL++ + L R EI Sbjct: 15 RLRAKHYVYIGDPAQLPAPRTLLTKGTLEPEYFNS-VCRLMKTIGPDMFLGTCRRCPAEI 73 Query: 106 CRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 S L Y+ + + SA + S Sbjct: 74 VDTVSALVYDNK--------LKAHKDKSAQCFKMF--------------YKGVITHDVSS 111 Query: 166 YQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDS 225 N + V E L I+PYN Q + IL + TVDS Sbjct: 112 AINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL-------GLPTQTVDS 160 Query: 226 FQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 QG E D +I + + E + R NV Sbjct: 161 SQGSEYDYVIFT-----QTTETAHSCNVNRFNV 188 >tr:Q6N7J7_RHOPA Possible Viral (Superfamily 1) RNA helicase. Rhodopseudomonas palustris. Length = 1253 Score = 47.1 bits (111), Expect = 2e-05 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 26 FDVVIIDEAAQALE--AECLIPLLLAKKKFILVGDHKQLPPT 65 + VI+DE + E LI + + ILVGD +QLPP Sbjct: 722 YRSVIVDECSMLTEDQLSALIDAIEGVDRLILVGDPRQLPPI 763 >tr:Q6Y9B1_BORHE Exodeoxyribonuclease V alpha chain. Borrelia hermsii. Length = 606 Score = 47.1 bits (111), Expect = 2e-05 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 13/154 (8%) Query: 24 FKFDVVIIDEAAQALEAECLIPLLLAKK---KFILVGDHKQLPPTIKSKKAAAKAGLEES 80 +F+++IIDEA+ +A + LL A K K I+ GD QLP + S Sbjct: 299 LEFEIIIIDEASMI-DASTFLKLLKAVKTSTKLIITGDKNQLPSIAG-------GNVYAS 350 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 L +V L +R + EI L ++ E L+D A + Sbjct: 351 LTAIKEISNENVEILKKNFRSNDEINLLAEAIYKEDTDLIDTQLNANKNIILKDINKVNI 410 Query: 141 TPQFIVP--LSFVDNSGVEEEEPEGYSYQNPGEA 172 + + + + S E ++ Sbjct: 411 ENELLNHIKNLYKNISNFELSSLNDKEIESIINP 444 >tr:Q5NVY5_9ARCH ATP-dependent DNA helicase (EC 3.6.1.-). uncultured archaeon. Length = 1075 Score = 47.1 bits (111), Expect = 3e-05 Identities = 45/215 (20%), Positives = 64/215 (29%), Gaps = 44/215 (20%) Query: 25 KFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 KFD VI+DE + E L L K +VGD Q + E++ Sbjct: 263 KFDYVIVDEFQDTNRQQYELLKILAGDGKGITVVGDVNQ-------SIYGFRGAYPENID 315 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEG-NGLVDISSVARRLEYDSANPGFFPT 141 E + L YR I R L D + + T Sbjct: 316 TFKEEYRPATFDLTENYRSTDSILRTAYRLIRNNYQKADDARLLQAFDHREGTRVMLLKT 375 Query: 142 PQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQ 201 QN +A +VE ++ LL GV PE+I V+ Sbjct: 376 LN-----------------------QN-EQARRIVEEIDRLLAEGVAPEEIAVLFRSYSS 411 Query: 202 VELIRNILNSR----------CSLKPVEVSTVDSF 226 + I L R LK E+ T ++ Sbjct: 412 LRPIEAALKQRAIPYQVSTTTGFLKRPEIRTALAY 446 >tr:Q7A890_STAAN SA0089 protein. Staphylococcus aureus (strain N315). Length = 1050 Score = 47.1 bits (111), Expect = 3e-05 Identities = 46/257 (17%), Positives = 92/257 (35%), Gaps = 44/257 (17%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 ++ T A+ K + K D + IDEA QA+ + L + KK + VGD Q+ P Sbjct: 742 VVSTTFASFKSMYGGIPKDFIDYLFIDEAGQAIPQAAVGALYRS-KKVVAVGDPIQIEPV 800 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS-- 123 + LE L + + + L + + + + + D + Sbjct: 801 V---------TLESHLIDNIRKNYHVPEYLVSKEASVQSVADNANQYGFWKSDATDSNQK 851 Query: 124 ----------SVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNP---G 170 + + AN + ++P + + +G + Q Sbjct: 852 TWIGIPLWVHRRCLKPMFTIANQI-AYNNKMVLPSNITKVGKTGWYDVKGNAVQKQFVKE 910 Query: 171 EAEFVVEI-----VEYLLRSGVPPEDIGVITPYNG-Q---VELIRNILNSRCSLKPVEVS 221 E VV + +E + P VI+P++ Q +++ L +R ++ +++ Sbjct: 911 HGEKVVGLLADDWIEAIKEGKNEPSSF-VISPFSAVQQQIKRMLKQQLPTRIDIERTKIN 969 Query: 222 --------TVDSFQGRE 230 TV +FQG+E Sbjct: 970 QWVDKSIGTVHTFQGKE 986 >tr:Q99XB9_STAAM Hypothetical protein. Staphylococcus aureus (strain Mu50 / ATCC 700699). Length = 1050 Score = 47.1 bits (111), Expect = 3e-05 Identities = 46/257 (17%), Positives = 92/257 (35%), Gaps = 44/257 (17%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 ++ T A+ K + K D + IDEA QA+ + L + KK + VGD Q+ P Sbjct: 742 VVSTTFASFKSMYGGIPKDFIDYLFIDEAGQAIPQAAVGALYRS-KKVVAVGDPIQIEPV 800 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS-- 123 + LE L + + + L + + + + + D + Sbjct: 801 V---------TLESHLIDNIRKNYHVPEYLVSKEASVQSVADNANQYGFWKSDATDSNQK 851 Query: 124 ----------SVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNP---G 170 + + AN + ++P + + +G + Q Sbjct: 852 TWIGIPLWVHRRCLKPMFTIANQI-AYNNKMVLPSNITKVGKTGWYDVKGNAVQKQFVKE 910 Query: 171 EAEFVVEI-----VEYLLRSGVPPEDIGVITPYNG-Q---VELIRNILNSRCSLKPVEVS 221 E VV + +E + P VI+P++ Q +++ L +R ++ +++ Sbjct: 911 HGEKVVGLLADDWIEAIKEGKNEPSSF-VISPFSAVQQQIKRMLKQQLPTRIDIERTKIN 969 Query: 222 --------TVDSFQGRE 230 TV +FQG+E Sbjct: 970 QWVDKSIGTVHTFQGKE 986 >tr:Q5HJS6_STAAC Hypothetical protein. Staphylococcus aureus (strain COL). Length = 1050 Score = 47.1 bits (111), Expect = 3e-05 Identities = 46/257 (17%), Positives = 92/257 (35%), Gaps = 44/257 (17%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 ++ T A+ K + K D + IDEA QA+ + L + KK + VGD Q+ P Sbjct: 742 VVSTTFASFKSMYGGIPKDFIDYLFIDEAGQAIPQAAVGALYRS-KKVVAVGDPIQIEPV 800 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS-- 123 + LE L + + + L + + + + + D + Sbjct: 801 V---------TLESHLIDNIRKNYHVPEYLVSKEASVQSVADNANQYGFWKSDATDSNQK 851 Query: 124 ----------SVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNP---G 170 + + AN + ++P + + +G + Q Sbjct: 852 TWIGIPLWVHRRCLKPMFTIANQI-AYNNKMVLPSNITKVGKTGWYDVKGNAVQKQFVKE 910 Query: 171 EAEFVVEI-----VEYLLRSGVPPEDIGVITPYNG-Q---VELIRNILNSRCSLKPVEVS 221 E VV + +E + P VI+P++ Q +++ L +R ++ +++ Sbjct: 911 HGEKVVGLLADDWIEAIKEGKNEPSSF-VISPFSAVQQQIKRMLKQQLPTRIDIERTKIN 969 Query: 222 --------TVDSFQGRE 230 TV +FQG+E Sbjct: 970 QWVDKSIGTVHTFQGKE 986 >tr:Q6GD29_STAAS Hypothetical protein. Staphylococcus aureus (strain MSSA476). Length = 1050 Score = 47.1 bits (111), Expect = 3e-05 Identities = 46/257 (17%), Positives = 92/257 (35%), Gaps = 44/257 (17%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 ++ T A+ K + K D + IDEA QA+ + L + KK + VGD Q+ P Sbjct: 742 VVSTTFASFKSMYGGIPKDFIDYLFIDEAGQAIPQAAVGALYRS-KKVVAVGDPIQIEPV 800 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS-- 123 + LE L + + + L + + + + + D + Sbjct: 801 V---------TLESHLIDNIRKNYHVPEYLVSKEASVQSVADNANQYGFWKSDATDSNQK 851 Query: 124 ----------SVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNP---G 170 + + AN + ++P + + +G + Q Sbjct: 852 TWIGIPLWVHRRCLKPMFTIANQI-AYNNKMVLPSNITKVGKTGWYDVKGNAVQKQFVKE 910 Query: 171 EAEFVVEI-----VEYLLRSGVPPEDIGVITPYNG-Q---VELIRNILNSRCSLKPVEVS 221 E VV + +E + P VI+P++ Q +++ L +R ++ +++ Sbjct: 911 HGEKVVGLLADDWIEAIKEGKNEPSSF-VISPFSAVQQQIKRMLKQQLPTRIDIERTKIN 969 Query: 222 --------TVDSFQGRE 230 TV +FQG+E Sbjct: 970 QWVDKSIGTVHTFQGKE 986 >tr:Q8NYU5_STAAW MW0068 protein. Staphylococcus aureus (strain MW2). Length = 1050 Score = 46.7 bits (110), Expect = 3e-05 Identities = 46/257 (17%), Positives = 92/257 (35%), Gaps = 44/257 (17%) Query: 6 AMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 ++ T A+ K + K D + IDEA QA+ + L + KK + VGD Q+ P Sbjct: 742 VVSTTFASFKSMYGGIPKDFIDYLFIDEAGQAIPQAAVGALYRS-KKVVAVGDPIQIEPV 800 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS-- 123 + LE L + + + L + + + + + D + Sbjct: 801 V---------TLESHLIDNIRKNYHVPEYLVSKEASVQSVADNANQYGFWKSDATDSNQK 851 Query: 124 ----------SVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNP---G 170 + + AN + ++P + + +G + Q Sbjct: 852 TWIGIPLWVHRRCLKPMFTIANQI-AYNNKMVLPSNITKVGKTGWYDVKGNAVQKQFVKE 910 Query: 171 EAEFVVEI-----VEYLLRSGVPPEDIGVITPYNG-Q---VELIRNILNSRCSLKPVEVS 221 E VV + +E + P VI+P++ Q +++ L +R ++ +++ Sbjct: 911 HGEKVVGLLADDWIEAIKEGKNEPSSF-VISPFSAVQQQIKRMLKQQLPTRIDIERTKIN 969 Query: 222 --------TVDSFQGRE 230 TV +FQG+E Sbjct: 970 QWVDKSIGTVHTFQGKE 986 >tr:Q6MIL6_BDEBA Probable exonuclease RexA. Bdellovibrio bacteriovorus. Length = 1007 Score = 46.7 bits (110), Expect = 3e-05 Identities = 39/168 (23%), Positives = 62/168 (36%), Gaps = 25/168 (14%) Query: 31 IDEAAQALEA---ECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVE 87 +DE Q E L L+ +K +VGD +Q +I + A E + E + Sbjct: 323 VDE-YQDTSPVQVELLRHLV-GEKPVFIVGDPQQ---SIYLFRGARSEVFREKVAEIEAQ 377 Query: 88 LGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVP 147 G V+L V YR PE+ ++ F R +A P+ Sbjct: 378 QGDVQVKL-VNYRSSPEVLEFFNHYF------------TRLGSQFAAMTPDEKKPKKGPE 424 Query: 148 LSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + V E + + S E V ++ LL++G PE I V+ Sbjct: 425 VPVVQVVLSETGDEDETS----AEILATVARIQELLQAGTSPEQICVL 468 >tr:Q8ES83_OCEIH ATP-dependent DNA helicase (EC 3.6.1.-). Oceanobacillus iheyensis. Length = 741 Score = 46.4 bits (109), Expect = 5e-05 Identities = 42/242 (17%), Positives = 76/242 (31%), Gaps = 55/242 (22%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLLLAKK--KFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + +F + +DE A+ + LA + +VGD Q + + A G + Sbjct: 214 QRRFQYIHVDEYQDTNHAQYYLVKQLASRFQNLCVVGDSDQ--SIYRWRGA--DIGNILT 269 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 + V L YR I + + + +G Sbjct: 270 FEKDYPS--ARTVLLEQNYRSTKSILQAANQVISNNSG----------------RKPKNL 311 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLR-SGVPPEDIGVITPYN 199 I + G E+E EA FV + ++ L+R + P D+ ++ N Sbjct: 312 WTDNIDGKNLNYYQGGTEQE----------EALFVTDKIQQLIRENEYKPSDVAILYRTN 361 Query: 200 GQVELIRNILNSRC----------SLKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGF 249 Q I + L E+ KD+I + +N + +I F Sbjct: 362 AQSRAIEDTLLKSGINYQMVGGMKFYDRKEI----------KDMIAYLRLITNPDDDISF 411 Query: 250 LR 251 +R Sbjct: 412 VR 413 >tr:Q6AGE7_LEIXX Hypothetical protein. Leifsonia xyli (subsp. xyli). Length = 1271 Score = 46.4 bits (109), Expect = 5e-05 Identities = 55/245 (22%), Positives = 83/245 (33%), Gaps = 48/245 (19%) Query: 26 FDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEE------ 79 FDVV++ +A A AE + L A K+ + GD P+ Sbjct: 862 FDVVVVVDAGAASLAENVPVLRRA-KQVVAFGDPVTQTPSRFDIGVHEYGSASAGADVDG 920 Query: 80 ----SLFERLVELGVSVVRLNVQYRM-HPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 S RL EL + V L+ YR ++ L + FY G I S+ Y Sbjct: 921 LNADSALARLSEL-LPVYTLSRSYRAGGEDLAELVNRRFYGGK----IDSLPWAGTYLGH 975 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGV--PPEDI 192 + D VE + E V +V+ +LR V P E + Sbjct: 976 GSLSLHYVTGGQGMPDSDTGAVESTDAE------------VARVVDLVLRHAVERPRESL 1023 Query: 193 GVITPYNGQVELIR------NILNSRCSL---------KPVEVSTVDSFQGREKDIIILS 237 VIT + +R N R L +P V T+D G+ +D ++ S Sbjct: 1024 MVITA--SERHAVRVNQAVLNAFAKRTELADFILGDRSEPFTVVTLDQSVGQSRDRVVFS 1081 Query: 238 LVRSN 242 + Sbjct: 1082 IGYGR 1086 >tr:Q7VRF0_CANBF Exonuclease V, alpha chain (EC 3.1.11.5). Candidatus Blochmannia floridanus. Length = 640 Score = 46.0 bits (108), Expect = 6e-05 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 17/117 (14%) Query: 22 EKFKFDVVIIDEAAQALEAECLIPLLLA---KKKFILVGDHKQLPPT---IKSKKAAAKA 75 D +IIDEA+ L L++ K IL+GDH QL P + + Sbjct: 282 LNTNIDCLIIDEASMIS-LSLLSQLIMHLSNNTKVILIGDHHQLHPIESGSVFQDICQFS 340 Query: 76 GLEESLFERLVELGVSVVRL---NVQYRMH-------PEICRLPSNLFYEGNGLVDI 122 S+ ++ ++ L N Y + +IC N + N + Sbjct: 341 NFGYSIQQQEKLKKLTNHTLSMNNSSYTQNNYCNTIADKICIFKKNYRFHKNSGIIH 397 >tr:Q8RCE3_THETN ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member. Thermoanaerobacter tengcongensis. Length = 765 Score = 46.0 bits (108), Expect = 6e-05 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 14/100 (14%) Query: 16 RKSLALEKFKFDVVIIDEAAQALEAECLIPLLL---AKKKFILVGDHKQLPPTIKSKKAA 72 + K+DV+IIDEA+ + + LL A + ILVGD QLP Sbjct: 435 FNKNEKDPLKYDVIIIDEASMV-DILLMNALLKAIPAGSRLILVGDADQLPSV------- 486 Query: 73 AKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 G L + + V V+RL +R E + + Sbjct: 487 ---GAGNVLRDIIDSGIVKVIRLKEIFRQQKESLIVVNAH 523 >tr:Q64UX0_BACFR Hypothetical protein. Bacteroides fragilis. Length = 1023 Score = 46.0 bits (108), Expect = 7e-05 Identities = 48/273 (17%), Positives = 95/273 (34%), Gaps = 59/273 (21%) Query: 4 VVAMTCTGAASK-RKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQL 62 +V + + AS R ++ + +DEA QA+ + + K+ ++VGD Q+ Sbjct: 719 IVPVVSSTFASIQRMFSQMKTGTIPWLFVDEAGQAVPQAAAGAIWRS-KRAVIVGDPFQI 777 Query: 63 PPTI--------------KSKKAAAKAGLE-ESLFERLVELGVSVVR------LNVQYRM 101 P + K + L +S+ +R G L V R Sbjct: 778 EPVVTIPEQIVNNISHHFGLDKTQIQTSLSVQSMADRANPYGWITNDTWTGSPLRVHRRC 837 Query: 102 HPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEP 161 + + + + Y G +S GF + +V G+ + Sbjct: 838 VDPMFSIANEIAYNGMM---YNSTLAESSQLFMRNGFLQVEGKVSGRHYVPEQGILIRQ- 893 Query: 162 EGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYN-----GQVELIRNILNSRCSLK 216 +++ + +L D+ VI+P++ + EL + I + + K Sbjct: 894 ------------MIIDEIHHLQDLP----DLFVISPFSEIPPILKKELRQPIKQALATYK 937 Query: 217 PVE-----------VSTVDSFQGREKDIIILSL 238 +E + TV +FQG++ +IL L Sbjct: 938 SIEDNELKKWLDAHIGTVHTFQGKQAAGVILCL 970 >tr:Q9EUN8_CORGL Transfer protein homolog TraA. Corynebacterium glutamicum (Brevibacterium flavum). Length = 1160 Score = 45.6 bits (107), Expect = 7e-05 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%) Query: 28 VVIIDEAAQALEAECLIPLLL---AKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 V+++DEA E + L L A + +LVGD Q A+ GL +L Sbjct: 546 VIVVDEAGMVSTPEMVRVLELAHVADARVVLVGDPYQYGAV------KARGGLLSTLAHE 599 Query: 85 LVELGVSVVRLNVQYRMHPEICRLPSNL 112 L + V L +R H E R+ S Sbjct: 600 LPD----AVELREVFRQHDEKERVASKR 623 >tr:Q6NIP2_CORDI Putative DNA helicase II (EC 3.6.1.-). Corynebacterium diphtheriae. Length = 683 Score = 45.6 bits (107), Expect = 7e-05 Identities = 35/166 (21%), Positives = 54/166 (32%), Gaps = 31/166 (18%) Query: 55 LVGDHKQLPPTIKS-KKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLF 113 +VGD Q TI S A+ L F R +VV+L YR P+I L + + Sbjct: 244 VVGDANQ---TIYSFTGASPDYLLG---FSRKYPH-ATVVKLQRDYRSTPQITDLANRVI 296 Query: 114 YEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAE 173 + G + + + + F P EA Sbjct: 297 DQAVGRIAGTRLELEGMRTAGPQPEF-----------------------QEFSDEPAEAH 333 Query: 174 FVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVE 219 V ++ LL GVP +I ++ N Q L+ + V Sbjct: 334 AVALKIKQLLAQGVPASEIAILYRINAQSATFEQALDDAGIVYQVR 379 >tr:Q6AJ72_DESPS Probable ATP-dependent DNA helicase, UvrD/REP family. Desulfotalea psychrophila. Length = 733 Score = 45.6 bits (107), Expect = 8e-05 Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 34/177 (19%) Query: 21 LEKFKFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLE 78 + +F V++DE ++A+ + L ++VGD Q +I S + A + Sbjct: 226 MMSHRFRYVMVDEYQDTNLIQADIIRLLASEHSNVMVVGDDSQ---SIYSFRGADFYNIM 282 Query: 79 ESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGF 138 E G +++L YR I L ++L +Y + Sbjct: 283 RFPKEF---PGAKLIKLEENYRSTQPILSLTNDLI-----------ANASEKYTKSLHSN 328 Query: 139 FPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 Q + D EA F++ V+ +R G+ P +I V+ Sbjct: 329 IKGEQRPIVYGARDEQ---------------AEATFILARVQQHIRDGIDPSEIAVL 370 >tr:Q6F0P9_MESFL Repair endonuclease ATP-dependent DNA helicase. Mesoplasma florum (Acholeplasma florum). Length = 723 Score = 45.6 bits (107), Expect = 8e-05 Identities = 37/204 (18%), Positives = 67/204 (32%), Gaps = 34/204 (16%) Query: 17 KSLALEKFKFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAK 74 ++L + ++D V++DE L+ + + L K +VGD Q TI S + AK Sbjct: 207 EALEKWRNRYDYVMVDEFQDTNDLQFDLIKFLTRDKNNLTVVGDPDQ---TIYSWR-GAK 262 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 + + + + LN YR +I L ++ R + Sbjct: 263 VDIILNFTKSFS--NGVSITLNQNYRSTQKILDLANDFINNNKN--------REAKDIFT 312 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGV 194 N P S D EA +V ++ L++ G +DI V Sbjct: 313 NNATGDLPIIKECESRND------------------EARYVTLKIKELIKDGYEYKDIFV 354 Query: 195 ITPYNGQVELIRNILNSRCSLKPV 218 + N + + + Sbjct: 355 LYRLNAWSQEFEKEFQNNKIPFQL 378 >tr:Q5NF54_FRATT Exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5). Francisella tularensis (subsp. tularensis). Length = 622 Score = 45.6 bits (107), Expect = 8e-05 Identities = 50/263 (19%), Positives = 91/263 (34%), Gaps = 48/263 (18%) Query: 13 ASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLA---KKKFILVGDHKQLPPTIKSK 69 ++ K K FDV+I+DEA+ L+ I L+ A K IL+GD QLP Sbjct: 311 STYVKYNQQSKAPFDVIIVDEAS-MLDMNIFIKLIRAVADNTKLILIGDTNQLPSV---- 365 Query: 70 KAAAKAGLEESLFERLVELGVSVV--RLNVQYRMHPEICRLPS-------------NLFY 114 +AG + F ++ L YR I L + N Sbjct: 366 ----EAGSLLANFTHDKYGSITPYTTLLIKNYRSQQYINNLAASVLKGDVNIDSQQNENI 421 Query: 115 EGNGLVDISSVARRLEYDSANPGFFPTP--------QFIVPLSFVD-NSGVEEEEPE-GY 164 + + L ++ R + +F + ++ + G ++ + Sbjct: 422 KFHSLRNLDIYLREYAKRYSQLEKCRDYKEALTELNKFRILVANKNLEIGTDKLNQKIEK 481 Query: 165 SYQNPGEAEF---VVEIVEYLLRSGVPPEDIGVITP--------YNGQVELIRNILNSRC 213 P ++ + ++ I + G+ D+G++ P Y + LN Sbjct: 482 FMSKPIDSNYKGKLIMITQNSYSLGLFNGDVGIMWPDDTGKLRAYFDGKDAKAFSLNMLP 541 Query: 214 SLKPVEVSTVDSFQGREKDIIIL 236 + V T+ QG E D I++ Sbjct: 542 KYESVYAMTIHKTQGSEFDEIVI 564 >tr:Q5WF16_BACSK ATP-dependent DNA helicase, UvrD/REP family. Bacillus clausii (strain KSM-K16). Length = 763 Score = 45.6 bits (107), Expect = 9e-05 Identities = 45/230 (19%), Positives = 76/230 (33%), Gaps = 47/230 (20%) Query: 25 KFDVVIIDEAAQALEA--ECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 +F ++IDE E + L + ++ +VGD Q + + S Sbjct: 349 RFAYLLIDEFQDINPVQFEIVKLLAMPQRNICVVGDDDQ----SIYRFRGSDPRFIRSFT 404 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTP 142 E + L YR I + + E ++ + VA+ Sbjct: 405 AHYPE--AKTIHLVENYRSSHPIIASANRVIAENRTRLEKTLVAQHTSDQL--------- 453 Query: 143 QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQV 202 P F EEE EA +VE ++ L+ G+ P +I V+ + V Sbjct: 454 ----PYLFFP--YNEEE-----------EATMIVEEIKRLIGKGICPSEIAVLYRTSTSV 496 Query: 203 ELIRNILNSRCSLKPVEVSTVDSFQG----REKDII--ILSLVRSNRNGE 246 + + L +E QG E+ + LS +R RN E Sbjct: 497 RALVDRLVDTTLPFSLE-------QGFACFYERPFVRRALSFLRIGRNEE 539 >tr:Q7U879_SYNPX Conserved hypothetical (EC 3.1.11.5). Synechococcus sp. (strain WH8102). Length = 487 Score = 45.2 bits (106), Expect = 1e-04 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 14/82 (17%) Query: 28 VVIIDEAAQALEAECLIPLLLA---KKKFILVGDHKQLPPT------IKSKKAAAKAGLE 78 +V+IDEA+ I L A K + + VGD QLPP + S + A A LE Sbjct: 126 LVLIDEASMVDSTLLGIALQCAHPFKTRLVFVGDPAQLPPVGEDSSPVFSMQRACAATLE 185 Query: 79 ESLFERLVELGVSVVRLNVQYR 100 E +V V++L + R Sbjct: 186 E-----VVRHQGPVLQLASRLR 202 >tr:Q6BV52_DEBHA Similar to tr|Q8CFQ3 Mus musculus and wi|NCU07866.1 Neurospora crassa NCU07866.1. Debaryomyces hansenii (Yeast) (Torulaspora hansenii). Length = 922 Score = 44.8 bits (105), Expect = 1e-04 Identities = 41/198 (20%), Positives = 64/198 (32%), Gaps = 44/198 (22%) Query: 23 KFKFD-VVIIDEAAQALEAECLIPL--LLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEE 79 + KFD +V I E + L+P+ ++ +++GD Sbjct: 658 QTKFDSIVCIGENT--SQFNWLLPMINNAYLRRIVVLGD------------------FSR 697 Query: 80 SLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFF 139 S R L V ++L L F + + + +AN GF Sbjct: 698 SNNSRWRYLSVPPLKLRK---------VLVREEFLQYYNGQYNNELVSAYTGAAANGGFK 748 Query: 140 PTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYN 199 T Q I E N EAE+ V + +Y+ G P I +I Sbjct: 749 ETHQIIPVDM----------ESNESVSVN--EAEYSVALYQYMRLLGYPAHKISIIAMTV 796 Query: 200 GQVELIRNILNSRCSLKP 217 Q LI IL+ +C Sbjct: 797 YQKVLIEEILSIKCGHSE 814 >tr:Q8V0G6_9NIDO ORF1b polyprotein (Fragment). Yellow head virus. Length = 2628 Score = 44.4 bits (104), Expect = 2e-04 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 4/92 (4%) Query: 27 DVVIIDEAAQALEAECLIPL-LLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERL 85 + +IIDE + A + + + L + I GD QL T + Sbjct: 1565 EYMIIDEFSMATDIQIYSAICHLNPRHVIFTGDPCQLS-TQHVYNTDVYHSNIIN--NHQ 1621 Query: 86 VELGVSVVRLNVQYRMHPEICRLPSNLFYEGN 117 + L++ YRM +I S FY G Sbjct: 1622 LTGKFPTEFLDITYRMGSKINDFISENFYYGK 1653 >tr:Q9WPZ7_9NIDO ORF1ab replicase polyprotein (Fragment). Gill-associated virus. Length = 2646 Score = 44.4 bits (104), Expect = 2e-04 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 4/92 (4%) Query: 27 DVVIIDEAAQALEAECLIPL-LLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERL 85 + +IIDE + A + + + L + I GD QL T + Sbjct: 1583 EYMIIDEFSMATDIQIYSAICHLNPRHIIFTGDPCQLS-TQHVYNTDVYHSNIIN--NHQ 1639 Query: 86 VELGVSVVRLNVQYRMHPEICRLPSNLFYEGN 117 + L++ YRM +I S FY+G Sbjct: 1640 LTGKFPTEFLDITYRMGSKINDFISENFYDGK 1671 >tr:Q84GD9_CORGL TraA. Corynebacterium glutamicum (Brevibacterium flavum). Length = 1164 Score = 44.4 bits (104), Expect = 2e-04 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 15/89 (16%) Query: 28 VVIIDEAAQALEAECLIPLLL---AKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 V+++DEA E + L L A + +LVGD Q A+ GL +L Sbjct: 546 VIVVDEAGMVSTPEMVRVLELAHAADARVVLVGDPYQYGAV------KARGGLLATLA-- 597 Query: 85 LVELGVS-VVRLNVQYRMHPEICRLPSNL 112 V V L +R H E R S Sbjct: 598 ---HEVPDAVELREVFRQHDEKERAASKR 623 >tr:Q8VVJ4_CORGL TraA protein. Corynebacterium glutamicum (Brevibacterium flavum). Length = 1164 Score = 44.4 bits (104), Expect = 2e-04 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 15/89 (16%) Query: 28 VVIIDEAAQALEAECLIPLLL---AKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 V+++DEA E + L L A + +LVGD Q A+ GL +L Sbjct: 546 VIVVDEAGMVSTPEMVRVLELAHAADARVVLVGDPYQYGAV------KARGGLLATLA-- 597 Query: 85 LVELGVS-VVRLNVQYRMHPEICRLPSNL 112 V V L +R H E R S Sbjct: 598 ---HEVPDAVELREVFRQHDEKERAASKR 623 >tr:Q8FRG7_COREF Putative ATP-dependent DNA helicase. Corynebacterium efficiens. Length = 694 Score = 44.0 bits (103), Expect = 2e-04 Identities = 34/165 (20%), Positives = 52/165 (31%), Gaps = 29/165 (17%) Query: 55 LVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFY 114 +VGD Q TI S F R E +VV+L YR P++ L + + Sbjct: 261 VVGDANQ---TIYS--FTGATPHYLLNFSRTYE-NATVVKLQRDYRSTPQVTDLANTVIA 314 Query: 115 EGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEF 174 + G V + + + F + P EA Sbjct: 315 QARGRVAGTRLELQGMRAPGPEPEFTSYDDE-----------------------PTEARE 351 Query: 175 VVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVE 219 V + LL GV +I V+ N Q + L+ + V Sbjct: 352 VAGKILTLLDQGVAASEIAVLYRINAQSAVFEQALSDAGIVYQVR 396 >tr:Q8RMJ7_CORDI TraA. Corynebacterium diphtheriae. Length = 1116 Score = 43.7 bits (102), Expect = 3e-04 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 11/80 (13%) Query: 28 VVIIDEAAQALEAECLIPLLLAK---KKFILVGDHKQLPPT--------IKSKKAAAKAG 76 VV++DEA + + L A + + VGD +Q S + Sbjct: 544 VVVVDEAGMVSNPDTIRVLETATAAGARVVFVGDPEQYSAVKARSGLLATLSHELPDAVE 603 Query: 77 LEESLFERLVELGVSVVRLN 96 L E +R + L Sbjct: 604 LREVFRQRDAGEREASKWLR 623 >tr:Q6FAS6_ACIAD Putative helicase. Acinetobacter sp. (strain ADP1). Length = 570 Score = 43.7 bits (102), Expect = 3e-04 Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 13/149 (8%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKK---------KFILVGDHKQLPPTIKSKKAAAKA 75 V+IIDE + + + +L K + I+ GD QLPP K+ + Sbjct: 96 QVLIIDEISMLHAKQLNLVNQVLKYFKESDEAFGGIQVIVAGDFFQLPPVGKNDERNRDK 155 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 S VE V L Q+R EI N N + + Sbjct: 156 FCFMSDA--WVEAKFRVCYLTEQHRQDDEILNQILNAIRAQNIQNEHKHALLTSRQHNIG 213 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGY 164 F + + ++ + E E E + Sbjct: 214 ETFTRLYTHNMDVDNINFQHLNEIENESH 242 >tr:Q82SY0_NITEU UvrD/REP helicase. Nitrosomonas europaea. Length = 1155 Score = 43.7 bits (102), Expect = 3e-04 Identities = 39/210 (18%), Positives = 68/210 (32%), Gaps = 30/210 (14%) Query: 22 EKFKFDVVIIDE--AAQALEAECLIPLLLA-----KKKFILVGDHKQLPPTIKSKKA--A 72 ++ +++DE + +AE L L + LVGD Q + ++A Sbjct: 424 LDYRIHHLLVDEFQDTSSSQAELLQRLTAGWQTGDGRTLFLVGDPMQ--SIYRFRQAEVG 481 Query: 73 AKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYD 132 + +S + +++ +RL+V +R I + F D S Sbjct: 482 LFLDIRDSGYFGQIQMRF--LRLSVNFRSQSGIVEWVNRYFPRILPDTDSVSTGAVSYAS 539 Query: 133 SANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY-SYQNPGEAEFVVEIVEYLLRSGVPPED 191 S ++F S E Y + EAE V IV + P Sbjct: 540 S--------------VAFHAASSGEAVRIYPYLQKDDRAEAEQVGAIVAQARAAQ-PDGR 584 Query: 192 IGVITPYNGQVELIRNILNSRCSLKP-VEV 220 I V+ + I L + VE+ Sbjct: 585 IAVLVRNRSHLASIVVHLRRKGLRFQAVEI 614 >tr:Q67KK1_SYMTH Exodeoxyribonuclease-like protein. Symbiobacterium thermophilum. Length = 1196 Score = 43.7 bits (102), Expect = 3e-04 Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 11/76 (14%) Query: 30 IIDEAAQALEAECLIPLLLA-----KKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 IIDEA+ E + L A ++ I VGD QLPP + A L L R Sbjct: 679 IIDEASMLN-LELVAALCRAIHWGSVQRVIFVGDTNQLPPI---GRGKVFADLIAWL--R 732 Query: 85 LVELGVSVVRLNVQYR 100 SV L R Sbjct: 733 EAGFDQSVGMLTTNLR 748 >tr:Q73UR9_MYCPA UvrD2. Mycobacterium paratuberculosis. Length = 703 Score = 43.7 bits (102), Expect = 3e-04 Identities = 35/167 (20%), Positives = 49/167 (29%), Gaps = 33/167 (19%) Query: 55 LVGDHKQLPPTIKSKKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNL 112 +VGD Q TI S G +VVRL YR P++ L + + Sbjct: 260 VVGDANQ---TIYS-----FTGASPRFLLDFSRRFPDATVVRLERDYRSTPQVVSLANQV 311 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 G V S + + F P EA Sbjct: 312 IAAARGRVAGSKLHLVGQRPPGPVPTFHEHSDE-----------------------PAEA 348 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVE 219 V + + L+ SG P +I V+ N Q E+ L V Sbjct: 349 AAVAKSIARLIESGTPASEIAVLYRVNAQSEIYEEALTEAGIPYQVR 395 >tr:Q7VRE9_CANBF Exonuclease V, beta chain (EC 3.1.11.5). Candidatus Blochmannia floridanus. Length = 1208 Score = 43.7 bits (102), Expect = 3e-04 Identities = 33/180 (18%), Positives = 53/180 (29%), Gaps = 26/180 (14%) Query: 49 AKKKFILVGDHKQLPPTIKSKKAAAKAGL--EESLFERLVELGVSVVRLNVQYRMHPEIC 106 KK IL+GD KQ + A + +SL LN+ +R P + Sbjct: 409 QKKCLILIGDPKQ--AIYGFRGANIFTYMQIRQSL--------HYKYYLNINWRSSPGMV 458 Query: 107 RLPSNLFYEGNGLVDISSVARRLEYDSANPGF-FPTPQFIVPLSFVDNSGVEEEEPEGYS 165 + LF N V N F + E Y Sbjct: 459 NAINQLFQVPNPFVFKDISFIPSIPSYKNNKHQFLIHNQLQSPLCFWLYSHECITMNNYK 518 Query: 166 YQNPGEAEFVVEIVEYLLRSG-------------VPPEDIGVITPYNGQVELIRNILNSR 212 E V++ + Y + + + DI ++ + + LIR+ L R Sbjct: 519 TIMAQECSIVLQNLLYNIHNKTAWLENNICKKKILQTSDIAILVRNHSEASLIRSELLKR 578 >tr:Q49204_MYCGE Hypothetical protein (Fragment). Mycoplasma genitalium. Length = 99 Score = 43.3 bits (101), Expect = 4e-04 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 15/74 (20%) Query: 175 VVEIVEYLLRSGVPPEDIGVITPYNGQVELI---------------RNILNSRCSLKPVE 219 VV+ +E L + + +GVI Q +LI R N + + Sbjct: 26 VVQRLEQLTTTNDYKKSLGVICFNKNQADLIEYLIDKQNNPLLNEWRERQNDVGEYEGLF 85 Query: 220 VSTVDSFQGREKDI 233 V +++ QG E+DI Sbjct: 86 VKNIENVQGDERDI 99 >tr:Q5X053_LEGPL Hypothetical protein. Legionella pneumophila (strain Lens). Length = 881 Score = 43.3 bits (101), Expect = 4e-04 Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 8/87 (9%) Query: 1 EAKVVAMTCTGAASKRKSLA--LEKFKFDVVIIDEAAQA---LEAECLIPLLLAKKKFIL 55 + + T A+ K L+ DV+IIDEA A + A K IL Sbjct: 395 QTDTGIASSTIASLTYKMANQQLKLNSNDVLIIDEAGMVDFSSMALLIREAKKAGSKVIL 454 Query: 56 VGDHKQLPPTIK---SKKAAAKAGLEE 79 VGD QL P K + AA G E Sbjct: 455 VGDPDQLKPIHKGEIFRGIAALTGYIE 481 >tr:Q67L69_SYMTH DNA helicase-like protein. Symbiobacterium thermophilum. Length = 978 Score = 43.3 bits (101), Expect = 4e-04 Identities = 41/210 (19%), Positives = 81/210 (38%), Gaps = 36/210 (17%) Query: 5 VAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHK-QLP 63 + + + ++ E FD+ ++D+A + +P+L K+ +L+GD +P Sbjct: 564 FPVVVSPTLAVAGTVPNEPEMFDLFVLDDAERVPIPP-FLPVLYRAKRAVLLGDEDGVMP 622 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS 123 P + L RL+ Q H + + GL Sbjct: 623 P----------SSLGPDEDSRLLG----------QVEEHNLAAFAYTEVSPLHRGL---- 658 Query: 124 SVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY---QNPGEAEFVVEIVE 180 A G + P+ + F++ + P + Q+P EA + V Sbjct: 659 --AVAGPQAQRLRGSYYAPED---VQFINVDDGQTLFPAPAAVSQAQSPLEARAALLQVT 713 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILN 210 LL +G+ +D+ + +P++GQV L+R +L+ Sbjct: 714 RLLSAGL--QDVALCSPFSGQVHLLRQLLS 741 >tr:Q5YWP7_NOCFA Putative RecD protein. Nocardia farcinica. Length = 628 Score = 43.3 bits (101), Expect = 4e-04 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 19 LALEKFKFDVVIIDEAAQA--LEAECLIPLLLAKKKFILVGDHKQLPPT 65 + +DV+++DE + L+ L + +LVGD QL Sbjct: 280 NEFNRLPYDVIVVDETSMVSLTMMSSLLAALRPDTRLVLVGDPDQLASV 328 >tr:Q8TND2_METAC ATP-dependent DNA helicase. Methanosarcina acetivorans. Length = 612 Score = 43.3 bits (101), Expect = 4e-04 Identities = 48/222 (21%), Positives = 80/222 (36%), Gaps = 47/222 (21%) Query: 22 EKFKFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEE 79 + +I+DE ++ E + L ++ +V D Q A + Sbjct: 258 LNDTYTHIIVDEFQDTNYVQFELIKHLTAGEQNITVVADANQ-------SIYAFRGAYSN 310 Query: 80 SLFERLVELGVSVVR---LNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANP 136 ++ E + G+S L+ +R +I R+ L D S L+ AN Sbjct: 311 NIEEFKKQFGISEKDVLSLDTSFRSTNKILRVAHRLISHNYPE-DRKSECLLLKNCDANE 369 Query: 137 GFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVIT 196 G N V+E + EG EA + E +E ++ G+P ++I V+ Sbjct: 370 GK--------------NVVVQETKDEGE------EARKIAEQIESYIKKGIPLKEIAVL- 408 Query: 197 PYN--GQVELIRNILNSRCS----------LKPVEVSTVDSF 226 Y Q IR +L R LK E+ TV S+ Sbjct: 409 -YRTHTQGRQIRQVLQRREIPVLVKDDADYLKQPEIKTVLSY 449 >tr:Q5X8R4_LEGPA Hypothetical protein. Legionella pneumophila (strain Paris). Length = 879 Score = 42.9 bits (100), Expect = 5e-04 Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 6/59 (10%) Query: 27 DVVIIDEAAQ---ALEAECLIPLLLAKKKFILVGDHKQLPPTIK---SKKAAAKAGLEE 79 DV+IIDEA A A + A K ILVGD QL P K + AA G E Sbjct: 423 DVLIIDEAGMVDFASMALLIREAKKAGSKLILVGDPDQLKPIHKGEIFRGIAALTGYIE 481 >tr:Q9HIE2_THEAC Hypothetical protein Ta1398. Thermoplasma acidophilum. Length = 531 Score = 42.9 bits (100), Expect = 5e-04 Identities = 57/290 (19%), Positives = 83/290 (28%), Gaps = 63/290 (21%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDV-VIIDEAAQALEAECLIPL--LLAKKK----F 53 E K+V MT + L +F+ V+IDEA+++ I L LAK + Sbjct: 137 ETKIVLMTNY------QRLYPGNNRFNYNVMIDEASKSPLHTAFIGLANQLAKDELDGSI 190 Query: 54 ILVGDHKQ--------------------LPPTIKSKKAAAKAGLEESLFERLVELGVSVV 93 +VGD Q L P + + +R G S Sbjct: 191 SIVGDPMQAISLGPYQGSARRMLIMSYLLAPMLNHSSRDLNDRELLAEAKRSAIRGSSFE 250 Query: 94 RLNVQYRMHPEICRLPSNLFYEGN-------GLVDISSVARRLEYDSANPGFFPTPQFIV 146 L V RM S FY+ + + S+ + A Sbjct: 251 FLEVTLRMPSPSEEAISKGFYDNDLRAYRSASQILHSNYEANKLRELATEKEQMRKITEK 310 Query: 147 PLSFVDNSGVEEEEPEGYSY-------------QNPGEAEFVVEIVEYLLRSGVPPEDIG 193 + E +P AE +E L Sbjct: 311 VEELISTGRCILYERVNEKKSYDSNYYRKYGLTYDPTRAELGIETAIALAAGTGKHT--T 368 Query: 194 VITPYNG---QVELIRN-----ILNSRCSLKPVEVSTVDSFQGREKDIII 235 VIT Y Q++L+ IL + ST SF G E D I+ Sbjct: 369 VITTYVDQQIQMDLLMRRKYGYILEKYGIRDQISFSTTQSFLGAEDDNIV 418 >tr:Q86924_9VIRU Polyprotein 1. Aura virus. Length = 2498 Score = 42.9 bits (100), Expect = 5e-04 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 23/100 (23%) Query: 27 DVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 DV+ +DEA A LI ++ ++K +L GD KQ P +L + Sbjct: 786 DVLYVDEAFACHAGTLMALIAIVKPRRKVVLCGDPKQWPFF--------------NLMQL 831 Query: 85 LVELGVSVVRLN--VQY-----RMHPEICRLPSNLFYEGN 117 V L Y R + + S L Y+G Sbjct: 832 KVNFNNPERDLCTSTHYKYISRRCTQPVTAIVSTLHYDGK 871 >tr:Q8FLG9_COREF Putative conjugal transfer protein traA. Corynebacterium efficiens. Length = 1186 Score = 42.5 bits (99), Expect = 6e-04 Identities = 37/181 (20%), Positives = 56/181 (30%), Gaps = 23/181 (12%) Query: 28 VVIIDEAAQALEA---ECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 VV++DEA L A + + VGD Q A++G+ +L Sbjct: 545 VVVVDEAGMVATPDMATLLQVTAAADARIVFVGDPHQ------YSAVKARSGMLATLAYE 598 Query: 85 LVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQF 144 L + V L +R RL S L G+ + + + + G Sbjct: 599 LPD----SVELTEVFRQKHAGERLASQLLRNGDETDTARAAQWYADNNRLHAGSSTAMLM 654 Query: 145 IVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYL-LRSGVPPEDIGVITPYNGQVE 203 S+ + E S E V+ L + D G I P QV Sbjct: 655 DALTSWAKDKDKGLESLLVAS---------TREDVDLLNRLAQQVCGDTGAINPLGHQVR 705 Query: 204 L 204 L Sbjct: 706 L 706 >tr:Q8NS28_CORGL Superfamily I DNA and RNA helicases (EC 3.6.1.-) (ATP-DEPENDENT HELICASE PCRA). Corynebacterium glutamicum (Brevibacterium flavum). Length = 763 Score = 42.5 bits (99), Expect = 6e-04 Identities = 30/202 (14%), Positives = 54/202 (26%), Gaps = 38/202 (18%) Query: 23 KFKFDVVIIDEAAQALEA--ECLIPLLLAKKK----FILVGDHKQLPPTIKSKKAAAKAG 76 + +F V+IDE A E + L+ + +VGD Q Sbjct: 223 RRRFRHVLIDEYQDTNHAQYELISTLVGKPDQDPSELCVVGDSDQ-SIYAFRGATIRNIE 281 Query: 77 LEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANP 136 E F + L YR I + + + Sbjct: 282 EFERDFS-----NARTILLEQNYRSTQTILSAANAVISQNEN------------------ 318 Query: 137 GFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVIT 196 P + G E+ + EA F+ ++ L+ G+ DI ++ Sbjct: 319 --------RRPKNLWTALGEGEQIIGYVADNEHDEARFIASEIDNLVDHGMSYSDIAIMY 370 Query: 197 PYNGQVELIRNILNSRCSLKPV 218 N + ++ V Sbjct: 371 RTNNSSRALEDVFMRTGVPYKV 392 >tr:Q5WHN2_BACSK ATP-dependent exoDNAse alpha subunit. Bacillus clausii (strain KSM-K16). Length = 761 Score = 42.5 bits (99), Expect = 6e-04 Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 50/198 (25%) Query: 11 GAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK-----KFILVGDHKQLPPT 65 G+A+ + E+ + +++I+DE + + + L K + +LVGD QLP Sbjct: 430 GSATGFEKGDHEQLEGELLIVDEMSMV---DAWVANQLFKAIPKGMQVVLVGDENQLPSV 486 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSV 125 G + L + L + ++L Y I + Sbjct: 487 ----------GPGQVLKDLLEADVIPTIQL---------------KDIYRQAEGSSIIEL 521 Query: 126 ARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRS 185 A ++ F V N + V +I E ++ Sbjct: 522 AHSMKDGVLPSDFLTKKADRVFFPCQPNQVQQ----------------AVWQICENAMKK 565 Query: 186 GVPPEDIGVITP-YNGQV 202 G ++I V+ P Y GQ Sbjct: 566 GYSAKEIQVLAPMYRGQA 583 >tr:Q7P1K8_CHRVO DNA helicase II (EC 3.6.1.