SIB BLAST network server version 1.6 of November 26, 2002 compiled by GNU C version 3.2.3 20030502 (Red Hat Linux 3.2.3-49) compiled on Feb 1 2005. Welcome to the SIB BLAST Network Service (noko01) ============================================================================== Swiss Institute of Bioinformatics (SIB) Ludwig Institute for Cancer Research (LICR) Swiss Institute for Experimental Cancer Research (ISREC) ============================================================================== If results of this search are reported or published, please mention that the computation was performed at the SIB using the BLAST network service. PEPTIDE SEQUENCE DATABASES swiss SwissProt + updates 14-Jul-2004 swisstrembl SwissProt+Trembl+TrUpdates 14-Jul-2004 nr Non-redundant SP+Trembl+TrUpdates+gp 14-Jul-2004 shuffled SwissProt r30 shuffled in windows of 20 aa yeast S.cerevisiae translated genome ORFs NUCLEOTIDE SEQUENCE DATABASES embre * EMBL Data Library, Release 79, June 2004 embu * EmblUpdate 14-Jul-2004 embl * EMBL+EmblUpdate 14-Jul-2004 nr * Synonym to embl (and actually redundant). 14-Jul-2004 EST Database of Expressed Sequence Tags 14-Jul-2004 GSS Genome Survey Sequences 14-Jul-2004 HTG High-thruput Genomic Sequences 14-Jul-2004 STS Database of Sequence Tagged Sites 14-Jul-2004 repbase Repbase, August 04, 2002 simple Simple sequence repeats (J. Mol. Evol. 40:120, 1995) yeast S.cerevisiae genome worm C.elegans genome * The est, gss, htg, and sts divisions of EMBL are excluded from these databases. ============================================================================ The BLAST Network Service uses a server developed at SIB and the NCBI BLAST 2 software. For problems regarding this site, please contact one of the following persons: - problems with the programs: Christian Iseli (Christian.Iseli@licr.org) Giovanna Ambrosini (giovanna.ambrosini@isb-sib.ch) - problems with the databases: Victor Jongeneel (Victor.Jongeneel@isb-sib.ch) Laurent Falquet (Laurent.Falquet@isrec.unil.ch) ============================================================================ BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= consensus (105 letters) Database: /export/scratch/database/MYHITS2/sw.69 184,304 sequences; 66,619,967 total letters [blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file [blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sw:TBCD1_MOUSE TBC1 domain family member 1. Mus musculus (Mouse). 104 4e-23 sw:TBCD1_HUMAN TBC1 domain family member 1. Homo sapiens (Human). 46 2e-05 sw:STAB2_HUMAN Stabilin-2 precursor (FEEL-2 protein) (Fasciclin ... 31 0.35 sw:STAB2_MOUSE Stabilin-2 precursor [Contains: Short form stabil... 31 0.37 >sw:TBCD1_MOUSE TBC1 domain family member 1. Mus musculus (Mouse). Length = 1255 Score = 104 bits (260), Expect = 4e-23 Identities = 22/127 (17%), Positives = 33/127 (25%), Gaps = 22/127 (17%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFDCHMVDSCS---------------- 44 A P +S PGV + + T VD Sbjct: 593 HFPVECPAPPEPAQSSPGVSQRKLMRYHSVSTETPHERNVDHLPGGESQGCPGQPSAPPP 652 Query: 45 ----NPASGDQFYRMLRHNFNRHYNSNRAPL--GLYFHAAWLKSKKEYRDAFIKFIDEML 98 AS F++ L+HN + + N P F+KF+ + Sbjct: 653 