-). Chromobacterium violaceum. Length = 713 Score = 42.5 bits (99), Expect = 7e-04 Identities = 39/189 (20%), Positives = 65/189 (34%), Gaps = 34/189 (17%) Query: 25 KFDVVIIDEAAQALEAE-CLIPLLLAKKKFIL-VGDHKQLPPTIKSKKAAAKAGLEESLF 82 +F +++DE + + LL + + VGD Q +I + + A + L Sbjct: 211 RFSHILVDEFQDTNRLQYAWLKLLAGEHGALFAVGDDDQ---SIYAFRGAEVGNMRALLS 267 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTP 142 + V VRL YR I + L E + G Sbjct: 268 DFHVAE---PVRLEQNYRSMGNILNAANALI----------------EQNDGRLGKNLWT 308 Query: 143 QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQV 202 D + +G EAEF+V+ + L R G+ DI V+ N Q Sbjct: 309 DAGEG----DKIRFFQAGSDGE------EAEFIVDEAKSLHRDGLALSDIAVLYRSNAQS 358 Query: 203 ELIRNILNS 211 L+ ++L + Sbjct: 359 RLLEHVLVN 367 >tr:Q8QL53_9VIRU Non-structural polyprotein. Sleeping disease virus. Length = 2593 Score = 42.5 bits (99), Expect = 7e-04 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 12/93 (12%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 D + +DEA LI + K +L GD KQ+ + + E S Sbjct: 811 DTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQ-LQMRMHYNHEIS---- 865 Query: 85 LVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN 117 V+R N+ R + + SNL YEG Sbjct: 866 -----DRVLRKNISRRCTHTLTAIVSNLNYEGR 893 >tr:Q5L066_GEOKA Hypothetical protein GK1385. Geobacillus kaustophilus. Length = 556 Score = 42.1 bits (98), Expect = 8e-04 Identities = 47/224 (20%), Positives = 78/224 (34%), Gaps = 37/224 (16%) Query: 24 FKFDVVIIDEAAQALEAECLIPLL-LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 K+D + +DE Q L+A L L+ LAKK ++ GD KQ + S F Sbjct: 267 LKYDYIFVDEV-QDLQAMQLKALVGLAKKSIVVSGDPKQ-------------RIYKRSPF 312 Query: 83 E----RLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGF 138 L G L YR +I +L S+L + + E + F Sbjct: 313 SYRDLGLHIEGRKTRNLRTNYRSTKQIMKLASSLEFIDAENDRLDDQRFVREGKKPSIYF 372 Query: 139 FPTPQFIVPLSFVDNSGVEEEEPEGY------SYQNPGEAEFVVEIVEYLLRSGVPPEDI 192 FP+ + LS + V+ + +++ G+ + + L+ Sbjct: 373 FPSSKE---LSCHLVNQVKVIQKNDPDATIAVIHRHDGDTYAISQ-CSVLMELKKH---F 425 Query: 193 GVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIIL 236 VIT + KP+ + S +G E D + L Sbjct: 426 DVIT-----SSQYGRRFDLNKQKKPILFTDAYSVKGLEFDYVFL 464 >tr:Q6A849_PROAC Exonuclease V, alpha chain (EC 3.1.11.5). Propionibacterium acnes. Length = 628 Score = 42.1 bits (98), Expect = 8e-04 Identities = 35/169 (20%), Positives = 54/169 (31%), Gaps = 22/169 (13%) Query: 11 GAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLL--AKKKFILVGDHKQLPPTIKS 68 G + K F VV++DEA+ L + + ILVGD QL + Sbjct: 275 GPGTSFGYDEQHKLPFGVVVVDEASMLSLPLAASLLSAIGPQTRLILVGDPGQL---VSV 331 Query: 69 KKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARR 128 + A + S +L V L +R +I RL S EG+ + +A Sbjct: 332 DAGSVLADIVSSADALQAQL--PVTILTCNHRSRGDIARL-SEAVREGDKSTALDVLATA 388 Query: 129 LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVE 177 T P S SG ++ + A + Sbjct: 389 AG---------VTHDSPSPDSIATISG-----RRSITWIDADPASITMA 423 >tr:Q92ZI0_RHIME Probable TraA1 conjugal transfer protein. Rhizobium meliloti (Sinorhizobium meliloti). Length = 1539 Score = 42.1 bits (98), Expect = 8e-04 Identities = 27/107 (25%), Positives = 37/107 (34%), Gaps = 15/107 (14%) Query: 24 FKFDVVIIDEAAQAL---EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + DV++IDEA A L + A K +LVGD QL P E Sbjct: 476 NRGDVLVIDEAGMVSSQQMARVLKAVEDAGAKAVLVGDAMQLQPI------------EAG 523 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVAR 127 R + + L R R S LF G + + A+ Sbjct: 524 AAFRAISERIGFAELAGVRRQRDAWARDASRLFARGKVEEGLDAYAQ 570 >tr:Q7VBJ9_PROMA ATP-dependent exoDNAse alpha subunit. Prochlorococcus marinus. Length = 564 Score = 42.1 bits (98), Expect = 8e-04 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 20/118 (16%) Query: 4 VVAMTCTGAAS-----KRKSLALEKFKFDVVIIDEAAQA---LEAECLIPLLLAKKKFIL 55 + K K + D+++IDE + L L L + + IL Sbjct: 217 KIPCLTLHRWLQAVEGKFLKGKKNKLQLDILVIDEMSMVDLSLMQAVLNALPK-ESQLIL 275 Query: 56 VGDHKQLPPT---IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPS 110 VGD QL P K ++ E + L+ YR E+ L Sbjct: 276 VGDPDQLAPVGNGAVWHKLQEESTRE--------IFKHCAIHLSKLYRTRGEVASLAK 325 >tr:Q5XXP4_9VIRU Nonstructural polyprotein. Chikungunya virus. Length = 2474 Score = 42.1 bits (98), Expect = 8e-04 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQ 61 DV+ +DEA LI L+ ++K +L GD KQ Sbjct: 782 DVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQ 818 >tr:Q8JUX6_9VIRU Nonstructural polyprotein. Chikungunya virus. Length = 2474 Score = 42.1 bits (98), Expect = 8e-04 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQ 61 DV+ +DEA LI L+ ++K +L GD KQ Sbjct: 782 DVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQ 818 >tr:Q5HN29_STAEQ ATP-dependent DNA helicase PcrA (EC 3.6.1.-). Staphylococcus epidermidis (strain ATCC 35984 / RP62A). Length = 729 Score = 42.1 bits (98), Expect = 8e-04 Identities = 34/216 (15%), Positives = 63/216 (29%), Gaps = 44/216 (20%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLLLAKK--KFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + KF + +DE +A+ + LLA K +VGD Q + A + S Sbjct: 210 QNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNLCVVGDSDQ--SIYGWRGADIQN--ILS 265 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 E E + L YR I + + + Sbjct: 266 FEEDYPE--AKTIFLEQNYRSTKNILNAANEVIKHNSE---------------------- 301 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 P + ++ + EAE+VV+ + RSG ++ ++ N Sbjct: 302 ----RKPKGLWTANSGGDKIQYYEAMTERDEAEYVVKEIMKHQRSGKKYSEMAILYRTNA 357 Query: 201 QVELIRNILNSR----------CSLKPVEVSTVDSF 226 Q ++ E+ + S+ Sbjct: 358 QSRVLEETFMKSNIPYTMVGGQKFYDRKEIKDLLSY 393 >tr:Q7V6R1_PROMM Similar to UvrD/REP helicase. Prochlorococcus marinus (strain MIT 9313). Length = 576 Score = 41.7 bits (97), Expect = 0.001 Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 23/133 (17%) Query: 24 FKFDVVIIDEAAQALEAECLIPLLLA---KKKFILVGDHKQLPPT---IKSKKAAAKAGL 77 D+++IDE + E + LL A + +++GD QLPP + +A + Sbjct: 244 LMLDLLVIDEMSMV-ELALMQALLNALPVDSQLVMIGDPDQLPPVGSGAVWHQLQ-QADI 301 Query: 78 EESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL-------FYEGNGLVDISS-VARRL 129 + + + L+ YR + L L F++ L+ S+ V + Sbjct: 302 RQ-------QFNHGAIHLHQLYRNRGSLATLSRVLCDQGLSAFWQQLSLLSKSANVEQHQ 354 Query: 130 EYDSANPGFFPTP 142 S+ P F Sbjct: 355 YNLSSMPRFLVQH 367 >tr:Q92VN3_RHIME Putative conjugal transfer protein. Rhizobium meliloti (Sinorhizobium meliloti). Length = 1539 Score = 41.7 bits (97), Expect = 0.001 Identities = 27/107 (25%), Positives = 37/107 (34%), Gaps = 15/107 (14%) Query: 24 FKFDVVIIDEAAQAL---EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + DV++IDEA A L + A K +LVGD QL P E Sbjct: 476 QRGDVLVIDEAGMVSSQQMARVLKAVEDAGAKAVLVGDAMQLQPI------------EAG 523 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVAR 127 R + + L R R S LF G + + A+ Sbjct: 524 AAFRAISERIGFAELAGVRRQRDAWARDASRLFARGKVEEGLDAYAQ 570 >tr:Q7D3W2_AGRT5 AGR_pAT_164p. Agrobacterium tumefaciens (strain C58 / ATCC 33970). Length = 1609 Score = 41.3 bits (96), Expect = 0.001 Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 15/108 (13%) Query: 27 DVVIIDEAAQALEAECLIPLLLAK---KKFILVGDHKQLPPTIKSKKAAAKAGLEESLFE 83 D+ +IDEA + L A+ K +LVGD QL P +AG Sbjct: 546 DIFVIDEAGMVSSQQMARVLKRAEEAGAKVVLVGDAMQLQPI--------QAGA----AF 593 Query: 84 RLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEY 131 R + + L R E R S LF G + + A+R Sbjct: 594 RAISERIGFAELAGVRRQREEWAREASRLFACGKVEEGLDAYAQRGRI 641 >tr:Q8F7H9_LEPIN Exodeoxyribonuclease V, beta chain (EC 3.1.11.5). Leptospira interrogans. Length = 1046 Score = 41.3 bits (96), Expect = 0.001 Identities = 33/144 (22%), Positives = 52/144 (36%), Gaps = 10/144 (6%) Query: 51 KKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPS 110 + L+GD KQ A G+ E L + + LNV YR PE+ R + Sbjct: 257 RALYLIGDPKQ----SIYGFRGADIGIYLQAKEELKKHKAEEISLNVNYRSVPELIRAYN 312 Query: 111 NLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSG-VEEEEPEGYSYQNP 169 +F +G + + P F P V LS G ++ G + N Sbjct: 313 EIFGGKSGKQSFFPILEQSIPIQYEPVFAPKENIKVLLSDKQKQGPIQIVRFTGKDFWNT 372 Query: 170 GEAE-----FVVEIVEYLLRSGVP 188 +A+ F+ E + L+ P Sbjct: 373 QDAKNAWGQFISEEILKLIHKEDP 396 >tr:Q8UKJ1_AGRT5 Conjugal transfer protein. Agrobacterium tumefaciens (strain C58 / ATCC 33970). Length = 1542 Score = 41.3 bits (96), Expect = 0.001 Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 15/108 (13%) Query: 27 DVVIIDEAAQALEAECLIPLLLAK---KKFILVGDHKQLPPTIKSKKAAAKAGLEESLFE 83 D+ +IDEA + L A+ K +LVGD QL P +AG Sbjct: 479 DIFVIDEAGMVSSQQMARVLKRAEEAGAKVVLVGDAMQLQPI--------QAGA----AF 526 Query: 84 RLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEY 131 R + + L R E R S LF G + + A+R Sbjct: 527 RAISERIGFAELAGVRRQREEWAREASRLFACGKVEEGLDAYAQRGRI 574 >tr:Q72NZ1_LEPIC Exodeoxyribonuclease V beta chain. Leptospira interrogans (serogroup Icterohaemorrhagiae / serovar Copenhageni). Length = 1033 Score = 41.3 bits (96), Expect = 0.001 Identities = 33/144 (22%), Positives = 52/144 (36%), Gaps = 10/144 (6%) Query: 51 KKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPS 110 + L+GD KQ A G+ E L + + LNV YR PE+ R + Sbjct: 244 RALYLIGDPKQ----SIYGFRGADIGIYLQAKEELKKHKAEEISLNVNYRSVPELIRAYN 299 Query: 111 NLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSG-VEEEEPEGYSYQNP 169 +F +G + + P F P V LS G ++ G + N Sbjct: 300 EIFGGKSGKQSFFPILEQSIPIQYEPVFAPKENIKVLLSDKQKQGPIQIVRFTGKDFWNT 359 Query: 170 GEAE-----FVVEIVEYLLRSGVP 188 +A+ F+ E + L+ P Sbjct: 360 QDAKNAWGQFISEEILKLIHKEDP 383 >tr:Q7U7R4_SYNPX Probable exodeoxyribonuclease V, beta subunit RecB (EC 3.1.11.5). Synechococcus sp. (strain WH8102). Length = 1186 Score = 41.3 bits (96), Expect = 0.001 Identities = 38/209 (18%), Positives = 65/209 (31%), Gaps = 27/209 (12%) Query: 19 LALEKFKFDVVIIDEAAQALEAECLIPLLL----AKKKFILVGDHKQLPPTIKSKKAAAK 74 L + ++ V++DE Q + L +LVGD KQ Sbjct: 384 LEPLQQRYRAVMVDE-FQDTDPVQWRLLQRSFGGGSHLLLLVGDPKQ--------AIYRF 434 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 G + + R L + L YR P + + L G + A + Sbjct: 435 RGGDLDTYRRARGLVSRIDTLEDNYRTTPPLMAGLNALMAPGLPESRLEVPAVHARTARS 494 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEF---VVEIVEYLLRSG--VPP 189 Q + L F E + + + EA V E+V LL + P Sbjct: 495 AAVLPEGQQPLQLLQF---------EQDLPAGKTAIEAAVPPAVAEVVMQLLIEQPALSP 545 Query: 190 EDIGVITPYNGQVELIRNILNSRCSLKPV 218 + + ++ + Q +R L R + Sbjct: 546 DQLCILVSRHDQAADLRRALAERGVPTRL 574 >tr:Q93UY4_9RHIZ TraA protein. Agrobacterium tumefaciens. Length = 1108 Score = 41.3 bits (96), Expect = 0.001 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 10/85 (11%) Query: 28 VVIIDEAAQAL---EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 ++++DEA A + + A K +LVGD +QL P ++ +R Sbjct: 476 IIVLDEAGMVSSRQMALLVETVTRAGAKLVLVGDPEQLQPI-------EAGAAFRAIADR 528 Query: 85 LVELGVSVVRLNVQYRMHPEICRLP 109 + + + Q M L Sbjct: 529 IGYAELETIYRQRQQWMRDASLDLA 553 >tr:Q62S80_BACLD Putative exodeoxyribonuclease V alpha subunit YrrC. Bacillus licheniformis (strain DSM 13 / ATCC 14580). Length = 799 Score = 41.3 bits (96), Expect = 0.001 Identities = 38/201 (18%), Positives = 63/201 (31%), Gaps = 56/201 (27%) Query: 22 EKFKFDVVIIDEAAQALEAECLIPLLLAKK-----KFILVGDHKQLPPTIKSKKAAAKAG 76 + ++IIDE + + + L K + I+VGD QLP G Sbjct: 448 NPIEGRLLIIDETSM---LDIWLANQLFKAIPDRIQVIMVGDEDQLPSV----------G 494 Query: 77 LEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANP 136 + L + L + VRL YR I +A ++ Sbjct: 495 PGQVLRDLLASNVIPSVRLTDIYR---------------QAEGSSIVELAHEMKQGKLPE 539 Query: 137 GFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVIT 196 + +++ E V ++V+ L+ G DI V+ Sbjct: 540 NLAAPTKDRSF-----IRCRQQQIK-----------EVVEKVVKNALQKGYSARDIQVLA 583 Query: 197 P-YNGQV------ELIRNILN 210 P Y G L++ ILN Sbjct: 584 PMYRGAAGINELNALLQGILN 604 >tr:Q65GS1_BACLD YrrC. Bacillus licheniformis (strain DSM 13 / ATCC 14580). Length = 798 Score = 41.3 bits (96), Expect = 0.002 Identities = 38/201 (18%), Positives = 63/201 (31%), Gaps = 56/201 (27%) Query: 22 EKFKFDVVIIDEAAQALEAECLIPLLLAKK-----KFILVGDHKQLPPTIKSKKAAAKAG 76 + ++IIDE + + + L K + I+VGD QLP G Sbjct: 447 NPIEGRLLIIDETSM---LDIWLANQLFKAIPDRIQVIMVGDEDQLPSV----------G 493 Query: 77 LEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANP 136 + L + L + VRL YR I +A ++ Sbjct: 494 PGQVLRDLLASNVIPSVRLTDIYR---------------QAEGSSIVELAHEMKQGKLPE 538 Query: 137 GFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVIT 196 + +++ E V ++V+ L+ G DI V+ Sbjct: 539 NLAAPTKDRSF-----IRCRQQQIK-----------EVVEKVVKNALQKGYSARDIQVLA 582 Query: 197 P-YNGQV------ELIRNILN 210 P Y G L++ ILN Sbjct: 583 PMYRGAAGINELNALLQGILN 603 >tr:Q5NQ07_ZYMMO DNA and RNA helicase. Zymomonas mobilis. Length = 768 Score = 41.3 bits (96), Expect = 0.002 Identities = 44/208 (21%), Positives = 68/208 (32%), Gaps = 44/208 (21%) Query: 16 RKSLALEKFKFDVVIIDEAAQALEA--ECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAA 73 R+ L +F +++DE +A L L + VGD Q +I S + A Sbjct: 220 REVLDSYHDRFRYIMVDEYQDTNQAQYLWLRLLAQKNRNICCVGDDDQ---SIYSWRGAE 276 Query: 74 KAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDS 133 A E G ++RL YR P+I S L N Sbjct: 277 VAN-ILRFEEDFP--GAKIIRLEHNYRSTPQILGAASGLITHNN---------------- 317 Query: 134 ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG 193 A G + V GV + EA +V V+ L R+ +P + Sbjct: 318 ARLGKTLWTERDQGEK-VKIIGV---------WDGAEEARQLVADVQNLRRANIPLNKMA 367 Query: 194 VITPYNGQVELIRNILNSRCSLKPVEVS 221 + LIR SR + + ++ Sbjct: 368 I---------LIRAQFQSR-EFEDIFIA 385 >tr:Q809B7_SFV Non-structural polyprotein. Semliki forest virus (SFV). Length = 1804 Score = 41.3 bits (96), Expect = 0.002 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQ 61 D++ +DEA LI L+ + K +L GD KQ Sbjct: 784 DILYVDEAFACHSGTLLALIALVKPRSKVVLCGDPKQ 820 >tr:O73550_SFV Polyprotein (Fragment). Semliki forest virus (SFV). Length = 1336 Score = 41.3 bits (96), Expect = 0.002 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQ 61 D++ +DEA LI L+ + K +L GD KQ Sbjct: 784 DILYVDEAFACHSGTLLALIALVKPRSKVVLCGDPKQ 820 >tr:Q9QBM1_SFV Polyprotein nsP1234. Semliki forest virus (SFV). Length = 2432 Score = 41.3 bits (96), Expect = 0.002 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQ 61 D++ +DEA LI L+ + K +L GD KQ Sbjct: 784 DILYVDEAFACHSGTLLALIALVKPRSKVVLCGDPKQ 820 >tr:Q53AM5_9VIRU Non-structural polyprotein (Fragment). Salmon pancreas disease virus. Length = 2581 Score = 41.0 bits (95), Expect = 0.002 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 12/93 (12%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 D + +DEA LI + K +L GD KQ+ + + E S Sbjct: 805 DTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQ-LQMRMHYNHEIS---- 859 Query: 85 LVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN 117 V+R N+ R + + SNL YEG Sbjct: 860 -----DHVLRKNISRRCTHTLTAIVSNLNYEGR 887 >tr:Q53AM7_9VIRU Non-structural polyprotein (Fragment). Salmon pancreas disease virus. Length = 2584 Score = 41.0 bits (95), Expect = 0.002 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 12/93 (12%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 D + +DEA LI + K +L GD KQ+ + + E S Sbjct: 808 DTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQ-LQMRMHYNHEIS---- 862 Query: 85 LVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN 117 V+R N+ R + + SNL YEG Sbjct: 863 -----DHVLRKNISRRCTHTLTAIVSNLNYEGR 890 >tr:Q53AM8_9VIRU Non-structural polyprotein (Fragment). Salmon pancreas disease virus. Length = 2569 Score = 41.0 bits (95), Expect = 0.002 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 12/93 (12%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 D + +DEA LI + K +L GD KQ+ + + E S Sbjct: 793 DTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQ-LQMRMHYNHEIS---- 847 Query: 85 LVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN 117 V+R N+ R + + SNL YEG Sbjct: 848 -----DHVLRKNISRRCTHTLTAIVSNLNYEGR 875 >tr:Q53AN1_9VIRU Non-structural polyprotein (Fragment). Salmon pancreas disease virus. Length = 2583 Score = 41.0 bits (95), Expect = 0.002 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 12/93 (12%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 D + +DEA LI + K +L GD KQ+ + + E S Sbjct: 807 DTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQ-LQMRMHYNHEIS---- 861 Query: 85 LVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN 117 V+R N+ R + + SNL YEG Sbjct: 862 -----DHVLRKNISRRCTHTLTAIVSNLNYEGR 889 >tr:Q8QQZ3_SINDV Nonstructural polyprotein 1234 (Fragment). Sindbis virus. Length = 2508 Score = 41.0 bits (95), Expect = 0.002 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Query: 27 DVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 DV+ +DEA A LI ++ +KK +L GD KQ Sbjct: 787 DVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPKQ 823 >tr:Q8QQZ4_SINDV Nonstructural polyprotein 123. Sindbis virus. Length = 1891 Score = 41.0 bits (95), Expect = 0.002 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Query: 27 DVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 DV+ +DEA A LI ++ +KK +L GD KQ Sbjct: 787 DVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPKQ 823 >tr:Q8QTI6_SINDV Nonstructural polyprotein. Sindbis virus. Length = 1870 Score = 41.0 bits (95), Expect = 0.002 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Query: 27 DVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 DV+ +DEA A LI ++ +KK +L GD KQ Sbjct: 787 DVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPKQ 823 >tr:Q8QTI7_SINDV Nonstructural protein. Sindbis virus. Length = 2487 Score = 41.0 bits (95), Expect = 0.002 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Query: 27 DVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 DV+ +DEA A LI ++ +KK +L GD KQ Sbjct: 787 DVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPKQ 823 >tr:Q8KIN6_RHIET Conjugation transfer protein (Putative relaxase). Rhizobium etli. Length = 1552 Score = 41.0 bits (95), Expect = 0.002 Identities = 33/141 (23%), Positives = 45/141 (31%), Gaps = 18/141 (12%) Query: 24 FKFDVVIIDEAAQAL---EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + DV++IDEA A L A+ K +LVGD QL P +AG Sbjct: 479 HRGDVLVIDEAGMVASQQMARVLKIAEEAEVKVVLVGDAMQLQPI--------QAGA--- 527 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 R + + L R R S LF G + + AR A Sbjct: 528 -AFRAITERIGFAELAGVRRQREAWARNASRLFARGEVEKGLDAYARHGHLVEAG---TR 583 Query: 141 TPQFIVPLSFVDNSGVEEEEP 161 +S + E E Sbjct: 584 EETIDRIVSDWAAARREAIER 604 >tr:O84614_CHLTR DNA Helicase. Chlamydia trachomatis. Length = 634 Score = 41.0 bits (95), Expect = 0.002 Identities = 37/180 (20%), Positives = 55/180 (30%), Gaps = 37/180 (20%) Query: 29 VIIDEAAQALEAECLIP--LLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLV 86 ++IDE A+ LI L A +VGD Q S + A + L Sbjct: 210 LLIDEYQDTNHAQYLIAKRLAAAHNNIFVVGDPDQ------SIYSWRGANISNILNFEQD 263 Query: 87 ELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIV 146 VVRL YR I + L + +SA Sbjct: 264 YSQALVVRLEENYRSCGTILEAANALI----------------QNNSARLEKTLRSVKGP 307 Query: 147 PLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLR-SGVPPEDIGVI--TPYNGQVE 203 +G + + EAE V+E + L +P DI ++ T + Q Sbjct: 308 GDKIFCFTGKNDRD----------EAEQVLEEISNLHSYKDIPLSDICILYRTNFQSQSF 357 >tr:Q8NSA0_CORGL Superfamily I DNA and RNA helicases (EC 3.6.1.-) (PUTATIVE DNA HELICASE RECQ). Corynebacterium glutamicum (Brevibacterium flavum). Length = 678 Score = 41.0 bits (95), Expect = 0.002 Identities = 35/165 (21%), Positives = 55/165 (33%), Gaps = 29/165 (17%) Query: 55 LVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFY 114 +VGD Q TI S F R +VV+L YR P++ L + + Sbjct: 244 VVGDANQ---TIYS--FTGATPEFLLNFSRKYP-EATVVKLQRDYRSTPQVTALANTVIG 297 Query: 115 EGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEF 174 + G V + + + + P P+F P EA Sbjct: 298 QARGRVAGTRLELQGMRIAG-----PEPEFSAFDDE------------------PTEARE 334 Query: 175 VVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVE 219 V + LL++GV +I V+ N Q + L + V Sbjct: 335 VAGRILTLLKNGVQASEIAVLYRINAQSAVFEQALADAGIVYQVR 379 >tr:Q9PPY9_UREPA DNA helicase II. Ureaplasma parvum (Ureaplasma urealyticum biotype 1). Length = 743 Score = 41.0 bits (95), Expect = 0.002 Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 37/187 (19%) Query: 13 ASKRKSLALEKFKFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKK 70 + L + KFD +++DE ++ + + L + +VGD Q I S Sbjct: 208 IEFPEVLEKWQNKFDYILVDEFQDTNKIQYDLISLLATKHQNLFVVGDPDQ---MIYS-- 262 Query: 71 AAAKAGLEESLFERLVE--LGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARR 128 G E+ + + V L YR I + L N + A Sbjct: 263 ---FRGAEQWIINNFSQNFKNTKVTILKTNYRSTQPILNTANRLIDANNNNYKKNLTAFN 319 Query: 129 LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVP 188 + N + EA ++ + LL G P Sbjct: 320 TNDN--------------------NLPIYLRGQNP-----IDEANWIARKIRELLEEGTP 354 Query: 189 PEDIGVI 195 I V+ Sbjct: 355 ANQIAVL 361 >tr:Q5FZN4_9VIRU Helicase (Fragment). Avian hepatitis E virus. Length = 114 Score = 41.0 bits (95), Expect = 0.002 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 29 VIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKA 71 VI+DEA A+ L+ L + +++GD Q+P + Sbjct: 10 VIVDEAY-AIPPHLLVASLRRARDVVMLGDPHQIPALDFDGRC 51 >tr:Q5FZN5_9VIRU Helicase (Fragment). Avian hepatitis E virus. Length = 142 Score = 41.0 bits (95), Expect = 0.002 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 29 VIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKA 71 VI+DEA A+ L+ L + +++GD Q+P + Sbjct: 38 VIVDEAY-AIPPHLLVASLRRARDVVMLGDPHQIPALDFDGRC 79 >tr:Q5FZN6_9VIRU Helicase (Fragment). Avian hepatitis E virus. Length = 142 Score = 41.0 bits (95), Expect = 0.002 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 29 VIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKA 71 VI+DEA A+ L+ L + +++GD Q+P + Sbjct: 38 VIVDEAY-AIPPHLLVASLRRARDVVMLGDPHQIPALDFDGRC 79 >tr:Q5FZN7_9VIRU Helicase (Fragment). Avian hepatitis E virus. Length = 114 Score = 41.0 bits (95), Expect = 0.002 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 29 VIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKA 71 VI+DEA A+ L+ L + +++GD Q+P + Sbjct: 10 VIVDEAY-AIPPHLLVASLRRARDVVMLGDPHQIPALDFDGRC 51 >tr:Q5Y5S9_9VIRU Helicase (Fragment). Avian hepatitis E virus. Length = 138 Score = 41.0 bits (95), Expect = 0.002 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 29 VIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKA 71 VI+DEA A+ L+ L + +++GD Q+P + Sbjct: 22 VIVDEAY-AIPPHLLVASLRRARDVVMLGDPHQIPALDFDGRC 63 >tr:Q6QLN1_9VIRU Non-structural polyprotein. Avian hepatitis E virus. Length = 1531 Score = 41.0 bits (95), Expect = 0.002 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 29 VIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKA 71 VI+DEA A+ L+ L + +++GD Q+P + Sbjct: 868 VIVDEAY-AIPPHLLVASLRRARDVVMLGDPHQIPALDFDGRC 909 >tr:Q5HEL7_STAAC ATP-dependent DNA helicase PcrA (EC 3.6.1.-). Staphylococcus aureus (strain COL). Length = 730 Score = 41.0 bits (95), Expect = 0.002 Identities = 35/216 (16%), Positives = 65/216 (30%), Gaps = 44/216 (20%) Query: 23 KFKFDVVIIDEAAQALEAE-CLIPLLLAK-KKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + KF + +DE +A+ L+ LL +K K +VGD Q + A + S Sbjct: 210 QNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQ--SIYGWRGADIQN--ILS 265 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 + E + L YR I + + + Sbjct: 266 FEKDYPEAN--TIFLEQNYRSTKTILNAANEVIKNNSE---------------------- 301 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 P + E+ + EAEFV+ + R+G +D+ ++ N Sbjct: 302 ----RKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNA 357 Query: 201 QVELIRNILNSR----------CSLKPVEVSTVDSF 226 Q ++ E+ + S+ Sbjct: 358 QSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSY 393 >tr:Q68W15_RICTY ATP-dependent helicase/nuclease. Rickettsia typhi. Length = 823 Score = 41.0 bits (95), Expect = 0.002 Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 17/106 (16%) Query: 21 LEKFKFDVVIIDEA-----AQALEAECLI----PLLLAKKKFILVGDHKQLPPTIKSKKA 71 + + + ++IDEA Q LI +VGD KQ +I + Sbjct: 339 KLENEINHILIDEAQDTSTTQWNIITTLITKFNAAEKPNNSIFIVGDEKQ---SIFRFQG 395 Query: 72 AAKAGLEESLFERLVEL-----GVSVVRLNVQYRMHPEICRLPSNL 112 A + + L + L YR PEI + N+ Sbjct: 396 ANLHNFNLINEQLKINLTSTNKKFKNITLEYSYRSCPEILQFTHNV 441 >tr:Q8PFN7_XANAC DNA helicase. Xanthomonas axonopodis (pv. citri). Length = 609 Score = 41.0 bits (95), Expect = 0.002 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 11/97 (11%) Query: 17 KSLALEKFKFDVVIIDEAAQALEAECLIP--LLLAKKKFILVGDHKQLPPTIKSKKAAAK 74 + L + ++ ++IDEA LI L A + L+GD Q Sbjct: 218 EILRVLARRYPHILIDEAQDIGILHQLIIERLSQAGSQISLIGDPNQ--------GIYEF 269 Query: 75 AGLEESLFERLVEL-GVSVVRLNVQYRMHPEICRLPS 110 G S GV+ L YR P + L + Sbjct: 270 MGATGSFLSSYHSKPGVAPAALTRNYRSVPAVLDLAN 306 >tr:Q9F5E0_AGRRH Riorf112 protein. Agrobacterium rhizogenes. Length = 1108 Score = 40.6 bits (94), Expect = 0.002 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 10/85 (11%) Query: 28 VVIIDEAAQAL---EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 ++++DEA A + + A K +LVGD +QL P ++ +R Sbjct: 476 IIVLDEAGMVSSRQMALLVETVTRAGAKLVLVGDPEQLQPI-------EAGAAFRAIADR 528 Query: 85 LVELGVSVVRLNVQYRMHPEICRLP 109 + + + Q M L Sbjct: 529 VGYAELETIYRQRQQWMRDASLDLA 553 >tr:Q5A9E3_CANAL Hypothetical protein. Candida albicans SC5314. Length = 704 Score = 40.6 bits (94), Expect = 0.002 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 165 SYQNP-GEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPV 218 S QN EAE V + Y+ G P E IG+ Q++LI I K V Sbjct: 549 SAQNQLEEAELCVLLYRYMRALGYPRESIGIWVSCKRQLDLINEIAKESDLDKDV 603 >tr:Q8GM52_ZYMMO Helicase II. Zymomonas mobilis. Length = 777 Score = 40.6 bits (94), Expect = 0.003 Identities = 44/208 (21%), Positives = 68/208 (32%), Gaps = 44/208 (21%) Query: 16 RKSLALEKFKFDVVIIDEAAQALEA--ECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAA 73 R+ L +F +++DE +A L L + VGD Q +I S + A Sbjct: 219 REVLDSYHDRFRYIMVDEYQDTNQAQYLWLRLLAQKNRNICCVGDDDQ---SIYSWRGAE 275 Query: 74 KAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDS 133 A E G ++RL YR P+I S L N Sbjct: 276 VAN-ILRFEEDFP--GAKIIRLEHNYRSTPQILGAASGLITHNN---------------- 316 Query: 134 ANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIG 193 A G + V GV + EA +V V+ L R+ +P + Sbjct: 317 ARLGKTLWTERDQGEK-VKIIGV---------WDGAEEARQLVADVQNLRRANIPLNKMA 366 Query: 194 VITPYNGQVELIRNILNSRCSLKPVEVS 221 + LIR SR + + ++ Sbjct: 367 I---------LIRAQFQSR-EFEDIFIA 384 >tr:Q6XYV7_SPIKU ATP-dependent DNA helicase. Spiroplasma kunkelii. Length = 729 Score = 40.6 bits (94), Expect = 0.003 Identities = 32/154 (20%), Positives = 50/154 (32%), Gaps = 10/154 (6%) Query: 15 KRKSLALEKFKFDVVIIDEAAQALEA--ECLIPLLLAKKKFILVGDHKQLPPTIKSKKAA 72 + L + +FD ++DE E + + L+ +VGD Q TI S + Sbjct: 202 NGEVLKKWQNRFDYFLVDEFQDTNELQFDIIKWLVGDNSNITIVGDPDQ---TIYSWR-G 257 Query: 73 AKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYD 132 AK L + + + LN YR I L +NL I ++ Sbjct: 258 AKINLILNFDKYFPHTQ--TIVLNENYRSTQSILSLANNLIIHNKN--RIEKNLFTIKAS 313 Query: 133 SANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 P + FV + E Y Y Sbjct: 314 GQLPILYHGANSSDESDFVARKIKTLIKEENYDY 347 >tr:Q938A0_MYCAV Putative relaxase. Mycobacterium avium. Length = 942 Score = 40.6 bits (94), Expect = 0.003 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 15/80 (18%) Query: 28 VVIIDEAAQALEAECLIPLLLAKK----KFILVGDHKQLPPTIKSKKAAAKAGLEESLFE 83 VV++DEAA + L LL A K +LVGD QL P A+ G+ L E Sbjct: 543 VVVVDEAAMVGTED-LGALLAATTTAGVKCVLVGDAHQLAPV------KARGGMFAQLCE 595 Query: 84 RLVELGVSVVRLNVQYRMHP 103 L +L+ +RM Sbjct: 596 DLPW----TQKLSEVWRMRD 611 >tr:Q6NHI1_CORDI Putative helicase. Corynebacterium diphtheriae. Length = 770 Score = 40.6 bits (94), Expect = 0.003 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 8/86 (9%) Query: 28 VVIIDEAAQALEAECLIPLLLAKKKFI-LVGDHKQLPPTIKSKKAAAKAGLEESLFERLV 86 VI+DEA + E + + +++ LVGD Q S A + E E V Sbjct: 579 HVIVDEAQELTPMEWRMVMRRCPSRWMTLVGDTAQ-----TSSPAGVDSWAEA--LEPFV 631 Query: 87 ELGVSVVRLNVQYRMHPEICRLPSNL 112 L + YR EI + + Sbjct: 632 SGRYVTHHLTINYRTPAEIMEWANKV 657 >tr:Q8XIE6_CLOPE Exodeoxyribonuclease V alpha subunit. Clostridium perfringens. Length = 744 Score = 40.2 bits (93), Expect = 0.003 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 27 DVVIIDEAAQA--LEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 DVVIIDEA+ L+ + + I+VGD QLP ES F + Sbjct: 416 DVVIIDEASMIDITLMNALLKSIKVGTRLIIVGDVDQLPSV---GAGNVLNDFIESGFTK 472 Query: 85 LVELGVSVV 93 +V L Sbjct: 473 VVRLKEIFR 481 >tr:Q89BR0_BRAJA Blr8088 protein. Bradyrhizobium japonicum. Length = 1099 Score = 40.2 bits (93), Expect = 0.003 Identities = 40/204 (19%), Positives = 65/204 (31%), Gaps = 49/204 (24%) Query: 25 KFDVVIIDE---------------AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSK 69 +F +++DE + A +A L + +VGD KQ + + Sbjct: 378 RFSRILVDEFQDTDPLQAEIIFLLCSDAADAAAWHTKALRPGQLFVVGDPKQ--AIYRFR 435 Query: 70 KAAAKAGL--EESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSV-- 125 A L +S+ + V V + +R I R + F E V Sbjct: 436 GADLATYLTVRQSIERQFPGNIVKV---SANFRSRDPILRHVNECFSEHLSQQQAGYVAL 492 Query: 126 -ARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYL-- 182 A R D+A PG + P + V ++ E EA V E+ L Sbjct: 493 HATRGASDNALPGVAKISVELPPETNVASARDE-------------EARVVAEVCARLIG 539 Query: 183 ---------LRSGVPPEDIGVITP 197 + P DI ++ P Sbjct: 540 NVELKLNDGRARRLTPGDIALLAP 563 >tr:Q5A9P1_CANAL Hypothetical protein. Candida albicans SC5314. Length = 977 Score = 40.2 bits (93), Expect = 0.003 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 165 SYQNP-GEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPV 218 S QN EAE V + Y+ G P E IG+ Q++LI I K V Sbjct: 822 SAQNQLEEAELCVLLYRYMRALGYPRESIGIWVSCKRQLDLINEIAKESDLDKDV 876 >tr:Q8QHM4_9VIRU Nonstructural polyprotein nsP1-nsP2-nsP3. Mayaro virus. Length = 1819 Score = 40.2 bits (93), Expect = 0.003 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 27 DVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 DV+ +DEA A LI + +KK +L GD KQ Sbjct: 783 DVLYVDEAFACHAGTLLALIATVRPRKKVVLCGDPKQ 819 >tr:Q8QZ73_9VIRU Nonstructural polyprotein nsP1-nsP2-nsP3-nsP4. Mayaro virus. Length = 2437 Score = 40.2 bits (93), Expect = 0.003 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 27 DVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 DV+ +DEA A LI + +KK +L GD KQ Sbjct: 783 DVLYVDEAFACHAGTLLALIATVRPRKKVVLCGDPKQ 819 >tr:Q8JJX1_9VIRU Non-structural polyprotein. Salmon pancreas disease virus. Length = 2601 Score = 40.2 bits (93), Expect = 0.003 Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 12/89 (13%) Query: 31 IDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVEL 88 +DEA LI + K +L GD KQ+ + + E S Sbjct: 816 VDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQ-LQMRMHYNHEIS-------- 866 Query: 89 GVSVVRLNVQYRMHPEICRLPSNLFYEGN 117 V+R N+ R + + SNL YEG Sbjct: 867 -DRVLRKNISRRCTHTLTAIVSNLNYEGR 894 >tr:Q88431_SINDV Nonstructural polyprotein. Sindbis-like virus. Length = 2500 Score = 40.2 bits (93), Expect = 0.003 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Query: 27 DVVIIDEAAQALE--AECLIPLLLAKKKFILVGDHKQ 61 +V+ +DEA + LI ++ +KK +L GD KQ Sbjct: 787 EVLYVDEAFRCHAGALLALIAIVRPRKKVVLCGDPKQ 823 >tr:Q18630_CAEEL Hypothetical protein C44H9.2. Caenorhabditis elegans. Length = 755 Score = 40.2 bits (93), Expect = 0.003 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 3/62 (4%) Query: 6 AMTCTGAASKRKSLALEKF--KFDVVIIDEAAQALEAECLIPLLLA-KKKFILVGDHKQL 62 A K L + IDEA+Q E + L F LVGD KQL Sbjct: 664 PDVIVSTADSYKCLVKLDILKHVSNIQIDEASQLPEYTLIYLLQKFPNSGFGLVGDIKQL 723 Query: 63 PP 64 PP Sbjct: 724 PP 725 >tr:Q830V6_ENTFA Helicase, putative, RecD/TraA family. Enterococcus faecalis (Streptococcus faecalis). Length = 865 Score = 40.2 bits (93), Expect = 0.004 Identities = 44/218 (20%), Positives = 70/218 (32%), Gaps = 55/218 (25%) Query: 15 KRKSLALEKFKFDVVIIDEAAQALEAECLIP--LLLA---KKKFILVGDHKQLPPTIKSK 69 K SL ++ + ++I+DE + + + LL A + I VGD QLP Sbjct: 434 KNPSLTAKELEGGLLIVDEMSMV---DTWLANTLLKAIPTNMQVIFVGDKDQLPSV---- 486 Query: 70 KAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRL 129 G + L + L + LN YR +P Sbjct: 487 ------GPGQVLHDLLQINEIPKCELNEIYRQGDGSSIIP----------------LAHE 524 Query: 130 EYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPP 189 + P F Q F + G E E++ +IV G P Sbjct: 525 IKEGKLPADFQKNQKDRSF-FASDIGHIE--------------EYIRQIVTKAKAKGFTP 569 Query: 190 EDIGVITP-YNGQV--ELIRNILNSRCS---LKPVEVS 221 +DI V+ P Y G + + ++ + K EV Sbjct: 570 QDIQVLAPMYRGAAGIDALNKMMQEIFNPNDGKKKEVK 607 >tr:Q7VGG3_HELHP DNA helicase II. Helicobacter hepaticus. Length = 704 Score = 40.2 bits (93), Expect = 0.004 Identities = 53/234 (22%), Positives = 78/234 (33%), Gaps = 36/234 (15%) Query: 25 KFDVVIIDEAAQALEAE--CLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 K+ +++DE E + L L LA +VGD Q + A K L Sbjct: 221 KYHYIMVDEYQDTNEIQYKILKRLCLAHTNLCVVGDDDQ--SIYGWRGANVKNILG---- 274 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTP 142 V VV+L YR +I + L S G Sbjct: 275 FPKEFDEVKVVKLEENYRSSEQILNAANALISHN----------------SKRLGKNLKS 318 Query: 143 QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQV 202 + V E E S EAEF+ + + LL G+ P +I V+ N Sbjct: 319 IKGAGAN------VRVIESENES----TEAEFLAKDILTLLSQGINPSEIAVLFRVNALS 368 Query: 203 ELIRNILNSRCSLKPVEVSTVDSFQGRE-KDIIILSLVRSNRNGEIGFLRDERR 255 I N R + + V ++ E KD++ + N N + FLR R Sbjct: 369 RSIEEGFN-RAKIPYKIIGAVRFYERAEIKDLLCYLRLIVNPNDDYSFLRIINR 421 >tr:Q5LY80_STRT1 ATP-dependent exonuclease, subunit A. Streptococcus thermophilus (strain CNRZ 1066). Length = 1217 Score = 39.8 bits (92), Expect = 0.004 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 13/180 (7%) Query: 29 VIIDEAAQ--ALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLV 86 V++DE Q + E ++ LL +VGD KQ + A + F+ + Sbjct: 415 VMVDE-YQDNSHTQERMLELLSNGHNRFMVGDIKQ----SIYRFRQADPQIFNDKFQLFL 469 Query: 87 EL--GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTP-- 142 E ++ L +R E+ + +F + + A P Sbjct: 470 ENPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSQKQKEPHP 529 Query: 143 --QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 + V + D S E+E + GE V++ + L GV EDI ++ P Sbjct: 530 ENETEVLIYNSDESSTSEDEEGPDQAISSGEISLVIKEIIKLHEQGVRFEDITLLAPNRN 589 >tr:Q4ZL80_PSESY UvrD/REP helicase. Pseudomonas syringae pv. syringae B728a. Length = 727 Score = 39.8 bits (92), Expect = 0.004 Identities = 44/231 (19%), Positives = 74/231 (32%), Gaps = 52/231 (22%) Query: 23 KFKFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAA-AKAGLEE 79 + +F V++DE A++ L L ++VGD Q + A Sbjct: 213 QRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVVGDDDQ--SIYGWRGAKIENIHQYS 270 Query: 80 SLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFF 139 S F V+RL YR I + + G Sbjct: 271 SDFP-----DTEVIRLEQNYRSTASILKAAN--------------------------GLI 299 Query: 140 PTPQFIVPLSFVDNSGVEEEEPEGYSYQN-PGEAEFVVEIVEYLLRSGVPPEDIGVITPY 198 + + G E Y+ N EA +VVE +E L++G+ DI ++ Sbjct: 300 INNSGRLGKELWTDVGDGELI-NLYAAFNEHDEARYVVETIESALKTGISRNDIAILYRS 358 Query: 199 NGQVE-----LIRNILNSRC-----SLKPVEVSTVDSF----QGREKDIII 235 N Q L+R + R + E+ ++ +GR D + Sbjct: 359 NAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAAL 409 >tr:Q5M2T7_STRT2 ATP-dependent exonuclease, subunit A. Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311). Length = 1217 Score = 39.8 bits (92), Expect = 0.004 Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 13/180 (7%) Query: 29 VIIDEAAQ--ALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLV 86 V++DE Q + E ++ LL +VGD KQ + A + F+ + Sbjct: 415 VMVDE-YQDNSHTQERMLELLSNGHNRFMVGDIKQ----SIYRFRQADPQIFNDKFQLFL 469 Query: 87 EL--GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTP-- 142 E ++ L +R E+ + +F + + A P Sbjct: 470 ENPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSQKQKEPHP 529 Query: 143 --QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 + V + D S E+E + GE V++ + L GV EDI ++ P Sbjct: 530 ENETEVLIYNSDESSTSEDEEGPDQAISSGEISLVIKEIIKLHEQGVRFEDITLLAPNRN 589 >tr:Q7VBG7_PROMA DNA helicase related to phage enzyme. Prochlorococcus marinus. Length = 479 Score = 39.8 bits (92), Expect = 0.004 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Query: 28 VVIIDEAAQA--LEAECLIPLLL-AKKKFILVGDHKQLPPT 65 +V++DEA+ E +I + + + VGD QLPP Sbjct: 122 LVLVDEASMVDSNLLEIVITCAHSHETRLVFVGDPAQLPPV 162 >tr:Q8NQQ3_CORGL Hypothetical protein Cgl1373. Corynebacterium glutamicum (Brevibacterium flavum). Length = 783 Score = 39.8 bits (92), Expect = 0.004 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 28 VVIIDEAAQALEAECLIPLLLAKKKFI-LVGDHKQLPPTIKSKKAAAKAGLEESLFERLV 86 VI+DEA + E + + +++ LVGD Q S F V Sbjct: 597 HVIVDEAQELSPMEWRMVFRRSPSRWMTLVGDIAQ----TGSPAGVDDWAESLWPF---V 649 Query: 87 ELGVSVVRLNVQYRMHPEICRLPSNL 112 E L V YR EI + + L Sbjct: 650 EKRFRHHELTVNYRTPAEIMSVANEL 675 >tr:Q84HT7_RHIET Probable conjugal transfer protein TraA. Rhizobium etli. Length = 1103 Score = 39.8 bits (92), Expect = 0.004 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 10/85 (11%) Query: 28 VVIIDEAAQAL---EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 V ++DEA A + + A K +LVGD +QL P ++ +R Sbjct: 471 VFVLDEAGMVSSRQMALFVEAVTKAGAKLVLVGDPEQLQPI-------EAGAAFRAIADR 523 Query: 85 LVELGVSVVRLNVQYRMHPEICRLP 109 + + + Q M L Sbjct: 524 IGYAELETIYRQRQQWMRDASLDLA 548 >tr:Q6M5I5_CORGL Superfamily I DNA or RNA helicase. Corynebacterium glutamicum (Brevibacterium flavum). Length = 755 Score = 39.8 bits (92), Expect = 0.004 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 28 VVIIDEAAQALEAECLIPLLLAKKKFI-LVGDHKQLPPTIKSKKAAAKAGLEESLFERLV 86 VI+DEA + E + + +++ LVGD Q S F V Sbjct: 569 HVIVDEAQELSPMEWRMVFRRSPSRWMTLVGDIAQ----TGSPAGVDDWAESLWPF---V 621 Query: 87 ELGVSVVRLNVQYRMHPEICRLPSNL 112 E L V YR EI + + L Sbjct: 622 EKRFRHHELTVNYRTPAEIMSVANEL 647 >tr:Q92GJ9_RICCN Hypothetical protein. Rickettsia conorii. Length = 121 Score = 39.8 bits (92), Expect = 0.004 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 10/56 (17%) Query: 191 DIGVITPYNGQVELIRNILNSRCSLKPVE----------VSTVDSFQGREKDIIIL 236 I +IT Y E IR LN E ++T+ +FQG E D +I+ Sbjct: 4 QIYIITMYKDYSESIRRKLNEIYDDSRYEKTIQVFGYKNIATIHAFQGTENDTVII 59 >tr:Q7P9M6_RICSI ATP-dependent helicase. Rickettsia sibirica. Length = 822 Score = 39.8 bits (92), Expect = 0.005 Identities = 43/254 (16%), Positives = 78/254 (30%), Gaps = 41/254 (16%) Query: 18 SLALEKFKFDVVIIDEA-----AQALEAECLI----PLLLAKKKFILVGDHKQLPPTIKS 68 L + + + +++DEA +Q LI + +VGD KQ +I S Sbjct: 336 LLHKLESEINHILVDEAQDTSPSQWNIITTLITEFNAVERPNNSVFIVGDDKQ---SIFS 392 Query: 69 KKAAAKAGLEESLFERL------VELGVSVVRLNVQYRMHPEICRLPSNL---FYEGNGL 119 + A ERL + L YR EI + N+ Sbjct: 393 FQGADLRNFNLVN-ERLKANLTNANKKFKNITLEYSYRSCTEILQFTYNVLKNIKSNYPG 451 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAE-FVVEI 178 + +S+ + + P E Y+N A ++E Sbjct: 452 LFLSNNPLISSFRTHQGSVTVWP------LVTSEKQEELFWALPEDYENSKSAADLLIEK 505 Query: 179 VEYLLRSGVPPEDIGVITPYN----------GQVELIRNILNSRCSLKPVEVSTVDSFQG 228 + ++ + E+I T + + N L S ++V D Sbjct: 506 IVNFIKEQIESEEILPSTANRISEKDFMILVRKRDEFSNNLIKELSKAKLKVEVSDRMNL 565 Query: 229 REKDII--ILSLVR 240 +E I ++SL + Sbjct: 566 KENLTIMDLISLAK 579 >tr:O26077_HELPY Helicase. Helicobacter pylori (Campylobacter pylori). Length = 945 Score = 39.8 bits (92), Expect = 0.005 Identities = 34/164 (20%), Positives = 54/164 (32%), Gaps = 25/164 (15%) Query: 51 KKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPS 110 + VGD KQ A G SLFE V L +R P I + Sbjct: 382 RSVFFVGDVKQ--------SIYAFRGSFSSLFES-VSKDFYHDNLEFNHRSAPLIINYVN 432 Query: 111 NLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG 170 +F + + + ++ S N V +S V + + Sbjct: 433 TIFKKAYQNSPTAYLEQKYPKTSQNK---HVTDGYVKVSLVADERELLLDQ--------- 480 Query: 171 EAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS 214 V++ + LL + P+DI ++ N I+N L R S Sbjct: 481 ----VLQEAQNLLEHRIEPKDITILCATNDDALEIKNYLQERLS 520 >tr:Q9AL65_SHIFL Hypothetical protein. Shigella flexneri 2a. Length = 774 Score = 39.4 bits (91), Expect = 0.005 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 14/78 (17%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKF-------------DVVIIDEAAQALEAECLIPLL 47 K+ ++ + + K D++I+DEA Q L Sbjct: 653 RMKLTPCVVMTCYMLPGNMQISEHKGQRKFEKSYLYDFADLLIVDEAGQVLPEVAAASFA 712 Query: 48 LAKKKFILVGDHKQLPPT 65 LAKK + +GD +Q+ Sbjct: 713 LAKKALV-IGDTEQIRQY 729 >tr:Q6CUM9_KLULA Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y- 1140 of Kluyveromyces lactis. Kluyveromyces lactis (Yeast). Length = 708 Score = 39.4 bits (91), Expect = 0.005 Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 31/185 (16%) Query: 28 VVIIDEAAQALEAECLIPL--LLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERL 85 V+IIDE Q L L LL +K F++ GD Q + + + + E R Sbjct: 218 VLIIDE-FQDLYPGIFKLLKTLLGQKHFLIFGDINQ--SIYEFLGSNKEV-MSELDRLRP 273 Query: 86 VELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFI 145 + + + +R PEI + + + Sbjct: 274 DDKKFTKYIHD-NFRSTPEITAAANAVI-----------NQTVPVQIKRENIV---EKHP 318 Query: 146 VPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELI 205 + + + E E +F+V + L+ S DIG++ N + I Sbjct: 319 SGVYPIKYNCEEL----------IDELDFIVSEICQLVCSSAKLSDIGILARTNSHSKAI 368 Query: 206 RNILN 210 + L+ Sbjct: 369 ADHLS 373 >tr:Q9YRB3_9VIRU RNA-dependent RNA polymerase. Nudaurelia capensis beta virus. Length = 1925 Score = 39.4 bits (91), Expect = 0.005 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 9/103 (8%) Query: 9 CTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLA--KKKFILVGDHKQLPPTI 66 A + FDV++IDEA + A + + A + + +GD Q+ Sbjct: 612 TYHNALHVAAKESGNRPFDVIVIDEA-ETTPACYVGTMHHASPSSRIVCLGDPHQIGYID 670 Query: 67 KSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLP 109 S + ++ R N YR ++ LP Sbjct: 671 FSDRKDDLKPFS------IIAAECRTRRFNTTYRCPQDVLNLP 707 >tr:Q6MSK3_MYCMS ATP-dependent DNA helicase (EC 3.6.1.-). Mycoplasma mycoides (subsp. mycoides SC). Length = 722 Score = 39.4 bits (91), Expect = 0.005 Identities = 40/222 (18%), Positives = 71/222 (31%), Gaps = 42/222 (18%) Query: 17 KSLALEKFKFDVVIIDEAAQALEA--ECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAK 74 + L K +D V++DE + + L + VGD Q TI S Sbjct: 210 EILNKWKNSYDYVLVDEFQDTNDIQFNLIKFLTINTNHLTAVGDPDQ---TIYS---WRG 263 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 L+ L + LN YR +I + + Sbjct: 264 TKLDIILNFNKTYSNAISIVLNQNYRSTKQILDISN------------------------ 299 Query: 135 NPGFFPTPQFIVPLSFVDNS--GVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDI 192 F +F N+ G + E S + EA +V ++ L++ G +DI Sbjct: 300 --SFIKNNKFREHKEIYTNNKTGKKVVLKECNSKTS--EASYVSFKIKELIKQGYHYKDI 355 Query: 193 GVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDII 234 ++ N + L +R + + + RE+ +I Sbjct: 356 FILYRMNAWSQEFEKELINRKIPFQL----IGGIKFRERKVI 393 >tr:Q7U7R3_SYNPX Probable exodeoxyribonuclease V, alpha subunit RecD (EC 3.1.11.5). Synechococcus sp. (strain WH8102). Length = 517 Score = 39.4 bits (91), Expect = 0.005 Identities = 31/157 (19%), Positives = 52/157 (33%), Gaps = 20/157 (12%) Query: 12 AASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK---KFILVGDHKQLPPT--- 65 A + + D++++DE + + E + LL A + +LVGD QLPP Sbjct: 198 AGDGFRRHRQRPLELDLLVVDEMSMV-DLELMSALLEALPDACRLLLVGDPAQLPPVGSG 256 Query: 66 IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSV 125 ++ A E G + V L YR + L + L ++ Sbjct: 257 AVWQRLQDPAVRE--------RFGSAAVHLLHTYRNRGALAALATTL---RQQGIEAFRR 305 Query: 126 ARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPE 162 +AN +P S D G + Sbjct: 306 DLEQLPATANVQHQRASLRRLPPSVRD--GWRDRHQR 340 >tr:Q8FR36_COREF Putative ATP-dependent DNA helicase. Corynebacterium efficiens. Length = 825 Score = 39.4 bits (91), Expect = 0.005 Identities = 34/206 (16%), Positives = 59/206 (28%), Gaps = 48/206 (23%) Query: 23 KFKFDVVIIDEAAQALEAE-CLIPLLLA-----KKKFILVGDHKQLPPTIKSKKAAAKAG 76 + +F V+IDE A+ LI +L+ + +VGD Q Sbjct: 254 RRRFRHVLIDEYQDTNHAQYQLIAILVGRPDQDPSELCVVGDSDQ-SIYAFRGATIRNIE 312 Query: 77 LEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANP 136 E F + L YR I + + + Sbjct: 313 EFERDFT-----DARTILLEQNYRSTQTILSAANAVISQNEN------------------ 349 Query: 137 GFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVIT 196 P + G E+ + EA F+ ++ L G+ D+ ++ Sbjct: 350 --------RRPKNLWTALGEGEKIIGYVADNEHDEARFIASEIDELADRGLSYSDMAIM- 400 Query: 197 PYNGQVELIRNILNSRCSLKPVEVST 222 Y NS +L+ V + T Sbjct: 401 -YRTN--------NSSRALEEVFIRT 417 >tr:Q5XZF4_EEEV Nonstructural protein. Eastern equine encephalitis virus (Eastern equine encephalomyelitis virus). Length = 2494 Score = 39.4 bits (91), Expect = 0.006 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Query: 23 KFKFDVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 K D + IDEA A LI ++ KK +L GD KQ Sbjct: 776 KHSVDTLYIDEAFACHAGTLLALIAIVK-PKKVVLCGDPKQ 815 >tr:Q66580_EEEV Eastern Equine Encephalomyelitis Virus RNA sequence. Eastern equine encephalitis virus (Eastern equine encephalomyelitis virus). Length = 1878 Score = 39.4 bits (91), Expect = 0.006 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Query: 23 KFKFDVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 K D + IDEA A LI ++ KK +L GD KQ Sbjct: 775 KHSVDTLYIDEAFACHAGTLLALIAIVK-PKKVVLCGDPKQ 814 >tr:Q92GJ7_RICCN Hypothetical protein. Rickettsia conorii. Length = 133 Score = 39.4 bits (91), Expect = 0.006 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 2/70 (2%) Query: 3 KVVAMTCTGAASKRKSLALEKFK-FDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 V+ + T S K LA + + IDEA Q + + K ++VGD Q Sbjct: 20 MVIPVVSTTFHSFDKMLATSEHNAIPWLFIDEAGQIPPQYAASAIYKST-KVVVVGDPLQ 78 Query: 62 LPPTIKSKKA 71 P K+ Sbjct: 79 TDPISILKQD 88 >tr:Q88789_EEEV Nonstructural polyprotein. Eastern equine encephalitis virus (Eastern equine encephalomyelitis virus). Length = 2493 Score = 39.4 bits (91), Expect = 0.006 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Query: 23 KFKFDVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 K D + IDEA A LI ++ KK +L GD KQ Sbjct: 775 KHSVDTLYIDEAFACHAGTLLALIAIVK-PKKVVLCGDPKQ 814 >tr:Q8FTQ9_COREF Hypothetical protein. Corynebacterium efficiens. Length = 781 Score = 39.4 bits (91), Expect = 0.006 Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 11/156 (7%) Query: 28 VVIIDEAAQALEAECLIPLLLAKKKFI-LVGDHKQLPPTIKSKKAAAKAGLEESLFERLV 86 VI+DEA + E + + +++ LVGD Q A E + Sbjct: 589 HVIVDEAQELSPMEWRMVFRRSPSRWMTLVGDIAQTGSPAGVDDWAET-------LEPFI 641 Query: 87 ELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIV 146 L V YR EI L + + + N + ++ R ++ G + Sbjct: 642 NNRFRHHELTVNYRTPSEIMVLANRILAQINPGMTPATAIRDSGHEVRYLGAGADVDKLK 701 Query: 147 PLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYL 182 +F D+ PGE +VV+ ++ L Sbjct: 702 -EAFDDDRLTAVISSRATF--TPGEHHYVVDEIKGL 734 >tr:Q7V6P2_PROMM Conserved hypothetical (EC 3.1.11.5). Prochlorococcus marinus (strain MIT 9313). Length = 490 Score = 39.0 bits (90), Expect = 0.007 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 18/84 (21%) Query: 28 VVIIDEAAQALEAECLIPLLLAK-----KKFILVGDHKQLPPT------IKSKKAAAKAG 76 +V+IDE++ L+ L L + + VGD QLPP + S A A Sbjct: 128 LVLIDESSMID--STLLGLALQCAHPFRTRLVFVGDPAQLPPIGEAQSPVFSMHRACTAT 185 Query: 77 LEESLFERLVELGVSVVRLNVQYR 100 L++ +V V+RL + R Sbjct: 186 LQQ-----VVRHQGPVLRLASRLR 204 >tr:P87515_BFV Nonstructural polyprotein. Barmah forest virus. Length = 1794 Score = 39.0 bits (90), Expect = 0.007 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Query: 23 KFKFDVVIIDEAAQALEAECL--IPLLLAKKKFILVGDHKQ 61 K +++ IDEA L I ++ K+K +L GD KQ Sbjct: 776 KHTPNILYIDEAFSCHAGTLLATIAIVRPKQKVVLCGDPKQ 816 >tr:O34481_BACSU YrrC protein. Bacillus subtilis. Length = 798 Score = 39.0 bits (90), Expect = 0.007 Identities = 37/179 (20%), Positives = 59/179 (32%), Gaps = 50/179 (27%) Query: 28 VVIIDEAAQALEAECLIPLLLAKK-----KFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 ++IIDEA+ + + L K + I+VGD QLP G + L Sbjct: 453 LLIIDEASM---LDIWLANHLFKAIPDHIQIIIVGDEDQLPSV----------GPGQVLR 499 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTP 142 + L + VRL YR EG+ +V+++ Sbjct: 500 DLLASQVIPTVRLTDIYRQA------------EGSSIVELAH---------QMKNGLLPN 538 Query: 143 QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITP-YNG 200 P + + E V ++V L+ G +DI V+ P Y G Sbjct: 539 NLTAPTKDRSFIRCGGSQIK----------EVVEKVVANALKKGYTAKDIQVLAPMYRG 587 >tr:Q5QUQ9_IDILO ATP-dependent exoDNAse (Exonuclease V), alpha subunit, superfamily I helicase. Idiomarina loihiensis. Length = 647 Score = 39.0 bits (90), Expect = 0.007 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%) Query: 22 EKFKFDVVIIDEAAQALEAECLIPLLLA---KKKFILVGDHKQLPPT 65 + DVVI+DEA+ + E + LL A + +L+GD QL Sbjct: 294 NPLRTDVVIVDEASMI-DIEMMTALLKATPKNARLVLIGDKDQLASV 339 >tr:Q984L8_RHILO ATP-dependent DNA helicase. Rhizobium loti (Mesorhizobium loti). Length = 697 Score = 39.0 bits (90), Expect = 0.007 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 7/91 (7%) Query: 25 KFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 +FD V++DE L+A L+ L +VGD Q +I S +AA + + F Sbjct: 244 RFDHVLVDEYQDTNRLQASILMALKPDGAGLTVVGDDAQ---SIYSFRAAEVRNILD--F 298 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNLF 113 R VV L YR I + + Sbjct: 299 PRQFAQAADVVMLERNYRSTETILAAANAVI 329 >tr:Q92GK9_RICCN ATP-dependent helicase. Rickettsia conorii. Length = 822 Score = 39.0 bits (90), Expect = 0.007 Identities = 43/254 (16%), Positives = 79/254 (31%), Gaps = 41/254 (16%) Query: 18 SLALEKFKFDVVIIDEA-----AQALEAECLI----PLLLAKKKFILVGDHKQLPPTIKS 68 L + + + +++DEA +Q LI + +VGD KQ +I S Sbjct: 336 LLHKLESEINHILVDEAQDTSPSQWNIITTLITEFNAVERPNNSVFIVGDDKQ---SIFS 392 Query: 69 KKAAAKAGLEESLFERL------VELGVSVVRLNVQYRMHPEICRLPSNL---FYEGNGL 119 + A ERL + L YR EI + N+ Sbjct: 393 FQGADLRNFNLVN-ERLKANLTNANKKFKNITLEYSYRSCTEILQFTYNVLKNIKSNYPG 451 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAE-FVVEI 178 + +S+ + + P E Y+N A ++E Sbjct: 452 LFLSNNPLISSFRTHQGSVTVWP------LVTSEKQEELFWALPEDYENSKSAADLLIEK 505 Query: 179 VEYLLRSGVPPEDIGVITPYN----------GQVELIRNILNSRCSLKPVEVSTVDSFQG 228 + ++ + E+I T + + + N L S ++V D Sbjct: 506 IVNFIKEQIESEEILPSTAHRISEKDFMILVRKRDEFSNNLIKELSKAKLKVEVSDRMNL 565 Query: 229 REKDII--ILSLVR 240 +E I ++SL + Sbjct: 566 KENLTIMDLISLAK 579 >tr:Q8X013_NEUCR Hypothetical protein B23D6.110. Neurospora crassa. Length = 776 Score = 39.0 bits (90), Expect = 0.007 Identities = 37/245 (15%), Positives = 75/245 (30%), Gaps = 72/245 (29%) Query: 26 FDVVIIDE---AAQAL--EAECLIPLLLAKK-----KFILVGDHKQLPPTIKSKKAAAKA 75 FD++++DE + L C I K + +++GD +Q + A + Sbjct: 163 FDIIVLDEFQDCTKLLFWLINCFILANDQKAGGQSARLVVLGDERQ--AIYGFRGADDRY 220 Query: 76 GLEESLFERLVE-LGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 +V +LN +R+ + + + F G + S Sbjct: 221 LTSAPDLLGIVSPYPFIKAQLNRSFRLSDQSVQFINKTFLSGESYITSSK---------- 270 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYL--LRSGVPPEDI 192 P + + L L ++ Sbjct: 271 --------------------------PGPKPIILRCHLRNSYALAKQLSSLLERYGAKNT 304 Query: 193 GVITPYNGQVELIRNI---------------------LNSRCSLKPVEVSTVDSFQGREK 231 +I P G+ EL++++ L+ R + V+T+ F+G E+ Sbjct: 305 AIIAPAVGKRELLQDVVNILSVKYRVPISVSINDEVPLDDRVIKGKLCVATIHQFKGSER 364 Query: 232 DIIIL 236 D++IL Sbjct: 365 DLVIL 369 >tr:Q5UQ92_MIMIV Putative DNA helicase. Mimivirus. Length = 494 Score = 39.0 bits (90), Expect = 0.008 Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 21/176 (11%) Query: 14 SKRKSLALEKFKFDVVIIDEAAQALEA---ECLIPLLLAKKKFILVGDHKQLPPT----- 65 S ++S L+ ++V+IDE + + E + L K I +GD KQLPP Sbjct: 113 STKESKFLKNISKNLVVIDECSMISQEMVDELNKYINLYPIKIIYMGDPKQLPPVGEVES 172 Query: 66 IKSKKAAAKAGLEESLFERLVELGV-------SVVRLNVQYRMHPEICRLPSN------L 112 + L E + V + N+ +++ ++ + +N Sbjct: 173 LIFSTIPNNYQYHIVLDEIMRTNSVDIKAVCSVIRNWNLNDQINQKLIDVFNNSTTRRFR 232 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQN 168 Y + SS + + N + S N+ + + + N Sbjct: 233 MYHIRNDYNKSSWFKSFIKEIQNNEVPIILTWKNSTSDYYNNIIRKFIHKSEEIDN 288 >tr:Q54FC2_DICDI Hypothetical protein. Dictyostelium discoideum (Slime mold). Length = 392 Score = 39.0 bits (90), Expect = 0.008 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGD 58 + ++ + S K L +K FD VIIDE+ L+ CL+P+L KK I++ D Sbjct: 334 NESRIILSSSNINSLDKFL-KDKNDFDWVIIDESNLILDKTCLVPILKG-KKLIVISD 389 >tr:Q5Y5T0_9VIRU Helicase (Fragment). Avian hepatitis E virus. Length = 138 Score = 39.0 bits (90), Expect = 0.008 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 29 VIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKA 71 VI DEA A+ L+ L + +++GD Q+P + Sbjct: 22 VIXDEAY-AIPPHLLVASLRRARDVVMLGDPHQIPALDFDGRC 63 >tr:Q82IR1_STRAW Putative ATP-dependent DNA helicase. Streptomyces avermitilis. Length = 770 Score = 39.0 bits (90), Expect = 0.008 Identities = 39/165 (23%), Positives = 55/165 (33%), Gaps = 29/165 (17%) Query: 55 LVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFY 114 +VGD Q TI S A L L R G +VV+L YR P++ L + Sbjct: 298 VVGDASQ---TIYSFTGATPDHL---LDFRTRHPGATVVKLVRDYRSSPQVVHLAN---- 347 Query: 115 EGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEF 174 + + R E+ Q V +E P EAE Sbjct: 348 ----GLLAQARGRAAEHRLELIS-----QREPGPEPVYTEYTDE----------PAEAEG 388 Query: 175 VVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVE 219 + LL SGVP +I ++ N Q E+ L + Sbjct: 389 AARRIRDLLASGVPAAEIAILFRTNSQSEIYEQALADAGVPYQLR 433 >tr:Q9WJF1_SINDV Nonstructural protein. Sindbis-like virus YN87448. Length = 1900 Score = 39.0 bits (90), Expect = 0.008 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Query: 27 DVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 +V+ +DEA A LI ++ +KK +L GD KQ Sbjct: 787 EVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPKQ 823 >tr:Q9YJX6_SINDV P270 nonstructural polyprotein. Sindbis-like virus YN87448. Length = 2517 Score = 39.0 bits (90), Expect = 0.008 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Query: 27 DVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 +V+ +DEA A LI ++ +KK +L GD KQ Sbjct: 787 EVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPKQ 823 >tr:Q8A9U4_BACTN DNA repair and recombination protein, putative helicase. Bacteroides thetaiotaomicron. Length = 848 Score = 38.6 bits (89), Expect = 0.008 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 21/117 (17%) Query: 4 VVAMTCTGAA--SKRKSLALEK--FKFDVVIIDEAAQALEAECL----IPLLLAKKK--- 52 V T +A R S D+++IDE + A+ L L + + Sbjct: 75 FVPETTFNSAKMHYRFSKEKRNIIRSMDLLVIDEISMVR-ADLLDAVDAALRRYRDREKP 133 Query: 53 -----FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQ----YR 100 +++GD +QL P +K + E+ + V + ++ YR Sbjct: 134 FGGVQLLMIGDLQQLAPVVKDNEWELLKNHYETPYFFASRALKETVYMTIELKKVYR 190 >tr:O90368_9VIRU Nonstructural polyprotein. O'nyong-nyong virus. Length = 2513 Score = 38.6 bits (89), Expect = 0.008 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQ 61 +V+ +DEA LI ++ ++K +L GD KQ Sbjct: 782 EVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQ 818 >tr:O90370_9VIRU Nonstructural polyprotein. Igbo Ora virus. Length = 2513 Score = 38.6 bits (89), Expect = 0.008 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQ 61 +V+ +DEA LI ++ ++K +L GD KQ Sbjct: 782 EVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQ 818 >tr:Q65TK4_MANSM RecB protein. Mannheimia succiniciproducens (strain MBEL55E). Length = 1205 Score = 38.6 bits (89), Expect = 0.009 Identities = 42/222 (18%), Positives = 73/222 (32%), Gaps = 33/222 (14%) Query: 10 TGAASKRKSLALEKFKFDVVIIDE-----AAQALEAE-CLIPLLLAKKKFILVGDHKQLP 63 + + L ++++ +IDE A Q I A+ FI++GD KQ Sbjct: 369 VSPEHGNELVKLIRYQYPFAMIDEFQDTDAQQYQIFSKIYIESAQAETGFIMIGDPKQ-- 426 Query: 64 PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS 123 + + A L+ + + L YR + + LF N Sbjct: 427 AIYQFRGADIFTYLKAAQQAKYH------FTLGKNYRSEGNLIHAVNQLF---NFSSAQP 477 Query: 124 SVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGE-AEFVVEIVEYL 182 + +E+ S PG Q L+ + + E S + E + L Sbjct: 478 FLYENIEFSSVEPGKA---QGRFILNEQQEAPLGVYLGEEPSDEQLAETCANCISQWLQL 534 Query: 183 LRS------------GVPPEDIGVITPYNGQVELIRNILNSR 212 + P+DI V+ + ELI+N L +R Sbjct: 535 ALRERAGIQTAEKFLPLEPKDIAVLVRNAKEAELIKNALQAR 576 >tr:Q733Z1_BACC1 Hypothetical protein. Bacillus cereus (strain ATCC 10987). Length = 768 Score = 38.6 bits (89), Expect = 0.010 Identities = 34/175 (19%), Positives = 55/175 (31%), Gaps = 20/175 (11%) Query: 50 KKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLP 109 K K+ L+GD Q I S + +LF V V+LN YR I Sbjct: 557 KAKWTLLGDLNQN---IFSHDYNRENNFISALF---ANRKVETVQLNRSYRSTKPIIEFT 610 Query: 110 SNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY--- 166 + GN + + ++ Y + I E EE + Sbjct: 611 KCMIPNGNDIEAFNRDGKKPVYIKVSDEREHVENMIF-------KVKELEEKGHKTIAVI 663 Query: 167 -QNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEV 220 + E V+E++ L + ++ T Y V +I L V + Sbjct: 664 CKTNEECMKVMELIGNTLHVHLMKKE---NTTYEKGVVVIPAYLAKGIEFDAVII 715 >tr:Q6T1E7_CVHSA Orf1ab polyprotein (Fragment). SARS coronavirus CUHK-L2. Length = 225 Score = 38.6 bits (89), Expect = 0.010 Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 155 GVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS 214 + S N + V E L I+PYN Q + IL Sbjct: 59 YKGVITHDVSSAINRPQIGVVRE----FLTRNPAWRKAVFISPYNSQNAVASKIL----- 109 Query: 215 LKPVEVSTVDSFQGREKDIIILSLVRSNRNGEIGFLRDERRLNV 258 + TVDS QG E D +I + + E + R NV Sbjct: 110 --GLPTQTVDSSQGSEYDYVIFT-----QTTETAHSCNVNRFNV 146 >tr:Q7UIR9_RHOBA ATP-dependent DNA helicase (EC 3.6.1.-). Rhodopirellula baltica. Length = 787 Score = 38.6 bits (89), Expect = 0.010 Identities = 34/205 (16%), Positives = 57/205 (27%), Gaps = 34/205 (16%) Query: 28 VVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERL 85 +++DE + + L + + GD Q + A L L Sbjct: 212 YIMVDEYQDTNLAQYAIVRALSVDHPNLAVTGDPDQ--SVYGWRG----ADLNNILDFEK 265 Query: 86 VELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFI 145 V VRL YR PEI R+ L F P Sbjct: 266 DYPAVKTVRLEQNYRSTPEILRVADQLIRHNR-------------RRKQKNLFTDNPTGE 312 Query: 146 VPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELI 205 G +E + N ++ P D ++ N I Sbjct: 313 AVTLRQYEDGYKEADGIADEIAN------------QMIAGNAEPRDFAIMCRMNALTRSI 360 Query: 206 RNILNSRCSLKPVEVSTVDSFQGRE 230 + L +R + V+ ++ +Q +E Sbjct: 361 EHALRNRGIPYQI-VNGLEFYQRKE 384 >tr:Q6M4L4_CORGL Superfamily I DNA or RNA helicase. Corynebacterium glutamicum (Brevibacterium flavum). Length = 1255 Score = 38.6 bits (89), Expect = 0.010 Identities = 30/148 (20%), Positives = 37/148 (25%), Gaps = 16/148 (10%) Query: 12 AASKRKSLALEKFKFDVVIIDEAAQALEAE---CLIPLLLAKKKFILVGDHKQLPPTIKS 68 L +IIDE E L LVGD Q Sbjct: 646 CYLLLDKLIEPHASPKYLIIDEVQDNSVFEFVFALRFAAKHNTSLYLVGDSSQ----TLY 701 Query: 69 KKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARR 128 + +A SL RL YR + EI + L DI + Sbjct: 702 EFRSANPKALNSLE---ASGVFGTYRLTTNYRSNQEILDFANIH------LSDIEANQFA 752 Query: 129 LEYDSANPGFFPTPQFIVPLSFVDNSGV 156 AN PT +D V Sbjct: 753 GIQLYANSFDAPTADSFKEKVELDMHHV 780 >tr:Q8FLJ3_COREF Putative conjugal transfer protein traA. Corynebacterium efficiens. Length = 1154 Score = 38.6 bits (89), Expect = 0.010 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 13/79 (16%) Query: 28 VVIIDEAAQALEAECLIPL---LLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 VV++DEA + + L A+ K +LVGD Q A++G+ +L Sbjct: 568 VVVVDEAGMVATPDVVRLLEITRAAQAKIVLVGDPHQYAAV------KARSGMLATLAYE 621 Query: 85 LVELGVSVVRLNVQYRMHP 103 L + V L +R Sbjct: 622 LPD----AVELTEVFRQRD 636 >tr:Q64UA2_BACFR Putative helicase. Bacteroides fragilis. Length = 844 Score = 38.6 bits (89), Expect = 0.010 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 15/105 (14%) Query: 11 GAASKRKSLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKK---------KFILVGDH 59 G K D+++IDE + + + + +L + + +++GD Sbjct: 87 GFHKFGKEKINIIRSMDLLVIDEISMVRADQLDAIDAVLRRYRDRSKPFGGVQLLMIGDL 146 Query: 60 KQLPPTIKSKKAAAKAGLEESLFER----LVELGVSVVRLNVQYR 100 +QL P +K + + + ++ F L E + L YR Sbjct: 147 QQLAPVVKEEDWSLLSSYYDTAFFFGSHSLKETEYITIELKKVYR 191 >tr:Q9X0W5_THEMA ATP-dependent DNA helicase. Thermotoga maritima. Length = 648 Score = 38.6 bits (89), Expect = 0.010 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 2/82 (2%) Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 P+ VP + ++ EA FV + + L+ G PE+I V+ Y Sbjct: 314 LPRKSVPKELKPVKKDGMKPVVVKTWDRYEEARFVSQRILELIEEGFKPEEIAVL--YRS 371 Query: 201 QVELIRNILNSRCSLKPVEVST 222 + + S V + Sbjct: 372 HSHSLELQMELVRSRIDFRVLS 393 >tr:Q9PJD1_CHLMU ATP-dependent helicase PcrA. Chlamydia muridarum. Length = 634 Score = 38.3 bits (88), Expect = 0.012 Identities = 44/194 (22%), Positives = 64/194 (32%), Gaps = 28/194 (14%) Query: 29 VIIDEAAQALEAECLIPLLLAKKK--FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLV 86 ++IDE A+ LI LA +VGD Q S + A + L Sbjct: 210 LLIDEYQDTNHAQYLIAKRLAASHNNIFVVGDPDQ------SIYSWRGANISNILNFEQD 263 Query: 87 ELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDIS--SVARRLEYDSANPGFFPTPQF 144 VVRL YR I + L + +D + SV + G + Sbjct: 264 YPKALVVRLEENYRSCGTILEAANALIQNNSARLDKTLRSVKGPGDKIFCFTGKNDRDEA 323 Query: 145 IVPLSFVDNSGVEEEEP--------EGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVIT 196 L + N ++ P EA LL+ G P E IG I+ Sbjct: 324 EQVLEEISNLHSYKDIPLSHICILYRTNFQSQSFEAA--------LLKRGYPYEIIGGIS 375 Query: 197 PYNGQVELIRNILN 210 Y + I++IL Sbjct: 376 FYK--RKEIQDILA 387 >tr:Q6LB50_OLICA TraA. Oligotropha carboxidovorans (Pseudomonas carboxydovorans). Length = 1121 Score = 38.3 bits (88), Expect = 0.013 Identities = 24/110 (21%), Positives = 34/110 (30%), Gaps = 22/110 (20%) Query: 28 VVIIDEAAQAL---EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 V ++DEA A + + A K +LVGD +QL P +L +R Sbjct: 489 VFVLDEAGMVASRQMATFVEAVSRAGAKLVLVGDPEQLQPI-------EAGAAFRALVDR 541 Query: 85 LVELGVSVVRLNVQYR-----MHPEICRLPSNLFYEGNGLVDISSVARRL 129 + L YR M L G L R + Sbjct: 542 IGYAE-----LETIYRQKAQWMRDASLDLARGRV--GKALAAYRHYGRVM 584 >tr:Q87U01_PSESM DNA helicase II. Pseudomonas syringae (pv. tomato). Length = 727 Score = 38.3 bits (88), Expect = 0.014 Identities = 42/230 (18%), Positives = 76/230 (33%), Gaps = 50/230 (21%) Query: 23 KFKFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + +F V++DE A++ L L ++VGD Q + A + + + Sbjct: 213 QRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVVGDDDQ--SIYGWRGAKIE-NIHQY 269 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 + V+RL YR I + + G Sbjct: 270 SDDFPDTE---VIRLEQNYRSTASILKAAN--------------------------GLII 300 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQN-PGEAEFVVEIVEYLLRSGVPPEDIGVITPYN 199 + + G E Y+ N EA +VVE +E L++G+ DI ++ N Sbjct: 301 NNSGRLGKELWTDVGDGELI-NLYAAFNEHDEARYVVETIESALKTGISRNDIAILYRSN 359 Query: 200 GQVE-----LIRNILNSRC-----SLKPVEVSTVDSF----QGREKDIII 235 Q L+R + R + E+ ++ +GR D + Sbjct: 360 AQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAAL 409 >tr:Q9RPH5_MYCSM RecD. Mycobacterium smegmatis. Length = 554 Score = 38.3 bits (88), Expect = 0.014 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 11/86 (12%) Query: 27 DVVIIDEAAQA--LEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 DV+++DE + L+ + + + +LVGD QL + A A L E L R Sbjct: 251 DVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASV---EAGAVLADLVEGLGSR 307 Query: 85 LVELGVSVVRLNVQYRMHPEICRLPS 110 V L +R I L S Sbjct: 308 ------GVAELKTSHRFGESIGALAS 327 >tr:Q6MND7_BDEBA ATP-dependent DNA helicase (EC 3.6.1.-). Bdellovibrio bacteriovorus. Length = 672 Score = 38.3 bits (88), Expect = 0.014 Identities = 39/198 (19%), Positives = 63/198 (31%), Gaps = 32/198 (16%) Query: 15 KRKSLALEKFKFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAA 72 + L + F V++DE L+ + + ++ + +VGD Q + A Sbjct: 198 NPEILEKVQGMFTQVMVDEFQDTNRLQMDLIAQIVKSHNNIAVVGDDDQ--SIYGWRGAE 255 Query: 73 AKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYD 132 K L E V++L YR EI + + + + E Sbjct: 256 VKNILNFPQEFTPCE----VIKLERNYRSSAEILAVANAAISKNKNRHGKILRPQVAEDT 311 Query: 133 SANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDI 192 P F EE+ E EFVV + R G +D+ Sbjct: 312 GQLPELFIL--------------DREED----------ECEFVVTEILNFQRQGYSYKDM 347 Query: 193 GVITPYNGQVELIRNILN 210 V+ N Q LI + L Sbjct: 348 AVLYRSNTQGGLIESSLR 365 >tr:Q9RT63_DEIRA Exodeoxyribonuclease V, subunit RecD, putative. Deinococcus radiodurans. Length = 715 Score = 38.3 bits (88), Expect = 0.014 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Query: 26 FDVVIIDEAAQALEAE--CLIPLLLAKKKFILVGDHKQLPPT 65 +D++I+DE + +A L+ + + +LVGD QLPP Sbjct: 429 YDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPV 470 >tr:Q676H0_9RHIZ Probable conjugal transfer protein TraA. Agrobacterium tumefaciens. Length = 1044 Score = 37.9 bits (87), Expect = 0.014 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 10/97 (10%) Query: 25 KFDVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESL 81 + DV +IDEA A + K +LVGDH+QL +A + L Sbjct: 331 RGDVFVIDEAGMVGSRQLAHFIGEAEQRGAKIVLVGDHQQL-------QAISAGAPFRIL 383 Query: 82 FERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNG 118 ERL + +S +R Q ++ EG Sbjct: 384 AERLGHVELSEIRRQRQGWQREASVAFATHRTAEGLS 420 >tr:Q5HNT1_STAEQ Helicase, putative, RecD/TraA family. Staphylococcus epidermidis (strain ATCC 35984 / RP62A). Length = 810 Score = 37.9 bits (87), Expect = 0.015 Identities = 46/267 (17%), Positives = 92/267 (34%), Gaps = 48/267 (17%) Query: 17 KSLALEKFKFDVVIIDEAAQA-----LEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKA 71 + + + ++IIDE + + +PL + + + VGD QLP + Sbjct: 434 QDILENEINARLIIIDEMSMVDTWLFHQFLSAVPL---EAQIVFVGDEDQLPSVGPGQVF 490 Query: 72 AAKAGLE---ESLFERLVELGVSVVRLNVQYRM----HPEICRLPSNLFYEGNGLVDIS- 123 E + +++ +RM +I + + + G I Sbjct: 491 KDLIDSEIIPRVNLTEVYRQQDGSSIIDLAHRMKLNEPIDITKRYHDRSFIRCGTNQIPD 550 Query: 124 SVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNP----------GEAE 173 V + ++ A Q + P + N+G++ S NP GEA Sbjct: 551 VVDKVVKSAVAKGYDMSDIQVLAP-MYKGNAGIKRLNQVLQSILNPKQQDDREIEFGEAV 609 Query: 174 F-----VVEIVEYLLRSGVPPEDIGVITP--YNGQVELIRNILNSRCSLKPVE------- 219 F V+++V + DIG+I + + L +++L + Sbjct: 610 FRKGDKVLQLVNRPNDNIFN-GDIGIIVGIFWAKENALNKDVLVVDFEGNEITFTKQDLM 668 Query: 220 ------VSTVDSFQGREKDIIILSLVR 240 +++ QG E I+I+ +VR Sbjct: 669 ELTHAYCTSIHKSQGSEFPIVIMPIVR 695 >tr:Q8CP04_STAEP Deoxyribonuclease. Staphylococcus epidermidis. Length = 810 Score = 37.9 bits (87), Expect = 0.015 Identities = 46/267 (17%), Positives = 92/267 (34%), Gaps = 48/267 (17%) Query: 17 KSLALEKFKFDVVIIDEAAQA-----LEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKA 71 + + + ++IIDE + + +PL + + + VGD QLP + Sbjct: 434 QDILENEINARLIIIDEMSMVDTWLFHQFLSAVPL---EAQIVFVGDEDQLPSVGPGQVF 490 Query: 72 AAKAGLE---ESLFERLVELGVSVVRLNVQYRM----HPEICRLPSNLFYEGNGLVDIS- 123 E + +++ +RM +I + + + G I Sbjct: 491 KDLIDSEIIPRVNLTEVYRQQDGSSIIDLAHRMKLNEPIDITKRYHDRSFIRCGTNQIPD 550 Query: 124 SVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNP----------GEAE 173 V + ++ A Q + P + N+G++ S NP GEA Sbjct: 551 VVDKVVKSAVAKGYDMSDIQVLAP-MYKGNAGIKRLNQVLQSILNPKQQDDREIEFGEAV 609 Query: 174 F-----VVEIVEYLLRSGVPPEDIGVITP--YNGQVELIRNILNSRCSLKPVE------- 219 F V+++V + DIG+I + + L +++L + Sbjct: 610 FRKGDKVLQLVNRPNDNIFN-GDIGIIVGIFWAKENALNKDVLVVDFEGNEITFTKQDLM 668 Query: 220 ------VSTVDSFQGREKDIIILSLVR 240 +++ QG E I+I+ +VR Sbjct: 669 ELTHAYCTSIHKSQGSEFPIVIMPIVR 695 >tr:Q6MDD6_PARUW Putative exodeoxyribonuclease V. Parachlamydia sp. (strain UWE25) (subsp. Acanthamoeba sp.). Length = 721 Score = 37.9 bits (87), Expect = 0.016 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%) Query: 27 DVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQLPPT 65 D++IIDEA+ L L L + I VGD QLP Sbjct: 419 DLIIIDEASMIDTFLMYSLLKALPDHT-RVIFVGDIHQLPSV 459 >tr:Q8NPP6_CORGL Superfamily I DNA and RNA helicases (EC 3.6.1.-). Corynebacterium glutamicum (Brevibacterium flavum). Length = 785 Score = 37.9 bits (87), Expect = 0.016 Identities = 30/148 (20%), Positives = 37/148 (25%), Gaps = 16/148 (10%) Query: 12 AASKRKSLALEKFKFDVVIIDEAAQALEAE---CLIPLLLAKKKFILVGDHKQLPPTIKS 68 L +IIDE E L LVGD Q Sbjct: 176 CYLLLDKLIEPHASPKYLIIDEVQDNSVFEFVFALRFAAKHNTSLYLVGDSSQ----TLY 231 Query: 69 KKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARR 128 + +A SL RL YR + EI + L DI + Sbjct: 232 EFRSANPKALNSLE---ASGVFGTYRLTTNYRSNQEILDFANIH------LSDIEANQFA 282 Query: 129 LEYDSANPGFFPTPQFIVPLSFVDNSGV 156 AN PT +D V Sbjct: 283 GIQLYANSFDAPTADSFKEKVELDMHHV 310 >tr:Q9ZJ69_HELPJ Putative ATP-DEPENDENT HELICASE. Helicobacter pylori J99 (Campylobacter pylori J99). Length = 946 Score = 37.9 bits (87), Expect = 0.016 Identities = 30/161 (18%), Positives = 50/161 (31%), Gaps = 25/161 (15%) Query: 51 KKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPS 110 + VGD KQ A G SLFE V L +R P I + Sbjct: 382 RSVFFVGDVKQ--------SIYAFRGSFSSLFES-VSKDFYHDNLEFNHRSAPLIINYVN 432 Query: 111 NLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG 170 +F + + +Y + T ++ D + Sbjct: 433 TIF--KKAYQNSPTAYLEQKYPKTSNNKHVTEGYVKVSLVADEKELLL------------ 478 Query: 171 EAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNS 211 E +++ + LL + P+DI ++ N I+N L Sbjct: 479 --EQILQEAQNLLEHRIDPKDITILCATNKDALEIKNYLQE 517 >tr:Q87644_SINDV P270 nonstructural polyprotein. Sindbis virus. Length = 2513 Score = 37.9 bits (87), Expect = 0.017 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 27 DVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 +V+ +DEA A LI ++ +KK +L GD Q Sbjct: 787 EVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQ 823 >tr:Q5ZW46_LEGPH Conjugal transfer protein TraA. Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152). Length = 889 Score = 37.9 bits (87), Expect = 0.017 Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 22/101 (21%) Query: 12 AASKRKSLALEKFKFD--VVIIDEAAQ---------ALEAECLIPLLLAKKKFILVGDHK 60 + S R + + + D V+IIDEA EA A K +L+GD Sbjct: 413 SLSYRLANDMMQLS-DKHVLIIDEAGMVDFSSMGYLIKEAH------KAGSKVVLIGDPD 465 Query: 61 QLPPT----IKSKKAAAKAGLEESLFERLVELGVSVVRLNV 97 QL P I AA +E +R +LG LN+ Sbjct: 466 QLKPIQKGEIFRGIAARTGYIELENIKRQQDLGDRQASLNL 506 >tr:Q87B09_XYLFT Exodeoxyribonuclease V alpha chain. Xylella fastidiosa (strain Temecula1 / ATCC 700964). Length = 639 Score = 37.9 bits (87), Expect = 0.017 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 26 FDVVIIDEAAQALEAEC--LIPLLLAKKKFILVGDHKQLPPT 65 +DV+++DEA+ L+ + + IL+GD QLP Sbjct: 272 YDVIVVDEASMMDLPLMCKLVDAVADGTQLILLGDPDQLPSV 313 >tr:Q9PG77_XYLFA Exodeoxyribonuclease V alpha chain. Xylella fastidiosa. Length = 639 Score = 37.9 bits (87), Expect = 0.017 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 26 FDVVIIDEAAQALEAEC--LIPLLLAKKKFILVGDHKQLPPT 65 +DV+++DEA+ L+ + + IL+GD QLP Sbjct: 272 YDVIVVDEASMMDLPLMCKLVDAVADGTQLILLGDPDQLPSV 313 >tr:Q5NF53_FRATT Exodeoxyribonuclease V beta chain (EC 3.1.11.5). Francisella tularensis (subsp. tularensis). Length = 1217 Score = 37.9 bits (87), Expect = 0.017 Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 18/171 (10%) Query: 53 FILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 +++GD KQ + L+ ++ +R E+ + + L Sbjct: 405 LLMIGDPKQ--AIYGFRGGDIFTYLKAKDSCPEENQW----SMDTNWRSTGEMIKAYNRL 458 Query: 113 FY--------EGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY 164 FY EG +I S + A+P + +F + E E Sbjct: 459 FYKQDYQPEEEGQIGTNIFSDGIGYQLVKASPDADKKTK-DFDDNFKPINYFYYEVAEDD 517 Query: 165 SYQNPGEAEF---VVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSR 212 + + V EI L V DI ++ Q ++I+ L ++ Sbjct: 518 NKSDIDTNLSLWTVNEITRLLNTQKVAENDIAILVENGKQAKIIQQALQAK 568 >tr:Q7V0Z1_PROMP Possible UvrD/REP helicase subunit B (EC 3.1.11.5). Prochlorococcus marinus subsp. pastoris (strain CCMP 1378 / MED4). Length = 1209 Score = 37.9 bits (87), Expect = 0.017 Identities = 41/198 (20%), Positives = 71/198 (35%), Gaps = 27/198 (13%) Query: 17 KSLALEKFKFDVVIIDEAAQALEAECLIPLLLA---KKKFIL-VGDHKQLPPTIKSKKAA 72 KSL+ + +F V++DE Q + + F+L VGD KQ K + Sbjct: 394 KSLSEIQNRFKCVLVDE-FQDTDNIQWSIIKKFFYTNNHFLLCVGDPKQ--AIYKFRGGD 450 Query: 73 AKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYD 132 + LE + V L +R ++ + +NL+ + S + Sbjct: 451 IETYLEA------KSDAIEVFSLTNNFRSSNKLLDVINNLY---KNGLRESKLEYNNLNS 501 Query: 133 SANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSG-VPPED 191 N F F V+ S E + + + IV +LL + + Sbjct: 502 KLNKSFNHKFDFKNVFEIVEFSSKEVDIEDLVTKY----------IVSFLLNNNEIDINK 551 Query: 192 IGVITPYNGQVELIRNIL 209 I ++T YN Q ++N L Sbjct: 552 ISILTLYNSQCLELKNKL 569 >tr:Q60AW1_METCA Conserved domain protein. Methylococcus capsulatus. Length = 574 Score = 37.9 bits (87), Expect = 0.018 Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 26/141 (18%) Query: 140 PTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITP-- 197 VP+S D G E + A+ IV+++ R GV DI V+ Sbjct: 422 YKHYKGVPVSPPDIEGDEVQFEASPRRDAQA-AKINARIVDFVARQGVSAGDITVLIADA 480 Query: 198 ------YNGQVEL--------IRNILNSRCSLKPVEVSTVDSFQGREKDIII------LS 237 Y L + + + + V + T+ F+G E I+I + Sbjct: 481 LRKADYYAALRRLPLPKPATWLEEGIRANNT---VLIDTIQRFKGLESPIVILWGLDTID 537 Query: 238 LVRSNRNGEIGFLRDERRLNV 258 L RS +G R + L V Sbjct: 538 LTRSEELLYVGMSRAKSLLIV 558 >tr:Q8JMP6_SFV Non-structural polyprotein. Semliki forest virus (SFV). Length = 2431 Score = 37.5 bits (86), Expect = 0.019 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQ 61 D++ +DEA LI L+ + K +L G+ KQ Sbjct: 784 DILYVDEAFACHSGTLLALIALVKPRSKVVLCGNPKQ 820 >tr:Q66CE5_YERPS Putative DNA helicase IV (EC 3.6.1.-). Yersinia pseudotuberculosis. Length = 684 Score = 37.5 bits (86), Expect = 0.019 Identities = 36/234 (15%), Positives = 69/234 (29%), Gaps = 58/234 (24%) Query: 17 KSLALEKFKF----DVVIIDEAAQALE--AECLIPLLLAKKK--FILVGDHKQLPPTIKS 68 LEK +F V++DE A L L K+ VGD Sbjct: 418 AVNLLEKGRFVSPWKHVLVDEFQDISPQRAMLLAALRKQNKQTCLFAVGD--------DW 469 Query: 69 KKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVA 126 + +G E SL E + L+ YR + I + + Sbjct: 470 QAIYRFSGAELSLTTAFSEHFGEGAECALDTTYRFNDRIGDIANRFI------------Q 517 Query: 127 RRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSG 186 + + D E +++ + ++ G Sbjct: 518 QNPYQLKKPLNSLSKGNKKSVMILPDEQL-----------------EALLDKLSGFVKDG 560 Query: 187 VPPEDIGVITPYNGQVELIR-NILNSRCSLKP-VEVS--TVDSFQGREKDIIIL 236 E I ++ Y +R +L + P + + T+ + +G++ D +I+ Sbjct: 561 ---ERILILARY----HHLRPEVLQKAATRWPKLTIDFMTIHASKGQQADYVII 607 >tr:Q5Y389_9VIRU NsP1234 polyprotein. Getah virus. Length = 2467 Score = 37.5 bits (86), Expect = 0.019 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQ 61 + + +DEA LI L+ K +L GD KQ Sbjct: 781 ENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQ 817 >tr:Q9JGL0_9VIRU Polyprotein. Sagiyama virus. Length = 2467 Score = 37.5 bits (86), Expect = 0.019 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQ 61 + + +DEA LI L+ K +L GD KQ Sbjct: 781 ENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQ 817 >tr:Q9JGK9_9VIRU Polyprotein. Sagiyama virus. Length = 1849 Score = 37.5 bits (86), Expect = 0.019 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 27 DVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQ 61 + + +DEA LI L+ K +L GD KQ Sbjct: 781 ENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQ 817 >tr:Q6ZE92_SYNY3 Exodeoxyribonuclease V alpha chain. Synechocystis sp. (strain PCC 6803). Length = 622 Score = 37.5 bits (86), Expect = 0.019 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 14/73 (19%) Query: 7 MTCTGAASKRKSLALEKFK------------FDVVIIDEAAQA--LEAECLIPLLLAKKK 52 MT A + + L + FD VI+DE++ A L+ + + Sbjct: 392 MTGLEAKTLHRLLEFDPNSMGFKRNEDNPLPFDAVIVDESSMLDLFLAHSLLKAISPNTQ 451 Query: 53 FILVGDHKQLPPT 65 +LVGD QLP Sbjct: 452 LLLVGDIDQLPSV 464 >tr:Q8D058_YERPE DNA helicase IV. Yersinia pestis. Length = 684 Score = 37.5 bits (86), Expect = 0.020 Identities = 36/234 (15%), Positives = 69/234 (29%), Gaps = 58/234 (24%) Query: 17 KSLALEKFKF----DVVIIDEAAQALE--AECLIPLLLAKKK--FILVGDHKQLPPTIKS 68 LEK +F V++DE A L L K+ VGD Sbjct: 418 AVNLLEKGRFVSPWKHVLVDEFQDISPQRAMLLAALRKQNKQTCLFAVGD--------DW 469 Query: 69 KKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVA 126 + +G E SL E + L+ YR + I + + Sbjct: 470 QAIYRFSGAELSLTTAFSEHFGEGAECALDTTYRFNDRIGDIANRFI------------Q 517 Query: 127 RRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSG 186 + + D E +++ + ++ G Sbjct: 518 QNPYQLKKPLNSLSKGNKKSVMILPDEQL-----------------EALLDKLSGFVKDG 560 Query: 187 VPPEDIGVITPYNGQVELIR-NILNSRCSLKP-VEVS--TVDSFQGREKDIIIL 236 E I ++ Y +R +L + P + + T+ + +G++ D +I+ Sbjct: 561 ---ERILILARY----HHLRPEVLQKAATRWPKLTIDFMTIHASKGQQADYVII 607 >tr:Q7M9J2_WOLSU ATP-DEPENDENT DNA HELICASE EC 3.6.1. (EC 3.6.1.-). Wolinella succinogenes. Length = 681 Score = 37.5 bits (86), Expect = 0.020 Identities = 36/174 (20%), Positives = 52/174 (29%), Gaps = 36/174 (20%) Query: 25 KFDVVIIDEAAQALEAECLIPLLLAKK---KFILVGDHKQLPPTIKSKKAAAKAGLEESL 81 K+ +++DE Q L + +VGD Q + A + L Sbjct: 207 KYQYIMVDE-YQDTNELQYKLLKKLCQTHNNLCVVGDDDQ--SIYGWRG----ANINHIL 259 Query: 82 FERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPT 141 G VVRL YR I ++L G Sbjct: 260 DFPDHFAGAKVVRLEENYRSTAPILEAANSLIEFNKG----------------------- 296 Query: 142 PQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 + + G E S EA+ V + + LL SGV P DI V+ Sbjct: 297 ---RLGKTLKSVKGAGEAIEILESLDEGEEAQKVAKRIRTLLDSGVSPSDIAVL 347 >tr:Q6A852_PROAC Putative DNA helicase II homolog (EC 3.6.1.-). Propionibacterium acnes. Length = 706 Score = 37.5 bits (86), Expect = 0.021 Identities = 40/212 (18%), Positives = 63/212 (29%), Gaps = 27/212 (12%) Query: 3 KVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEA-ECLIPLLLAKKKFI-LVGDHK 60 ++ R + ++ ++DE L+ L + + +VGD Sbjct: 209 DILLCAVGLLVQHRDITEEIRARYRHFVVDEYQDVSPLQHRLLELWFGDRNDVCVVGDPH 268 Query: 61 QLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 Q I S A L L G + L YR PEI +L + + Sbjct: 269 Q---AIHSYAGARADYL---LDFVADHPGAKRIDLVRNYRSTPEIVQLANEV-------- 314 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + P V L SG E + EA V +E Sbjct: 315 ---------LVNRMTPEEALEHGRGVTLVSRGRSGPEPIYQALGD--DASEASAVAMWIE 363 Query: 181 YLLRSGVPPEDIGVITPYNGQVELIRNILNSR 212 +G+P +I V+ N Q + L R Sbjct: 364 SRHAAGIPWSEIAVLYRINSQAAQLETALAER 395 >tr:Q99QQ1_SHIFL ORF182 (Orf, hypothetical). Shigella flexneri. Length = 970 Score = 37.5 bits (86), Expect = 0.021 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 8/105 (7%) Query: 11 GAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPL--LLAKKKFILVGDHKQLPPTIKS 68 + L+L ++DV+ +DE + + L L +F+L GD Q+ Sbjct: 321 SNLLSHQYLSLATPRYDVIFVDEVQDMTPVQLQLVLKTLRHPGQFLLCGDANQIVHPSFF 380 Query: 69 KKAAAKAGLEESLFERLVELGVSVV-RLNVQYRMHPEICRLPSNL 112 ++ K SLF R + + V L YR + L + L Sbjct: 381 SWSSLK-----SLFFRQQQGNDTTVNILQANYRNGHHVTALANRL 420 >tr:Q73SI2_MYCPA RecD. Mycobacterium paratuberculosis. Length = 574 Score = 37.5 bits (86), Expect = 0.021 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 9/130 (6%) Query: 27 DVVIIDEAAQA--LEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 D++++DE + L + + ILVGD QL + A A L + L R Sbjct: 265 DIIVVDETSMVSLTMMARLAEAVRPDTRLILVGDPDQLASV---EAGAVLADLVDGLAGR 321 Query: 85 LVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQF 144 GV V L +R I L + G+ + +A E+ P + Sbjct: 322 ---AGVRVAALATPHRFGSAIGALAA-AIRAGDADRVLELLAAGGEHIEWVDSERPADRL 377 Query: 145 IVPLSFVDNS 154 L Sbjct: 378 REVLVSHALR 387 >tr:Q8VSB7_SHIFL Hypothetical protein. Shigella flexneri. Length = 970 Score = 37.5 bits (86), Expect = 0.021 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 8/105 (7%) Query: 11 GAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPL--LLAKKKFILVGDHKQLPPTIKS 68 + L+L ++DV+ +DE + + L L +F+L GD Q+ Sbjct: 321 SNLLSHQYLSLATPRYDVIFVDEVQDMTPVQLQLVLKTLRHPGQFLLCGDANQIVHPSFF 380 Query: 69 KKAAAKAGLEESLFERLVELGVSVV-RLNVQYRMHPEICRLPSNL 112 ++ K SLF R + + V L YR + L + L Sbjct: 381 SWSSLK-----SLFFRQQQGNDTTVNILQANYRNGHHVTALANRL 420 >tr:Q67K47_SYMTH Putative ATP-dependent DNA helicase. Symbiobacterium thermophilum. Length = 649 Score = 37.5 bits (86), Expect = 0.022 Identities = 42/204 (20%), Positives = 63/204 (30%), Gaps = 30/204 (14%) Query: 18 SLALEKFKFDVVIIDEAAQA--LEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKA 75 L + ++ V DEA + L+ + L L F+ VGD Q + Sbjct: 207 LLERLRQRWTYVFEDEAQDSYRLQEQVLRLLAGPGGNFVRVGDPNQ-------AIMGSFT 259 Query: 76 GLEESLFERLVEL-GVSVVRLNVQYRMHPEICRLPSNLF------YEGNGLVDISSVARR 128 E +LF + GV V L + R EI L + L Y G D Sbjct: 260 TAEPALFRAFIREPGVDVRPLTMAGRSSQEIIDLANELVRWTCQDYPEPGCRDALEPQYI 319 Query: 129 LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVP 188 P P+ L + EE + A V P Sbjct: 320 QRVPRGMGQSNPEPEGRRVLVRDFPAYEEEMDRI---------AGLAARSVRL-----YP 365 Query: 189 PEDIGVITPYNGQVELIRNILNSR 212 +GV+ P + V+ + +L R Sbjct: 366 EATVGVLLPTHAMVDRMLALLRDR 389 >tr:Q5FT38_GLUOX Bacteriophage-type DNA helicase. Gluconobacter oxydans (Gluconobacter suboxydans). Length = 440 Score = 37.5 bits (86), Expect = 0.023 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 28 VVIIDEAAQAL-EAECLIPLLLAKKKFILVGDHKQLPPT 65 +VI+DE + E I LL + VGD QLPP Sbjct: 110 IVIVDECSMLSAELMNWIRDLLRYCFVLFVGDPAQLPPV 148 >tr:Q9PH94_XYLFA DNA helicase II. Xylella fastidiosa. Length = 728 Score = 37.5 bits (86), Expect = 0.024 Identities = 36/190 (18%), Positives = 54/190 (28%), Gaps = 36/190 (18%) Query: 25 KFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAA-AKAGLEESL 81 +F ++IDE A++ + L I VGD Q + A Sbjct: 214 RFREILIDEFQDTNAIQYAFVRILANETGHVIAVGDDDQ--AIYGWRGAKVEHVQHFLKD 271 Query: 82 FERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPT 141 F V +RL YR I + + Sbjct: 272 FP-----NVQTIRLEQNYRSSANILDAANAIIAHNPD----------------------- 303 Query: 142 PQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQ 201 + SGV E +Y EA ++VE +R G +I V+ N Q Sbjct: 304 ---RIGKRLWTESGVGESIDLYAAYNEIDEARYIVERACQWVRDGGSYGEIAVLYRSNAQ 360 Query: 202 VELIRNILNS 211 +L S Sbjct: 361 SRAFEEVLQS 370 >tr:Q7P628_FUSNV DNA helicase II (EC 3.6.1.-). Fusobacterium nucleatum subsp. vincentii ATCC 49256. Length = 919 Score = 37.5 bits (86), Expect = 0.024 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 6/96 (6%) Query: 18 SLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKA 75 L FD +++DE + + + L+ + KK +VGD Q + A A Sbjct: 223 FLEKINNYFDYIMVDEYQDSNKIQEKILLSISKNKKNICVVGDEDQ----SIYRFRGASA 278 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSN 111 + + ++ LN YR I + Sbjct: 279 ENILNFSKHFTNNECKLIVLNENYRSVNHIVEFNNR 314 >tr:Q5SJL0_THET8 ATP-dependent DNA helicase. Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579). Length = 857 Score = 37.5 bits (86), Expect = 0.024 Identities = 45/233 (19%), Positives = 75/233 (32%), Gaps = 30/233 (12%) Query: 25 KFDVVIIDEAAQALEAEC---LIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESL 81 +F V++DE Q L A + + VGD KQ + Sbjct: 199 RFPHVLVDE-YQDTSPLQGRFFRALEEAGARVVAVGDPKQ--------SIYLFRNARLEV 249 Query: 82 FERLVELGVSVVRLNVQYRMHPEICRLPSN---LFYEGNGLVDISSVARRLEYDSAN-PG 137 F + V+ L+ R + + LF EG + + + G Sbjct: 250 FREALGRAEEVLVLDETRRHARRVAAFLNRFVALFPEGERVAVRPTREAEGRVEVHWVEG 309 Query: 138 FFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGE-AEFVVEIVEY-LLRSGVPPEDIGVI 195 + + + + + EGY++ GE A V LL GV Sbjct: 310 GAGLEERRRFEADLLARRLLALKAEGYAF---GEMAVLVRSRASLPLLERAFRAR--GV- 363 Query: 196 TPY---NGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNG 245 PY GQ N L R + ++ ++ G E+ +L+ +RS G Sbjct: 364 -PYVLRRGQSFF--NRLEVRDLYHALRLALLEGPPGPEERRSLLAFLRSPFVG 413 >tr:Q930Q8_RHIME Probable methylamine. Rhizobium meliloti (Sinorhizobium meliloti). Length = 697 Score = 37.1 bits (85), Expect = 0.025 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 10/76 (13%) Query: 178 IVEYLLRSGVPPEDIGVITPYNGQVE------LIRNILNSRCSLKPVEVSTVDSFQGREK 231 + E L R G + +TP QV L + + R VE+ T + GR K Sbjct: 539 LAELLARRG---RTVTFVTP-ESQVSPWSRNTLEQARIQKRLIGLGVEIVTAMALAGRTK 594 Query: 232 DIIILSLVRSNRNGEI 247 D + LS V S R+ + Sbjct: 595 DQLELSCVYSGRSRPV 610 >tr:Q72JY0_THET2 Probable ATP-dependent DNA helicase. Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039). Length = 857 Score = 37.1 bits (85), Expect = 0.025 Identities = 45/233 (19%), Positives = 75/233 (32%), Gaps = 30/233 (12%) Query: 25 KFDVVIIDEAAQALEAEC---LIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESL 81 +F V++DE Q L A + + VGD KQ + Sbjct: 199 RFPHVLVDE-YQDTSPLQGRFFRALEEAGARVVAVGDPKQ--------SIYLFRNARLEV 249 Query: 82 FERLVELGVSVVRLNVQYRMHPEICRLPSN---LFYEGNGLVDISSVARRLEYDSAN-PG 137 F + V+ L+ R + + LF EG + + + G Sbjct: 250 FREALGRAEEVLVLDETRRHARRVAAFLNRFVALFPEGERVAVRPTREAEGRVEVHWVEG 309 Query: 138 FFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGE-AEFVVEIVEY-LLRSGVPPEDIGVI 195 + + + + + EGY++ GE A V LL GV Sbjct: 310 GAGLEERRRFEADLLARRLLALKAEGYAF---GEMAVLVRSRASLPLLERAFRAR--GV- 363 Query: 196 TPY---NGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRSNRNG 245 PY GQ N L R + ++ ++ G E+ +L+ +RS G Sbjct: 364 -PYVLRRGQSFF--NRLEVRDLYHALRLALLEGPPGPEERRSLLAFLRSPFVG 413 >tr:Q74F46_GEOSL Helicase, putative. Geobacter sulfurreducens. Length = 907 Score = 37.1 bits (85), Expect = 0.028 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Query: 26 FDVVIIDEAAQALEAECLIPLLLAKKK-FILVGDHKQ 61 +D++IIDE + A+ + L K +LVGD Q Sbjct: 579 YDLLIIDECSTVSNADLIKVLEKTSFKLLVLVGDVYQ 615 >tr:Q6AFN0_LEIXX ATP-dependent DNA helicase II. Leifsonia xyli (subsp. xyli). Length = 570 Score = 37.1 bits (85), Expect = 0.028 Identities = 46/208 (22%), Positives = 65/208 (31%), Gaps = 36/208 (17%) Query: 14 SKRKSLALEKFKFDVVIIDEAAQALEA-ECLIPLLLAKKK-FILVGDHKQLPPTIKSKKA 71 S + + F ++DE L+ L L +K +VGD Q A Sbjct: 207 SVAMQVREQYRFF---VVDEYQDVSPLQHQLLRLWLGPRKDLCVVGDASQ----TIYSFA 259 Query: 72 AAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEY 131 A++ F R + G +VVRL YR P + R +NL Sbjct: 260 GARSDYLL-DFGREHQ-GATVVRLEQNYRSTPAVIRTANNLMRG---------------- 301 Query: 132 DSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPED 191 A P V P + EA VVE + L +G PE Sbjct: 302 -RAGALTLHAVAEPRPGDDVP--------PSAEFEDDRAEARAVVEAIAAELAAGARPEG 352 Query: 192 IGVITPYNGQVELIRNILNSRCSLKPVE 219 I ++ N Q + L R V Sbjct: 353 IAILYRVNVQSAALEQALGDRGISYTVR 380 >tr:Q6LR56_PHOPR Putative ATP-dependent exoDNAse (Exonuclease V), alpha subunit. Photobacterium profundum (Photobacterium sp. (strain SS9)). Length = 723 Score = 37.1 bits (85), Expect = 0.028 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Query: 28 VVIIDEAAQALEAECLIPLLLAKK--KFILVGDHKQL 62 VVIIDEA+ +L +FILVGD QL Sbjct: 422 VVIIDEASMVDLPTMFQIVLHCSPDVRFILVGDDNQL 458 >tr:Q92BK4_LISIN Lin1544 protein. Listeria innocua. Length = 798 Score = 37.1 bits (85), Expect = 0.029 Identities = 48/275 (17%), Positives = 81/275 (29%), Gaps = 74/275 (26%) Query: 24 FKFDVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 ++I+DE + L + L + +LVGD QLP G + Sbjct: 450 IDGRLLIVDEMSMVDIWLANQLFRALPAH-MQVVLVGDQDQLPSV----------GPGQV 498 Query: 81 LFERLVELGVSVVRLNVQYR---------MHPEI------CRLPSNL------------- 112 L + L V L+ YR M I N Sbjct: 499 LKDILQSEQFPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFAKNSADRSFFHCTVNQI 558 Query: 113 --------------------------FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIV 146 Y G +DI + + ++ + G QF Sbjct: 559 GDVVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGE 618 Query: 147 PLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIR 206 V + ++ + N G+ +V I+ + +D+ V+ +V R Sbjct: 619 IKYRVHDKVLQLINQPEKNVFN-GDIGEIVSII--YAKENTEKQDLIVVQFDQTEVSYYR 675 Query: 207 NILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRS 241 N L ++ QG E I+I+ +VRS Sbjct: 676 QEFN---QLTHAYCCSIHKAQGSEFPIVIMPIVRS 707 >tr:Q74I48_LACJO ATP-dependent DNA helicase PcrA. Lactobacillus johnsonii. Length = 748 Score = 36.7 bits (84), Expect = 0.032 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 10/98 (10%) Query: 23 KFKFDVVIIDEAAQALEA---ECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEE 79 + KF +++DE EA C+ L K +VGD Q + A + L Sbjct: 212 QNKFRYILVDEYQDTNEAQYQLCV-ALAAQYKNICVVGDADQ--SIYGWRGANMENILN- 267 Query: 80 SLFER-LVELGVSVVRLNVQYRMHPEICRLPSNLFYEG 116 FE + V+ ++L YR I +++ Sbjct: 268 --FEHDYQDDEVTTIKLEQNYRSTGHILDAANSVIKNN 303 >tr:Q6NIE2_CORDI ATP-dependent DNA helicase (EC 3.6.1.-). Corynebacterium diphtheriae. Length = 805 Score = 36.7 bits (84), Expect = 0.033 Identities = 35/202 (17%), Positives = 58/202 (28%), Gaps = 39/202 (19%) Query: 23 KFKFDVVIIDE------AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAG 76 + +F V+IDE A AL E + A + + VGD Q Sbjct: 233 RRRFRHVLIDEYQDTNHAQYALIHELVGSGPDASELCV-VGDSDQ-SIYAFRGATIRNIE 290 Query: 77 LEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANP 136 E + + L YR I +++ + RR + Sbjct: 291 EFERDYP-----NAETILLEQNYRSTQTILNAANSVIAQNEN--------RREKKLWTAL 337 Query: 137 GFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVIT 196 G + +V ++ EA F+ V+ L GV DI V+ Sbjct: 338 GS-----GDPIVGYVADN-------------EHDEARFIANEVDALADKGVAYSDIAVMY 379 Query: 197 PYNGQVELIRNILNSRCSLKPV 218 N + ++ V Sbjct: 380 RTNNSSRAVEDVFMRTGIPYKV 401 >tr:Q5HXH6_GLUOX Conjugal transfer protein, TraA. Gluconobacter oxydans (Gluconobacter suboxydans). Length = 1028 Score = 36.7 bits (84), Expect = 0.033 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 10/73 (13%) Query: 25 KFDVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESL 81 + DV+++DEA L A K +LVGD +QL +A G ++ Sbjct: 428 RGDVLVVDEAGMVGSRQMERVLSVAREAGAKVVLVGDPEQL-------QAIEAGGAFRAV 480 Query: 82 FERLVELGVSVVR 94 ER+ + ++ VR Sbjct: 481 AERVGSVEITTVR 493 >tr:Q8ZG72_YERPE Putative helicase IV (EC 3.6.1.-). Yersinia pestis. Length = 661 Score = 36.7 bits (84), Expect = 0.033 Identities = 36/234 (15%), Positives = 69/234 (29%), Gaps = 58/234 (24%) Query: 17 KSLALEKFKF----DVVIIDEAAQALE--AECLIPLLLAKKK--FILVGDHKQLPPTIKS 68 LEK +F V++DE A L L K+ VGD Sbjct: 395 AVNLLEKGRFVSPWKHVLVDEFQDISPQRAMLLAALRKQNKQTCLFAVGD--------DW 446 Query: 69 KKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVA 126 + +G E SL E + L+ YR + I + + Sbjct: 447 QAIYRFSGAELSLTTAFSEHFGEGAECALDTTYRFNDRIGDIANRFI------------Q 494 Query: 127 RRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSG 186 + + D E +++ + ++ G Sbjct: 495 QNPYQLKKPLNSLSKGNKKSVMILPDEQL-----------------EALLDKLSGFVKDG 537 Query: 187 VPPEDIGVITPYNGQVELIR-NILNSRCSLKP-VEVS--TVDSFQGREKDIIIL 236 E I ++ Y +R +L + P + + T+ + +G++ D +I+ Sbjct: 538 ---ERILILARY----HHLRPEVLQKAATRWPKLTIDFMTIHASKGQQADYVII 584 >tr:Q88429_SINDV Nonstructural polyprotein. Sindbis-like virus. Length = 1901 Score = 36.7 bits (84), Expect = 0.034 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 27 DVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 +V+ +DEA A LI ++ + K +L GD KQ Sbjct: 787 EVLYVDEAFACHAGALLALIAIVRPRHKVVLCGDPKQ 823 >tr:Q6Y9B2_BORHE Exodeoxynuclease V beta chain (Exodeoxyribonuclease V). Borrelia hermsii. Length = 1146 Score = 36.7 bits (84), Expect = 0.034 Identities = 30/205 (14%), Positives = 77/205 (37%), Gaps = 11/205 (5%) Query: 13 ASKRKSLALEKFKFDVVIIDEAAQA--LEAECLIPLLLAKKKFILVGDHKQLPPTIKSKK 70 + + L K ++ +++IDEA ++ E L K + + D KQ I + + Sbjct: 343 SRDNRLLNSIKNRYKIILIDEAQDLDLIQIEIFELLSSCGIKLVFIADPKQ---IIYTFR 399 Query: 71 AAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLE 130 A + +++ +++ + + L YR + ++ + +F + + Sbjct: 400 NADISFYNQNIKDKI--KDDARITLLTNYRSNKKLIEPLNIMFDNIYNKARTDEIEQIKF 457 Query: 131 YDSANPGFFPTPQFIVPLSFV-DNSGVEEEEPEGYSYQNPGEAEFVV---EIVEYLLRSG 186 S + V + + +E EE + + ++++ +I + Sbjct: 458 TKSKTDPKNDENKIFVNGQEIEAINIIETEEDKNVLQKTALTIKYLLTNGKIYDNNKLRQ 517 Query: 187 VPPEDIGVITPYNGQVELIRNILNS 211 + DI V+ + +V+ I L + Sbjct: 518 IKESDIKVLCRTSKEVDFIDRELKN 542 >tr:Q7MTC3_PORGI Helicase, putative. Porphyromonas gingivalis (Bacteroides gingivalis). Length = 761 Score = 36.7 bits (84), Expect = 0.034 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 17/101 (16%) Query: 16 RKSLALEKFKFDVVIIDEAAQALEAECL--IPLLL----------AKKKFILVGDHKQLP 63 S +++IIDE + L A+ L I +L + + +GD QLP Sbjct: 100 HASKRKLLRNMELLIIDEVS-MLRADTLDLIDFVLRRVRSNPRSFGGVQVLFIGDLMQLP 158 Query: 64 PTIKSKKAAAKAGLEESLFER--LVELGVSVVRLNVQ--YR 100 P +K + + + + +F +V V L ++ YR Sbjct: 159 PVVKPHEWELMSAIYQGVFFFHSMVIRQHPPVFLELETIYR 199 >tr:Q9ZCJ7_RICPR ATP-DEPENDENT NUCLEASE SUBUNIT A (AddA). Rickettsia prowazekii. Length = 822 Score = 36.7 bits (84), Expect = 0.035 Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 23/119 (19%) Query: 9 CTGAASKRKSLALEKFKFDVVIIDEA-----AQALEAECLIP-LLLAKK----KFILVGD 58 T K + + + ++IDEA Q LI L +A+K FI VGD Sbjct: 331 TTHEWLFHKF----ENEINHILIDEAQDTSPTQWNIITTLITKLNVAEKPSNSTFI-VGD 385 Query: 59 HKQLPPTIKSKKAAAKAGLEESLFERLVEL-----GVSVVRLNVQYRMHPEICRLPSNL 112 KQ +I + A + + L + L YR PEI + N+ Sbjct: 386 DKQ---SIFRFQGANLHNFNLVNDQLKINLTSNNKKFKNITLEYSYRSCPEILQFTHNV 441 >tr:Q7CXZ3_AGRT5 AGR_C_3725p. Agrobacterium tumefaciens (strain C58 / ATCC 33970). Length = 827 Score = 36.7 bits (84), Expect = 0.036 Identities = 34/204 (16%), Positives = 56/204 (27%), Gaps = 41/204 (20%) Query: 16 RKSLALEKF-KFDVVIIDE-----AAQALEAECLIPLLLAK---KKFILVGDHKQLPPTI 66 + E KF +++DE AQ + L AK + VGD Q Sbjct: 255 HTDILKEYHQKFRYILVDEYQDTNTAQYMWLRLLA--QRAKDEPQNVCCVGDDDQ--SIY 310 Query: 67 KSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVA 126 + A + G V++L YR I +L G Sbjct: 311 GWRGAEVDN--ILRFDKDFP--GAKVIKLERNYRSTEHILGAAGHLIAHNEG-------- 358 Query: 127 RRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSG 186 G + P ++ + EA V E +E L R Sbjct: 359 --------RLGKTLFTERSSPDDEKVVVHA--------AWDSEEEARAVGEEIEQLQRKN 402 Query: 187 VPPEDIGVITPYNGQVELIRNILN 210 D+ ++ + Q+ + Sbjct: 403 YKLNDMAILVRASFQMREFEDRFV 426 >tr:Q8UDR4_AGRT5 DNA helicase II. Agrobacterium tumefaciens (strain C58 / ATCC 33970). Length = 824 Score = 36.7 bits (84), Expect = 0.036 Identities = 34/204 (16%), Positives = 56/204 (27%), Gaps = 41/204 (20%) Query: 16 RKSLALEKF-KFDVVIIDE-----AAQALEAECLIPLLLAK---KKFILVGDHKQLPPTI 66 + E KF +++DE AQ + L AK + VGD Q Sbjct: 252 HTDILKEYHQKFRYILVDEYQDTNTAQYMWLRLLA--QRAKDEPQNVCCVGDDDQ--SIY 307 Query: 67 KSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVA 126 + A + G V++L YR I +L G Sbjct: 308 GWRGAEVDN--ILRFDKDFP--GAKVIKLERNYRSTEHILGAAGHLIAHNEG-------- 355 Query: 127 RRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSG 186 G + P ++ + EA V E +E L R Sbjct: 356 --------RLGKTLFTERSSPDDEKVVVHA--------AWDSEEEARAVGEEIEQLQRKN 399 Query: 187 VPPEDIGVITPYNGQVELIRNILN 210 D+ ++ + Q+ + Sbjct: 400 YKLNDMAILVRASFQMREFEDRFV 423 >tr:Q6N434_RHOPA DNA helicase II (EC 3.6.1.-). Rhodopseudomonas palustris. Length = 848 Score = 36.7 bits (84), Expect = 0.037 Identities = 20/122 (16%), Positives = 35/122 (28%), Gaps = 26/122 (21%) Query: 89 GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPL 148 G V+RL YR I S+L G G + + Sbjct: 351 GAKVIRLERNYRSTGHILAAASHLIAHNEG----------------RLGKTLRTEDVDGE 394 Query: 149 SFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNI 208 ++ + EA + E +E L R G +I ++ + Q+ + Sbjct: 395 MVTVT----------GAWDSEEEARAIGEEIEQLQRQGHALNEIAILVRASFQMREFEDR 444 Query: 209 LN 210 Sbjct: 445 FV 446 >tr:Q55FJ4_DICDI Hypothetical protein. Dictyostelium discoideum (Slime mold). Length = 933 Score = 36.7 bits (84), Expect = 0.037 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 16/101 (15%) Query: 11 GAASKRKSLALEKFKFDVVIIDEAAQALEA-----ECLIPLLLAKK------KFILVGDH 59 A K V+IIDE + A E + ++ K + +L GD Sbjct: 592 SAILKNTQSKTRWQTTKVLIIDEVSMISAALLDKLEAIAKIVKNSKERFGGIQVLLCGDF 651 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYR 100 QLPP K+ K + F + + +V ++Q R Sbjct: 652 CQLPPVSKASKDDPTSK-----FCFMAQCWDGLVDRSIQLR 687 >tr:Q83GZ1_TROWT Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) (EC 3.5.4.10). Tropheryma whipplei (strain Twist) (Whipple's bacillus). Length = 542 Score = 36.7 bits (84), Expect = 0.039 Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 31/187 (16%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIID-----EAAQALEAE--------------CLI 44 + T + + L FD+V+++ E ++ EAE + Sbjct: 78 PILADTTSQMHRAQLQQLGVDAFDLVVVNLYPFFEISKNSEAEFSDVIEQIDIGGSALIR 137 Query: 45 PLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPE 104 + +++ D I S + A + L +L + +Y +H Sbjct: 138 AAAKNHTRVVVIVDPSDYIHVINSLERGAPSRLR-------HQLAIKAYSHTSEYDLH-- 188 Query: 105 ICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY 164 I R S FY+ SV + + + F + D E + Sbjct: 189 ISRWLSERFYKHTLYSSSDSVGDVCDNNLDSNDHFVE---LRGKKLGDLRYGENSHQKAS 245 Query: 165 SYQNPGE 171 Y + E Sbjct: 246 LYLSCKE 252 >tr:Q83ID0_TROW8 Bifunctional purine biosynthesis protein PurH (EC 2.1.2.3). Tropheryma whipplei (strain TW08/27) (Whipple's bacillus). Length = 542 Score = 36.7 bits (84), Expect = 0.039 Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 31/187 (16%) Query: 4 VVAMTCTGAASKRKSLALEKFKFDVVIID-----EAAQALEAE--------------CLI 44 + T + + L FD+V+++ E ++ EAE + Sbjct: 78 PILADTTSQMHRAQLQQLGVDAFDLVVVNLYPFFEISKNSEAEFSDVIEQIDIGGSALIR 137 Query: 45 PLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPE 104 + +++ D I S + A + L +L + +Y +H Sbjct: 138 AAAKNHTRVVVIVDPSDYIHVINSLERGAPSRLR-------HQLAIKAYSHTSEYDLH-- 188 Query: 105 ICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGY 164 I R S FY+ SV + + + F + D E + Sbjct: 189 ISRWLSERFYKHTLYSSSDSVGDVCDNNLDSNDHFVE---LRGKKLGDLRYGENSHQKAS 245 Query: 165 SYQNPGE 171 Y + E Sbjct: 246 LYLSCKE 252 >tr:Q6FZ97_BARQU Hypothetical protein. Bartonella quintana (Rochalimaea quintana). Length = 373 Score = 36.7 bits (84), Expect = 0.040 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 3/81 (3%) Query: 28 VVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKA-GLEESLFERLV 86 ++I+DE + E L+ + +++GD QLPP + A S R Sbjct: 115 LIIVDECSMVDEQLA-RDLMSFRTPILVLGDPGQLPPISGGSFFSNSAPDFLLSEIHRQA 173 Query: 87 ELGVSVVRLNVQYRMHPEICR 107 +VRL + R I Sbjct: 174 R-DNPIVRLAMDVREGRSIAY 193 >tr:Q9DJR1_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 36.3 bits (83), Expect = 0.041 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ + L S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-------HYIHRNDLGVS 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + L R+ V YR +IC S + Sbjct: 120 LLHDIDALYEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q5F609_NEIG1 Putative DNA helicase II. Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090). Length = 735 Score = 36.3 bits (83), Expect = 0.045 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 34/189 (17%) Query: 23 KFKFDVVIIDEAAQALEAE-CLIPLLLAKKKFIL-VGDHKQLPPTIKSKKAAAKAGLEES 80 + +F+ +++DE + + + L+ + VGD Q + A G + Sbjct: 214 QNRFNHILVDEFQDTNKLQYAWLKLMAGGNAAVFAVGDDDQ----SIYRFRGANVGNMTA 269 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 L E + V+L YR I + + + + + L D+ Sbjct: 270 LMEEFHI--DAPVKLEQNYRSVGNILAAANAVI-----ENNDERLGKNLRTDAEAGDKIR 322 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 ++ + EA F+V+ + L R G ++I V+ N Sbjct: 323 YY---------------------SAFTDLEEARFIVDETKALEREGWDLDEIAVLYRSNA 361 Query: 201 QVELIRNIL 209 Q +I L Sbjct: 362 QSRVIEQSL 370 >tr:Q8G3N4_BIFLO Possible helicase. Bifidobacterium longum. Length = 472 Score = 36.3 bits (83), Expect = 0.045 Identities = 30/134 (22%), Positives = 43/134 (32%), Gaps = 40/134 (29%) Query: 4 VVAMTCTGAASKRKSLALEKFKF---DVVIIDEAAQALEAECLI--------------PL 46 V T A+ + + K K D+++IDE + P Sbjct: 68 VGVATALSASLLKLIKSRRKRKIQATDILVIDE---VSMLHAWLFDMVDQVCREVRRDPR 124 Query: 47 LLAKKKFILVGDHKQLPPTIKSKKAAA----------------KAGLEESLF--ERLV-- 86 + +L GD QLPP S + +AGL F E LV Sbjct: 125 PFGGIQVVLSGDFFQLPPVSVSGRNRDLIAPTPEFIASRERYARAGLNPEGFITESLVWP 184 Query: 87 ELGVSVVRLNVQYR 100 EL + L Q+R Sbjct: 185 ELNPVICYLTEQHR 198 >tr:Q9ALM0_9PSEU Probable exodeoxyribonuclease V. Saccharopolyspora spinosa. Length = 751 Score = 36.3 bits (83), Expect = 0.046 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Query: 27 DVVIIDEAAQA--LEAECLIPLLLAKKKFILVGDHKQLPPT 65 D+V++DEA+ L A L + +LVGD QLP Sbjct: 436 DLVVVDEASMLDLLLANKLAKAIAPGAHLLLVGDVDQLPSV 476 >tr:Q87F91_XYLFT DNA helicase II. Xylella fastidiosa (strain Temecula1 / ATCC 700964). Length = 728 Score = 36.3 bits (83), Expect = 0.046 Identities = 35/190 (18%), Positives = 53/190 (27%), Gaps = 36/190 (18%) Query: 25 KFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAA-AKAGLEESL 81 +F ++IDE A++ + L VGD Q + A Sbjct: 214 RFREILIDEFQDTNAIQYAFVRVLANDTGHIFAVGDDDQ--AIYGWRGAKVEHVQHFLKD 271 Query: 82 FERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPT 141 F V +RL YR I + + Sbjct: 272 FP-----NVQTIRLEQNYRSSANILDAANAIIAHNPD----------------------- 303 Query: 142 PQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQ 201 + SGV E +Y EA ++VE +R G +I V+ N Q Sbjct: 304 ---RIGKRLWTESGVGESIDLYAAYNEIDEARYIVERARQWVRDGGSYGEIAVLYRSNAQ 360 Query: 202 VELIRNILNS 211 +L S Sbjct: 361 SRAFEEVLQS 370 >tr:Q6MFB5_PARUW Putative exodeoxyribonuclease V alpha chain recD. Parachlamydia sp. (strain UWE25) (subsp. Acanthamoeba sp.). Length = 622 Score = 36.3 bits (83), Expect = 0.046 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%) Query: 27 DVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLE 78 D++I+DE++ + A L + IL+GD QLP A L+ Sbjct: 309 DLIIVDESSMIDVKMMAYLFEALKKG-SRLILLGDQHQLPSVEAGSLFADLTKLK 362 >tr:Q8NG08_HUMAN Helicase B. Homo sapiens (Human). Length = 1087 Score = 36.3 bits (83), Expect = 0.046 Identities = 31/150 (20%), Positives = 47/150 (31%), Gaps = 23/150 (15%) Query: 27 DVVIIDEAAQALEAECLIPLLLAK-----KKFILVGDHKQLPPTIKSKKAAAKAGLEESL 81 V+++DE + L L K I++GD +QLP L + L Sbjct: 585 RVLVVDEGSLVSVGIFKSVLNLLCEHSKLSKLIILGDIRQLPSI-------EPGNLLKDL 637 Query: 82 FERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPT 141 FE L + L +R ++ + IS N PT Sbjct: 638 FETLKSRN-CAIELKTNHRAESQLI---------VDNATRISRRQFPKFDAELNISDNPT 687 Query: 142 -PQFIVPLSFVDNSGVEEEEPEGYSYQNPG 170 P I +F+ EE+ S N Sbjct: 688 LPISIQDKTFIFVRLPEEDASSQSSKTNHH 717 >tr:Q898W6_CLOTE Exodeoxyribonuclease V alpha chain (EC 3.1.11.5). Clostridium tetani. Length = 743 Score = 36.3 bits (83), Expect = 0.046 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Query: 27 DVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQLPPT 65 DVVIIDEA+ L L + + + I+VGD QLP Sbjct: 414 DVVIIDEASMIDIMLMNNLLKAISIGT-RLIIVGDVDQLPSV 454 >tr:Q6D8H8_ERWCT Exodeoxyribonuclease V alpha chain (EC 3.1.11.5). Erwinia carotovora (subsp. atroseptica) (Pectobacterium atrosepticum). Length = 620 Score = 36.3 bits (83), Expect = 0.046 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 22 EKFKFDVVIIDEAAQALEA--ECLIPLLLAKKKFILVGDHKQLPPT 65 DV+I+DEA+ +I L A+ + I +GD QL Sbjct: 264 NPLHLDVLIVDEASMVDLPMMANVIAALPAQARIIFLGDRDQLASV 309 >tr:Q6AD55_LEIXX ATP-dependent DNA helicase II. Leifsonia xyli (subsp. xyli). Length = 833 Score = 36.3 bits (83), Expect = 0.047 Identities = 30/155 (19%), Positives = 40/155 (25%), Gaps = 32/155 (20%) Query: 55 LVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFY 114 +VGD Q E F G VV L YR I + + Sbjct: 314 VVGDSDQ-SIYAFRGADIRNIVEFERDFP-----GAKVVLLEQNYRSTQNILSAANAVIA 367 Query: 115 EGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEF 174 D G E+ Y EA+F Sbjct: 368 NNFDRKDKK--------------------------LWTAVGDGEKIVGYTGYSGHDEAQF 401 Query: 175 VVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNIL 209 V + +E L G+ +DI V N Q + I Sbjct: 402 VADEIEKLHSDGMDYKDIAVFYRTNAQTRALEEIF 436 >tr:Q9FCK0_STRCO Putative ATP-dependent DNA helicase. Streptomyces coelicolor. Length = 785 Score = 36.3 bits (83), Expect = 0.049 Identities = 38/165 (23%), Positives = 54/165 (32%), Gaps = 29/165 (17%) Query: 55 LVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFY 114 +VGD Q TI S A L L R G +VV+L YR P++ L + Sbjct: 311 VVGDASQ---TIYSFTGATPDHL---LDFRGRHPGATVVKLVRDYRSTPQVVHLAN---- 360 Query: 115 EGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEF 174 + + R ++ P P E + P EAE Sbjct: 361 ----GLLAQARGRAADHRLELVSQ--RPAGPEP--------GYAEYSDE-----PAEAEG 401 Query: 175 VVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVE 219 + L+ SGVP +I V+ N Q E L + Sbjct: 402 AARRIRELIDSGVPAAEIAVLFRTNSQSETYEQALADAGVPYQLR 446 >tr:Q75A11_ASHGO ADR113Wp. Ashbya gossypii (Yeast) (Eremothecium gossypii). Length = 708 Score = 36.3 bits (83), Expect = 0.050 Identities = 40/185 (21%), Positives = 61/185 (32%), Gaps = 32/185 (17%) Query: 24 FKFDVVIIDEAAQALEAECLIPLLL--AKKKFILVGDHKQ-LPPTIKSKKAAAKAGLEES 80 + V+I+DE Q L L L AKK+ IL GD Q + + S K K Sbjct: 210 NDYKVIIVDEV-QDLYPLLFPMLELIAAKKQLILFGDEHQSIYGFLGSNKLFMKQISSMR 268 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 E++ L +R PEI L ++ ++ Sbjct: 269 PAEKMF-----TYELYDNFRSTPEIIDLAQSVMGRKMPPANLDQYGLHK----------K 313 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 I P+SF +EE +I L+ S DI ++T N Sbjct: 314 LQCGIKPISFTLEDPLEEL------------CFLTDQIC-QLVCSSAKLSDIAILTRTNE 360 Query: 201 QVELI 205 ++ I Sbjct: 361 HMDRI 365 >tr:Q9A2L9_CAUCR Helicase, UvrD/Rep family. Caulobacter crescentus. Length = 1203 Score = 36.3 bits (83), Expect = 0.051 Identities = 29/114 (25%), Positives = 38/114 (33%), Gaps = 33/114 (28%) Query: 26 FDVVIIDEAAQALEAE---CLIPL---------------LLAKKKFILVGDHKQLPPTIK 67 D +++DEA Q E L L A++ +VGD KQ +I Sbjct: 442 IDHILLDEA-QDTAPEQWEILRALTADFFVGETSEGWSGRRAERTLFVVGDEKQ---SIY 497 Query: 68 SKKAAAKAGLEESLFERL--------VELGVSVVRLNVQYRMHPEICRLPSNLF 113 S + A L L E V V L V YR E+ LF Sbjct: 498 SFQGADPTRL---LEETQGYISRIEAVGAVGKGVPLTVSYRSTHEVLSFVDALF 548 >tr:Q92K51_RHIME Hypothetical protein SMc01414. Rhizobium meliloti (Sinorhizobium meliloti). Length = 410 Score = 36.3 bits (83), Expect = 0.051 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 28 VVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTI-KSKKAAAKAGLEESLFERLV 86 ++I+DE + EA L+ +++GD QLPP + + R Sbjct: 150 LIIVDECSMVDEALG-KDLMSFGTPILVLGDPGQLPPVSGGGYFTNHEPDFLLTDIHRQA 208 Query: 87 ELGVSVVRLNVQYRMHPEICR 107 +++L +Q R EI Sbjct: 209 R-DNPIIQLAMQVREGKEIMH 228 >tr:Q9RTI9_DEIRA DNA helicase II. Deinococcus radiodurans. Length = 745 Score = 36.3 bits (83), Expect = 0.051 Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 23/179 (12%) Query: 39 EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQ 98 E L+ + ++VGD Q K + A + L + V L Sbjct: 238 ELTRLLASR--DRNLLVVGDPDQ--SIYKFRGADIQN----ILDFQKDYPDAKVYMLEHN 289 Query: 99 YRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEE 158 YR + + L N + + ++ F +V + Sbjct: 290 YRSSARVLEAANKLI--ENNTERLDKTLKPVKEAGQPVTFHRATDHRAEGDYVADWLT-R 346 Query: 159 EEPEGYSY-------QNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILN 210 EG ++ + ++ + E L R +P +G + Y+ IR+IL Sbjct: 347 LHGEGRAWSEMAILYRTNAQSRVIEE---SLRRVQIPARIVGGVGFYD--RREIRDILA 400 >tr:Q667G8_YERPS Exodeoxyribonuclease V alpha chain (EC 3.1.11.5). Yersinia pseudotuberculosis. Length = 652 Score = 36.0 bits (82), Expect = 0.063 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 22 EKFKFDVVIIDEAAQALEA--ECLIPLLLAKKKFILVGDHKQLPPT 65 DV+++DEA+ LI L AK K I +GD QL Sbjct: 278 NPLNLDVLVVDEASMVDLPMMARLIAALPAKAKVIFLGDRDQLASV 323 >tr:Q8ZH87_YERPE Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) (DNA helicase, ATP- dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease). Yersinia pestis. Length = 652 Score = 36.0 bits (82), Expect = 0.063 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 22 EKFKFDVVIIDEAAQALEA--ECLIPLLLAKKKFILVGDHKQLPPT 65 DV+++DEA+ LI L AK K I +GD QL Sbjct: 278 NPLNLDVLVVDEASMVDLPMMARLIAALPAKAKVIFLGDRDQLASV 323 >tr:Q9PL06_CHLMU Exodeoxyribonuclease V, alpha subunit. Chlamydia muridarum. Length = 744 Score = 36.0 bits (82), Expect = 0.064 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 2/41 (4%) Query: 27 DVVIIDEAAQALEAECLIPLLLAKKK--FILVGDHKQLPPT 65 D+VIIDE+ L IL+GD QLP Sbjct: 426 DLVIIDESGMIDTILLQRFLAALPDHAILILIGDVHQLPSV 466 >tr:Q87GP9_VIBPA Putative ATP-dependent exoDNAse (Exonuclease V), alpha subunit. Vibrio parahaemolyticus. Length = 675 Score = 36.0 bits (82), Expect = 0.064 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%) Query: 28 VVIIDEAAQALEAECLIPLLL--AKKKFILVGDHKQLPPT 65 +++IDEA+ + + I GD QLPP Sbjct: 431 LLVIDEASMIDLPTMYRLVNHIHPSVRLIFTGDPDQLPPI 470 >tr:Q9A836_CAUCR DNA helicase II. Caulobacter crescentus. Length = 805 Score = 36.0 bits (82), Expect = 0.064 Identities = 32/194 (16%), Positives = 56/194 (28%), Gaps = 34/194 (17%) Query: 19 LALEKFKFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAG 76 L + +F V++DE + L L ++ VGD Q + A Sbjct: 243 LDEFQQRFKYVMVDEYQDTNVAQYLWLRLLAQGRQNVCCVGDDDQ--SIYGWRGAEVDNI 300 Query: 77 LEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANP 136 L FER G VVRL YR I S Sbjct: 301 LR---FER-DFPGAKVVRLECNYRSTEHILAAAS-------------------------- 330 Query: 137 GFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVIT 196 G + + + S E+ + E+ + + +E ++G + ++ Sbjct: 331 GLITANKGRLGKTLWTPSKGGEKVKVSGVWDGEAESRLIADEIERAKKAGRKYSQMAILV 390 Query: 197 PYNGQVELIRNILN 210 + Q+ Sbjct: 391 RASFQMRAFEERFV 404 >tr:Q8P380_XANCP Exodeoxyribonuclease V alpha chain. Xanthomonas campestris (pv. campestris). Length = 745 Score = 36.0 bits (82), Expect = 0.065 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 26 FDVVIIDEAAQALEAEC--LIPLLLAKKKFILVGDHKQLPPT 65 FD++++DEA+ L+ + + IL+GD QLP Sbjct: 311 FDLIVVDEASMVDLPLMCKLVEAVADGTQLILLGDADQLPSV 352 >tr:Q98B51_RHILO Conjugal transfer protein; TraA. Rhizobium loti (Mesorhizobium loti). Length = 1015 Score = 36.0 bits (82), Expect = 0.066 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Query: 27 DVVIIDEAAQALEAECLIPLLLA---KKKFILVGDHKQL 62 DV++IDEA + L A K +LVGD +QL Sbjct: 440 DVLVIDEAGMVGTRQLERVLSHAADVGAKVVLVGDPQQL 478 >tr:Q5M2P0_STRT2 Exodeoxyribonuclease V. Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311). Length = 834 Score = 36.0 bits (82), Expect = 0.066 Identities = 32/182 (17%), Positives = 54/182 (29%), Gaps = 50/182 (27%) Query: 27 DVVIIDEAAQALEAECLIPLLLAKK-----KFILVGDHKQLPPTIKSKKAAAKAGLEESL 81 D++IIDE + + + L + + I+VGD QLP G + L Sbjct: 430 DLIIIDEFSMV---DTWLANQLFESISDTTQVIIVGDQDQLPSV----------GPGQVL 476 Query: 82 FERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPT 141 + L + V L +R Sbjct: 477 ADLLQIDDLPKVSLTKIFR-------------------------QSEDSTIVTLASQIRQ 511 Query: 142 PQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITP-YNG 200 Q + E + Q V +IV ++SG+ +D+ ++ P Y G Sbjct: 512 GQLPTDFTEKKADRSYFEANANHIPQ------MVPKIVSAAIKSGIAAQDVQILAPMYRG 565 Query: 201 QV 202 Q Sbjct: 566 QA 567 >tr:Q9K1D0_NEIMB DNA helicase II. Neisseria meningitidis (serogroup B). Length = 735 Score = 36.0 bits (82), Expect = 0.068 Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 34/189 (17%) Query: 23 KFKFDVVIIDEAAQALEAE-CLIPLLLAKKKFIL-VGDHKQLPPTIKSKKAAAKAGLEES 80 + +F+ +++DE + + + L+ + VGD Q +I + A+ + + Sbjct: 214 QNRFNHILVDEFQDTNKLQYAWLKLIAGNHAAVFAVGDDDQ---SIYRFRGASVGNM-TA 269 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 L E + V+L YR I + + + + + L D+ Sbjct: 270 LMEEFHI--DAPVKLEQNYRSVGNILAAANAVI-----ENNDERLGKNLRTDAEAGDKIR 322 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 ++ + EA F+++ + L R G ++I V+ N Sbjct: 323 YY---------------------SAFTDLEEARFILDETKALEREGWDLDEIAVLYRSNA 361 Query: 201 QVELIRNIL 209 Q +I L Sbjct: 362 QSRVIEQSL 370 >tr:Q5LY35_STRT1 Exodeoxyribonuclease V. Streptococcus thermophilus (strain CNRZ 1066). Length = 834 Score = 36.0 bits (82), Expect = 0.069 Identities = 32/182 (17%), Positives = 54/182 (29%), Gaps = 50/182 (27%) Query: 27 DVVIIDEAAQALEAECLIPLLLAKK-----KFILVGDHKQLPPTIKSKKAAAKAGLEESL 81 D++IIDE + + + L + + I+VGD QLP G + L Sbjct: 430 DLIIIDEFSMV---DTWLANQLFESISDTTQVIIVGDQDQLPSV----------GPGQVL 476 Query: 82 FERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPT 141 + L + V L +R Sbjct: 477 ADLLQIDDLPKVSLTKIFR-------------------------QSEDSTIVTLASQIRQ 511 Query: 142 PQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITP-YNG 200 Q + E + Q V +IV ++SG+ +D+ ++ P Y G Sbjct: 512 GQLPTDFTEKKADRSYFEANANHIPQ------MVPKIVSAAIKSGIAAQDVQILAPMYRG 565 Query: 201 QV 202 Q Sbjct: 566 QA 567 >tr:Q5WVN9_LEGPL Hypothetical protein. Legionella pneumophila (strain Lens). Length = 1076 Score = 36.0 bits (82), Expect = 0.070 Identities = 41/210 (19%), Positives = 64/210 (30%), Gaps = 50/210 (23%) Query: 22 EKFKFDVVIIDE--AAQALEAECLIPLLLA-----KKKFILVGDHKQLPPTIKSKKAAAK 74 +++DE + E LI L+ K LVGD Q Sbjct: 402 LDHSIHHLLVDEFQDTSITQFELLIKLVQGWVPGEGKTLFLVGDPMQ--------SIYRF 453 Query: 75 AGLEESLFERLVELGVSVVRLNV-----QYRMHPEICRLPSNLFYEGNGLVDISSVARRL 129 E LF + E G+ VRL +R I ++ F S + + Sbjct: 454 RQAEVGLFFQAKEHGIGPVRLKSLELRCNFRSTETIVNWVNDHF---------SKIFSQQ 504 Query: 130 EYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS------YQNPG-EAEFVVEIVEYL 182 + F V E S ++N EA ++EI+ Sbjct: 505 VDIESGAVSFHP-------------SVHVIEKNESSTIQAMQFKNREQEARHLIEIINNE 551 Query: 183 LRSGVPPEDIGVITPYNGQVELIRNILNSR 212 L S P + I V+ Q+ I ++L Sbjct: 552 LNSN-PEQTIAVLVRTRSQLPEIISLLRQN 580 >tr:Q7UPR6_RHOBA ATP-dependent DNA helicase. Rhodopirellula baltica. Length = 671 Score = 35.6 bits (81), Expect = 0.072 Identities = 37/191 (19%), Positives = 60/191 (31%), Gaps = 37/191 (19%) Query: 25 KFDVVIIDEAAQALEAECLIP---LLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESL 81 K+D V++DE Q L + +VGD Q S A A + L Sbjct: 222 KYDHVLVDE-YQDTNGSQYRITKHLTEVHRNLCVVGDDDQ------SIYAWRGADVSHIL 274 Query: 82 FERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPT 141 VV L YR I + + L ++++ Sbjct: 275 SFSKDWPDAEVVWLEDNYRSTGAILEMANTLI----------------DFNTVRHDKVLK 318 Query: 142 PQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSG-VPPEDIGVITPYNG 200 P +E+ EAE VV +++L+ + + P+DI ++ N Sbjct: 319 PFRPSGKRPRIVQHKDEQ----------AEAETVVREIKHLIENEHIQPKDIAILFRTNE 368 Query: 201 QVELIRNILNS 211 Q L L Sbjct: 369 QPRLFETELRK 379 >tr:Q9WJD2_9VIRU Nonstructural polyprotein. Venezuelan equine encephalitis virus. Length = 2506 Score = 35.6 bits (81), Expect = 0.075 Identities = 25/133 (18%), Positives = 41/133 (30%), Gaps = 30/133 (22%) Query: 27 DVVIIDEAAQALEAE--CLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 D + +DEA LI ++ KK +L GD KQ F Sbjct: 782 DTLYVDEAFACHTGTLRALIAIVK-PKKTVLCGDPKQCG-----------------FFNM 823 Query: 85 LVELGVSVVRLNVQY-------RMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPG 137 + L Q R P + + S LFY+ ++ R + + G Sbjct: 824 MCLKVHFNHELCTQVFHKSISRRCTPAVTSIVSTLFYDKRM---RTTNTRNTKIEIDTTG 880 Query: 138 FFPTPQFIVPLSF 150 + + L+ Sbjct: 881 STKPKKDDLILTC 893 >tr:O69152_PHOPR Exodeoxyribonuclease V subunit. Photobacterium profundum (Photobacterium sp. (strain SS9)). Length = 701 Score = 35.6 bits (81), Expect = 0.076 Identities = 40/211 (18%), Positives = 72/211 (34%), Gaps = 27/211 (12%) Query: 22 EKFKFDVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQL-----PPTIKSKKAAA 73 DV+++DEA+ + A L L K IL+GD QL + A A Sbjct: 346 NPLHLDVLVVDEASMVDLPMMARLLDALPPH-AKLILLGDRDQLASVEAGAVLGDICAFA 404 Query: 74 KAGLEESLFERLVEL---GVSVVRLNVQYR-----MHPEICRLP-SNLFYEGNGLVDISS 124 + G + L +L VS +RL + +C L S F+ +G+ ++ Sbjct: 405 RQGYSPQQDQILSQLTGFNVSGIRLGTHDDNSVSPIADSLCMLQKSYRFHAESGIGKLAK 464 Query: 125 VARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY-------QNPGEAEFVVE 177 + + + I + + Y ++ E E V++ Sbjct: 465 AINDGKPYDVDRICQHDFKDINHYPLSAENYQKMINLTVTFYRDYLDAIEHKQEPEVVLK 524 Query: 178 IVEYLLRSG-VPPEDIGVITPYNG-QVELIR 206 + + D GV+ + EL+R Sbjct: 525 AFSSVRLLCALREGDFGVVGLNQRIERELVR 555 >tr:Q8PEL4_XANAC Exodeoxyribonuclease V alpha chain. Xanthomonas axonopodis (pv. citri). Length = 685 Score = 35.6 bits (81), Expect = 0.076 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query: 26 FDVVIIDEAAQALEAEC--LIPLLLAKKKFILVGDHKQLPPT 65 FD++++DEA+ L+ + + IL+GD QLP Sbjct: 299 FDLIVVDEASMVDLPLMCKLVDAVADGTQLILLGDADQLPSV 340 >tr:Q7VBK0_PROMA ATP-dependent exoDNAse beta subunit. Prochlorococcus marinus. Length = 1256 Score = 35.6 bits (81), Expect = 0.078 Identities = 42/219 (19%), Positives = 67/219 (30%), Gaps = 38/219 (17%) Query: 13 ASKRKSLALEKFKFDVVIIDEAAQALEAECLI----PLLLAKKKFIL-VGDHKQLPPTIK 67 AS L + K+ VV++DE Q + +K+ F+L VGD KQ K Sbjct: 399 ASSEFLLERLREKYKVVLVDE-FQDTDPVQWRIINQAFSKSKEHFLLMVGDPKQ--SIYK 455 Query: 68 SKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPS---------------NL 112 + L + + L YR P++ + + L Sbjct: 456 FRGGDLTTYLIAR------KKAERIDSLLTNYRSAPKLMKGLNTLLNAGLKYSKLEAPPL 509 Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 + S G PTP S EE N Sbjct: 510 ISASKENILFSKSGTAPIEIIDIKGVTPTPTSFNDDLP---SKALVEENIPVIVTN---- 562 Query: 173 EFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNS 211 ++++++ + P DI V+ + Q E IR L Sbjct: 563 -TILDLLQN-HSDELNPHDICVLVSRHEQAENIRKSLEK 599 >tr:Q6FQB4_CANGA Similar to tr|Q12039 Saccharomyces cerevisiae YOL095c HMI1. Candida glabrata (Yeast) (Torulopsis glabrata). Length = 711 Score = 35.6 bits (81), Expect = 0.079 Identities = 37/218 (16%), Positives = 74/218 (33%), Gaps = 29/218 (13%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAK-KKFILVGDH 59 A + T +++ + ++ V++IDE + ++K K+ I+ GD Sbjct: 188 RASKILTEPTFDSAEFSFIRDLNQRYKVILIDEFQDLYPQLLPLLQTISKNKQLIIFGDV 247 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 Q + A + + E+L L V LN +R PEI + + Sbjct: 248 HQ----SIYEFLGANSTVVEALD-HLHS-NTITVHLNDNFRCSPEIMKAARKVI------ 295 Query: 120 VDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV 179 + VA LE S P+ + S + + ++ + Sbjct: 296 -NKEHVAVELETISDIIVKEPSKVDPIIESIDNVD---------------AQLRYIETEI 339 Query: 180 EYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKP 217 L+ S DI ++T N +++ I + + Sbjct: 340 SKLVCSSAKLSDIAILTRSNAEIDTIIDYFKNSAIPFE 377 >tr:Q8KDI0_CHLTE Exodeoxyribonuclease V, alpha subunit. Chlorobium tepidum. Length = 577 Score = 35.6 bits (81), Expect = 0.079 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Query: 27 DVVIIDEAAQALEAECLIPLLLAK---KKFILVGDHKQLPPT 65 DVVI+DEA+ + L+ A + IL+GD QL Sbjct: 261 DVVIVDEASMVDLP-LMTALVTALPPHARLILIGDRDQLASV 301 >tr:Q5YR07_NOCFA Putative ATP-dependent DNA helicase. Nocardia farcinica. Length = 716 Score = 35.6 bits (81), Expect = 0.080 Identities = 29/165 (17%), Positives = 46/165 (27%), Gaps = 29/165 (17%) Query: 55 LVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFY 114 +VGD Q A R +VVRL YR P++ L + + Sbjct: 256 VVGDANQ----TIYSFTGATPSYLLDFSRRFP--DATVVRLERDYRSTPQVVSLANRVIG 309 Query: 115 EGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEF 174 G + + + + F + + Sbjct: 310 AARGRIAGTRLQLVGQRPDGPEPEFAEYDDAPAEAAAVAAK------------------- 350 Query: 175 VVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVE 219 +E L+ +G PP +I V+ N Q E L R V Sbjct: 351 ----IERLVAAGTPPAEIAVLYRINAQSEAYEQALAERGIPFQVR 391 >tr:Q6LMZ5_PHOPR Putative exodeoxyribonuclease V, 67 kDa subunit. Photobacterium profundum (Photobacterium sp. (strain SS9)). Length = 707 Score = 35.6 bits (81), Expect = 0.080 Identities = 40/211 (18%), Positives = 72/211 (34%), Gaps = 27/211 (12%) Query: 22 EKFKFDVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQL-----PPTIKSKKAAA 73 DV+++DEA+ + A L L K IL+GD QL + A A Sbjct: 352 NPLHLDVLVVDEASMVDLPMMARLLDALPPH-AKLILLGDRDQLASVEAGAVLGDICAFA 410 Query: 74 KAGLEESLFERLVEL---GVSVVRLNVQYR-----MHPEICRLP-SNLFYEGNGLVDISS 124 + G + L +L VS +RL + +C L S F+ +G+ ++ Sbjct: 411 RQGYSPQQDQILSQLTGFNVSGIRLGTHDDNSVSPIADSLCMLQKSYRFHAESGIGKLAK 470 Query: 125 VARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSY-------QNPGEAEFVVE 177 + + + I + + Y ++ E E V++ Sbjct: 471 AINDGKPYDVDRICQHDFKDINHYPLSAENYQKMINLTVTFYRDYLDAIEHKQEPEVVLK 530 Query: 178 IVEYLLRSG-VPPEDIGVITPYNG-QVELIR 206 + + D GV+ + EL+R Sbjct: 531 AFSSVRLLCALREGDFGVVGLNQRIERELVR 561 >tr:Q817Y5_BACCR Exodeoxyribonuclease V alpha chain (EC 3.1.11.5). Bacillus cereus (strain ATCC 14579 / DSM 31). Length = 778 Score = 35.6 bits (81), Expect = 0.080 Identities = 34/179 (18%), Positives = 53/179 (29%), Gaps = 50/179 (27%) Query: 28 VVIIDEAAQALEAECLIPLLLAKK-----KFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 ++IIDE + + + L K + I+VGD QLP G + L Sbjct: 448 LLIIDEFSMV---DIWLANQLFKSLPTNIQVIVVGDEDQLPSV----------GPGQVLK 494 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTP 142 + L V V+L YR + P Sbjct: 495 DLLNAGAVPTVKLTEIYR----------------QAEGSSVIQLAHAIKNGTLPPDLAQN 538 Query: 143 QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITP-YNG 200 + SF+ +G + E V ++ E G D+ V+ P Y G Sbjct: 539 KKDR--SFISCTGAQIV-------------EVVKKVCENAKTKGFSARDVQVLAPMYRG 582 >tr:Q64X75_BACFR Hypothetical protein. Bacteroides fragilis. Length = 388 Score = 35.6 bits (81), Expect = 0.082 Identities = 22/162 (13%), Positives = 46/162 (28%), Gaps = 15/162 (9%) Query: 26 FDVVIIDEAAQAL----EAECLIPLLLAKKKFILVGDHKQLPPTIK-SKKAAAKAGLEES 80 FD + DE + E ++ + +K +L GD +Q + + K G + Sbjct: 160 FDFLYFDECQDFVGYDYEILKIL-FVKSKISCVLAGDPRQHTYSTHATSKYKKYTGDIAA 218 Query: 81 LFERLVELGVSVVRL------NVQYRMHPEICRLPSNLFYEGNGLVDISSV---ARRLEY 131 + +V + +R P IC S + + + + + Sbjct: 219 FIQEIVNGKKKQYVIIDKMSFVKSHRCPPSICNFASTIMPQFPKMESANMRYCQTEHCKL 278 Query: 132 DSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAE 173 +F + + N GE + Sbjct: 279 VRQRDAENYINKFSPIALVWSSVAKNKVHSNISRIYNMGEVK 320 >tr:Q97SG8_STRPN Helicase, putative. Streptococcus pneumoniae. Length = 788 Score = 35.6 bits (81), Expect = 0.083 Identities = 33/193 (17%), Positives = 54/193 (27%), Gaps = 52/193 (26%) Query: 27 DVVIIDEAAQALEAECLIPLLLA-----KKKFILVGDHKQLPPTIKSKKAAAKAGLEESL 81 D +I+DE + + + L K ++VGD QLP + L Sbjct: 432 DFIIVDEFSMV---DTWLANQLFSNISSNSKILIVGDSDQLPSV----------SPGQVL 478 Query: 82 FERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPT 141 + L + RL YR E Sbjct: 479 ADLLHIPLIPQTRLEKIYRQSKESTI-------------------------VTLASQIRQ 513 Query: 142 PQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITP-YNG 200 + E G+ + +I+ LR+G+P DI V+ P Y G Sbjct: 514 GILPADFTQKKADRSYFEIASGHI------PATIEKILGAALRNGIPARDIQVLAPMYRG 567 Query: 201 QV--ELIRNILNS 211 + I ++ Sbjct: 568 TAGIDAINQLMQD 580 >tr:Q5QUT0_IDILO Superfamily I DNA helicase, UvrD. Idiomarina loihiensis. Length = 723 Score = 35.6 bits (81), Expect = 0.084 Identities = 39/193 (20%), Positives = 64/193 (33%), Gaps = 38/193 (19%) Query: 23 KFKFDVVIIDEAAQALEAE-CLIPLLLAKKKFI-LVGDHKQLPPTIKSKKAA-AKAGLEE 79 + +F +++DE + I LL + + +VGD Q + A Sbjct: 210 QNRFRHILVDEFQDTNSIQYAWIRLLAGSQNSVTIVGDDDQ--SIYGWRGAKVENIHQFL 267 Query: 80 SLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFF 139 S FE G +RL YR I R +++ +G RL D G Sbjct: 268 SDFE-----GSETIRLEQNYRSTSTILRAANSVISNNSG---------RLGKDLWTDG-- 311 Query: 140 PTPQFIVPLSFVDNSGVEEEEPEGYSYQN-PGEAEFVVEIVEYLLRSGVPPEDIGVITPY 198 P+S Y+ N EA ++V +E G +D ++ Sbjct: 312 ---NDGEPISL-------------YAGFNEMDEARYIVARIEEWRDQGGSLQDSAILYRS 355 Query: 199 NGQVELIRNILNS 211 N Q ++ L Sbjct: 356 NAQSRILEEALLH 368 >tr:Q9RDI9_STRCO Putative deoxyribonuclease. Streptomyces coelicolor. Length = 753 Score = 35.6 bits (81), Expect = 0.084 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 8/44 (18%) Query: 27 DVVIIDEAAQALEAECLIPLLLAKK-----KFILVGDHKQLPPT 65 D+V++DEA+ + L+ LAK +LVGD QLP Sbjct: 444 DLVVVDEASM---LDLLLANKLAKAVPPGAHLLLVGDVDQLPSV 484 >tr:Q7QZA3_GIALA GLP_567_39852_37534. Giardia lamblia ATCC 50803. Length = 772 Score = 35.6 bits (81), Expect = 0.085 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 13/56 (23%) Query: 28 VVIIDEAA--QALEAECLIPLLLAKK-----------KFILVGDHKQLPPTIKSKK 70 V+IIDE + Q +CL + + + IL GD QLPP ++S Sbjct: 120 VLIIDECSMLQGTYFDCLEYVARHLRGGASKSFFGGLQLILCGDFLQLPPVVRSNN 175 >tr:Q77NC4_9CORO Spike glycoprotein. Bovine coronavirus. Length = 1363 Score = 35.6 bits (81), Expect = 0.086 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF L LNVQYR++ Sbjct: 957 KVLPPLLSVNQISGYTLAATSASLFPPLSAAVGVPFYLNVQYRIN 1001 >tr:Q6HT01_BACAN Helicase, putative. Bacillus anthracis. Length = 778 Score = 35.6 bits (81), Expect = 0.091 Identities = 35/179 (19%), Positives = 53/179 (29%), Gaps = 50/179 (27%) Query: 28 VVIIDEAAQALEAECLIPLLLAKK-----KFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 ++IIDE + + + L K + I+VGD QLP G + L Sbjct: 448 LLIIDEFSMV---DIWLANQLFKSLPTNIQVIVVGDEDQLPSV----------GPGQVLK 494 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTP 142 + L V V+L YR + P Sbjct: 495 DLLNAGAVPTVKLTEIYR----------------QAEGSSVIQLAHAIKNGTLPPDLAQN 538 Query: 143 QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITP-YNG 200 Q SF+ +G + E V ++ E G D+ V+ P Y G Sbjct: 539 QKDR--SFIGCTGAQIV-------------EVVKKVCENAKTKGFSARDVQVLAPMYRG 582 >tr:Q9YMS4_NPVLD Ld-helicase-2. Lymantria dispar multicapsid nuclear polyhedrosis virus (LdMNPV). Length = 460 Score = 35.6 bits (81), Expect = 0.091 Identities = 13/37 (35%), Positives = 16/37 (43%) Query: 52 KFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVEL 88 I+ GD QLPP K+ A + RL EL Sbjct: 171 NVIVFGDLYQLPPVNKTSDAKPVYAADAWNAFRLYEL 207 >tr:Q730D9_BACC1 Helicase, putative. Bacillus cereus (strain ATCC 10987). Length = 778 Score = 35.6 bits (81), Expect = 0.091 Identities = 35/179 (19%), Positives = 53/179 (29%), Gaps = 50/179 (27%) Query: 28 VVIIDEAAQALEAECLIPLLLAKK-----KFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 ++IIDE + + + L K + I+VGD QLP G + L Sbjct: 448 LLIIDEFSMV---DIWLANQLFKSLPTNIQVIVVGDEDQLPSV----------GPGQVLK 494 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTP 142 + L V V+L YR + P Sbjct: 495 DLLNAGAVPTVKLTEIYR----------------QAEGSSVIQLAHAIKNGTLPPDLAQN 538 Query: 143 QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITP-YNG 200 Q SF+ +G + E V ++ E G D+ V+ P Y G Sbjct: 539 QKDR--SFIGCTGAQIV-------------EVVKKVCENAKTKGFSARDVQVLAPMYRG 582 >tr:Q6KHF3_MYCMO ATP-dependent DNA helicase (EC 3.6.1.-). Mycoplasma mobile. Length = 742 Score = 35.2 bits (80), Expect = 0.092 Identities = 37/175 (21%), Positives = 56/175 (32%), Gaps = 36/175 (20%) Query: 24 FKFDVVIIDE----AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEE 79 F ++IDE Q E I + K ++VGD Q TI S K + + Sbjct: 232 QYFSYILIDEFQDLGFQEYEILKKIAM---KTPIMIVGDTNQ---TIFSPKYTDVKYMSK 285 Query: 80 SLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFF 139 V + LN YR + I +NL + N S + +E + Sbjct: 286 ---FHEDFPNVQIFHLNKNYRSNKSIIEAVNNLMKKNN--TSFESSIKEMEAQNLEEEKI 340 Query: 140 PTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGV 194 Q EA +VV + L R+ V +DI + Sbjct: 341 VYQQAFSTD---------------------AEARWVVHKINKLKRNKVQLKDIAI 374 >tr:Q87QR6_VIBPA Putative ATP-dependent DNA helicase. Vibrio parahaemolyticus. Length = 1139 Score = 35.2 bits (80), Expect = 0.094 Identities = 32/176 (18%), Positives = 53/176 (30%), Gaps = 37/176 (21%) Query: 26 FDVVIIDEAAQALEAECLIPLLLAKK--KFILVGDHKQLPPTIKSKKAAAKAGLEESLFE 83 +D V++DE + + +LL + VGD +Q G Sbjct: 421 YDHVLVDEYQDVNRSSIRLLMLLCGEGENLWAVGDARQ--------SIYRFRGASSVSMS 472 Query: 84 RLVELGVSVV---RLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 R RL + YR EI R S + D+S+ E + Sbjct: 473 RYCTQDFPTALQGRLKINYRSSEEIIRAYSKFAF------DMSANIGSPELIADRGETGC 526 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVIT 196 P+F V + +A + E ++ + SG D V+ Sbjct: 527 LPEFKVVE------------------KADDQAVVLAETIKDMQESGYSYRDQAVLC 564 >tr:Q6UN12_PRRSV Replicase polyprotein 1B (Fragment). Porcine reproductive and respiratory syndrome virus (PRRSV). Length = 1458 Score = 35.2 bits (80), Expect = 0.094 Identities = 22/128 (17%), Positives = 38/128 (29%), Gaps = 16/128 (12%) Query: 31 IDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGV 90 +DEA + L LL+K + +GD +QL P + Sbjct: 864 LDEAGYCNHLDILR--LLSKTPLVCLGDLQQLHPVGFDSYCYVFDQM------------- 908 Query: 91 SVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISS-VARRLEYDSANPGFFPTPQFIVPLS 149 +L YR P IC + E ++ V + P + + + Sbjct: 909 PQKQLTTIYRFGPNICAAIQPCYREKLESKARNTRVVFTTRPVAFGQVLTPYHKDRIGSA 968 Query: 150 FVDNSGVE 157 +S Sbjct: 969 ITIDSSQG 976 >tr:Q5YBT6_PRRSL ORF1b polyprotein (Fragment). PRRSV LV4.2.1. Length = 1463 Score = 35.2 bits (80), Expect = 0.094 Identities = 22/128 (17%), Positives = 38/128 (29%), Gaps = 16/128 (12%) Query: 31 IDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGV 90 +DEA + L LL+K + +GD +QL P + Sbjct: 869 LDEAGYCNHLDILR--LLSKTPLVCLGDLQQLHPVGFDSYCYVFDQM------------- 913 Query: 91 SVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISS-VARRLEYDSANPGFFPTPQFIVPLS 149 +L YR P IC + E ++ V + P + + + Sbjct: 914 PQKQLTTIYRFGPNICAAIQPCYREKLESKARNTRVVFTTRPVAFGQVLTPYHKDRIGSA 973 Query: 150 FVDNSGVE 157 +S Sbjct: 974 ITIDSSQG 981 >tr:Q6HDD2_BACHK Exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5). Bacillus thuringiensis (subsp. konkukian). Length = 778 Score = 35.2 bits (80), Expect = 0.095 Identities = 35/179 (19%), Positives = 53/179 (29%), Gaps = 50/179 (27%) Query: 28 VVIIDEAAQALEAECLIPLLLAKK-----KFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 ++IIDE + + + L K + I+VGD QLP G + L Sbjct: 448 LLIIDEFSMV---DIWLANQLFKSLPTNIQVIVVGDEDQLPSV----------GPGQVLK 494 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTP 142 + L V V+L YR + P Sbjct: 495 DLLNAGAVPTVKLTEIYR----------------QAEGSSVIQLAHAIKNGTLPPDLAQN 538 Query: 143 QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITP-YNG 200 Q SF+ +G + E V ++ E G D+ V+ P Y G Sbjct: 539 QKDR--SFIGCTGAQIV-------------EVVKKVCENAKTKGFSARDVQVLAPMYRG 582 >tr:Q81LJ4_BACAN Helicase, putative. Bacillus anthracis. Length = 770 Score = 35.2 bits (80), Expect = 0.096 Identities = 35/179 (19%), Positives = 53/179 (29%), Gaps = 50/179 (27%) Query: 28 VVIIDEAAQALEAECLIPLLLAKK-----KFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 ++IIDE + + + L K + I+VGD QLP G + L Sbjct: 440 LLIIDEFSMV---DIWLANQLFKSLPTNIQVIVVGDEDQLPSV----------GPGQVLK 486 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTP 142 + L V V+L YR + P Sbjct: 487 DLLNAGAVPTVKLTEIYR----------------QAEGSSVIQLAHAIKNGTLPPDLAQN 530 Query: 143 QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITP-YNG 200 Q SF+ +G + E V ++ E G D+ V+ P Y G Sbjct: 531 QKDR--SFIGCTGAQIV-------------EVVKKVCENAKTKGFSARDVQVLAPMYRG 574 >tr:Q634F1_BACCZ Exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5). Bacillus cereus (strain ZK). Length = 778 Score = 35.2 bits (80), Expect = 0.097 Identities = 35/179 (19%), Positives = 53/179 (29%), Gaps = 50/179 (27%) Query: 28 VVIIDEAAQALEAECLIPLLLAKK-----KFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 ++IIDE + + + L K + I+VGD QLP G + L Sbjct: 448 LLIIDEFSMV---DIWLANQLFKSLPTNIQVIVVGDEDQLPSV----------GPGQVLK 494 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTP 142 + L V V+L YR + P Sbjct: 495 DLLNAGAVPTVKLTEIYR----------------QAEGSSVIQLAHAIKNGTLPPDLAQN 538 Query: 143 QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITP-YNG 200 Q SF+ +G + E V ++ E G D+ V+ P Y G Sbjct: 539 QKDR--SFIGCTGAQIV-------------EVVKKVCENAKTKGFSARDVQVLAPMYRG 582 >tr:Q98PM4_MYCPU ATP-DEPENDENT HELICASE PCRA. Mycoplasma pulmonis. Length = 734 Score = 35.2 bits (80), Expect = 0.097 Identities = 29/174 (16%), Positives = 51/174 (29%), Gaps = 36/174 (20%) Query: 25 KFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 K+D V++DE ++ E + L + K +VGD Q + + + L Sbjct: 211 KYDYVLVDEFQDTSFIQYEIVKVLA-SNKNITIVGDPDQ------NIYSWRGSDFRIMLN 263 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTP 142 + YR P I + + L + A+P F Sbjct: 264 FDKDFENTKTINFEQNYRSTPNILEIANKLIKNNKN--RMEKNLFSTSARGADPLFLTKY 321 Query: 143 QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVIT 196 N EA+++VE + L + I + T Sbjct: 322 N------------------------NKLEAKWIVEKIIELSQQT-KYSQIAIFT 350 >tr:Q6MHJ5_BDEBA RRM3/PIF1 helicase homolog precursor. Bdellovibrio bacteriovorus. Length = 439 Score = 35.2 bits (80), Expect = 0.098 Identities = 31/160 (19%), Positives = 46/160 (28%), Gaps = 25/160 (15%) Query: 29 VIIDEAAQALEAECLIP-----------LLLAKKKFILVGDHKQLPPTIKSKKAAAKAGL 77 VIIDE + +I L + I VGD QLPP + Sbjct: 130 VIIDEISMIPGQALMIAEALSQRARESKLPWGGMRVIAVGDFAQLPPVTHT--------- 180 Query: 78 EESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPG 137 + + L + V M R+ NLF + V V R+ Sbjct: 181 GQRDWCFLNGVWEVSGFQTV---MLSHNQRVSDNLFLDVLSDVRHGKVTERVRE--FLNE 235 Query: 138 FFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVE 177 P + + + E+ E E V+E Sbjct: 236 HVQDHDEDDPGTRLFPRKINAEKFNERKLAEIDETEVVIE 275 >tr:Q9CGH6_LACLA ATP-dependent helicase PcrA (EC 3.6.1.-). Lactococcus lactis (subsp. lactis) (Streptococcus lactis). Length = 758 Score = 35.2 bits (80), Expect = 0.099 Identities = 39/192 (20%), Positives = 57/192 (29%), Gaps = 34/192 (17%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLLLAKK--KFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + KF + +DE A+ + LLA + +VGD Q + A ++ Sbjct: 211 QGKFQYIHVDEYQDTNHAQYQLVKLLASRFQNICVVGDADQ--SIYGWRG----ADMQNI 264 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 L VV L YR I +N+ P Sbjct: 265 LDFEKDYPKAKVVLLEENYRSTKTILDAANNVI---------------KNNLKRRPKELW 309 Query: 141 TPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNG 200 T +G E+E EA V EI+ +RSG D V+ N Sbjct: 310 TQNDAGDKIVYFRAGNEQE-----------EANKVSEIITSGIRSGRSYADYAVLYRTNA 358 Query: 201 QVELIRNILNSR 212 Q I + Sbjct: 359 QSRTIEDSFVKS 370 >tr:Q7NQR4_CHRVO Exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5). Chromobacterium violaceum. Length = 565 Score = 35.2 bits (80), Expect = 0.10 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Query: 27 DVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQLPPT 65 DV+++DEA+ L A + L + IL+GD QL Sbjct: 238 DVLVVDEASMIDLSLMARTVAALPSQ-ARLILLGDRDQLSSV 278 >tr:Q88XQ1_LACPL ATP-dependent DNA helicase PcrA (EC 3.6.1.