PRLNPSASSPNFFKYLKHNSSGEQSGNAVPKSVSYRNALRKKLHSSSSVPNFLKFLAPVD 712 Query: 99 ARNDVFF 105 N F Sbjct: 713 ENNTCDF 719 >sw:TBCD1_HUMAN TBC1 domain family member 1. Homo sapiens (Human). Length = 1168 Score = 45.5 bits (107), Expect = 2e-05 Identities = 6/36 (16%), Positives = 8/36 (22%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFD 36 P R PGV + + T Sbjct: 599 HFPIECQEPPQPARGSPGVSQRKLMRYHSVSTETPH 634 >sw:STAB2_HUMAN Stabilin-2 precursor (FEEL-2 protein) (Fasciclin EGF-like laminin-type EGF-like and link domain-containing scavenger receptor-1) (FAS1 EGF- like and X-link domain containing adhesion molecule-2) (Hyaluronan receptor for endocytosis) [Contains: 190 kDa form stabilin 2 (190 kDa hyaluronan receptor for endocytosis)]. Homo sapiens (Human). Length = 2551 Score = 31.3 bits (70), Expect = 0.35 Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 6/47 (12%) Query: 3 KCNGNAHNCPTRSH------PGVWEMVMNELDRRDDPTFDCHMVDSC 43 C N NCPT+S PG E + P C M D C Sbjct: 280 PCQINFGNCPTKSTVCKYDGPGQSHCECKEHYQNFVPGVGCSMTDIC 326 >sw:STAB2_MOUSE Stabilin-2 precursor [Contains: Short form stabilin-2]. Mus musculus (Mouse). Length = 2559 Score = 31.3 bits (70), Expect = 0.37 Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 6/47 (12%) Query: 3 KCNGNAHNCPTRSH------PGVWEMVMNELDRRDDPTFDCHMVDSC 43 C + NCPT+S PG E R P C M D C Sbjct: 288 PCQTSYGNCPTKSTVCRYDGPGQSHCECKEHYRNFVPGVGCSMTDIC 334 Database: /export/scratch/database/MYHITS2/sw.69 Posted date: Jun 15, 2005 7:24 PM Number of letters in database: 66,619,967 Number of sequences in database: 184,304 Lambda K H 0.312 0.166 0.513 Lambda K H 0.267 0.0507 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,705,031 Number of Sequences: 184304 Number of extensions: 840032 Number of successful extensions: 2563 Number of sequences better than 1.0: 4 Number of HSP's better than 1.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 2555 Number of HSP's gapped (non-prelim): 6 length of query: 105 length of database: 16,252,624 effective HSP length: 49 effective length of query: 56 effective length of database: 16,252,624 effective search space: 910146944 effective search space used: 910146944 T: 11 A: 40 X1: 15 ( 6.8 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.6 bits) S2: 67 (30.1 bits) SIB BLAST network server version 1.6 of November 26, 2002 compiled by GNU C version 3.2.3 20030502 (Red Hat Linux 3.2.3-49) compiled on Feb 1 2005. Welcome to the SIB BLAST Network Service (noko01) ============================================================================== Swiss Institute of Bioinformatics (SIB) Ludwig Institute for Cancer Research (LICR) Swiss Institute for Experimental Cancer Research (ISREC) ============================================================================== If results of this search are reported or published, please mention that the computation was performed at the SIB using the BLAST network service. PEPTIDE SEQUENCE DATABASES swiss SwissProt + updates 14-Jul-2004 swisstrembl SwissProt+Trembl+TrUpdates 14-Jul-2004 nr Non-redundant SP+Trembl+TrUpdates+gp 14-Jul-2004 shuffled SwissProt r30 shuffled in windows of 20 aa yeast S.cerevisiae translated genome ORFs NUCLEOTIDE SEQUENCE DATABASES embre * EMBL Data Library, Release 79, June 2004 embu * EmblUpdate 14-Jul-2004 embl * EMBL+EmblUpdate 14-Jul-2004 nr * Synonym to embl (and actually redundant). 