-). Lactobacillus plantarum. Length = 755 Score = 35.2 bits (80), Expect = 0.10 Identities = 36/220 (16%), Positives = 58/220 (26%), Gaps = 51/220 (23%) Query: 23 KFKFDVVIIDE-----AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGL 77 + KF + +DE AQ L K +VGD Q + A + Sbjct: 212 QNKFHYIHVDEYQDTNNAQYTLVNLLAD---KYKNLCVVGDADQ--SIYGWRG----ANM 262 Query: 78 EESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPG 137 E L V L YR I + + + + P Sbjct: 263 ENILDFEKDYPQADTVMLEQNYRSTKTILSAANAVINNNS---------------TRRPK 307 Query: 138 FFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIV-EYLLRSGVPPEDIGVIT 196 T G + G S E FV+ + E + + + D ++ Sbjct: 308 KLWTENEP---------GDKISYYRGQSES--DETHFVIAKIQESMQQDKMDYGDFAILY 356 Query: 197 PYNGQVELIRNILNS----------RCSLKPVEVSTVDSF 226 N Q ++ L E+ V S+ Sbjct: 357 RTNAQSRVMEESLVKANIPYTMVGGNKFYDRKEIRDVLSY 396 >tr:Q6G2T5_BARHE Hypothetical protein. Bartonella henselae (Rochalimaea henselae). Length = 373 Score = 35.2 bits (80), Expect = 0.10 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 28 VVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 ++I+DE + E L+ + +++GD QLPP Sbjct: 115 LIIVDECSMVDEQLA-RDLMSFRTPILVLGDPGQLPPI 151 >tr:Q7QS92_GIALA GLP_449_2218_2694. Giardia lamblia ATCC 50803. Length = 158 Score = 35.2 bits (80), Expect = 0.10 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 21/77 (27%) Query: 191 DIGVITPYNGQVELI-----RNILNSRCSLKP--------------VEVSTVDSFQGREK 231 + +++ Y+ Q + I +L + CS +++ T D +QG E Sbjct: 36 SVALLSLYHSQKQYILSDPVIAVLRNMCSDTTFTTDSDTHLKVRLNLDIETSDGYQGLEA 95 Query: 232 DIIILSLV--RSNRNGE 246 D++ LSL R N Sbjct: 96 DVVFLSLSEPRGNEFRN 112 >tr:O84036_CHLTR Exodeoxyribonuclease V, Alpha. Chlamydia trachomatis. Length = 746 Score = 35.2 bits (80), Expect = 0.11 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%) Query: 27 DVVIIDEAAQALEAECLIPLLLAKKK--FILVGDHKQLPPT 65 D+VI+DE+ L IL+GD QLP Sbjct: 426 DLVIVDESGMIDTILLQRFLAALPDHAILILIGDVHQLPSV 466 >tr:Q88791_WEEV Nonstructural polyprotein (Fragment). Western equine encephalitis virus. Length = 1490 Score = 35.2 bits (80), Expect = 0.11 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%) Query: 31 IDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 IDEA A LI ++ KK +L GD KQ Sbjct: 348 IDEAFACHAGTLLALIAIVK-PKKVVLCGDPKQ 379 >tr:Q89241_WEEV Nonstructural polyprotein (Fragment). Western equine encephalitis virus. Length = 1499 Score = 35.2 bits (80), Expect = 0.11 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%) Query: 31 IDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 IDEA A LI ++ KK +L GD KQ Sbjct: 348 IDEAFACHAGTLLALIAIVK-PKKVVLCGDPKQ 379 >tr:Q9DJN7_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 35.2 bits (80), Expect = 0.11 Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 12/109 (11%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ + L+ S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-------HYIHRNDLDVS 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLFYEGNGLVDISSVAR 127 L + R+ V YR +IC S + + SV + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFYPRHVATANTESVGK 168 >tr:Q7MTA3_PORGI UvrD/REP helicase domain protein. Porphyromonas gingivalis (Bacteroides gingivalis). Length = 1102 Score = 35.2 bits (80), Expect = 0.11 Identities = 38/199 (19%), Positives = 62/199 (31%), Gaps = 38/199 (19%) Query: 46 LLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSV----VRLNVQYRM 101 L K LVGD KQ + L +V + V L +R Sbjct: 418 LAHGKYNL-LVGDAKQ--------SIYRFRNADRRLLTEVVSRDFAETSERVNLPYNWRS 468 Query: 102 HPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFI------------VPLS 149 PEI ++L Y+ + ++ R E + P VP + Sbjct: 469 TPEIIEFNNSL-YKHLPQILCEAMTREAETMAMPDPKLPEEINRTFMQTYADVEQLVPPA 527 Query: 150 FVDNSGVEEEEPEGYSYQNPGEA-----EFVVE----IVEYLLRSGVPPEDIGVIT--PY 198 VD G + EA E +++ + L + G P DI ++ Y Sbjct: 528 KVDRHGSVCIYLPSPASSEEAEANLSWEEQILQDLPRFIIGLQKRGYAPSDIAILVRKTY 587 Query: 199 NGQVELIRNILNSRCSLKP 217 E+ R +L+ + Sbjct: 588 QA-REIARAMLSYQPEPDE 605 >tr:Q9J1K2_WEEV Nonstructural polyprotein. Western equine encephalitis virus. Length = 2467 Score = 35.2 bits (80), Expect = 0.12 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%) Query: 31 IDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 IDEA A LI ++ KK +L GD KQ Sbjct: 784 IDEAFACHAGTLLALIAIVK-PKKVVLCGDPKQ 815 >tr:Q81TW1_BACAN ATP-dependent nuclease, subunit A. Bacillus anthracis. Length = 1241 Score = 35.2 bits (80), Expect = 0.12 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 14/176 (7%) Query: 23 KFKFDVVIIDE--AAQALEAECLIPLLL---AKKKFILVGDHKQLPPTIKSKKAAAKAGL 77 + KF V++DE ++ + + ++ +VGD KQ +I + A GL Sbjct: 402 RNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQ---SIYRFRLAEP-GL 457 Query: 78 EESLFERLVEL---GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 ++R + G + L +R E+ + +F + G Sbjct: 458 FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG--EAEFVVEIVEYLLRSGVP 188 + L + + E + E + EA + + ++ ++ SG Sbjct: 518 GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYE 573 >tr:Q9WJC9_9VIRU Nonstructural polyprotein. Venezuelan equine encephalitis virus. Length = 2501 Score = 35.2 bits (80), Expect = 0.12 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%) Query: 27 DVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 D + IDEA A LI ++ KK +L GD KQ Sbjct: 782 DTLYIDEAFACHAGTLRALIAIIK-PKKAVLCGDPKQ 817 >tr:Q9YJX8_SINDV Nonstructural polyprotein. Sindbis virus. Length = 2487 Score = 35.2 bits (80), Expect = 0.12 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Query: 31 IDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 +DEA A LI ++ +KK +L GD KQ Sbjct: 791 VDEAFACHAGTLLALIAIVRPRKKVVLRGDPKQ 823 >tr:Q5KWU0_GEOKA ATP-dependent exonuclease V. Geobacillus kaustophilus. Length = 786 Score = 35.2 bits (80), Expect = 0.12 Identities = 52/283 (18%), Positives = 87/283 (30%), Gaps = 69/283 (24%) Query: 13 ASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKK-----KFILVGDHKQLPPTIK 67 A E +++IDE + + + L K + I VGD QLP Sbjct: 434 AEGFSRDENEPISGKLLVIDEMSMV---DTWLANQLLKAVPNGMQVIFVGDEDQLPSV-- 488 Query: 68 SKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMH--PEICRLPSNLFYEGNGLVDISSV 125 G + L + L + RL YR I L + + Sbjct: 489 --------GPGQVLKDLLSSGVIPFARLTEVYRQAEGSSIIELAHEMKRGVVPDDLTAPK 540 Query: 126 ARR----------------LEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNP 169 A R + ++ GF ++ + +G+++ NP Sbjct: 541 ADRSFIRCRAGQVVDVVRQIADNARKKGFSVKDIQVLAPMYRGPAGIDQLNKALQELFNP 600 Query: 170 ----------GEAEF-----VVEIVEYLLRSGVPPEDIG-VITPYNGQVELIRNILNSRC 213 GE + V+++V V DIG ++ + E I Sbjct: 601 PAEGKRELSVGEVVYRVGDKVLQLVNQP-EDNVFNGDIGEIVAIFYA-KENIEKQDLLVV 658 Query: 214 SLKPVEVS---------------TVDSFQGREKDIIILSLVRS 241 S +EV+ +V QG E I+IL +V+S Sbjct: 659 SFDGIEVTYTRQDLGQITHAYCCSVHKAQGSEFPIVILPVVKS 701 >tr:Q9DJS0_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 35.2 bits (80), Expect = 0.12 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 12/109 (11%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ + L S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-------HYIHRNDLGVS 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLFYEGNGLVDISSVAR 127 L + R+ V YR +IC S + +I SV + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFYPRHVATANIGSVGK 168 >tr:Q9DJS2_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 35.2 bits (80), Expect = 0.12 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 12/109 (11%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ + L S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-------HYIHRNDLGVS 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLFYEGNGLVDISSVAR 127 L + R+ V YR +IC S + +I SV + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFYPRHVATANIGSVGK 168 >tr:Q7Y474_9CAUD Dda DNA helicase. Enterobacteria phage RB49. Length = 463 Score = 34.8 bits (79), Expect = 0.12 Identities = 34/164 (20%), Positives = 50/164 (30%), Gaps = 19/164 (11%) Query: 27 DVVIIDEAAQA--LEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 ++I+DEA+ + L+ + + I VGD QL P S + S F Sbjct: 113 QIIIVDEASMVDKKLFDILMKSINGRIVIIAVGDLYQLRPVDPSGATSI------SPFFT 166 Query: 85 LVELGVSVVRLNVQYRMHPEICRLP------SNLF--YEGNGLVDISSVARRLEYDSANP 136 + V L R + I + +F GN V SS Sbjct: 167 --DERFQNVELTEIKRSNAPIIDVATAVRNGKWVFEKQCGNEGVFHSSTLPEFMKHYFET 224 Query: 137 GFFPTPQFIVPLSFVDNSGVEEEEPEGYSY-QNPGEAEFVVEIV 179 P + N VE+ N E V EI+ Sbjct: 225 VKTPEDLLENRILAYTNKSVEKLNEIVRKRVYNTDEPVIVDEIL 268 >tr:Q73C23_BACC1 ATP-dependent nuclease, subunit A. Bacillus cereus (strain ATCC 10987). Length = 1241 Score = 34.8 bits (79), Expect = 0.12 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 14/176 (7%) Query: 23 KFKFDVVIIDE--AAQALEAECLIPLLL---AKKKFILVGDHKQLPPTIKSKKAAAKAGL 77 + KF V++DE ++ + + ++ +VGD KQ +I + A GL Sbjct: 402 RNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQ---SIYRFRLAEP-GL 457 Query: 78 EESLFERLVEL---GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 ++R + G + L +R E+ + +F + G Sbjct: 458 FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG--EAEFVVEIVEYLLRSGVP 188 + L + + E + E + EA + + ++ ++ SG Sbjct: 518 GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYE 573 >tr:Q696P8_CVHOC Spike surface glycoprotein. Human coronavirus (strain OC43) (HCoV-OC43). Length = 1353 Score = 34.8 bits (79), Expect = 0.12 Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 15/92 (16%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH-------------PE 104 K LPP + + + A SLF LNVQYR++ Sbjct: 947 KVLPPLLSENQFSGYTLAATSASLFPPWTAAAGVPFYLNVQYRINGLGVTMDVLSQNQKL 1006 Query: 105 ICRLPSNLFYEGNGLVDISSVARRLEYDSANP 136 I +N Y D ++ A N Sbjct: 1007 IANAFNNALYAIQEGFDATNSALVKIQAVVNA 1038 >tr:Q9WJC8_9VIRU Nonstructural polyprotein. Venezuelan equine encephalitis virus. Length = 2455 Score = 34.8 bits (79), Expect = 0.13 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%) Query: 27 DVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 D + IDEA A LI ++ KK +L GD KQ Sbjct: 782 DTLYIDEAFACHAGTLRALIAIIK-PKKAVLCGDPKQ 817 >tr:Q9WJD0_9VIRU Nonstructural polyprotein. Venezuelan equine encephalitis virus. Length = 2447 Score = 34.8 bits (79), Expect = 0.13 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%) Query: 27 DVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 D + IDEA A LI ++ KK +L GD KQ Sbjct: 782 DTLYIDEAFACHAGTLRALIAIIK-PKKAVLCGDPKQ 817 >tr:Q63EM2_BACCZ ATP-dependent nuclease, subunit A. Bacillus cereus (strain ZK). Length = 1241 Score = 34.8 bits (79), Expect = 0.13 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 14/176 (7%) Query: 23 KFKFDVVIIDE--AAQALEAECLIPLLL---AKKKFILVGDHKQLPPTIKSKKAAAKAGL 77 + KF V++DE ++ + + ++ +VGD KQ +I + A GL Sbjct: 402 RNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQ---SIYRFRLAEP-GL 457 Query: 78 EESLFERLVEL---GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 ++R + G + L +R E+ + +F + G Sbjct: 458 FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG--EAEFVVEIVEYLLRSGVP 188 + L + + E + E + EA + + ++ ++ SG Sbjct: 518 GASYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYE 573 >tr:Q5HUL4_CAMJR Hypothetical protein. Campylobacter jejuni (strain RM1221). Length = 447 Score = 34.8 bits (79), Expect = 0.13 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 12/108 (11%) Query: 26 FDVVIIDEAAQALEAEC-LIPLLLAKKKF----ILVGDHKQLPPTIKSKK---AAAKAGL 77 +++IIDE + +I L +F ++VGD QLPP IK KK Sbjct: 98 IELIIIDEISMVSANVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYA 157 Query: 78 EESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSV 125 S F +L ++L+ R + ++L G +D + Sbjct: 158 FSSFF--WQDLNFKNIKLSQPKRT--QNMEFYNHLSLIRQGFLDEKIL 201 >tr:Q7ULR2_RHOBA Probable swi/snf family helicase 2. Rhodopirellula baltica. Length = 1386 Score = 34.8 bits (79), Expect = 0.13 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 12/66 (18%) Query: 182 LLRSGVPPEDIGVITPYNGQVELIRNILNSRCS---------LKPVEVSTVDSFQGREKD 232 L+ G + V + + G + L+R+ L+ R ++VD+FQ E D Sbjct: 1232 LIEGGHK---VLVFSQFVGHLHLLRDRLDERKISYQYLDGSTPAKKRKTSVDAFQDGEGD 1288 Query: 233 IIILSL 238 + ++SL Sbjct: 1289 VFLISL 1294 >tr:Q9PNY8_CAMJE Putative helicase. Campylobacter jejuni. Length = 447 Score = 34.8 bits (79), Expect = 0.14 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 12/108 (11%) Query: 26 FDVVIIDEAAQALEAEC-LIPLLLAKKKF----ILVGDHKQLPPTIKSKK---AAAKAGL 77 +++IIDE + +I L +F ++VGD QLPP IK KK Sbjct: 98 IELIIIDEISMVSANVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYA 157 Query: 78 EESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSV 125 S F +L ++L+ R + ++L G +D + Sbjct: 158 FSSFF--WQDLNFKNIKLSQPKRT--QNMEFYNHLSLIRQGFLDEKIL 201 >tr:Q92NP4_RHIME PROBABLE DNA HELICASE II PROTEIN (EC 3.6.1.-). Rhizobium meliloti (Sinorhizobium meliloti). Length = 857 Score = 34.8 bits (79), Expect = 0.14 Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 24/122 (19%) Query: 89 GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPL 148 G V++L YR I ++L G + + L + NP Sbjct: 360 GAKVIKLERNYRSTEHILGAAAHLIAHNEG-----RLGKTLFTERTNPDDEKVHVH---- 410 Query: 149 SFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNI 208 ++ + EA + E +E L R DI ++ + Q+ + Sbjct: 411 ---------------AAWDSEEEARAIGEEIEQLQRKKHNLNDISILVRASFQMREFEDR 455 Query: 209 LN 210 Sbjct: 456 FV 457 >tr:Q88C31_PSEPK DNA helicase II. Pseudomonas putida (strain KT2440). Length = 728 Score = 34.8 bits (79), Expect = 0.14 Identities = 41/231 (17%), Positives = 71/231 (30%), Gaps = 52/231 (22%) Query: 23 KFKFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAA-AKAGLEE 79 + +F V++DE A++ L L + VGD Q + A Sbjct: 214 QRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSLMAVGDDDQ--SIYGWRGAKIENIHQYT 271 Query: 80 SLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFF 139 + F ++RL YR I + + L +G G Sbjct: 272 ADFP-----DAEMIRLEQNYRSTGGILKAANALIANNSG----------------RLGKE 310 Query: 140 PTPQFIVPLSFVDNSGVEEEEPEGYSYQN-PGEAEFVVEIVEYLLRSGVPPEDIGVITPY 198 Y+ N EA +VVE +E L++ G +I ++ Sbjct: 311 LWTDMGEGEPLTL-----------YAAYNEHDEARYVVETIESLVKQGNARNEIAILYRS 359 Query: 199 NGQVE-----LIRNILNSRC-----SLKPVEVSTVDSF----QGREKDIII 235 N Q L+R + R + E+ ++ +GR D + Sbjct: 360 NAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAAL 410 >tr:Q6U9W7_PRRSV ORF1b (Fragment). Porcine reproductive and respiratory syndrome virus (PRRSV). Length = 1463 Score = 34.8 bits (79), Expect = 0.14 Identities = 22/128 (17%), Positives = 38/128 (29%), Gaps = 16/128 (12%) Query: 31 IDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGV 90 +DEA + L LL+K + +GD +QL P + Sbjct: 869 LDEAGYCNHLDILR--LLSKTPLVCLGDLQQLHPVGFDSYCYVFDQM------------- 913 Query: 91 SVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA-NPGFFPTPQFIVPLS 149 +L YR P IC + E ++ + A P + + + Sbjct: 914 PQKQLTTIYRFGPNICAAIQPCYREKLESKARNTRVVFTTWPVAFGQVLTPYHKDRIGSA 973 Query: 150 FVDNSGVE 157 +S Sbjct: 974 ITIDSSQG 981 >tr:Q6N616_RHOPA ATP-dependent DNA helicase (EC 3.6.1.-). Rhodopseudomonas palustris. Length = 687 Score = 34.8 bits (79), Expect = 0.15 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 7/91 (7%) Query: 25 KFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 +FD V++DE AL+A L+ L +VGD Q + A + L+ F Sbjct: 233 RFDHVLVDEYQDTNALQARVLLALKPNGVGLTVVGDDAQ--AIYSFRAATVRNILD---F 287 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNLF 113 + + VV L+ YR I + + Sbjct: 288 PKAFDPPARVVTLDRNYRSTQAILSAANGVI 318 >tr:Q9DJN1_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 34.8 bits (79), Expect = 0.15 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ + L S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-------HYIHRNDLGVS 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLFYEGNGLVDISSVAR 127 L + R+ V YR +IC S + + SV + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFYPRHVATANTESVGK 168 >tr:Q9DJN5_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 34.8 bits (79), Expect = 0.15 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 12/109 (11%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ + L S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-------HYIHRNDLGVS 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLFYEGNGLVDISSVAR 127 L + R+ V YR +IC S + + SV + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFYPRHVATANTESVGK 168 >tr:Q8Y717_LISMO Lmo1509 protein. Listeria monocytogenes. Length = 798 Score = 34.8 bits (79), Expect = 0.15 Identities = 48/275 (17%), Positives = 82/275 (29%), Gaps = 74/275 (26%) Query: 24 FKFDVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 ++I+DE + L + L + +LVGD QLP G + Sbjct: 450 IDGRLLIVDEMSMVDIWLANQLFRALPAH-MQVVLVGDQDQLPSV----------GPGQV 498 Query: 81 LFERLVELGVSVVRLNVQYR---------MHPEI------CRLPSNL------------- 112 L + L + V L+ YR M I N Sbjct: 499 LKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFTKNSADRSFFHCTVNQI 558 Query: 113 --------------------------FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIV 146 Y G +DI + + ++ + G QF Sbjct: 559 GDVVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGD 618 Query: 147 PLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIR 206 V + ++ + N G+ +V I+ + +D+ V+ +V R Sbjct: 619 IKYRVHDKVLQLINQPEKNVFN-GDIGEIVSII--YAKENTEKQDLIVVQFDQTEVSYYR 675 Query: 207 NILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRS 241 N L ++ QG E I+I+ +VRS Sbjct: 676 QEFN---QLTHAYCCSIHKAQGSEFPIVIMPIVRS 707 >tr:Q9DJL6_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 34.8 bits (79), Expect = 0.15 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAIVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPRDICEWLSKFY 154 >tr:Q71ZG1_LISMF Helicase, putative, RecD/TraA family. Listeria monocytogenes (serotype 4b / strain F2365). Length = 798 Score = 34.8 bits (79), Expect = 0.15 Identities = 48/275 (17%), Positives = 82/275 (29%), Gaps = 74/275 (26%) Query: 24 FKFDVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 ++I+DE + L + L + +LVGD QLP G + Sbjct: 450 IDGRLLIVDEMSMVDIWLANQLFRALPAH-MQVVLVGDQDQLPSV----------GPGQV 498 Query: 81 LFERLVELGVSVVRLNVQYR---------MHPEI------CRLPSNL------------- 112 L + L + V L+ YR M I N Sbjct: 499 LKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFTKNSADRSFFHCTVNQI 558 Query: 113 --------------------------FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIV 146 Y G +DI + + ++ + G QF Sbjct: 559 GDVVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGD 618 Query: 147 PLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIR 206 V + ++ + N G+ +V I+ + +D+ V+ +V R Sbjct: 619 IKYRVHDKVLQLINQPEKNVFN-GDIGEIVSII--YAKENTEKQDLIVVQFDQTEVSYYR 675 Query: 207 NILNSRCSLKPVEVSTVDSFQGREKDIIILSLVRS 241 N L ++ QG E I+I+ +VRS Sbjct: 676 QEFN---QLTHAYCCSIHKAQGSEFPIVIMPIVRS 707 >tr:Q89FY7_BRAJA DNA helicase II. Bradyrhizobium japonicum. Length = 872 Score = 34.8 bits (79), Expect = 0.15 Identities = 31/162 (19%), Positives = 48/162 (29%), Gaps = 32/162 (19%) Query: 49 AKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRL 108 K VGD Q + A L FE G V+RL YR I Sbjct: 330 HVKNICCVGDDDQ--SIYGWRGAEVDNILR---FEH-DFPGAKVIRLERNYRSTGHILAA 383 Query: 109 PSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQN 168 S+L G G + + E+ G S+ + Sbjct: 384 ASHLIAHNEG----------------RLGKTLRTE---------DQDGEKVTVTG-SWDS 417 Query: 169 PGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILN 210 EA + E +E + R G +I ++ + Q+ + Sbjct: 418 EEEARGIGEEIEQIQRQGEKLNEIAILVRASYQMREFEDRFV 459 >tr:Q6A9G2_PROAC Transfer protein homolog TraA. Propionibacterium acnes. Length = 563 Score = 34.8 bits (79), Expect = 0.15 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 9/45 (20%) Query: 27 DVVIIDEAAQALEAECL------IPLLLAKKKFILVGDHKQLPPT 65 +VIIDEA+ AE L + A K +LVGD+ QLP Sbjct: 200 QLVIIDEAS---LAETLSLNRITLAAEEAGTKVLLVGDYAQLPSV 241 >tr:Q9WJD1_9VIRU Nonstructural polyprotein. Venezuelan equine encephalitis virus. Length = 2477 Score = 34.8 bits (79), Expect = 0.15 Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 32/139 (23%) Query: 23 KFKFDVVIIDEA--AQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 K + + +DEA A LI ++ +K +L GD KQ Sbjct: 778 KHSVETLYVDEAFACHAGTLRALIAIVK-PRKAVLCGDPKQ------------------- 817 Query: 81 LFERLVELGVSVVR-LNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFF 139 G + L V Y + EIC + ++SV L YD Sbjct: 818 -------CGFFNMMCLKVHY--NHEICTQVFHKSISRRCTKSVTSVVSTLFYDKKMRTTN 868 Query: 140 PTPQFIVPLSFVDNSGVEE 158 P I + +E Sbjct: 869 PRETPIEIDTTGSTKPKKE 887 >tr:Q9WJD3_9VIRU Nonstructural polyprotein. Venezuelan equine encephalitis virus. Length = 2481 Score = 34.8 bits (79), Expect = 0.15 Identities = 25/133 (18%), Positives = 41/133 (30%), Gaps = 30/133 (22%) Query: 27 DVVIIDEAAQALEAE--CLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 D + +DEA LI ++ KK +L GD KQ F Sbjct: 782 DTLYVDEAFACHTGTLRALIAIVK-PKKTVLCGDPKQCG-----------------FFNM 823 Query: 85 LVELGVSVVRLNVQY-------RMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPG 137 + L Q R P + + S LFY+ ++ R + + G Sbjct: 824 MCLKVHFNHELCTQVFHKSISRRCTPAVTSIVSTLFYDKRM---RTTNTRPTKIEIDTVG 880 Query: 138 FFPTPQFIVPLSF 150 + + L+ Sbjct: 881 GTKPRKDDLILTC 893 >tr:Q7VNC7_HAEDU Exodeoxyribonuclease V, alpha subunit. Haemophilus ducreyi. Length = 648 Score = 34.4 bits (78), Expect = 0.16 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 22 EKFKFDVVIIDEAAQA--LEAECLIPLLLAKKKFILVGDHKQLPPT 65 D++I+DEA+ E L+ L + I++GD QL Sbjct: 280 NPLHLDLLIVDEASMIDLFMIEKLMNALKPTTRLIMLGDKDQLASV 325 >tr:Q6GAV9_STAAS Hypothetical protein. Staphylococcus aureus (strain MSSA476). Length = 1217 Score = 34.4 bits (78), Expect = 0.17 Identities = 41/250 (16%), Positives = 81/250 (32%), Gaps = 33/250 (13%) Query: 13 ASKRKSLALEKFKFDVVIIDE-----AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIK 67 S + + F +++DE Q C+ +VGD KQ Sbjct: 382 GSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQ----SI 437 Query: 68 SKKAAAKAGLEESLFERLVELGVSV---VRLNVQYRMHPEICRLPSNLFYEGNGLVDISS 124 K A L ++R G + L+ +R E+ + +F Sbjct: 438 YKFRQADPSLFIEKYQRFTIDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEV 497 Query: 125 VARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLL- 183 P + P++ VE ++ + EA F+VE V+ +L Sbjct: 498 KYDEAAQLYYGA---PYDESDHPVNLKVL--VEADQEHSDLTGSEQEAHFIVEQVKDILE 552 Query: 184 RSGVPPE-----------DIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKD 232 V DI ++ GQ ++ + P V++ + + + + Sbjct: 553 HQKVYDMKTGSYRSATYKDIVILERSFGQARNLQQAFKN--EDIPFHVNSREGY-FEQTE 609 Query: 233 I-IILSLVRS 241 + ++LS +R+ Sbjct: 610 VRLVLSFLRA 619 >tr:Q5HHB7_STAAC Exonuclease RexA. Staphylococcus aureus (strain COL). Length = 1217 Score = 34.4 bits (78), Expect = 0.18 Identities = 41/250 (16%), Positives = 81/250 (32%), Gaps = 33/250 (13%) Query: 13 ASKRKSLALEKFKFDVVIIDE-----AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIK 67 S + + F +++DE Q C+ +VGD KQ Sbjct: 382 GSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQ----SI 437 Query: 68 SKKAAAKAGLEESLFERLVELGVSV---VRLNVQYRMHPEICRLPSNLFYEGNGLVDISS 124 K A L ++R G + L+ +R E+ + +F Sbjct: 438 YKFRQADPSLFIEKYQRFTIDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEV 497 Query: 125 VARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLL- 183 P + P++ VE ++ + EA F+VE V+ +L Sbjct: 498 KYDEAAQLYYGA---PYDESDHPVNLKVL--VEADQEHSDLTGSEQEAHFIVEQVKDILE 552 Query: 184 RSGVPPE-----------DIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKD 232 V DI ++ GQ ++ + P V++ + + + + Sbjct: 553 HQKVYDMKTGSYRSATYKDIVILERSFGQARNLQQAFKN--EDIPFHVNSREGY-FEQTE 609 Query: 233 I-IILSLVRS 241 + ++LS +R+ Sbjct: 610 VRLVLSFLRA 619 >tr:Q7A6H4_STAAN SA0828 protein. Staphylococcus aureus (strain N315). Length = 1217 Score = 34.4 bits (78), Expect = 0.18 Identities = 41/250 (16%), Positives = 81/250 (32%), Gaps = 33/250 (13%) Query: 13 ASKRKSLALEKFKFDVVIIDE-----AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIK 67 S + + F +++DE Q C+ +VGD KQ Sbjct: 382 GSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQ----SI 437 Query: 68 SKKAAAKAGLEESLFERLVELGVSV---VRLNVQYRMHPEICRLPSNLFYEGNGLVDISS 124 K A L ++R G + L+ +R E+ + +F Sbjct: 438 YKFRQADPSLFIEKYQRFTIDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEV 497 Query: 125 VARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLL- 183 P + P++ VE ++ + EA F+VE V+ +L Sbjct: 498 KYDEAAQLYYGA---PYDESDHPVNLKVL--VEADQEHSDLTGSEQEAHFIVEQVKDILE 552 Query: 184 RSGVPPE-----------DIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKD 232 V DI ++ GQ ++ + P V++ + + + + Sbjct: 553 HQKVYDMKTGSYRSATYKDIVILERSFGQARNLQQAFKN--EDIPFHVNSREGY-FEQTE 609 Query: 233 I-IILSLVRS 241 + ++LS +R+ Sbjct: 610 VRLVLSFLRA 619 >tr:Q99VC3_STAAM Similar to ATP-dependent nuclease subunit A. Staphylococcus aureus (strain Mu50 / ATCC 700699). Length = 1217 Score = 34.4 bits (78), Expect = 0.18 Identities = 41/250 (16%), Positives = 81/250 (32%), Gaps = 33/250 (13%) Query: 13 ASKRKSLALEKFKFDVVIIDE-----AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIK 67 S + + F +++DE Q C+ +VGD KQ Sbjct: 382 GSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQ----SI 437 Query: 68 SKKAAAKAGLEESLFERLVELGVSV---VRLNVQYRMHPEICRLPSNLFYEGNGLVDISS 124 K A L ++R G + L+ +R E+ + +F Sbjct: 438 YKFRQADPSLFIEKYQRFTIDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEV 497 Query: 125 VARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLL- 183 P + P++ VE ++ + EA F+VE V+ +L Sbjct: 498 KYDEAAQLYYGA---PYDESDHPVNLKVL--VEADQEHSDLTGSEQEAHFIVEQVKDILE 552 Query: 184 RSGVPPE-----------DIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKD 232 V DI ++ GQ ++ + P V++ + + + + Sbjct: 553 HQKVYDMKTGSYRSATYKDIVILERSFGQARNLQQAFKN--EDIPFHVNSREGY-FEQTE 609 Query: 233 I-IILSLVRS 241 + ++LS +R+ Sbjct: 610 VRLVLSFLRA 619 >tr:Q8NXE9_STAAW MW0849 protein. Staphylococcus aureus (strain MW2). Length = 1217 Score = 34.4 bits (78), Expect = 0.18 Identities = 41/250 (16%), Positives = 81/250 (32%), Gaps = 33/250 (13%) Query: 13 ASKRKSLALEKFKFDVVIIDE-----AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIK 67 S + + F +++DE Q C+ +VGD KQ Sbjct: 382 GSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQ----SI 437 Query: 68 SKKAAAKAGLEESLFERLVELGVSV---VRLNVQYRMHPEICRLPSNLFYEGNGLVDISS 124 K A L ++R G + L+ +R E+ + +F Sbjct: 438 YKFRQADPSLFIEKYQRFTIDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEV 497 Query: 125 VARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLL- 183 P + P++ VE ++ + EA F+VE V+ +L Sbjct: 498 KYDEAAQLYYGA---PYDESDHPVNLKVL--VEADQEHSDLTGSEQEAHFIVEQVKDILE 552 Query: 184 RSGVPPE-----------DIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKD 232 V DI ++ GQ ++ + P V++ + + + + Sbjct: 553 HQKVYDMKTGSYRSATYKDIVILERSFGQARNLQQAFKN--EDIPFHVNSREGY-FEQTE 609 Query: 233 I-IILSLVRS 241 + ++LS +R+ Sbjct: 610 VRLVLSFLRA 619 >tr:Q9IFX0_9CLOS P349 protein. Citrus tristeza virus. Length = 3115 Score = 34.4 bits (78), Expect = 0.18 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ + L S Sbjct: 2778 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-------HYIHRNDLGVS 2829 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 2830 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 2864 >tr:Q9DJP8_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 369 Score = 34.4 bits (78), Expect = 0.18 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ + L S Sbjct: 66 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-------HYIHRNDLGVS 117 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 118 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 152 >tr:Q8K8J7_STRP3 Putative SNF helicase. Streptococcus pyogenes (serotype M3). Length = 1032 Score = 34.4 bits (78), Expect = 0.19 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 6/50 (12%) Query: 7 MTCTGAASKRKSLALEK-FKFDVVIIDEA-----AQALEAECLIPLLLAK 50 +T T +S R+ + F +D +I+DEA AQ + CL A Sbjct: 680 ITITSYSSFRQDFETYQAFHYDYLILDEAQVIKNAQTKISHCLRAFNTAN 729 >tr:Q5XDR2_STRP6 SWF/SNF family helicase. Streptococcus pyogenes (serotype M6). Length = 1032 Score = 34.4 bits (78), Expect = 0.19 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 6/50 (12%) Query: 7 MTCTGAASKRKSLALEK-FKFDVVIIDEA-----AQALEAECLIPLLLAK 50 +T T +S R+ + F +D +I+DEA AQ + CL A Sbjct: 680 ITITSYSSFRQDFETYQAFHYDYLILDEAQVIKNAQTKISHCLRAFNTAN 729 >tr:Q9A1C9_STRPY Putative SNF helicase. Streptococcus pyogenes. Length = 1032 Score = 34.4 bits (78), Expect = 0.19 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 6/50 (12%) Query: 7 MTCTGAASKRKSLALEK-FKFDVVIIDEA-----AQALEAECLIPLLLAK 50 +T T +S R+ + F +D +I+DEA AQ + CL A Sbjct: 680 ITITSYSSFRQDFETYQAFHYDYLILDEAQVIKNAQTKISHCLRAFNTAN 729 >tr:Q6TNF9_CVHOC S protein. Human coronavirus (strain OC43) (HCoV-OC43). Length = 1361 Score = 34.4 bits (78), Expect = 0.19 Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 15/92 (16%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH-------------PE 104 K LPP + + + A SLF LNVQYR++ Sbjct: 955 KVLPPLLSENQISGYTLAATSASLFPLWTAAAGVPFYLNVQYRINGLGVTMDVLSQNQKL 1014 Query: 105 ICRLPSNLFYEGNGLVDISSVARRLEYDSANP 136 I +N Y D ++ A N Sbjct: 1015 IANAFNNALYAIQEGFDATNSALVKIQAVVNA 1046 >tr:Q8P2J4_STRP8 Putative SNF helicase. Streptococcus pyogenes (serotype M18). Length = 1031 Score = 34.4 bits (78), Expect = 0.19 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 6/50 (12%) Query: 7 MTCTGAASKRKSLALEK-FKFDVVIIDEA-----AQALEAECLIPLLLAK 50 +T T +S R+ + F +D +I+DEA AQ + CL A Sbjct: 679 ITITSYSSFRQDFETYQAFHYDYLILDEAQVIKNAQTKISHCLRAFNTAN 728 >tr:Q9DJR0_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 34.4 bits (78), Expect = 0.20 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ + L S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-------HYIHRNDLGVS 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q9R6F0_9RHIZ Tiorf109 protein. Agrobacterium tumefaciens. Length = 1194 Score = 34.4 bits (78), Expect = 0.20 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 4/65 (6%) Query: 5 VAMTCTGAASKRKSLALEKFKFDVV-IIDEAAQAL---EAECLIPLLLAKKKFILVGDHK 60 + + R ++ V ++DEA A + A K +LVGD Sbjct: 447 IIARTLSSWELRWQQERDRLDDRTVMVLDEAGMVSSRQMAMLVQAATEAGAKLVLVGDPD 506 Query: 61 QLPPT 65 QL P Sbjct: 507 QLQPI 511 >tr:Q9DJQ2_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 257 Score = 34.4 bits (78), Expect = 0.20 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ + L S Sbjct: 63 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-------HYIHRNDLGVS 114 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 115 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 149 >tr:Q6FF15_ACIAD Exonuclease V, alpha subunit (EC 3.1.11.5). Acinetobacter sp. (strain ADP1). Length = 592 Score = 34.4 bits (78), Expect = 0.20 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 26 FDVVIIDEAAQ--ALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAA 73 +DV+++DEA+ A L + A + IL+GD QL A Sbjct: 239 YDVIVVDEASMLDLKLATLLFEAVPAGCRLILLGDANQLASVDVGSVLAD 288 >tr:Q5FKT7_LACAC Exodeoxyribonuclease V alpha chain (EC 3.1.11.5). Lactobacillus acidophilus. Length = 784 Score = 34.0 bits (77), Expect = 0.21 Identities = 46/276 (16%), Positives = 82/276 (29%), Gaps = 69/276 (25%) Query: 20 ALEKFKFDVVIIDEAAQALEAE--CLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGL 77 L + +++IIDE + L+ + K + VGD QLP + L Sbjct: 423 ELNELNGEILIIDEMSMVDMFLFRQLLSSINQVKHIVFVGDKDQLPSV---GAGNVFSDL 479 Query: 78 EESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL-FYEGNGLVDISSVARRLEYDSANP 136 +S L +R + + EG + + + S P Sbjct: 480 IKS-------GAFPTAILKQIHRQGDDSTIIALAHDVNEGKDEQALFKKTKNYSFISCRP 532 Query: 137 -----------------GFFPTPQFIVPLSFVDNSGVEEEE-----------PEGYSYQN 168 GF ++ + N GV + S + Sbjct: 533 ELVGDAVGQIVELALKRGFAKDDIQVLGAMYHGNGGVNNLNDIIQDIMNPPKAKSKSIEV 592 Query: 169 PGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCS------LKPVEVS- 221 E + + + L + P +DI YNGQ+ I +I + E++ Sbjct: 593 HNEIFRIGDRILQLQNN--PEKDI-----YNGQIGKIISIDENNSQKCMVANFDDREITF 645 Query: 222 --------------TVDSFQGREKDIIILSLVRSNR 243 T+ QG E +++L+L N Sbjct: 646 SKKDMNDITRAYAITIHKSQGSEFPLVVLNLTMQNF 681 >tr:Q9DJP3_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 368 Score = 34.0 bits (77), Expect = 0.21 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ + L S Sbjct: 67 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-------HYIHRNDLGVS 118 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 119 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 153 >tr:Q8R698_FUSNN DNA helicase II (EC 3.6.1.-). Fusobacterium nucleatum (subsp. nucleatum). Length = 919 Score = 34.0 bits (77), Expect = 0.21 Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 11/114 (9%) Query: 18 SLALEKFKFDVVIIDEAAQAL--EAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKA 75 L FD +++DE + + + L+ + KK +VGD Q + A A Sbjct: 223 FLEKINNNFDYIMVDEYQDSNKIQEKILLFISKNKKNICVVGDEDQ----SIYRFRGASA 278 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRL-----PSNLFYEGNGLVDISS 124 + + + L YR +I + +Y +I S Sbjct: 279 ENILNFSKHFNNDECKCIVLEENYRSVNDIVEFNNNWINAINWYGNRFEKNIVS 332 >tr:Q9DJQ6_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 357 Score = 34.0 bits (77), Expect = 0.21 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ + L S Sbjct: 63 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-------HYIHRNDLGVS 114 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 115 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 149 >tr:Q9DJP5_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 319 Score = 34.0 bits (77), Expect = 0.21 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ + L S Sbjct: 65 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-------HYIHRNDLGVS 116 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 117 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 151 >tr:Q7T738_9CLOS P182. Little cherry virus 2. Length = 1640 Score = 34.0 bits (77), Expect = 0.22 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 8/101 (7%) Query: 12 AASKRKSLALEKFKFDVVIIDEAAQALEAECLI-PLLLAKKKFILVGDHKQLPPTIKSKK 70 R +L K D V IDE E I +L + L GD +Q+P + + Sbjct: 1397 TIDSRVMNSLRAGKCDTVCIDECFLVHAGELKICAVLAGADEVYLYGDSQQIPFINRLQS 1456 Query: 71 AAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSN 111 A K G+ ++ V++ NV YR ++C + S Sbjct: 1457 FACKNGVVKTD-------KFKVIKRNVSYRCPSDVCVMLSE 1490 >tr:Q8R8A3_THETN ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member. Thermoanaerobacter tengcongensis. Length = 723 Score = 34.0 bits (77), Expect = 0.22 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%) Query: 27 DVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQLPPT 65 DVVIIDE + L A L K +++GD QLP Sbjct: 412 DVVIIDEFSMVDNELAASLFKALRK-DTKLVIIGDMDQLPSV 452 >tr:Q58NS1_9CORO Spike glycoprotein. Bovine coronavirus. Length = 1363 Score = 34.0 bits (77), Expect = 0.23 Identities = 25/99 (25%), Positives = 33/99 (33%), Gaps = 13/99 (13%) Query: 10 TGAASKRKSLALEKFKFDVVIIDEAAQAL----EAECLIPLLLAKKKFILVGDHKQLPPT 65 + S + L K KF V EA E LI + K LPP Sbjct: 910 VSSRSAIEDLLFSKVKFSDVGFVEAYNNCTGGAEIRDLICVQSYNG-------IKVLPPL 962 Query: 66 IKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 + + + A SLF LNVQYR++ Sbjct: 963 LSENQISGYTLAATSASLFPPWSAAAGVPFYLNVQYRIN 1001 >tr:Q696Q6_CVHOC Spike surface glycoprotein. Human coronavirus (strain OC43) (HCoV-OC43). Length = 1353 Score = 34.0 bits (77), Expect = 0.23 Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 15/92 (16%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH-------------PE 104 K LPP + + + A SLF LNVQYR++ Sbjct: 947 KVLPPLLSENQISGYTLAATSASLFPPWTAAAGVPFYLNVQYRINGLGVTMDVLSQNQKL 1006 Query: 105 ICRLPSNLFYEGNGLVDISSVARRLEYDSANP 136 I +N Y D ++ A N Sbjct: 1007 IANAFNNALYAIQEGFDATNSALVKIQAVVNA 1038 >tr:Q4ZYM0_PSESY Exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5). Pseudomonas syringae pv. syringae B728a. Length = 697 Score = 34.0 bits (77), Expect = 0.23 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Query: 27 DVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQLPPT 65 DV+++DEA+ + A L L + +L+GD QL Sbjct: 320 DVLVVDEASMIDLEMMANLLYALPAH-ARMVLLGDKDQLASV 360 >tr:Q6KHF5_MYCMO ATP-dependent DNA helicase (EC 3.6.1.-). Mycoplasma mobile. Length = 723 Score = 34.0 bits (77), Expect = 0.23 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 9/96 (9%) Query: 24 FKFDVVIIDEAAQALEAEC--LIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESL 81 +F +++DE Q +I L +VGD Q TI S A + L Sbjct: 215 RRFKYILVDE-FQDTSPIQYEIIKTLAQNHNLTIVGDPDQ---TIYS---WRGANVNLIL 267 Query: 82 FERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN 117 + LN+ YR +I + ++L + Sbjct: 268 DFHKDFENAKTINLNLNYRSTEKILKHANSLIHFNK 303 >tr:Q8CPT9_STAEP ATP-dependent nuclease subunit A. Staphylococcus epidermidis. Length = 1224 Score = 34.0 bits (77), Expect = 0.23 Identities = 39/252 (15%), Positives = 78/252 (30%), Gaps = 37/252 (14%) Query: 13 ASKRKSLALEKFKFDVVIIDE-----AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIK 67 S + + F +++DE Q C+ +VGD KQ Sbjct: 387 GSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCIKTGEEHDGNLFMVGDVKQ----SI 442 Query: 68 SKKAAAKAGLEESLFERLVELGVSV---VRLNVQYRMHPEICRLPSNLFYEGNGLVDISS 124 K A L + R G + L+ +R E+ + LF Sbjct: 443 YKFRQADPSLFIEKYNRFSSSGNESGLRIDLSQNFRSRQEVLSTTNYLFKHMMDEQVGEI 502 Query: 125 VARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE---- 180 + + P + P+ VE + EA ++VE V+ Sbjct: 503 S---YDDAAQLYFGAPYDEVSHPVQLRAL--VEASSENSDLTGSEQEANYIVEQVKDIIN 557 Query: 181 ----------YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGRE 230 ++ DI ++ GQ ++ + P V++ + + + Sbjct: 558 HQNVYDMKTGQYRKATYK--DIVILERSFGQARNLQQAFKNNDI--PFHVNSKEGY-FEQ 612 Query: 231 KDI-IILSLVRS 241 ++ ++LS +R+ Sbjct: 613 TEVRLVLSFLRT 624 >tr:Q97F87_CLOAB ATP-dependent exoDNAse (Exonuclease V), alpha subunit, RecD. Clostridium acetobutylicum. Length = 739 Score = 34.0 bits (77), Expect = 0.24 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Query: 27 DVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQLPPT 65 DVVIIDEA+ L L + + + I+VGD QLP Sbjct: 414 DVVIIDEASMIDVVLMNSLLKSIGMGT-RVIIVGDVDQLPSV 454 >tr:Q5HQJ4_STAEQ Exonuclease RexA. Staphylococcus epidermidis (strain ATCC 35984 / RP62A). Length = 1218 Score = 34.0 bits (77), Expect = 0.24 Identities = 39/252 (15%), Positives = 78/252 (30%), Gaps = 37/252 (14%) Query: 13 ASKRKSLALEKFKFDVVIIDE-----AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIK 67 S + + F +++DE Q C+ +VGD KQ Sbjct: 381 GSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCIKTGEEHDGNLFMVGDVKQ----SI 436 Query: 68 SKKAAAKAGLEESLFERLVELGVSV---VRLNVQYRMHPEICRLPSNLFYEGNGLVDISS 124 K A L + R G + L+ +R E+ + LF Sbjct: 437 YKFRQADPSLFIEKYNRFSSSGNESGLRIDLSQNFRSRQEVLSTTNYLFKHMMDEQVGEI 496 Query: 125 VARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVE---- 180 + + P + P+ VE + EA ++VE V+ Sbjct: 497 S---YDDAAQLYFGAPYDEVSHPVQLRAL--VEASSENSDLTGSEQEANYIVEQVKDIIN 551 Query: 181 ----------YLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGRE 230 ++ DI ++ GQ ++ + P V++ + + + Sbjct: 552 HQNVYDMKTGQYRKATYK--DIVILERSFGQARNLQQAFKNNDI--PFHVNSKEGY-FEQ 606 Query: 231 KDI-IILSLVRS 241 ++ ++LS +R+ Sbjct: 607 TEVRLVLSFLRT 618 >tr:Q9DTG5_9CLOS 349-kDa polyprotein. Citrus tristeza virus. Length = 3132 Score = 34.0 bits (77), Expect = 0.24 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 2795 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 2846 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 2847 LLHDIDAFIEPQHRVYGEVSYRCPWDICEWLSKFY 2881 >tr:Q6HM43_BACHK ATP-dependent nuclease, subunit A. Bacillus thuringiensis (subsp. konkukian). Length = 1241 Score = 34.0 bits (77), Expect = 0.24 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 14/176 (7%) Query: 23 KFKFDVVIIDE--AAQALEAECLIPLLL---AKKKFILVGDHKQLPPTIKSKKAAAKAGL 77 + KF V++DE ++ + + ++ +VGD KQ +I + A GL Sbjct: 402 RNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQ---SIYRFRLAEP-GL 457 Query: 78 EESLFERLVEL---GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 ++R + G + L +R E+ + +F + G Sbjct: 458 FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG--EAEFVVEIVEYLLRSGVP 188 + L + + E + E + EA + + ++ ++ SG Sbjct: 518 GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYE 573 >tr:Q6KIJ7_MYCMO Exodeoxyribonuclease V alpha chain (EC 3.1.11.5). Mycoplasma mobile. Length = 734 Score = 34.0 bits (77), Expect = 0.24 Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 22/101 (21%) Query: 12 AASKRKSLALEKFKFD----------VVIIDEAAQALE--AECLIPLLLAKKKFILVGDH 59 + +FD V+IIDE + L+ ++ +K ILVGD+ Sbjct: 396 TIHSFLKWNKDNNQFDFKTINYDHVKVIIIDEFSMVDTYVFSTLLKVVPNLEKLILVGDY 455 Query: 60 KQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYR 100 QLP K L ES V L YR Sbjct: 456 NQLPSI---KGGQILKDLIESNL-------FKVFFLKTNYR 486 >tr:Q8JTI3_9CLOS Helicase (Fragment). Little cherry virus 2. Length = 1112 Score = 34.0 bits (77), Expect = 0.24 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 8/101 (7%) Query: 12 AASKRKSLALEKFKFDVVIIDEAAQALEAECLI-PLLLAKKKFILVGDHKQLPPTIKSKK 70 R +L + D V IDE E I +L + L GD +Q+P + + Sbjct: 869 TIDSRVMNSLRAGRCDTVCIDECFLVHAGELKICAVLAGADEVYLYGDSQQIPFINRLQS 928 Query: 71 AAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSN 111 A K G+ ++ V++ NV YR ++C + S Sbjct: 929 FACKNGVVKTD-------KFKVIKRNVSYRCPSDVCVMLSE 962 >tr:Q92XJ5_RHIME Putative UvrD2 DNA helicase (EC 3.6.1.