14-Jul-2004 EST Database of Expressed Sequence Tags 14-Jul-2004 GSS Genome Survey Sequences 14-Jul-2004 HTG High-thruput Genomic Sequences 14-Jul-2004 STS Database of Sequence Tagged Sites 14-Jul-2004 repbase Repbase, August 04, 2002 simple Simple sequence repeats (J. Mol. Evol. 40:120, 1995) yeast S.cerevisiae genome worm C.elegans genome * The est, gss, htg, and sts divisions of EMBL are excluded from these databases. ============================================================================ The BLAST Network Service uses a server developed at SIB and the NCBI BLAST 2 software. For problems regarding this site, please contact one of the following persons: - problems with the programs: Christian Iseli (Christian.Iseli@licr.org) Giovanna Ambrosini (giovanna.ambrosini@isb-sib.ch) - problems with the databases: Victor Jongeneel (Victor.Jongeneel@isb-sib.ch) Laurent Falquet (Laurent.Falquet@isrec.unil.ch) ============================================================================ BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= consensus (105 letters) Database: /export/scratch/database/MYHITS2/tr.66 1,779,481 sequences; 567,248,508 total letters [blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file [blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr:Q9VW32_DROME CG8756-PA, isoform A. Drosophila melanogaster (F... 162 2e-40 tr:Q9VW31_DROME CG8756-PC, isoform C. Drosophila melanogaster (F... 161 4e-40 tr:Q8IQU1_DROME CG8756-PD, isoform D (LD36620p). Drosophila mela... 161 5e-40 tr:Q9VW30_DROME CG8756-PB, isoform B. Drosophila melanogaster (F... 161 6e-40 tr:Q9VPI3_DROME CG31973-PB, isoform B. Drosophila melanogaster (... 159 2e-39 tr:Q7PKC7_ANOGA ENSANGP00000022426 (Fragment). Anopheles gambiae... 158 3e-39 tr:Q7PZI9_ANOGA ENSANGP00000015352 (Fragment). Anopheles gambiae... 157 6e-39 tr:Q7PKC6_ANOGA ENSANGP00000024392 (Fragment). Anopheles gambiae... 157 7e-39 tr:Q8MSU2_DROME LP01646p. Drosophila melanogaster (Fruit fly). 157 8e-39 tr:Q7Q401_ANOGA ENSANGP00000011077 (Fragment). Anopheles gambiae... 156 2e-38 tr:Q9VPI4_DROME CG31973-PA, isoform A. Drosophila melanogaster (... 155 2e-38 tr:Q9VJI8_DROME CG17905-PA (RE01566p). Drosophila melanogaster (... 154 5e-38 tr:Q86P23_DROME RE22242p. Drosophila melanogaster (Fruit fly). 153 1e-37 tr:Q9VW34_DROME CG32209-PB. Drosophila melanogaster (Fruit fly). 153 1e-37 tr:Q7PZI8_ANOGA ENSANGP00000015354 (Fragment). Anopheles gambiae... 152 2e-37 tr:Q7PS06_ANOGA ENSANGP00000021951 (Fragment). Anopheles gambiae... 150 8e-37 tr:Q9VR69_DROME CG32499-PA (RE51076p). Drosophila melanogaster (... 148 2e-36 tr:Q9V7Z2_DROME CG15918-PA. Drosophila melanogaster (Fruit fly). 147 4e-36 tr:Q95QQ8_CAEEL Lin-12 and glp-1 x-hybridizing protein 1, isofor... 122 2e-28 tr:Q8MQ36_CAEEL Hypothetical protein F48E3.8. Caenorhabditis ele... 119 1e-27 tr:Q8MQ37_CAEEL Hypothetical protein F48E3.8. Caenorhabditis ele... 119 1e-27 tr:Q8MQ35_CAEEL Hypothetical protein F48E3.8. Caenorhabditis ele... 116 1e-26 tr:Q612I1_CAEBR Hypothetical protein CBG16715. Caenorhabditis br... 99 2e-21 tr:Q6PJJ8_HUMAN TBC1D1 protein (Fragment). Homo sapiens (Human). 46 3e-05 tr:Q7Z6H2_HUMAN TBC1D1 protein (Fragment). Homo sapiens (Human). 46 3e-05 tr:Q5LV30_SILPO Polysaccharide deacetylase family protein. Silic... 37 0.017 tr:Q5BA85_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. 35 0.046 tr:Q6F6Y6_ACIAD Hypothetical protein. Acinetobacter sp. (strain ... 34 0.086 tr:Q5YVB3_NOCFA Hypothetical protein. Nocardia farcinica. 34 0.090 tr:Q82E19_STRAW Hypothetical protein. Streptomyces avermitilis. 34 0.13 tr:Q7YLQ2_9CONI Small ribosomal protein 4 (Fragment). Cephalotax... 33 0.16 tr:Q9F2R8_STRCO Putative secreted protein. Streptomyces coelicolor. 33 0.21 tr:Q9X926_STRCO Putative secreted protein. Streptomyces coelicolor. 33 0.24 tr:Q82EL3_STRAW Hypothetical protein. Streptomyces avermitilis. 32 0.32 tr:Q800B3_FUGRU JunB protein. Fugu rubripes (Japanese pufferfish... 32 0.47 tr:Q667N0_YERPS Hypothetical protein. Yersinia pseudotuberculosis. 31 0.68 tr:Q8D119_YERPE Hypothetical protein y1218. Yersinia pestis. 31 0.71 >tr:Q9VW32_DROME CG8756-PA, isoform A. Drosophila melanogaster (Fruit fly). Length = 570 Score = 162 bits (410), Expect = 2e-40 Identities = 94/110 (85%), Positives = 99/110 (90%), Gaps = 6/110 (5%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFD-----CHMVDSCSNPASGDQFYRM 55 PHKCNGNAHNCP+RSHP VWEMVMNELDRRDDPTFD CHMVDSCSN ASGDQF R+ Sbjct: 382 PHKCNGNAHNCPSRSHP-VWEMVMNELDRRDDPTFDESLPGCHMVDSCSNVASGDQFARL 440 Query: 56 LRHNFNRHYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 LRHNFNRHYNSNRAPLGL+FHA+WLKSKKEYRD IKFI+EML RNDVFF Sbjct: 441 LRHNFNRHYNSNRAPLGLHFHASWLKSKKEYRDELIKFIEEMLGRNDVFF 490 >tr:Q9VW31_DROME CG8756-PC, isoform C. Drosophila melanogaster (Fruit fly). Length = 531 Score = 161 bits (408), Expect = 4e-40 Identities = 94/110 (85%), Positives = 99/110 (90%), Gaps = 6/110 (5%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFD-----CHMVDSCSNPASGDQFYRM 55 PHKCNGNAHNCP+RSHP VWEMVMNELDRRDDPTFD CHMVDSCSN ASGDQF R+ Sbjct: 343 PHKCNGNAHNCPSRSHP-VWEMVMNELDRRDDPTFDESLPGCHMVDSCSNVASGDQFARL 401 Query: 56 LRHNFNRHYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 LRHNFNRHYNSNRAPLGL+FHA+WLKSKKEYRD IKFI+EML RNDVFF Sbjct: 402 LRHNFNRHYNSNRAPLGLHFHASWLKSKKEYRDELIKFIEEMLGRNDVFF 451 >tr:Q8IQU1_DROME CG8756-PD, isoform D (LD36620p). Drosophila melanogaster (Fruit fly). Length = 525 Score = 161 bits (407), Expect = 5e-40 Identities = 94/110 (85%), Positives = 99/110 (90%), Gaps = 6/110 (5%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFD-----CHMVDSCSNPASGDQFYRM 55 PHKCNGNAHNCP+RSHP VWEMVMNELDRRDDPTFD CHMVDSCSN ASGDQF R+ Sbjct: 337 PHKCNGNAHNCPSRSHP-VWEMVMNELDRRDDPTFDESLPGCHMVDSCSNVASGDQFARL 395 Query: 56 LRHNFNRHYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 LRHNFNRHYNSNRAPLGL+FHA+WLKSKKEYRD IKFI+EML RNDVFF Sbjct: 396 LRHNFNRHYNSNRAPLGLHFHASWLKSKKEYRDELIKFIEEMLGRNDVFF 445 >tr:Q9VW30_DROME CG8756-PB, isoform B. Drosophila melanogaster (Fruit fly). Length = 549 Score = 161 bits (407), Expect = 6e-40 Identities = 94/110 (85%), Positives = 99/110 (90%), Gaps = 6/110 (5%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFD-----CHMVDSCSNPASGDQFYRM 