-). Rhizobium meliloti (Sinorhizobium meliloti). Length = 689 Score = 34.0 bits (77), Expect = 0.25 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 7/102 (6%) Query: 14 SKRKSLALEKFKFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKA 71 S +FD V++DE L++ L+ L + +VGD Q + A Sbjct: 224 SDASLADDIGNRFDYVLVDEYQDTNKLQSSVLLALKPDGRGLTVVGDDAQ--SIYSFRAA 281 Query: 72 AAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLF 113 + L+ F + +V L+ YR I + + Sbjct: 282 TVRNILD---FPKQFAPAAEIVTLDRNYRSTQPILAAANGVI 320 >tr:Q6GIC1_STAAR Hypothetical protein. Staphylococcus aureus (strain MRSA252). Length = 1217 Score = 34.0 bits (77), Expect = 0.25 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 33/250 (13%) Query: 13 ASKRKSLALEKFKFDVVIIDE-----AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIK 67 S + + F +++DE Q C+ +VGD KQ Sbjct: 382 GSPSEIAESYRQHFHEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQ----SI 437 Query: 68 SKKAAAKAGLEESLFERLVELGVSV---VRLNVQYRMHPEICRLPSNLFYEGNGLVDISS 124 K A L ++R G + L+ +R E+ + +F Sbjct: 438 YKFRQADPSLFIEKYQRFTLDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEV 497 Query: 125 VARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLL- 183 R + + P + P++ VE ++ + EA F+VE V+ +L Sbjct: 498 ---RYDEAAQLYYGAPYDESDHPVNLKVL--VEADQEHSDLTGSEQEAHFIVEQVKDILE 552 Query: 184 RSGVPPE-----------DIGVITPYNGQVELIRNILNSRCSLKPVEVSTVDSFQGREKD 232 V DI ++ GQ ++ + P V++ + + + + Sbjct: 553 HQKVFDMKTGSYRSATYKDIVILERSFGQARNLQQAFKN--EDIPFHVNSREGY-FEQTE 609 Query: 233 I-IILSLVRS 241 + ++LS +R+ Sbjct: 610 VRLVLSFLRA 619 >tr:Q81GP9_BACCR ATP-dependent nuclease subunit A. Bacillus cereus (strain ATCC 14579 / DSM 31). Length = 1241 Score = 34.0 bits (77), Expect = 0.25 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 14/176 (7%) Query: 23 KFKFDVVIIDE--AAQALEAECLIPLLL---AKKKFILVGDHKQLPPTIKSKKAAAKAGL 77 + KF V++DE ++ + + ++ +VGD KQ +I + A GL Sbjct: 402 RNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQ---SIYRFRLAEP-GL 457 Query: 78 EESLFERLVEL---GVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 ++R + G + L +R E+ + +F + G Sbjct: 458 FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 517 Query: 135 NPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG--EAEFVVEIVEYLLRSGVP 188 + L + + E + E + EA + + ++ ++ SG Sbjct: 518 GATYPEGEDVAAELLCIQQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYE 573 >tr:Q5X4A5_LEGPA Hypothetical protein. Legionella pneumophila (strain Paris). Length = 1076 Score = 34.0 bits (77), Expect = 0.25 Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 31/190 (16%) Query: 22 EKFKFDVVIIDE--AAQALEAECLIPLLLA-----KKKFILVGDHKQLPPTIKSKKAAAK 74 ++IDE + E L L+ K LVGD Q Sbjct: 402 LDHSIHHLLIDEFQDTSITQFELLTKLVQGWLPGEGKTLFLVGDPMQ--------SIYRF 453 Query: 75 AGLEESLFERLVELGVSVVRLNV-----QYRMHPEICRLPSNLF---YEGNGLVDISSVA 126 E LF + E G+ VRL +R I ++ F + ++ +V+ Sbjct: 454 RQAEVGLFFQAKEHGIGPVRLKSLELRCNFRSTETIVNWVNDHFSKIFSQQVDIESGAVS 513 Query: 127 RRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVV--------EI 178 T Q + + + E +NP + V+ EI Sbjct: 514 FHPSVHVIEKNESSTIQAVQFKNREQEARHLIEIINSELNRNPEQTIAVLVRTRTQLPEI 573 Query: 179 VEYLLRSGVP 188 + L ++ +P Sbjct: 574 ISLLRQNNIP 583 >tr:Q54Z42_DICDI Hypothetical protein. Dictyostelium discoideum (Slime mold). Length = 669 Score = 34.0 bits (77), Expect = 0.25 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 11/59 (18%) Query: 28 VVIIDEAAQA-----LEAECLIPLLLAKKK------FILVGDHKQLPPTIKSKKAAAKA 75 V+IIDE + + + + ++ + +LVGD QLPP + KA Sbjct: 341 VLIIDEISMIDAELFEKLDTIGQMVRGNNQPFGGIQLVLVGDFFQLPPVHGNYAFECKA 399 >tr:Q5ZUI6_LEGPH ATP-dependent DNA helicase (UvrD/Rep helicase). Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152). Length = 1076 Score = 34.0 bits (77), Expect = 0.25 Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 31/190 (16%) Query: 22 EKFKFDVVIIDE--AAQALEAECLIPLLLA-----KKKFILVGDHKQLPPTIKSKKAAAK 74 ++IDE + E L L+ K LVGD Q Sbjct: 402 LDHSIHHLLIDEFQDTSITQFELLTKLVQGWLPGEGKTLFLVGDPMQ--------SIYRF 453 Query: 75 AGLEESLFERLVELGVSVVRLNV-----QYRMHPEICRLPSNLF---YEGNGLVDISSVA 126 E LF + E G+ VRL +R I ++ F + ++ +V+ Sbjct: 454 RQAEVGLFFQAKEHGIGPVRLKSLELRCNFRSTETIVNWVNDHFSKIFSQQVDIESGAVS 513 Query: 127 RRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVV--------EI 178 T Q + + + E +NP + V+ EI Sbjct: 514 FHPSVHVIEKNESSTIQAVQFKNREQEARHLIEIINSELNRNPEQTIAVLVRTRTQLPEI 573 Query: 179 VEYLLRSGVP 188 + L ++ +P Sbjct: 574 ISLLRQNNIP 583 >tr:Q60AZ5_METCA Exodeoxyribonuclease V, beta subunit (EC 3.1.11.5). Methylococcus capsulatus. Length = 1200 Score = 34.0 bits (77), Expect = 0.25 Identities = 37/211 (17%), Positives = 56/211 (26%), Gaps = 29/211 (13%) Query: 25 KFDVVIIDEAAQALEAE---CLIPLLLAKKKF----ILVGDHKQLPPTIKSKKAAAKAGL 77 ++ V +IDE Q + L LA+ VGD KQ + A L Sbjct: 383 RYPVALIDE-FQDTDPLQFAIFRALYLAEGAVSGPVFFVGDPKQ--AIYGFRNADLYTYL 439 Query: 78 EESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEY--DSAN 135 L R E+ + LF + + R Sbjct: 440 GAR------HQADREYTLVENQRSVTEVIDACNALFGANPRAFLLEGLEYRPVRPGAKPR 493 Query: 136 PGFFPTPQFIVPLSFV----DNSGVEEEEPEGYSYQNPGEAEFVVEIVEY-------LLR 184 P F + P D +G E A + +++ L Sbjct: 494 PVFTDVTEPRSPFQVWLLPRDEAGGWLPRTEAVRRCTDTTAAEIARLIQEGMAGRIRLGE 553 Query: 185 SGVPPEDIGVITPYNGQVELIRNILNSRCSL 215 + DI V+ + Q LIR L Sbjct: 554 RALRASDIAVLVRRHAQGRLIRQALARLGVG 584 >tr:Q8L1Z1_PSESX Exonuclease V alpha subunit RecD. Pseudomonas syringae. Length = 694 Score = 34.0 bits (77), Expect = 0.26 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Query: 27 DVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQLPPT 65 DV+++DEA+ + A L L + +L+GD QL Sbjct: 318 DVLVVDEASMIDLEMMANLLDALPAH-ARLVLLGDKDQLASV 358 >tr:Q61EE1_CAEBR Hypothetical protein CBG12107. Caenorhabditis briggsae. Length = 733 Score = 34.0 bits (77), Expect = 0.26 Identities = 30/122 (24%), Positives = 42/122 (34%), Gaps = 3/122 (2%) Query: 60 KQLPPTIKSKKAAAKAG-LEESLFERLVELGVSVVRLNVQYRMHP-EICRLPSNLFYEGN 117 KQ PPT +S AA+ LE+ L ++L + V L R H E+ + L E Sbjct: 103 KQAPPTSQSHVDAARIELLEQELKQKLEQNERLVSELAENERQHAVEMAEMSEKLAKEMR 162 Query: 118 GLVDISSVARRLEYDSANPGFFPTPQF-IVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVV 176 L D R NP V V E+ ++ EA +V Sbjct: 163 KLEDEVKRMRIRTKMIQNPKEDVEGSPEDVDDMRKSEDVVVEDIGSPEPPESQEEARIMV 222 Query: 177 EI 178 Sbjct: 223 AE 224 >tr:Q6NAB2_RHOPA Possible deoxyribonuclease. Rhodopseudomonas palustris. Length = 369 Score = 34.0 bits (77), Expect = 0.26 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 28 VVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 +++IDE + E E L+ +++GD QLPP Sbjct: 111 LIVIDECSMVDE-ELGRDLMSFDCPLLVLGDPAQLPPI 147 >tr:Q8DSC6_STRMU Putative exodeoxyribonuclease V, similar to conjugation transfer protein. Streptococcus mutans. Length = 787 Score = 34.0 bits (77), Expect = 0.26 Identities = 34/182 (18%), Positives = 57/182 (31%), Gaps = 50/182 (27%) Query: 27 DVVIIDEAAQALEAECLIPLLLA-----KKKFILVGDHKQLPPTIKSKKAAAKAGLEESL 81 D++IIDE + + + L + I+VGD QLP G + L Sbjct: 430 DLIIIDEFSMV---DTWLANQLFSAIASNTQVIIVGDSDQLPSV----------GPGQIL 476 Query: 82 FERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPT 141 + L + V L +R S L Sbjct: 477 ADLLKINRLPQVSLTKIFR-------------------QSEDSTIVTLANQIR------- 510 Query: 142 PQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITP-YNG 200 Q +P F ++ + + +IV L+SG+ ++I ++ P Y G Sbjct: 511 -QGRLPTDFTAKKADRSYFEAQSTHI----PQMIQKIVSSALKSGIDAQEIQILAPMYRG 565 Query: 201 QV 202 Q Sbjct: 566 QA 567 >tr:Q6CAI0_YARLI Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica. Yarrowia lipolytica (Candida lipolytica). Length = 671 Score = 34.0 bits (77), Expect = 0.26 Identities = 40/214 (18%), Positives = 65/214 (30%), Gaps = 37/214 (17%) Query: 28 VVIIDEAAQALEAECLIPL------------LLAKKKFILVGDHKQLPPTIKSKKAAAKA 75 V+IIDE + A+ L + +L GD QLPP + + Sbjct: 219 VLIIDEVSMF-PADAFGKLDIVGRRVRNKDRPFGGIQLVLTGDFFQLPPVGMNGTWLFSS 277 Query: 76 GLEESLFERLVELGVSVV-----RLNVQYRM--------HPEICRLPSNLFYEGNGLVDI 122 + V+L L R H E+ R L E + I Sbjct: 278 DSFKKAIAHKVQLNKVFRQQGDTVLTDMLRKLRFSNPEDHDELDRFFRKLSRELDDSDGI 337 Query: 123 SSVARRLEYDSANPGFFPTPQFIVPLSFV-------DNSGVEEEEPEGYSYQNPGEAEFV 175 D+ N + + F D + +E+ +P G +N + V Sbjct: 338 VPTVLEPRNDAVNAKNQMELEKLPGPLFTLKSHDTADGNSLEDIDPNGRFLKNLDDNLRV 397 Query: 176 VEIVEYLLRSGVPPEDIGVITPYNGQVELIRNIL 209 V ++ L + V Y VEL+ + Sbjct: 398 VSELKLKLGAQVMVMK----NIYKDHVELVNGNM 427 >tr:Q65LJ9_BACLD AddA (ATP-dependent deoxyribonuclease) (Subunit A). Bacillus licheniformis (strain DSM 13 / ATCC 14580). Length = 1230 Score = 33.6 bits (76), Expect = 0.27 Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 17/181 (9%) Query: 13 ASKRKSLALEKFKFDVVIIDEAAQALEA--ECLIPLLL---AKKKFILVGDHKQLPPTIK 67 A ++ + +F V++DE Q E ++ L+ + +VGD KQ +I Sbjct: 388 AVPSEAAKFYRHQFHEVLVDE-YQDTNLVQEAILKLVAKEEHEGNLFMVGDVKQ---SIY 443 Query: 68 SKKAAAKAGLEESLFERLVELGVSV---VRLNVQYRMHPEICRLPSNLFYEGNGLVDISS 124 + A L S ++R + G + LN +R +I + LF + G Sbjct: 444 RFRLAEP-LLFLSKYKRFTDDGSGSGQKIDLNKNFRSRSDILDSTNFLFKQLMGEKVGEV 502 Query: 125 VARRLEYDSANPGFFPTPQFIVPLSFVDN----SGVEEEEPEGYSYQNPGEAEFVVEIVE 180 + P L ++ G E EE E + A + ++ Sbjct: 503 EYDEQAELKLGASYPPNEATKTELLLIETPSGAPGEEAEELEAVQLEARAMAGQIRRLIT 562 Query: 181 Y 181 Sbjct: 563 E 563 >tr:Q89EN2_BRAJA Exodeoxyribosylnuclease. Bradyrhizobium japonicum. Length = 384 Score = 33.6 bits (76), Expect = 0.28 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 28 VVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 +++IDE + +AE L+ +++GD QLPP Sbjct: 124 LIVIDECSMV-DAELGRDLMSFDCPLLVLGDPAQLPPI 160 >tr:Q82CL6_STRAW Putative exodeoxyribonuclease V. Streptomyces avermitilis. Length = 758 Score = 33.6 bits (76), Expect = 0.29 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 8/44 (18%) Query: 27 DVVIIDEAAQALEAECLIP--LLLAK---KKFILVGDHKQLPPT 65 D+V++DEA+ + L+ L+ A + VGD QLP Sbjct: 447 DLVVVDEASM---LDLLLANKLVKAVPPGAHLLFVGDVDQLPSV 487 >tr:Q7Q395_ANOGA ENSANGP00000010202. Anopheles gambiae str. PEST. Length = 668 Score = 33.6 bits (76), Expect = 0.29 Identities = 24/113 (21%), Positives = 35/113 (30%), Gaps = 29/113 (25%) Query: 29 VIIDEAAQALEA---ECLIPLLLAKKK---------FILVGDHKQLPPTI---------- 66 +IIDE + EA E + + +K IL GD QLPP Sbjct: 302 LIIDEISMI-EADFFEKIEAVARYVRKNDKPFGGIQLILCGDFFQLPPVGRLPDRSRPGQ 360 Query: 67 KSKKAAAKAGLEESLFERLVELGV----SVVRLNVQYRMHPE--ICRLPSNLF 113 S+ A F + + L + +R + I L S Sbjct: 361 YSQDAQQDDESGRVRFCFESKAWRECIQASYELTIVHRQRDQEFISILNSIRI 413 >tr:Q57CC0_BRUAB Hypothetical protein. Brucella abortus biovar 1 str. 9-941. Length = 373 Score = 33.6 bits (76), Expect = 0.29 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Query: 29 VIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 +++DE + EA L+ +++GD QLPP Sbjct: 116 IVVDECSMVDEALG-RDLMSFGTPILVLGDPGQLPPI 151 >tr:Q836J8_ENTFA Exonuclease RexA. Enterococcus faecalis (Streptococcus faecalis). Length = 1264 Score = 33.6 bits (76), Expect = 0.29 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 10/102 (9%) Query: 25 KFDVVIIDEAAQALEA-ECLI-----PLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLE 78 KFD V++DE + E ++ PL + +VGD KQ +I S + A Sbjct: 403 KFDEVLVDEYQDINQLQESILYWLRRPLST-EGNLFMVGDVKQ---SIYSFRLADPTLFI 458 Query: 79 ESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLV 120 E + + L +R ++ + +F + Sbjct: 459 EKYNQYGQGKEGKRIILAENFRSRKDVLDFTNLVFSQLMDER 500 >tr:Q8FZT4_BRUSU Hypothetical protein. Brucella suis. Length = 373 Score = 33.6 bits (76), Expect = 0.29 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Query: 29 VIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 +++DE + EA L+ +++GD QLPP Sbjct: 116 IVVDECSMVDEALG-RDLMSFGTPILVLGDPGQLPPI 151 >tr:Q8YI26_BRUME EXODEOXYRIBONUCLEASE V ALPHA CHAIN (EC 3.1.11.5). Brucella melitensis. Length = 373 Score = 33.6 bits (76), Expect = 0.29 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Query: 29 VIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 +++DE + EA L+ +++GD QLPP Sbjct: 116 IVVDECSMVDEALG-RDLMSFGTPILVLGDPGQLPPI 151 >tr:O10467_9CLOS 347-kDa polyprotein. Citrus tristeza virus. Length = 3115 Score = 33.6 bits (76), Expect = 0.29 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 2778 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 2829 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 2830 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 2864 >tr:Q17645_CAEEL Hypothetical protein pgp-5. Caenorhabditis elegans. Length = 1283 Score = 33.6 bits (76), Expect = 0.29 Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 29/128 (22%) Query: 30 IIDEAAQ--------ALEAECLIPLLLAKKKFIL-------VGDHKQLPPTIKSKKAAAK 74 I+ EA Q + A L + A K ++ VGDHKQL + Sbjct: 581 IVQEALQKASIGRTTIVVAHRLSTIRNANKIIVMEKGEIVEVGDHKQLIAMNGVYNNLVQ 640 Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSA 134 L + +E++ E V R + PSN + + +Y Sbjct: 641 TQLMSTNYEKMNENEERVTRQSSH-------SDFPSNEI-------SHQKIDQEDDYVKK 686 Query: 135 NPGFFPTP 142 Sbjct: 687 LIAEIKEE 694 >tr:Q6NY68_BRARE Serine carboxypeptidase 1. Brachydanio rerio (Zebrafish) (Danio rerio). Length = 444 Score = 33.6 bits (76), Expect = 0.29 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 16/77 (20%) Query: 143 QFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFV----------VEIVEYLLRSGVPPEDI 192 Q + L P+ ++ E FV VE+V+ LL +GV Sbjct: 299 QSLSELMNGPIRQKLGVIPKNVTWGGQAEDVFVSMAGDFMKPVVEVVDQLLAAGVN---- 354 Query: 193 GVITPYNGQVELIRNIL 209 +T YNGQ++LI + + Sbjct: 355 --VTVYNGQLDLIVDTM 369 >tr:Q9EYR3_LEGPN TraA-like protein. Legionella pneumophila. Length = 883 Score = 33.6 bits (76), Expect = 0.30 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 8/49 (16%) Query: 22 EKFKFDVVIIDEA-----AQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 ++ FD + DEA Q C+ A K ILVGD QL P Sbjct: 419 QQRCFDYL-FDEAGIGGFCQ--HGTCIRKAKKAGSKVILVGDPDQLKPI 464 >tr:Q65TK5_MANSM RecD protein. Mannheimia succiniciproducens (strain MBEL55E). Length = 643 Score = 33.6 bits (76), Expect = 0.31 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 15/91 (16%) Query: 7 MTCTGAASKRKSLALEKFKF--------DVVIIDEAAQA---LEAECLIPLLLAKKKFIL 55 T A + + L FKF DV++IDEA+ L + L L + IL Sbjct: 254 CIPTEAMTIHRLLGGRSFKFNAQNPLPLDVLVIDEASMIDLALMSNLLQALPSH-ARLIL 312 Query: 56 VGDHKQLPPTIKSKKAAAKAGLEESLFERLV 86 +GD QL + A L + L + Sbjct: 313 LGDKDQLASV---EAGAILGELGQFLEQGYS 340 >tr:Q5JVB0_HUMAN F-box only protein, helicase, 18. Homo sapiens (Human). Length = 1094 Score = 33.6 bits (76), Expect = 0.31 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%) Query: 25 KFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 FD + +DEA A I L K I VGD Q Sbjct: 691 SFDAIFVDEAQDCTPAIMNIVLSQPCGK-IFVGDPHQ 726 >tr:Q9WJD4_9VIRU Nonstructural polyprotein. Venezuelan equine encephalitis virus. Length = 2451 Score = 33.6 bits (76), Expect = 0.32 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%) Query: 31 IDEA--AQALEAECLIPLLLAKKKFILVGDHKQ 61 IDEA A LI ++ KK +L GD KQ Sbjct: 786 IDEAFACHAGTLRALIAIVK-PKKAVLCGDPKQ 817 >tr:Q5JVB1_HUMAN F-box only protein, helicase, 18. Homo sapiens (Human). Length = 1043 Score = 33.6 bits (76), Expect = 0.33 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%) Query: 25 KFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 FD + +DEA A I L K I VGD Q Sbjct: 640 SFDAIFVDEAQDCTPAIMNIVLSQPCGK-IFVGDPHQ 675 >tr:Q9KPP7_VIBCH Exodeoxyribonuclease V, 67 kDa subunit (Exonuclease V RecD subunit). Vibrio cholerae. Length = 706 Score = 33.6 bits (76), Expect = 0.33 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%) Query: 22 EKFKFDVVIIDEAAQALEAE---CLIPLLLAKKKFILVGDHKQLPPT 65 D++++DEA+ + L + IL+GD QL Sbjct: 344 NPLHLDLLVVDEASMVDLPLMVKLVEALPKH-ARLILLGDKDQLASV 389 >tr:Q9DJM6_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 262 Score = 33.6 bits (76), Expect = 0.33 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q9DJR6_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 33.6 bits (76), Expect = 0.34 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q8RFZ6_FUSNN Transposase. Fusobacterium nucleatum (subsp. nucleatum). Length = 493 Score = 33.6 bits (76), Expect = 0.34 Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 4/89 (4%) Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 F L R + +S F Q V + +E + EA Sbjct: 194 FSYLKKLKIQKIYG-RGKRNSKEQLFLEKAQSYVEKFNKYTNYLEILGERNSFSKTDKEA 252 Query: 173 EFVVEIVEYLLRSGVPPE---DIGVITPY 198 F+ +Y+ + P IGVI+ Y Sbjct: 253 TFMRMKEDYMRNGQLKPGYNLQIGVISEY 281 >tr:Q8A091_BACTN Putative helicase. Bacteroides thetaiotaomicron. Length = 665 Score = 33.6 bits (76), Expect = 0.34 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 18/93 (19%) Query: 25 KFDVVIIDEAAQALEAECLIPLLL-------------AKKKFILVGDHKQLPPTIKSKKA 71 + ++VIIDE + A+ + + K+ +LVGD QL P +K+ + Sbjct: 108 QIELVIIDEISMVR-ADLIDAIDRILRVYSHNLREPFGGKQLLLVGDVFQLEPVVKNDER 166 Query: 72 AAKAGLEESLFERLVEL----GVSVVRLNVQYR 100 + + + + + L YR Sbjct: 167 EILNRAYPTPYFFSARVFSQIDLVSIELQKVYR 199 >tr:Q9DJP7_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 343 Score = 33.6 bits (76), Expect = 0.34 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 40 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 91 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 92 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 126 >tr:Q66K33_HUMAN FBXO18 protein (Fragment). Homo sapiens (Human). Length = 978 Score = 33.3 bits (75), Expect = 0.35 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%) Query: 25 KFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQ 61 FD + +DEA A I L K I VGD Q Sbjct: 575 SFDAIFVDEAQDCTPAIMNIVLSQPCGK-IFVGDPHQ 610 >tr:Q8RIQ9_FUSNN Transposase. Fusobacterium nucleatum (subsp. nucleatum). Length = 493 Score = 33.3 bits (75), Expect = 0.35 Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 4/89 (4%) Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 F L R + S F Q V + +E + EA Sbjct: 194 FSYLKKLKIQKIYG-RGKRKSKEQLFLEKAQSYVEKFNKYTNYLEILGERNSFSKTDKEA 252 Query: 173 EFVVEIVEYLLRSGVPPE---DIGVITPY 198 F+ +Y+ + P IGVI+ Y Sbjct: 253 TFMRMKEDYMRNGQLKPGYNLQIGVISEY 281 >tr:Q80ZG2_RAT Inositol 1,4,5-trisphosphate 3-kinase C. Rattus norvegicus (Rat). Length = 678 Score = 33.3 bits (75), Expect = 0.35 Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 26/184 (14%) Query: 54 ILVGDHKQLPPTIKSKK--AAAKAGLEESLFERLVELGVSVVRLNVQY------------ 99 +L+GD L P + + + + L + + Sbjct: 438 LLMGDP--LRPFVPTYYGMVQRDGQAFNQMEDLLADFEGPSIMDCKMGSRTYLEEELVKA 495 Query: 100 RMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEE 159 R P+ P YE VD E+ Q+ LS G E Sbjct: 496 RERPK----PRKDMYEKMVAVD-PGAPTPEEHAQGAVTKPRYMQWRETLSSTSTLGFRIE 550 Query: 160 EPE---GYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK 216 + G N + + + ++ + L D+G++ Y ++E +R+ L + K Sbjct: 551 GIKKADGTCNTNFKKTQALEQVTKVL--EDFVNGDVGILRKYVARLEDLRDTLENSPFFK 608 Query: 217 PVEV 220 EV Sbjct: 609 THEV 612 >tr:Q9WID7_9CLOS P349 protein. Citrus tristeza virus. Length = 3115 Score = 33.3 bits (75), Expect = 0.35 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 12/91 (13%) Query: 27 DVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 D++ +DE A + ++ + K + GD +Q+ + L SL Sbjct: 2782 DLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-------HYIHRNDLGVSLLHD 2833 Query: 85 LVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 + R+ V YR +IC S + Sbjct: 2834 IDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 2864 >tr:Q8R6I3_FUSNN Transposase. Fusobacterium nucleatum (subsp. nucleatum). Length = 493 Score = 33.3 bits (75), Expect = 0.36 Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 4/89 (4%) Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 F L R + +S F Q V + +E + EA Sbjct: 194 FSYLKKLKIQKIYG-RGKRNSKEQLFLEKAQSYVEKFNKYTNYLEILGERNSFSKTDKEA 252 Query: 173 EFVVEIVEYLLRSGVPPE---DIGVITPY 198 F+ +Y+ + P IGVI+ Y Sbjct: 253 TFMRMKEDYMRNGQLKPGYNLQIGVISEY 281 >tr:Q6ANK1_DESPS Related to exodeoxyribonuclease V, beta chain. Desulfotalea psychrophila. Length = 1191 Score = 33.3 bits (75), Expect = 0.36 Identities = 23/150 (15%), Positives = 41/150 (27%), Gaps = 15/150 (10%) Query: 22 EKFKFDVVIIDE-----AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAG 76 + ++D+ +IDE Q L L+GD KQ K + A + Sbjct: 382 LQARYDLALIDEFQDTDNEQWHIFSKLFASKKHS--LYLIGDPKQ--AIYKFRGADIYS- 436 Query: 77 LEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANP 136 + L+ YR H ++ R + LF + + Sbjct: 437 -----YFTARTKTDYFYSLDTNYRSHRDLVRGVNGLFAGSDDPFLFKEEGLLYYPVKSGK 491 Query: 137 GFFPTPQFIVPLSFVDNSGVEEEEPEGYSY 166 V ++ EE + Sbjct: 492 SRDVYLVDAEKKPLVPFVYLQLEENDDDKK 521 >tr:Q9DJM9_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 33.3 bits (75), Expect = 0.36 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q67PV5_SYMTH Putative DNA helicase. Symbiobacterium thermophilum. Length = 693 Score = 33.3 bits (75), Expect = 0.36 Identities = 42/233 (18%), Positives = 80/233 (34%), Gaps = 56/233 (24%) Query: 23 KFKFDVVIIDEAAQALEA--ECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 ++D V+IDEA A L+ L +++ + D Q +I + + + Sbjct: 426 GQRYDAVVIDEAQDLTPAMLSLLVELAESERGIYVTADPSQ---SIYFRGFSWQ------ 476 Query: 81 LFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFP 140 L + + L YR EI + R + + G Sbjct: 477 LVHQRLRFRGRAKLLRRNYRSTREIAEVA------------------RAFLEKSGAGDPE 518 Query: 141 TPQFIVPLS-FVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSG------VPPEDIG 193 + Q P++ E E E ++ A+F+ ++ Y+ + VP +G Sbjct: 519 SLQTDSPVTGPAPVLATYESEAEQ--WEQA--ADFIRQMTRYVRMNHGAAAVLVPSSSVG 574 Query: 194 VITPYNGQVE--LIRNILNSRCSL--------KPVEVSTVDSFQGREKDIIIL 236 Q E L R L +R V+V T+ + +G E ++++ Sbjct: 575 ------QQAEEGLTRAGLKARFMRGSQLDLKTDAVKVLTLQAAKGLEFPVVVI 621 >tr:Q9DJM5_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 33.3 bits (75), Expect = 0.36 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAIVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q8RDZ9_FUSNN Transposase. Fusobacterium nucleatum (subsp. nucleatum). Length = 493 Score = 33.3 bits (75), Expect = 0.37 Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 4/89 (4%) Query: 113 FYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEA 172 F L R + +S F Q V + +E + EA Sbjct: 194 FSYLKKLKIQKIYG-RGKRNSKEQLFLEKAQSYVEKFNKYTNYLEILGERNSFSKTDKEA 252 Query: 173 EFVVEIVEYLLRSGVPPE---DIGVITPY 198 F+ +Y+ + P IGVI+ Y Sbjct: 253 TFMRMKEDYMRNGQLKPGYNLQIGVISEY 281 >tr:Q9DJM3_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 33.3 bits (75), Expect = 0.38 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAIVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q9DJM4_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 33.3 bits (75), Expect = 0.38 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAIVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q9DJQ5_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 368 Score = 33.3 bits (75), Expect = 0.38 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q5DTV1_MOUSE MKIAA1789 protein (Fragment). Mus musculus (Mouse). Length = 605 Score = 33.3 bits (75), Expect = 0.38 Identities = 33/156 (21%), Positives = 47/156 (30%), Gaps = 27/156 (17%) Query: 99 YRMHPEICR-----LPSNLFYEGN-GLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVD 152 YRM +C S + + + + N + Sbjct: 131 YRMRTYVCHICSITFTSLHMFRSHMQGTEHQIKESHVINQVKNSKKMQESCQAECGDDIK 190 Query: 153 NSGVEEEEPEGYSYQ---NPGEA------EFVVEIVEY-LLRSGVPPEDI----GVITPY 198 E EP+G+ + N EA E V + +L +P E+ G PY Sbjct: 191 MKKSRELEPKGHFREMEDNYMEAQAHEYREMVDSRPRHKMLEQTLPLENFWAHPG---PY 247 Query: 199 NGQVELIRNILNSRCSLKPVEVSTVDSFQGREKDII 234 N L L P E T DSFQ +D I Sbjct: 248 NDSRAL-EEQLPHNL---PAESKTYDSFQDELEDYI 279 >tr:Q88CB7_PSEPK ATP-dependent DNA helicase Rep. Pseudomonas putida (strain KT2440). Length = 669 Score = 33.3 bits (75), Expect = 0.39 Identities = 50/216 (23%), Positives = 76/216 (35%), Gaps = 47/216 (21%) Query: 23 KFKFDVVIIDE-----AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGL 77 + + +++DE A+Q L + LI + +F +VGD Q +I + + A L Sbjct: 205 QNRVRYLLVDEYQDTNASQYLLVKMLIGMR---NQFTVVGDDDQ---SIYAWRGARPENL 258 Query: 78 EESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPG 137 L E L +V L YR I R + L + Sbjct: 259 ML-LKEDYPSL--KIVMLEQNYRSTSRILRCANVLI----------------ANNPHAFE 299 Query: 138 FFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFV-VEIVEYLLRSGVPPEDIGVIT 196 + V EE EAE V +EI+ LR+ P D ++ Sbjct: 300 KQLWSEMGVGDEIRVIRCKNEE----------AEAERVAMEILTLHLRTNRPYSDFAIL- 348 Query: 197 PYNG--QVELIRNILNSRCSLKPVEVSTVDSFQGRE 230 Y G Q +LI L P +S +SF GR+ Sbjct: 349 -YRGNYQAKLIELKLQHHQV--PYRLSGGNSFFGRQ 381 >tr:Q5HV15_CAMJR ATP-dependent DNA helicase, putative. Campylobacter jejuni (strain RM1221). Length = 676 Score = 33.3 bits (75), Expect = 0.39 Identities = 41/206 (19%), Positives = 61/206 (29%), Gaps = 51/206 (24%) Query: 18 SLALEKFKFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKA 75 L EK++FD +++DE L++ + K VGD+ Q A Sbjct: 199 LLKEEKYEFDEILVDEYQDTNTLQSSLIEAF--HSKSLFCVGDYDQ----SIYAFNGADI 252 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 + +R + LN YR I L + + L E Sbjct: 253 NIIGGFKDRF--KDAKIFSLNKNYRSSRSILALANKVILNNERL-------YPKELIVTR 303 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 F P + D YQN + +L SGV E+I VI Sbjct: 304 NDEFKAPSLLTFEELFD------------QYQNIA---------KMILTSGVSLEEIAVI 342 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVS 221 + S VEV+ Sbjct: 343 -------------FRNNSSADGVEVA 355 >tr:Q88ZB6_LACPL DNA helicase (Putative). Lactobacillus plantarum. Length = 769 Score = 33.3 bits (75), Expect = 0.39 Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 3 KVVAMTCTGAASKRKSLAL---EKFKFDVVIIDEAAQALEAECLI---PLLLAKKKFILV 56 +A+ + + + + + +DE A+ L LA KF L+ Sbjct: 503 HRIALVDCAPLLLLRDVLTGSGQNRRMQYIFVDEMQDYSLAQLLYIKHAFPLA--KFTLL 560 Query: 57 GDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEG 116 GD +Q K L E L + +++ LN YR +I L +G Sbjct: 561 GDSEQ----ALFKGIELPQQLLERLKDAFNVRRANLITLNKSYRSTEQITNFAKALLPDG 616 Query: 117 N 117 + Sbjct: 617 D 617 >tr:Q9DJM1_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 33.3 bits (75), Expect = 0.39 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAIVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q9DJM0_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 33.3 bits (75), Expect = 0.40 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAIVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q97LF8_CLOAB Superfamily I DNA and RNA helicase. Clostridium acetobutylicum. Length = 721 Score = 33.3 bits (75), Expect = 0.40 Identities = 30/178 (16%), Positives = 55/178 (30%), Gaps = 28/178 (15%) Query: 16 RKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFI---LVGDHKQ-LPPTIKSKKA 71 R + + V+IDEA + + + ++ + +VGD Q L P K Sbjct: 497 RLDGVKLEREVKHVVIDEAQDYSKLQFI--VIKKLTNCLGMTIVGDSNQRLIP-----KF 549 Query: 72 AAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPS---------NLFYEGNGLVDI 122 K + E + ++ + +L+ YR EI + + G + + Sbjct: 550 DEKIAM-ERMDTIFEDMDFEMFKLDKSYRSTKEIMEYANRFLNDTSIIPMVRSGEKVQSL 608 Query: 123 SS------VARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEF 174 S V R ++ + D E + Y N E E Sbjct: 609 SISSEDEFVDRVTYAIDDMKKEGIETIGVICENMHDTKYFGEL-LKSKKYINIIEKEN 665 >tr:Q9DJM8_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 33.3 bits (75), Expect = 0.40 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q62IT6_BURMA Exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5). Burkholderia mallei (Pseudomonas mallei). Length = 898 Score = 33.3 bits (75), Expect = 0.40 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 26 FDVVIIDEAAQA--LEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFE 83 +D+V++DEA+ A L+ L + +L+GD QL + A A L Sbjct: 279 YDLVVVDEASMIDVALAAHLLDALAPNARLVLLGDKDQLAAV---EAGAVFAELSARPAF 335 Query: 84 RLVELGVSVVRLNV 97 L V Sbjct: 336 SPATCATIARTLGV 349 >tr:Q9DJN6_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 33.3 bits (75), Expect = 0.40 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAIVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q9PPE2_CAMJE Putative ATP-dependent DNA helicase. Campylobacter jejuni. Length = 676 Score = 33.3 bits (75), Expect = 0.41 Identities = 41/206 (19%), Positives = 61/206 (29%), Gaps = 51/206 (24%) Query: 18 SLALEKFKFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKA 75 L EK++FD +++DE L++ + K VGD+ Q A Sbjct: 199 LLKEEKYEFDEILVDEYQDTNTLQSSLIEAF--HSKSLFCVGDYDQ----SIYAFNGADI 252 Query: 76 GLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSAN 135 + +R + LN YR I L + + L E Sbjct: 253 NIIGGFKDRF--KDAKIFSLNKNYRSSRSILALANKVILNNERL-------YPKELIVTR 303 Query: 136 PGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPEDIGVI 195 F P + D YQN + +L SGV E+I VI Sbjct: 304 NDEFKAPSLLTFEELFD------------QYQNIA---------KMILTSGVSLEEIAVI 342 Query: 196 TPYNGQVELIRNILNSRCSLKPVEVS 221 + S VEV+ Sbjct: 343 -------------FRNNSSADGVEVA 355 >tr:Q9DJM7_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 33.3 bits (75), Expect = 0.41 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q98KL4_RHILO Mll1421 protein. Rhizobium loti (Mesorhizobium loti). Length = 375 Score = 33.3 bits (75), Expect = 0.42 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 28 VVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPT 65 +V+IDE + E L+ +++GD QLPP Sbjct: 115 LVVIDECSMVDEQLG-RDLMSFGTPILVLGDPGQLPPI 151 >tr:Q8XQF1_RALSO PROBABLE ATP-DEPENDENT DNA HELICASE II PROTEIN (EC 3.6.1.