55 PHKCNGNAHNCP+RSHP VWEMVMNELDRRDDPTFD CHMVDSCSN ASGDQF R+ Sbjct: 361 PHKCNGNAHNCPSRSHP-VWEMVMNELDRRDDPTFDESLPGCHMVDSCSNVASGDQFARL 419 Query: 56 LRHNFNRHYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 LRHNFNRHYNSNRAPLGL+FHA+WLKSKKEYRD IKFI+EML RNDVFF Sbjct: 420 LRHNFNRHYNSNRAPLGLHFHASWLKSKKEYRDELIKFIEEMLGRNDVFF 469 >tr:Q9VPI3_DROME CG31973-PB, isoform B. Drosophila melanogaster (Fruit fly). Length = 2833 Score = 159 bits (402), Expect = 2e-39 Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Query: 3 KCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFDCHMVDSCSNPASGDQFYRMLRHNFNR 62 + CPTRS+PGVW++ M D C M D+CSNP+ D +M+ NF R Sbjct: 2649 FHDCMIPPCPTRSYPGVWQVPMVMWQ--DLNGGRCSMGDACSNPSDADGVTKMIMKNFER 2706 Query: 63 HYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 HY +NRAP GL++HAAW FIKF+D + A DV+ Sbjct: 2707 HYTTNRAPFGLFYHAAWFTQPHHKEG-FIKFLDAINAMQDVWI 2748 >tr:Q7PKC7_ANOGA ENSANGP00000022426 (Fragment). Anopheles gambiae str. PEST. Length = 546 Score = 158 bits (400), Expect = 3e-39 Identities = 90/110 (81%), Positives = 98/110 (89%), Gaps = 6/110 (5%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFD-----CHMVDSCSNPASGDQFYRM 55 PHKCNGNAHNCP+RSHP VWEMVMNELDRRDDPTFD CHMVDSCSN SG+QF R+ Sbjct: 358 PHKCNGNAHNCPSRSHP-VWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQSGEQFGRL 416 Query: 56 LRHNFNRHYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 LRHNFNRHYN+NRAPLGL+FHA+WLKSKKEYR+ IKFI+EML RNDVFF Sbjct: 417 LRHNFNRHYNTNRAPLGLHFHASWLKSKKEYREELIKFIEEMLGRNDVFF 466 >tr:Q7PZI9_ANOGA ENSANGP00000015352 (Fragment). Anopheles gambiae str. PEST. Length = 501 Score = 157 bits (398), Expect = 6e-39 Identities = 90/110 (81%), Positives = 98/110 (89%), Gaps = 6/110 (5%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFD-----CHMVDSCSNPASGDQFYRM 55 PHKCNGNAHNCP+RSHP VWEMVMNELDRRDDPTFD CHMVDSCSN SG+QF R+ Sbjct: 313 PHKCNGNAHNCPSRSHP-VWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQSGEQFGRL 371 Query: 56 LRHNFNRHYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 LRHNFNRHYN+NRAPLGL+FHA+WLKSKKEYR+ IKFI+EML RNDVFF Sbjct: 372 LRHNFNRHYNTNRAPLGLHFHASWLKSKKEYREELIKFIEEMLGRNDVFF 421 >tr:Q7PKC6_ANOGA ENSANGP00000024392 (Fragment). Anopheles gambiae str. PEST. Length = 507 Score = 157 bits (398), Expect = 7e-39 Identities = 90/110 (81%), Positives = 98/110 (89%), Gaps = 6/110 (5%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFD-----CHMVDSCSNPASGDQFYRM 55 PHKCNGNAHNCP+RSHP VWEMVMNELDRRDDPTFD CHMVDSCSN SG+QF R+ Sbjct: 319 PHKCNGNAHNCPSRSHP-VWEMVMNELDRRDDPTFDESLPGCHMVDSCSNIQSGEQFGRL 377 Query: 56 LRHNFNRHYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 LRHNFNRHYN+NRAPLGL+FHA+WLKSKKEYR+ IKFI+EML RNDVFF Sbjct: 378 LRHNFNRHYNTNRAPLGLHFHASWLKSKKEYREELIKFIEEMLGRNDVFF 427 >tr:Q8MSU2_DROME LP01646p. Drosophila melanogaster (Fruit fly). Length = 256 Score = 157 bits (397), Expect = 8e-39 Identities = 94/110 (85%), Positives = 99/110 (90%), Gaps = 6/110 (5%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFD-----CHMVDSCSNPASGDQFYRM 55 PHKCNGNAHNCP+RSHP VWEMVMNELDRRDDPTFD CHMVDSCSN ASGDQF R+ Sbjct: 68 PHKCNGNAHNCPSRSHP-VWEMVMNELDRRDDPTFDESLPGCHMVDSCSNVASGDQFARL 126 Query: 56 LRHNFNRHYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 LRHNFNRHYNSNRAPLGL+FHA+WLKSKKEYRD IKFI+EML RNDVFF Sbjct: 127 LRHNFNRHYNSNRAPLGLHFHASWLKSKKEYRDELIKFIEEMLGRNDVFF 176 >tr:Q7Q401_ANOGA ENSANGP00000011077 (Fragment). Anopheles gambiae str. PEST. Length = 499 Score = 156 bits (394), Expect = 2e-38 Identities = 57/105 (54%), Positives = 75/105 (71%), Gaps = 4/105 (3%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFDCHMVDSCSNPASGDQFYRMLRHNF 60 PH CNGN CP+RS+PG+WE+VMN+L+ + C MVD+C +G+ YRM HNF Sbjct: 321 PHACNGNNQYCPSRSYPGIWELVMNQLEAGEYT---CGMVDTCPPHMNGEDVYRMFVHNF 377 Query: 61 NRHYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 RHY+SNRAPLGLYFH+ W K+EY DAF++F+D+M DV+F Sbjct: 378 KRHYHSNRAPLGLYFHSTWF-RKQEYLDAFLRFLDDMAKYPDVYF 421 >tr:Q9VPI4_DROME CG31973-PA, isoform A. Drosophila melanogaster (Fruit fly). Length = 1039 Score = 155 bits (393), Expect = 2e-38 Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Query: 3 KCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFDCHMVDSCSNPASGDQFYRMLRHNFNR 62 + CPTRS+PGVW++ M D C M D+CSNP+ D +M+ NF R Sbjct: 855 FHDCMIPPCPTRSYPGVWQVPMVMWQ--DLNGGRCSMGDACSNPSDADGVTKMIMKNFER 912 Query: 63 HYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 HY +NRAP GL++HAAW FIKF+D + A DV+ Sbjct: 913 HYTTNRAPFGLFYHAAWFTQPHHKEG-FIKFLDAINAMQDVWI 954 >tr:Q9VJI8_DROME CG17905-PA (RE01566p). Drosophila melanogaster (Fruit fly). Length = 577 Score = 154 bits (390), Expect = 5e-38 Identities = 57/105 (54%), Positives = 73/105 (69%), Gaps = 4/105 (3%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFDCHMVDSCSNPASGDQFYRMLRHNF 60 PH C G NCP+RS+PG+WE+VMN+L+ + C MVD+C SG+ YRML HNF Sbjct: 399 PHSCTGVNQNCPSRSYPGIWELVMNQLEVGEYM---CGMVDTCPPHLSGEDVYRMLTHNF 455 Query: 61 NRHYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 RHY SNRAP GLYFH+ W K K +Y +AF+KF+D++ DVFF Sbjct: 456 KRHYLSNRAPFGLYFHSTWFK-KVDYLNAFLKFLDDLQKLPDVFF 499 >tr:Q86P23_DROME RE22242p. Drosophila melanogaster (Fruit fly). Length = 541 Score = 153 bits (387), Expect = 1e-37 Identities = 74/111 (66%), Positives = 87/111 (78%), Gaps = 7/111 (6%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFD-----CHMVDSCSNPASGDQFYRM 55 PH+C+GN +CPTRSH VWEMVMNELDRR+DP D C MVDSCSN +GDQFY Sbjct: 353 PHRCHGNLQSCPTRSH-AVWEMVMNELDRREDPVNDEYLPGCAMVDSCSNILTGDQFYNF 411 Query: 56 LRHNFNRHYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLAR-NDVFF 105 L HNF+RHY+ NRAPLGLYFHAAWLK+ E+ DAF+ +IDE+LA NDV+F Sbjct: 412 LNHNFDRHYDQNRAPLGLYFHAAWLKNNPEFLDAFLYWIDEILANHNDVYF 462 >tr:Q9VW34_DROME CG32209-PB. Drosophila melanogaster (Fruit fly). Length = 541 Score = 153 bits (387), Expect = 1e-37 Identities = 74/111 (66%), Positives = 87/111 (78%), Gaps = 7/111 (6%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFD-----CHMVDSCSNPASGDQFYRM 55 PH+C+GN +CPTRSH VWEMVMNELDRR+DP D C MVDSCSN +GDQFY Sbjct: 353 PHRCHGNLQSCPTRSH-AVWEMVMNELDRREDPVNDEYLPGCAMVDSCSNILTGDQFYNF 411 Query: 56 LRHNFNRHYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLAR-NDVFF 105 L HNF+RHY+ NRAPLGLYFHAAWLK+ E+ DAF+ +IDE+LA NDV+F Sbjct: 412 LNHNFDRHYDQNRAPLGLYFHAAWLKNNPEFLDAFLYWIDEILANHNDVYF 462 >tr:Q7PZI8_ANOGA ENSANGP00000015354 (Fragment). Anopheles gambiae str. PEST. Length = 538 