-). Ralstonia solanacearum (Pseudomonas solanacearum). Length = 710 Score = 33.3 bits (75), Expect = 0.42 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 7/88 (7%) Query: 25 KFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 +FD +++DE L++ L L + +VGD Q + A + L+ F Sbjct: 252 RFDHILVDEYQDTNRLQSSILRALRPDGRGLTVVGDDAQ--SIYAFRAATVRNILD---F 306 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPS 110 R V L YR I + Sbjct: 307 PRHFTRPAHTVLLERNYRSTQPILEASN 334 >tr:Q9DJN3_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 33.3 bits (75), Expect = 0.42 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAIVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q9DJN4_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 370 Score = 33.3 bits (75), Expect = 0.42 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 67 RLKTDLLFVDECFMVH-AGAIGAIVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 118 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 119 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 153 >tr:Q82D59_STRAW Putative ATP-dependent helicase. Streptomyces avermitilis. Length = 836 Score = 33.3 bits (75), Expect = 0.43 Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 10/96 (10%) Query: 19 LALEKFKFDVVIIDEAAQALEAECLIPLLLAKKK--FILVGDHKQLPPTIKSKKAAAKAG 76 LA E+ ++ VI+DEA Q L + + + +VGD Q A Sbjct: 610 LAQERTEYAHVIVDEA-QDLTPMQWRMVGRRGRHATWTVVGDPAQ----SSWSDPDEAAE 664 Query: 77 LEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 E L L V YR EI L + + Sbjct: 665 AR---DEALGSRPRRRFTLTVNYRNPAEIAELAAKV 697 >tr:Q5KKJ1_CRYNE DNA repair and recombination protein pif1, mitochondrial, putative. Cryptococcus neoformans (Filobasidiella neoformans). Length = 669 Score = 33.3 bits (75), Expect = 0.43 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 11/59 (18%) Query: 28 VVIIDEAAQALEA-----ECLIPLLLAKKK------FILVGDHKQLPPTIKSKKAAAKA 75 V+IIDE + A L L+ K I+ GD QLPP K+ A Sbjct: 302 VLIIDEVSMVDGAMFDKFCKLGQLIRKNSKPWGGIQIIVTGDFFQLPPVTKNGGMPKFA 360 >tr:Q55VP9_CRYNE Hypothetical protein. Cryptococcus neoformans var. neoformans B-3501A. Length = 669 Score = 33.3 bits (75), Expect = 0.43 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 11/59 (18%) Query: 28 VVIIDEAAQALEA-----ECLIPLLLAKKK------FILVGDHKQLPPTIKSKKAAAKA 75 V+IIDE + A L L+ K I+ GD QLPP K+ A Sbjct: 302 VLIIDEVSMVDGAMFDKFCKLGQLIRKNSKPWGGIQIIVTGDFFQLPPVTKNGGMPKFA 360 >tr:Q83Q24_SHIFL Putative DEOR-type transcriptional regulator of aga operon. Shigella flexneri. Length = 274 Score = 33.3 bits (75), Expect = 0.43 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 8/61 (13%) Query: 2 AKVVAMTCTGA---ASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGD 58 +++ +T + +S K + + + D++I+DE + A+ L L A + ILVGD Sbjct: 215 ERIIVVTDSSKFNRSSLHKIIDTQ--RIDMIIVDEG---IPADSLEGLRKAGVEVILVGD 269 Query: 59 H 59 H Sbjct: 270 H 270 >tr:Q9DJN0_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 33.3 bits (75), Expect = 0.43 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 12/91 (13%) Query: 27 DVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 D++ +DE A + ++ + K + GD +Q+ I SL Sbjct: 72 DLLFVDECFMVH-AGAIGAVVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------SLLHD 123 Query: 85 LVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 + R+ V YR +IC S + Sbjct: 124 MDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q7N8T4_PHOLL Exodeoxyribonuclease V alpha chain. Photorhabdus luminescens (subsp. laumondii). Length = 618 Score = 33.3 bits (75), Expect = 0.44 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 10/75 (13%) Query: 22 EKFKFDVVIIDEAAQALEA--ECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEE 79 DV+++DEA+ LI L K K +L+GD QL A+ +AG Sbjct: 265 NPLNLDVLVVDEASMVDLPMMARLIDALPPKAKIVLLGDRDQL--------ASVEAGAVL 316 Query: 80 SLFERLVELGVSVVR 94 R ELG SV R Sbjct: 317 GDICRFAELGYSVTR 331 >tr:Q9DJL8_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 366 Score = 33.3 bits (75), Expect = 0.44 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 63 RLKTDLLFVDECFMVH-AGAIGAIVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 114 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 115 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 149 >tr:Q88DZ6_PSEPK Exodeoxyribonuclease V, alpha subunit. Pseudomonas putida (strain KT2440). Length = 691 Score = 33.3 bits (75), Expect = 0.44 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 14/78 (17%) Query: 1 EAKVVAMTCTGAASKRKSLALEKFKF----------DVVIIDEAAQA---LEAECLIPLL 47 E + T + F DV+++DEA+ + A L L Sbjct: 280 EVRGQIPTEVSTVHRLLGSRPGSRHFRHHAGNPLPLDVLVVDEASMIDLEMMANLLDALP 339 Query: 48 LAKKKFILVGDHKQLPPT 65 + + +L+GD QL Sbjct: 340 -PRARLVLLGDKDQLASV 356 >tr:Q9DJL9_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 33.3 bits (75), Expect = 0.45 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAIVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q9DJN8_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 367 Score = 33.3 bits (75), Expect = 0.45 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAIVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 120 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 154 >tr:Q8UDU3_AGRT5 Exodeoxyribonuclease V. Agrobacterium tumefaciens (strain C58 / ATCC 33970). Length = 375 Score = 33.3 bits (75), Expect = 0.45 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 3/81 (3%) Query: 28 VVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKA-GLEESLFERLV 86 ++IIDE + E L+ +++GD QLPP + S R Sbjct: 115 LIIIDECSMVDEQLG-KDLMSFGTPILVLGDPGQLPPVSGGGFFTEQEPDFLLSEIHRQA 173 Query: 87 ELGVSVVRLNVQYRMHPEICR 107 ++ L + R EI R Sbjct: 174 -KDNPIIHLAMDVREGREIMR 193 >tr:Q9DJM2_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 370 Score = 33.3 bits (75), Expect = 0.45 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 67 RLKTDLLFVDECFMVH-AGAIGAIVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 118 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLF 113 L + R+ V YR +IC S + Sbjct: 119 LLHDIDAFIEPQHRIYGEVSYRCPWDICEWLSKFY 153 >tr:Q9DJS5_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 32.9 bits (74), Expect = 0.46 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 12/109 (11%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAIVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLFYEGNGLVDISSVAR 127 L + R+ V YR +IC S + +I+SV + Sbjct: 120 LLHDIDSFIQPEHRVYGEVSYRCPWDICEWLSKSYPRHVATANIASVGK 168 >tr:Q9DJS6_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 32.9 bits (74), Expect = 0.46 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 12/109 (11%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAIVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLFYEGNGLVDISSVAR 127 L + R+ V YR +IC S + +I+SV + Sbjct: 120 LLHDIDSFIQPEHRVYGEVSYRCPWDICEWLSKSYPRHVATANIASVGK 168 >tr:Q7P3P2_FUSNV Transposase. Fusobacterium nucleatum subsp. vincentii ATCC 49256. Length = 95 Score = 32.9 bits (74), Expect = 0.47 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 3/70 (4%) Query: 132 DSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPE- 190 N F ++ + +E + EA F+ +Y+ + P Sbjct: 7 KVRNNYFLKKHNPMLKELNKYTNYLEILGERNSFSKTDKEATFMRMKEDYMRNGQLKPGY 66 Query: 191 --DIGVITPY 198 IGVI+ Y Sbjct: 67 NLQIGVISEY 76 >tr:Q9DJL4_9CLOS Polyprotein (Fragment). Citrus tristeza virus. Length = 371 Score = 32.9 bits (74), Expect = 0.47 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 12/109 (11%) Query: 23 KFKFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEES 80 + K D++ +DE A + ++ + K + GD +Q+ I S Sbjct: 68 RLKTDLLFVDECFMVH-AGAIGAIVEFTSCKAVVFFGDSRQI-HYIHRNDFGV------S 119 Query: 81 LFERLVELGVSVVRL--NVQYRMHPEICRLPSNLFYEGNGLVDISSVAR 127 L + R+ V YR +IC S + +I+SV + Sbjct: 120 LLHDIDSFIQPEHRVYGEVSYRCPWDICEWLSKSYPRHVATANIASVGK 168 >tr:Q6SZN3_RHOFA Putative ATP-dependent DNA helicase protein (Fragment). Rhodococcus fascians. Length = 123 Score = 32.9 bits (74), Expect = 0.48 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 8/94 (8%) Query: 28 VVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERL 85 V++DE A + E L L+ + +F VGD Q + A + + Sbjct: 17 HVLVDEYQDTNATQYEVLKALVGERARFTAVGDDDQ--SIYGWRGATLDNLRKLPIDFPQ 74 Query: 86 VELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGL 119 + V++L YR I R +N+ L Sbjct: 75 L----KVIKLEQNYRSTSAILRAANNVIQPNPKL 104 >tr:Q8V436_9CORO Spike structural protein. Bovine coronavirus. Length = 1363 Score = 32.9 bits (74), Expect = 0.49 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF LNVQYR++ Sbjct: 957 KVLPPLLSENQISGYTLAATSASLFPPWSAAAGVPFYLNVQYRIN 1001 >tr:Q9QAR5_9CORO Spike glycoprotein. Bovine coronavirus. Length = 1363 Score = 32.9 bits (74), Expect = 0.49 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF LNVQYR++ Sbjct: 957 KVLPPLLSENQISGYTLAATSASLFPPWSAAAGVPFYLNVQYRIN 1001 >tr:Q8NW86_STAAW MW1569 protein. Staphylococcus aureus (strain MW2). Length = 825 Score = 32.9 bits (74), Expect = 0.50 Identities = 47/270 (17%), Positives = 95/270 (35%), Gaps = 48/270 (17%) Query: 14 SKRKSLALEKFKFDVVIIDEAAQA-----LEAECLIPLLLAKKKFILVGDHKQLPPT--- 65 +K + + + ++IIDE + + +PL + I VGD QLP Sbjct: 431 TKPEDILENEINARLIIIDEMSMVDTWLFHQFLSAVPL---DAQLIFVGDEDQLPSVGPG 487 Query: 66 -IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHP----EICRLPSNLFYEGNGLV 120 + +KA +L E + + +RM +I + + + Sbjct: 488 QVFKDLIESKAIPRVNLTEVY-RQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQAN 546 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG-----EAEF- 174 I +V ++ + N G+ ++ + N+G++ NP E EF Sbjct: 547 QIPTVVEKVVTSAVNKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFG 606 Query: 175 ---------VVEIVEYLLRSGVPPEDIGVITP--YNGQVELIRNILNSRCSLKPVE---- 219 V+++V + DIGVI + + L +++L + Sbjct: 607 DVVFRKGDKVLQLVNRPNDNIFN-GDIGVIVGIFWAKENALNKDVLVVDFEGNEITFTKQ 665 Query: 220 ---------VSTVDSFQGREKDIIILSLVR 240 +++ QG E I+I+ +V+ Sbjct: 666 DMMELTHAYCTSIHKSQGSEFPIVIMPIVK 695 >tr:Q5HFE3_STAAC Helicase, putative, RecD/TraA family. Staphylococcus aureus (strain COL). Length = 825 Score = 32.9 bits (74), Expect = 0.50 Identities = 47/270 (17%), Positives = 95/270 (35%), Gaps = 48/270 (17%) Query: 14 SKRKSLALEKFKFDVVIIDEAAQA-----LEAECLIPLLLAKKKFILVGDHKQLPPT--- 65 +K + + + ++IIDE + + +PL + I VGD QLP Sbjct: 431 TKPEDILENEINARLIIIDEMSMVDTWLFHQFLSAVPL---DAQLIFVGDEDQLPSVGPG 487 Query: 66 -IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHP----EICRLPSNLFYEGNGLV 120 + +KA +L E + + +RM +I + + + Sbjct: 488 QVFKDLIESKAIPRVNLTEVY-RQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQAN 546 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG-----EAEF- 174 I +V ++ + N G+ ++ + N+G++ NP E EF Sbjct: 547 QIPTVVEKVVTSAVNKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFG 606 Query: 175 ---------VVEIVEYLLRSGVPPEDIGVITP--YNGQVELIRNILNSRCSLKPVE---- 219 V+++V + DIGVI + + L +++L + Sbjct: 607 DVVFRKGDKVLQLVNRPNDNIFN-GDIGVIVGIFWAKENALNKDVLVVDFEGNEITFTKQ 665 Query: 220 ---------VSTVDSFQGREKDIIILSLVR 240 +++ QG E I+I+ +V+ Sbjct: 666 DMMELTHAYCTSIHKSQGSEFPIVIMPIVK 695 >tr:Q91A26_9CORO Spike structural protein. Bovine coronavirus. Length = 1363 Score = 32.9 bits (74), Expect = 0.50 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF LNVQYR++ Sbjct: 957 KVLPPLLSENQISGYTLAATSASLFPPWSAAAGVPFYLNVQYRIN 1001 >tr:Q7A597_STAAN SA1447 protein. Staphylococcus aureus (strain N315). Length = 825 Score = 32.9 bits (74), Expect = 0.50 Identities = 47/270 (17%), Positives = 95/270 (35%), Gaps = 48/270 (17%) Query: 14 SKRKSLALEKFKFDVVIIDEAAQA-----LEAECLIPLLLAKKKFILVGDHKQLPPT--- 65 +K + + + ++IIDE + + +PL + I VGD QLP Sbjct: 431 TKPEDILENEINARLIIIDEMSMVDTWLFHQFLSAVPL---DAQLIFVGDEDQLPSVGPG 487 Query: 66 -IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHP----EICRLPSNLFYEGNGLV 120 + +KA +L E + + +RM +I + + + Sbjct: 488 QVFKDLIESKAIPRVNLTEVY-RQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQAN 546 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG-----EAEF- 174 I +V ++ + N G+ ++ + N+G++ NP E EF Sbjct: 547 QIPTVVEKVVTSAVNKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFG 606 Query: 175 ---------VVEIVEYLLRSGVPPEDIGVITP--YNGQVELIRNILNSRCSLKPVE---- 219 V+++V + DIGVI + + L +++L + Sbjct: 607 DVVFRKGDKVLQLVNRPNDNIFN-GDIGVIVGIFWAKENALNKDVLVVDFEGNEITFTKQ 665 Query: 220 ---------VSTVDSFQGREKDIIILSLVR 240 +++ QG E I+I+ +V+ Sbjct: 666 DMMELTHAYCTSIHKSQGSEFPIVIMPIVK 695 >tr:Q99TN0_STAAM Similar to deoxyribonuclease. Staphylococcus aureus (strain Mu50 / ATCC 700699). Length = 825 Score = 32.9 bits (74), Expect = 0.50 Identities = 47/270 (17%), Positives = 95/270 (35%), Gaps = 48/270 (17%) Query: 14 SKRKSLALEKFKFDVVIIDEAAQA-----LEAECLIPLLLAKKKFILVGDHKQLPPT--- 65 +K + + + ++IIDE + + +PL + I VGD QLP Sbjct: 431 TKPEDILENEINARLIIIDEMSMVDTWLFHQFLSAVPL---DAQLIFVGDEDQLPSVGPG 487 Query: 66 -IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHP----EICRLPSNLFYEGNGLV 120 + +KA +L E + + +RM +I + + + Sbjct: 488 QVFKDLIESKAIPRVNLTEVY-RQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQAN 546 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG-----EAEF- 174 I +V ++ + N G+ ++ + N+G++ NP E EF Sbjct: 547 QIPTVVEKVVTSAVNKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFG 606 Query: 175 ---------VVEIVEYLLRSGVPPEDIGVITP--YNGQVELIRNILNSRCSLKPVE---- 219 V+++V + DIGVI + + L +++L + Sbjct: 607 DVVFRKGDKVLQLVNRPNDNIFN-GDIGVIVGIFWAKENALNKDVLVVDFEGNEITFTKQ 665 Query: 220 ---------VSTVDSFQGREKDIIILSLVR 240 +++ QG E I+I+ +V+ Sbjct: 666 DMMELTHAYCTSIHKSQGSEFPIVIMPIVK 695 >tr:Q6G8V0_STAAS Hypothetical protein. Staphylococcus aureus (strain MSSA476). Length = 825 Score = 32.9 bits (74), Expect = 0.50 Identities = 47/270 (17%), Positives = 95/270 (35%), Gaps = 48/270 (17%) Query: 14 SKRKSLALEKFKFDVVIIDEAAQA-----LEAECLIPLLLAKKKFILVGDHKQLPPT--- 65 +K + + + ++IIDE + + +PL + I VGD QLP Sbjct: 431 TKPEDILENEINARLIIIDEMSMVDTWLFHQFLSAVPL---DAQLIFVGDEDQLPSVGPG 487 Query: 66 -IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHP----EICRLPSNLFYEGNGLV 120 + +KA +L E + + +RM +I + + + Sbjct: 488 QVFKDLIESKAIPRVNLTEVY-RQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQAN 546 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG-----EAEF- 174 I +V ++ + N G+ ++ + N+G++ NP E EF Sbjct: 547 QIPTVVEKVVTSAVNKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFG 606 Query: 175 ---------VVEIVEYLLRSGVPPEDIGVITP--YNGQVELIRNILNSRCSLKPVE---- 219 V+++V + DIGVI + + L +++L + Sbjct: 607 DVVFRKGDKVLQLVNRPNDNIFN-GDIGVIVGIFWAKENALNKDVLVVDFEGNEITFTKQ 665 Query: 220 ---------VSTVDSFQGREKDIIILSLVR 240 +++ QG E I+I+ +V+ Sbjct: 666 DMMELTHAYCTSIHKSQGSEFPIVIMPIVK 695 >tr:Q58NR6_9CORO Spike glycoprotein. Bovine coronavirus. Length = 1363 Score = 32.9 bits (74), Expect = 0.50 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF LNVQYR++ Sbjct: 957 KVLPPLLSENQISGYTLAATSASLFPPWSAAAGVPFYLNVQYRIN 1001 >tr:Q6WHZ8_BPKV4 Dda. Bacteriophage KVP40. Length = 411 Score = 32.9 bits (74), Expect = 0.51 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Query: 25 KFDVVIIDEAAQALEAECLIPLLLAKKKF-IL-VGDHKQLPPT 65 + DV++++EA+ E I +K IL VGD QL P Sbjct: 91 EIDVLVVEEASMVDEELFQITGRTMPRKCRILAVGDKYQLQPV 133 >tr:Q5GUA0_XANOR Exodeoxyribonuclease V alpha chain. Xanthomonas oryzae (pv. oryzae). Length = 769 Score = 32.9 bits (74), Expect = 0.51 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Query: 27 DVVIIDEAAQALEAEC--LIPLLLAKKKFILVGDHKQLPPT 65 D++++DEA+ L+ + + IL+GD QLP Sbjct: 338 DLIVVDEASMVDLPLMCKLVEAVADGTQLILLGDADQLPSV 378 >tr:Q6GG84_STAAR Hypothetical protein. Staphylococcus aureus (strain MRSA252). Length = 825 Score = 32.9 bits (74), Expect = 0.51 Identities = 47/270 (17%), Positives = 95/270 (35%), Gaps = 48/270 (17%) Query: 14 SKRKSLALEKFKFDVVIIDEAAQA-----LEAECLIPLLLAKKKFILVGDHKQLPPT--- 65 +K + + + ++IIDE + + +PL + I VGD QLP Sbjct: 431 TKPEDILENEINARLIIIDEMSMVDTWLFHQFLSAVPL---DAQLIFVGDEDQLPSVGPG 487 Query: 66 -IKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHP----EICRLPSNLFYEGNGLV 120 + +KA +L E + + +RM +I + + + Sbjct: 488 QVFKDLIESKAIPRVNLTEVY-RQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQAN 546 Query: 121 DISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPG-----EAEF- 174 I +V ++ + N G+ ++ + N+G++ NP E EF Sbjct: 547 QIPTVVEKVVTSAVNKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFG 606 Query: 175 ---------VVEIVEYLLRSGVPPEDIGVITP--YNGQVELIRNILNSRCSLKPVE---- 219 V+++V + DIGVI + + L +++L + Sbjct: 607 DVVFRKGDKVLQLVNRPNDNIFN-GDIGVIVGIFWAKENALNKDVLVVDFEGNEITFTKQ 665 Query: 220 ---------VSTVDSFQGREKDIIILSLVR 240 +++ QG E I+I+ +V+ Sbjct: 666 DMMELTHAYCTSIHKSQGSEFPIVIMPIVK 695 >tr:Q9QAQ8_9CORO Spike glycoprotein. Bovine coronavirus. Length = 1363 Score = 32.9 bits (74), Expect = 0.51 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF LNVQYR++ Sbjct: 957 KVLPPLLSENQISGYTLAATSASLFPPWSAAAGVPFYLNVQYRIN 1001 >tr:Q58NR7_9CORO Spike glycoprotein. Bovine coronavirus. Length = 1363 Score = 32.9 bits (74), Expect = 0.51 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF LNVQYR++ Sbjct: 957 KVLPPLLSENQISGYTLAATSASLFPPWSAAAGVPFYLNVQYRIN 1001 >tr:Q58NR8_9CORO Spike glycoprotein. Bovine coronavirus. Length = 1363 Score = 32.9 bits (74), Expect = 0.51 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF LNVQYR++ Sbjct: 957 KVLPPLLSENQISGYTLAATSASLFPPWSAAAGVPFYLNVQYRIN 1001 >tr:Q58NR5_9CORO Spike glycoprotein. Bovine coronavirus. Length = 1363 Score = 32.9 bits (74), Expect = 0.51 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF LNVQYR++ Sbjct: 957 KVLPPLLSENQISGYTLAATSASLFPPWSAAAGVPFYLNVQYRIN 1001 >tr:Q58NS0_9CORO Spike glycoprotein. Bovine coronavirus. Length = 1363 Score = 32.9 bits (74), Expect = 0.51 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF LNVQYR++ Sbjct: 957 KVLPPLLSENQISGYTLAATSASLFPPWSAAAGVPFYLNVQYRIN 1001 >tr:Q7T5A1_9CORO Spike glycoprotein. Canine respiratory coronavirus. Length = 1363 Score = 32.9 bits (74), Expect = 0.51 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Query: 60 KQLPPTIKSKKAAAK--AGLEESLFERLVELGVSVVRLNVQYRMH 102 K LPP + + + A SLF LNVQYR++ Sbjct: 957 KVLPPLLSENQISGYTLAATFASLFPPWSAAAGVPFYLNVQYRIN 1001 >tr:Q5WI67_BACSK DNA helicase. Bacillus clausii (strain KSM-K16). Length = 627 Score = 32.9 bits (74), Expect = 0.52 Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 37/159 (23%) Query: 56 VGDHKQLPPTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYE 115 VGD KQ + L +S + + + S + L +R P + + + Sbjct: 259 VGDDKQ-------RIMGWAGALSDSFEQFIHDFNASQIELTRNHRSAPRLIEIQN----- 306 Query: 116 GNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFV 175 +A+ + ++ + + + V N + EA FV Sbjct: 307 --------IIAKIINQNTVDAIVSSKHNELEGVCEVWN-----------FQTHLDEAFFV 347 Query: 176 VE-IVEYLLRSGVPPEDIGVITPYNGQVELI--RNILNS 211 I + + V P DI +I Q E I RNI+ Sbjct: 348 ASSIAKRIQEENVIPSDICII---VKQHEHIYARNIIAE 383 >tr:Q6J655_9VIRU Putative RNA-dependent RNA polymerase. Dendrolimus punctatus tetravirus. Length = 1649 Score = 32.9 bits (74), Expect = 0.52 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Query: 26 FDVVIIDEAAQALEAECLIPLLLA---KKKFILVGDHKQLPPTIK 67 +++V+IDE + + ++ A + K +LVGD Q+ Sbjct: 664 YELVVIDEC--FMLPLVYVSIVAAISPESKIVLVGDENQIGFIDF 706 >tr:Q8YL64_ANASP Exodeoxyribonuclease V, alpha chain. Anabaena sp. (strain PCC 7120). Length = 748 Score = 32.9 bits (74), Expect = 0.53 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 26 FDVVIIDEAAQA--LEAECLIPLLLAKKKFILVGDHKQLPPT 65 F +I DEA+ A L+ + + +LVGD QLP Sbjct: 438 FSAIIADEASMLDLFLAHSLVKAVAQGAQLLLVGDIDQLPSV 479 >tr:Q7CY17_AGRT5 AGR_C_3671p. Agrobacterium tumefaciens (strain C58 / ATCC 33970). Length = 325 Score = 32.9 bits (74), Expect = 0.55 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 3/81 (3%) Query: 28 VVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKA-GLEESLFERLV 86 ++IIDE + E L+ +++GD QLPP + S R Sbjct: 65 LIIIDECSMVDEQLG-KDLMSFGTPILVLGDPGQLPPVSGGGFFTEQEPDFLLSEIHRQA 123 Query: 87 ELGVSVVRLNVQYRMHPEICR 107 ++ L + R EI R Sbjct: 124 -KDNPIIHLAMDVREGREIMR 143 >tr:Q98LM6_RHILO Probable conjugal transfer protein; TraA. Rhizobium loti (Mesorhizobium loti). Length = 1015 Score = 32.9 bits (74), Expect = 0.55 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%) Query: 27 DVVIIDEAAQALEAECLIPLLLA---KKKFILVGDHKQL 62 DV++IDE + L A K +LVGD +QL Sbjct: 440 DVLVIDETGMVGTRQLERVLSHAANVGAKVVLVGDPQQL 478 >tr:Q89IZ1_BRAJA ATP-dependent DNA helicase. Bradyrhizobium japonicum. Length = 685 Score = 32.9 bits (74), Expect = 0.56 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 7/103 (6%) Query: 13 ASKRKSLALEKFKFDVVIIDE--AAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKK 70 S +FD V++DE L++ L+ L + +VGD Q +I S + Sbjct: 221 MSDALIAEEIGGRFDHVLVDEYQDTNRLQSSILLALKPDGRGLTVVGDDAQ---SIYSFR 277 Query: 71 AAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLF 113 AA + E F + ++ L+ YR + + + Sbjct: 278 AATVRNILE--FPQSFSPRAEMITLDRNYRSTQAVLAAANGVI 318 >tr:Q6FPW0_CANGA Similar to sp|P38766 Saccharomyces cerevisiae YHR031c RRM3. Candida glabrata (Yeast) (Torulopsis glabrata). Length = 705 Score = 32.9 bits (74), Expect = 0.57 Identities = 32/186 (17%), Positives = 56/186 (30%), Gaps = 27/186 (14%) Query: 24 FKFDVVIIDEAAQA--LEAECLIPLLLAKK---------KFILVGDHKQLPPTIKSKKAA 72 V+IIDE + + L + + + +L GD QLPP SKK Sbjct: 308 RHTKVLIIDEISMLDGHYLDKLEAVAKQLRNNDRPFGGIQLVLTGDFFQLPPV--SKKDD 365 Query: 73 AKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYD 132 K + + + + L +R + L N + ++ Sbjct: 366 DKNVVFCFDSKMWKKCIQKTILLTKVFRQQD------NELVDILNAIRYGELQNDMIKRI 419 Query: 133 SANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQN-PGEAEFVVEI------VEYLLRS 185 + P I P E + + PGEA+ + + +L + Sbjct: 420 KSLGRDVYYPDGISPTELFPTRR-EVDISNSRQLEALPGEAKIYESVDVAPPSYQNMLDN 478 Query: 186 GVPPED 191 V E Sbjct: 479 SVMAEK 484 >tr:Q9HWB7_PSEAE Exodeoxyribonuclease V alpha chain. Pseudomonas aeruginosa. Length = 721 Score = 32.9 bits (74), Expect = 0.57 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Query: 27 DVVIIDEAAQA---LEAECLIPLLLAKKKFILVGDHKQLPPT 65 DV+++DEA+ + A L L + IL+GD QL Sbjct: 325 DVLVVDEASMIDLEMMASLLDALPPQ-ARLILLGDKDQLASV 365 >tr:Q9IMN1_9BROM Replicase 1a (Fragment). Hydrangea mosaic virus. Length = 387 Score = 32.9 bits (74), Expect = 0.58 Identities = 27/145 (18%), Positives = 44/145 (30%), Gaps = 23/145 (15%) Query: 4 VVAMTCTGAASKRKSLALEKFKF--DVVIIDEAAQALEAECLIPLLLAK-KKFILVGDHK 60 V+ T S + K F D +++DE LA+ K+ I GD K Sbjct: 143 VIPETLLYRVRTVDSYLMLKNWFTADRLLVDECFLVHAGLIYAAATLARVKEVIAFGDTK 202 Query: 61 QLP-----PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYE 115 Q+P PT+ + A+ L+ YR ++ + S FY Sbjct: 203 QIPFVSRIPTVTLRHASVIGKLKPRTMT---------------YRCPRDVTAVLSEKFYN 247 Query: 116 GNGLVDISSVARRLEYDSANPGFFP 140 + + P Sbjct: 248 TKVGTFNPVKTSLELININSGVEIP 272 >tr:Q9Y645_HUMAN DNA helicase homolog (Fragment). Homo sapiens (Human). Length = 374 Score = 32.9 bits (74), Expect = 0.59 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 13/58 (22%) Query: 29 VIIDEAAQALEAECL-------IPLLLAKK-----KFILVGDHKQLPPTIKSKKAAAK 74 ++IDE + EA+ + K + I+ GD QLPP K + Sbjct: 36 LVIDEISMV-EADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTKGSQPPRF 92 >tr:Q5HSU9_CAMJR Hypothetical protein. Campylobacter jejuni (strain RM1221). Length = 788 Score = 32.5 bits (73), Expect = 0.60 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 7/67 (10%) Query: 138 FFPTPQFIVPLSFVDNSGVEEEEPEGYSY-------QNPGEAEFVVEIVEYLLRSGVPPE 190 EE S + FV++ + + +R G+ PE Sbjct: 207 DLKINTHYEINLSKQEILKEEIFKTKNSKMKLKSFELRALQCAFVMDEISHFVRKGLKPE 266 Query: 191 DIGVITP 197 +I VITP Sbjct: 267 NIAVITP 273 >tr:Q9PMI0_CAMJE Hypothetical protein Cj1482c. Campylobacter jejuni. Length = 788 Score = 32.5 bits (73), Expect = 0.61 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 7/67 (10%) Query: 138 FFPTPQFIVPLSFVDNSGVEEEEPEGYSY-------QNPGEAEFVVEIVEYLLRSGVPPE 190 EE S + FV++ + + +R G+ PE Sbjct: 207 DLKINTHYEINLSKQEILKEEIFKTKNSKMKLKSFELRALQCAFVMDEISHFVRKGLKPE 266 Query: 191 DIGVITP 197 +I VITP Sbjct: 267 NIAVITP 273 >tr:Q5YRC4_NOCFA Putative helicase. Nocardia farcinica. Length = 726 Score = 32.5 bits (73), Expect = 0.65 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 8/82 (9%) Query: 26 FDVVIIDEAAQALEAECLIPLLLAKKK-FILVGDHKQLPPTIKSKKAAAKAGLEESLFER 84 + V++DEA + E + + + + F +VGD Q +++ A A ++ +R Sbjct: 518 YRHVVVDEAQELSEMDWRVLMRRCPSRSFTIVGDLVQ-------RRSPAGATSWAAMLDR 570 Query: 85 LVELGVSVVRLNVQYRMHPEIC 106 V +L V YR EI Sbjct: 571 YVPGRWVYRQLTVNYRTPAEIM 592 >tr:Q8Y511_LISMO Lmo2267 protein. Listeria monocytogenes. Length = 1235 Score = 32.5 bits (73), Expect = 0.68 Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 24/182 (13%) Query: 23 KFKFDVVIIDE--AAQALEAECLIPL---LLAKKKFILVGDHKQLPPTIKSKKAAAKAGL 77 + +F V+IDE ++ L + A+ +VGD KQ Sbjct: 399 QKQFKEVLIDEYQDTNMVQETILRLVTNPSEAQGNLFMVGDVKQ--------SIYRFRLA 450 Query: 78 EESLFERLV-------ELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLE 130 E +LF + L+ +R E+ + +F + Sbjct: 451 EPTLFMTKYQTFQQDGSGNGIRIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAA 510 Query: 131 YDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQ----NPGEAEFVVEIVEYLLRSG 186 + F T L +D + E + S Q N E+ + + ++ + Sbjct: 511 ELTLGANFPETNAMETELLLIDMKTEDTETEDELSPQELQKNQVESRAIAMKIREMIDNK 570 Query: 187 VP 188 P Sbjct: 571 FP 572 >tr:Q6BQK7_DEBHA Similar to CA3002|CaPIF1 Candida albicans CaPIF1 mitochondrial DNA helicase. Debaryomyces hansenii (Yeast) (Torulaspora hansenii). Length = 832 Score = 32.5 bits (73), Expect = 0.72 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 11/53 (20%) Query: 28 VVIIDEAAQA-----LEAECLI-PLLLAKK-----KFILVGDHKQLPPTIKSK 69 V+IIDE + + + + L K + I+ GD QLPP K K Sbjct: 372 VLIIDEISMIDGVFLNKLDSISKTLRKNNKPFGGIQLIVCGDFYQLPPVNKVK 424 >tr:Q8F7H8_LEPIN ATP-dependent exoDNAse, alpha subunit (EC 3.1.11.5). Leptospira interrogans. Length = 617 Score = 32.5 bits (73), Expect = 0.74 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 11/65 (16%) Query: 27 DVVIIDEAAQA---LEAECLIPLLLAKK--------KFILVGDHKQLPPTIKSKKAAAKA 75 ++I+DE + L + + +FIL+GD QLP K + Sbjct: 246 RLIIVDEVSMVDLDLMLSLWNSIPKNETIQEGTIPFRFILIGDPHQLPSVEKGAVLSDFL 305 Query: 76 GLEES 80 + ES Sbjct: 306 SVLES 310 >tr:Q72NZ2_LEPIC Exodeoxyribonuclease v alpha chain. Leptospira interrogans (serogroup Icterohaemorrhagiae / serovar Copenhageni). Length = 617 Score = 32.5 bits (73), Expect = 0.75 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 11/65 (16%) Query: 27 DVVIIDEAAQA---LEAECLIPLLLAKK--------KFILVGDHKQLPPTIKSKKAAAKA 75 ++I+DE + L + + +FIL+GD QLP K + Sbjct: 246 RLIIVDEVSMVDLDLMLSLWNSIPKNETIQEGTIPFRFILIGDPHQLPSVEKGAVLSDFL 305 Query: 76 GLEES 80 + ES Sbjct: 306 SVLES 310 >tr:Q8DSP2_STRMU Putative SNF helicase. Streptococcus mutans. Length = 1030 Score = 32.5 bits (73), Expect = 0.75 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 6/46 (13%) Query: 7 MTCTGAASKRKSLAL-EKFKFDVVIIDEA-----AQALEAECLIPL 46 +T T AS R+ L + FD +I+DEA Q A+ L Sbjct: 679 ITITSYASFRQDFNLYNQLNFDYLILDEAQVMKNTQTKIAQSLRAF 724 >tr:Q8XMT9_CLOPE Hypothetical protein CPE0599. Clostridium perfringens. Length = 706 Score = 32.1 bits (72), Expect = 0.79 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 9/90 (10%) Query: 25 KFDVVIIDEAAQALEAECLIPLL--LAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 + V+IDEA Q + K F +VGD Q + K + A + E L Sbjct: 491 DYRHVVIDEA-QDYSPLQFKVVRELTGTKYFTVVGDVNQ-----RLIKYSDLAPMME-LG 543 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNL 112 + ++ + LN YR EI + Sbjct: 544 KIFDDVNPEIYNLNKSYRSTYEIMEYANKY 573 >tr:Q8GHV1_PSERE Putative helicase. Pseudomonas resinovorans. Length = 488 Score = 32.1 bits (72), Expect = 0.80 Identities = 48/260 (18%), Positives = 76/260 (29%), Gaps = 44/260 (16%) Query: 12 AASKRKSLALEKFKFDVVIIDEAAQALEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKA 71 A K L+ + +DV++ DEA Q + K + I VGD Q + + A Sbjct: 173 AYLKLFQLSNPQLPYDVILFDEA-QDSNPVTASLVAGQKARKIFVGDKWQ--QIYRWRGA 229 Query: 72 ---------AAKAGLEESLFERL--VELGVSVVRLNVQYRMHPEI---------CRLPS- 110 A + + R + GV+ L Q P + LPS Sbjct: 230 ENALDTQIVQGAASMFLTNSFRFGPMIAGVANAILKQQGEARPLVGYGARDKVTTSLPSG 289 Query: 111 -NLFYEGNGLVDI----SSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYS 165 N + N V + A G Q ++E Sbjct: 290 CNHYTVLNRTVIGVIMTAIDAVSDGQVVYWNGGIEAYQISDLEDVYHLKVGRKDEIRNKR 349 Query: 166 YQNP-------GEAEFVVE--IVEYLLRSGVPPEDIGVITPYNGQVELIRNILNSRCSLK 216 EA + + +LR DI + + +R Sbjct: 350 LFGQFSDFGGFAEAAEESKDAEMNRMLRILKEHNDIPKL------IAALRRNSTDDPLDA 403 Query: 217 PVEVSTVDSFQGREKDIIIL 236 V VST +G E D+++L Sbjct: 404 DVIVSTCHRSKGLEWDVVVL 423 >tr:Q73RK3_TREDE ATP-dependent DNA helicase, UvrD/Rep family. Treponema denticola. Length = 1139 Score = 32.1 bits (72), Expect = 0.80 Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 24/163 (14%) Query: 44 IPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERL-----VELGVSVVRLNVQ 98 P L K VGD KQ A G + S+F +L + ++ RL + Sbjct: 380 GPHELCPNKLFFVGDEKQ--------SIYAFRGADVSVFRKLADDISDKERLAATRLLIN 431 Query: 99 YRMHPEICRLPS----NLFYEGNGLVDISSVARRLEYDSANPGFFPTPQ----FIVPLSF 150 YR P + L + +FY + P P + + F Sbjct: 432 YRTEPTLINLFNTIFSKVFYSEVNKPLEKNGFVPAYEAEYVPTETRAPVKGIEPKIEIMF 491 Query: 151 VDNSGVEEEEPEGYSYQNP--GEAEFVVEIVEYLLRSGVPPED 191 D E + + +P EA ++ + + L G D Sbjct: 492 FDKKRFNALE-DSSRFLSPVEAEAFYLAKRILELRNQGFKIRD 533 >tr:Q83JW0_SHIFL DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease. Shigella flexneri. Length = 1180 Score = 32.1 bits (72), Expect = 0.81 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 14/99 (14%) Query: 25 KFDVVIIDEAAQALEAECLIPLLL-----AKKKFILVGDHKQLPPTIKSKKAAAKAGLEE 79 +F V +IDE Q + + + +L+GD KQ + A ++ Sbjct: 377 RFPVAMIDE-FQDTDPQQYRIFRRIWHHQPETALLLIGDPKQ--AIYAFRGADIFTYMKA 433 Query: 80 SLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNG 118 + L+ +R P + + LF + + Sbjct: 434 R------SEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDD 466 >tr:Q8X6M9_ECO57 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease (DNA helicase RecB). Escherichia coli O157:H7. Length = 1180 Score = 32.1 bits (72), Expect = 0.82 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 14/99 (14%) Query: 25 KFDVVIIDEAAQALEAECLIPLLL-----AKKKFILVGDHKQLPPTIKSKKAAAKAGLEE 79 +F V +IDE Q + + + +L+GD KQ + A ++ Sbjct: 377 RFPVAMIDE-FQDTDPQQYRIFRRIWHHQPETALLLIGDPKQ--AIYAFRGADIFTYMKA 433 Query: 80 SLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNG 118 + L+ +R P + + LF + + Sbjct: 434 R------SEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDD 466 >tr:Q8FEB3_ECOL6 Exodeoxyribonuclease V beta chain (EC 3.1.11.5). Escherichia coli O6. Length = 1183 Score = 32.1 bits (72), Expect = 0.83 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 14/99 (14%) Query: 25 KFDVVIIDEAAQALEAECLIPLLL-----AKKKFILVGDHKQLPPTIKSKKAAAKAGLEE 79 +F V +IDE Q + + + +L+GD KQ + A ++ Sbjct: 380 RFPVAMIDE-FQDTDPQQYRIFRRIWHHQPETALLLIGDPKQ--AIYAFRGADIFTYMKA 436 Query: 80 SLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNG 118 + L+ +R P + + LF + + Sbjct: 437 R------SEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDD 469 >tr:Q63VG1_BURPS Putative exodeoxyribonuclease V alpha chain. Burkholderia pseudomallei (Pseudomonas pseudomallei). Length = 898 Score = 32.1 bits (72), Expect = 0.83 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 26 FDVVIIDEAAQA--LEAECLIPLLLAKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFE 83 +D+V++DEA+ A L+ L + +L+GD QL + A A L Sbjct: 279 YDLVVVDEASMIDVALAAHLLDALAPNARLVLLGDKDQLAAV---EAGAVFAELSARPAF 335 Query: 84 RLVELGVSVVRLNV 97 L V Sbjct: 336 SPATCATIARALGV 349 >tr:O57161_9BROM Putative replicase. Spinach latent virus. Length = 1056 Score = 32.1 bits (72), Expect = 0.85 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 21/122 (17%) Query: 29 VIIDEAAQALEAECLIPLLLAK-KKFILVGDHKQLP-----PTIKSKKAAAKAGLEESLF 82 +++DE LA+ K+ I GD KQ+P PT+K + A+ L+ Sbjct: 839 LLVDECFLVHAGLVYAAATLARVKEVIAFGDTKQIPFVSRIPTVKLRHASVVGTLKPR-- 896 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRLEYDSANPGFFPTP 142 + YR ++ + S FY + + P Sbjct: 897 -------------TITYRCPRDVTAVLSEKFYGTKVKTFNLVKQSLELKNIDSSTEIPVE 943 Query: 143 QF 144 + Sbjct: 944 KD 945 >tr:Q6F1E4_MESFL Exodeoxyribonuclease V. Mesoplasma florum (Acholeplasma florum). Length = 743 Score = 32.1 bits (72), Expect = 0.90 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 28 VVIIDEAAQALEAECLIPLLLAKK--KFILVGDHKQLPPTIKSKKAAAKAGLEESLFERL 85 +VI+DE + + + K +LVGD QLP A L E F + Sbjct: 431 LVILDECSMIDNKLFASFIQSCDRVRKVVLVGDANQLPSVGY---GNTFADLLELDFLKT 487 Query: 86 VELG 89 ++L Sbjct: 488 IKLD 491 >tr:Q6LA55_SCHPO SPAC3H5.09c protein. Schizosaccharomyces pombe (Fission yeast). Length = 2685 Score = 32.1 bits (72), Expect = 0.91 Identities = 21/152 (13%), Positives = 50/152 (32%), Gaps = 11/152 (7%) Query: 75 AGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGNGLVDISSVARRL---EY 131 A +S F ++ +S + L+++Y S +E + +SS + Sbjct: 479 ASKSDSDFPGMLVANLSSMFLDIKY-------SPSSEHIFEIESSLRLSSNKVFYHNPKN 531 Query: 132 DSANPGFFPTPQFIVPLSFVDNSGVEEEEPEGYSYQNPGEAEFVVEIVEYLLRSGVPPED 191 F + ++ G E E + + ++++ + + E Sbjct: 532 KKWLINTSDLITFSLGYICNNDHGSLNMFFR-DFQIRIEEEEVINSLKKFIILTKIKSEQ 590 Query: 192 IGVITPYNGQVELIRNILNSRCSLKPVEVSTV 223 +G P VE + + +EV ++ Sbjct: 591 VGPRKPRTKLVEPLLFRIPKWLKHIQLEVHSL 622 >tr:Q5NMF2_ZYMMO DNA and RNA helicase. Zymomonas mobilis. Length = 1047 Score = 32.1 bits (72), Expect = 0.93 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 10/71 (14%) Query: 50 KKKFILVGDHKQLPPTIKSKKAAAKAGLEESLFERLVEL--GVSVVRLNVQYRMHPEICR 107 + ++GD Q G + F RL + RLN YR +I Sbjct: 694 NTQLTVIGDPDQ--------AIYHFRGADSECFTRLQQDFPETVCRRLNRNYRSMADIVA 745 Query: 108 LPSNLFYEGNG 118 + + E G Sbjct: 746 AANRVMPENKG 756 >tr:Q8Q0V3_METMA Superfamily I DNA and RNA helicase. Methanosarcina mazei (Methanosarcina frisia). Length = 865 Score = 32.1 bits (72), Expect = 0.96 Identities = 26/129 (20%), Positives = 43/129 (33%), Gaps = 11/129 (8%) Query: 102 HPEICRLP--SNLFYEGNGLVDISSVARRLEYDSANPGFFPTPQFIVPLSFVDNSGVEEE 159 + I L S+ F N I ++ +Y FP D++ Sbjct: 127 NKSITELSYLSSEFKRYNNKEFIQQRIQKYDYLFQ-KSSFPLDNSQKRAIVTDDTHNLVV 185 Query: 160 EPEGYSYQNPGEAEFVVEIVEYLLRS---GVPPEDIGVITPYNGQVELIRNILNSRCSLK 216 G G+ E ++ YL V + I ++ N E ++ L R S++ Sbjct: 186 AGAGS-----GKTEVLITRTAYLTERAPDKVDAKKILILAYQNKAAEEVKKRLKDRFSIE 240 Query: 217 PVEVSTVDS 225 EV T S Sbjct: 241 EAEVRTFHS 249 >tr:Q98701_9BROM Replicase. Elm mottle virus. Length = 1055 Score = 32.1 bits (72), Expect = 0.97 Identities = 27/145 (18%), Positives = 44/145 (30%), Gaps = 23/145 (15%) Query: 4 VVAMTCTGAASKRKSLALEKFKF--DVVIIDEAAQALEAECLIPLLLAK-KKFILVGDHK 60 V+ T S + K F D +++DE LA+ K+ I GD K Sbjct: 811 VIPETLLYRVRTVDSYLMLKNWFTADRLLVDECFLVHAGLIYAAATLARVKEVIAFGDTK 870 Query: 61 QLP-----PTIKSKKAAAKAGLEESLFERLVELGVSVVRLNVQYRMHPEICRLPSNLFYE 115 Q+P PT+ + A+ L+ YR ++ + S FY Sbjct: 871 QIPFVSRIPTVTLRHASVIGKLKPRTMT---------------YRCPRDVTAVLSEKFYN 915 Query: 116 GNGLVDISSVARRLEYDSANPGFFP 140 + + P Sbjct: 916 TKVGTFNPVKTSLELININSGVEIP 940 >tr:Q5MZ27_SYNP6 ATP-dependent helicase PcrA. Synechococcus sp. (strain PCC 6301) (Anacystis nidulans). Length = 766 Score = 32.1 bits (72), Expect = 0.99 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 9/95 (9%) Query: 25 KFDVVIIDEAAQALEAECLIPLLL--AKKKFILVGDHKQLPPTIKSKKAAAKAGLEESLF 82 +FD +I+DE A+ LI +L A++ ++VGD Q + A+ L L Sbjct: 227 RFDFLIVDEYQDINRAQNLIISVLDEAQQNLMVVGDDDQ----TIYEWRGARPQLI--LD 280 Query: 83 ERLVELGVSVVRLNVQYRMHPEICRLPSNLFYEGN 117 + V L+ +R L + L Sbjct: 281 KLRDRQWV-QYTLDRNFRSRAPQLLLANALIRHNR 314 Database: /export/scratch/database/MYHITS2/tr.66 Posted date: Jun 13, 2005 6:40 PM Number of letters in database: 567,248,508 Number of sequences in database: 1,779,481 Lambda K H 0.314 0.159 0.429 Lambda K H 0.267 0.0485 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 291,185,813 Number of Sequences: 1779481 Number of extensions: 13436380 Number of successful extensions: 35165 Number of sequences better than 1.0: 967 Number of HSP's better than 1.0 without gapping: 445 Number of HSP's successfully gapped in prelim test: 552 Number of HSP's that attempted gapping in prelim test: 32663 Number of HSP's gapped (non-prelim): 1287 length of query: 258 length of database: 16,252,624 effective HSP length: 8 effective length of query: 250 effective length of database: 16,252,624 effective search space: 4063156000 effective search space used: 4063156000 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 72 (32.1 bits)