Score = 152 bits (386), Expect = 2e-37 Identities = 75/111 (67%), Positives = 88/111 (79%), Gaps = 7/111 (6%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFD-----CHMVDSCSNPASGDQFYRM 55 PH+C+GN +CPTRSH VWEMVMNELDRR+DPT D C MVDSCSN +GDQFY Sbjct: 350 PHRCHGNLQSCPTRSH-AVWEMVMNELDRREDPTNDEYLPGCAMVDSCSNILTGDQFYNF 408 Query: 56 LRHNFNRHYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLAR-NDVFF 105 L HNF+RHY+ NRAPLGLYFHAAWLK+ E+ DAF+ +IDE+LA NDV+F Sbjct: 409 LNHNFDRHYDQNRAPLGLYFHAAWLKNNPEFLDAFLYWIDEVLANHNDVYF 459 >tr:Q7PS06_ANOGA ENSANGP00000021951 (Fragment). Anopheles gambiae str. PEST. Length = 487 Score = 150 bits (379), Expect = 8e-37 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 4/106 (3%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFDCHMVDSCSNP-ASGDQFYRMLRHN 59 PH+C CPT+S PG+WE+ +N C +D C + + L+ + Sbjct: 280 PHECKS--GTCPTKSFPGIWEVPLNAHFVESYEGGHCPYMDQCVLHNHDAEDVFAWLQED 337 Query: 60 FNRHYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 F R+Y N+AP + FH W + K+ R KF+D DV+F Sbjct: 338 FERYYYQNKAPYMMPFHTNWFQIKELERG-LHKFLDWTQTLPDVWF 382 >tr:Q9VR69_DROME CG32499-PA (RE51076p). Drosophila melanogaster (Fruit fly). Length = 486 Score = 148 bits (375), Expect = 2e-36 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Query: 4 CNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFDCHMVDSCSNP-ASGDQFYRMLRHNFNR 62 + CP+R+ PGVWE+ +N C +D C ++ ++ L+ +F+R Sbjct: 282 HECKSGTCPSRTFPGVWEVPLNTHYVEGYEGGHCPYLDQCVLHNLDEEEVFQWLQEDFSR 341 Query: 63 HYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 +Y N+AP + FH W ++K KF+D L DV+ Sbjct: 342 YYEQNKAPYMMPFHTNWFQTKPLENG-LHKFLDWALELPDVYI 383 >tr:Q9V7Z2_DROME CG15918-PA. Drosophila melanogaster (Fruit fly). Length = 397 Score = 147 bits (373), Expect = 4e-36 Identities = 40/105 (38%), Positives = 53/105 (50%), Gaps = 4/105 (3%) Query: 3 KCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFDCHMVDSCSNP--ASGDQFYRMLRHNF 60 K + CP S PG W M D + C M+D+C P D+ + + NF Sbjct: 226 KQDCQIGPCPEASIPGFWVNPMVTW--TDTEGYSCSMIDACVYPPEDDMDELFDWMMENF 283 Query: 61 NRHYNSNRAPLGLYFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 NRHY NRAP G+Y HAAW + Y AF KFI+ + +DV+F Sbjct: 284 NRHYLGNRAPFGMYLHAAWFSRGRNYFGAFKKFINHLNTYSDVYF 328 >tr:Q95QQ8_CAEEL Lin-12 and glp-1 x-hybridizing protein 1, isoform a. Caenorhabditis elegans. Length = 1876 Score = 122 bits (307), Expect = 2e-28 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%) Query: 3 KCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFD-----CHMVDSCSNPASGDQFYRMLR 57 + N +CP S PGVW + +N+ D + + + D+ ++ Sbjct: 1680 AWDCNEASCPKSSFPGVWSVPLNQFYGSYMSQIDSFRRSSMLRAAVDLNNTVDELEEIIT 1739 Query: 58 HNFNRHYNSNRAPLG--LYFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 NF R Y++NRAP L L + A KF++ M A+ DV+ Sbjct: 1740 RNFERSYSANRAPYVLSLNADFLQLGGHNKGMKAVQKFLNRMSAQKDVYI 1789 >tr:Q8MQ36_CAEEL Hypothetical protein F48E3.8. Caenorhabditis elegans. Length = 2427 Score = 119 bits (300), Expect = 1e-27 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 8/110 (7%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFDCHMVDSCSNP--ASGDQFYRMLRH 58 NCPT+SH +WE+ + + D + + + S D +ML+ Sbjct: 2268 HKLAWECDGNCPTQSHKAIWEIPIQNIQANDTRWY---KTLTRAMKPFDSRDSVTKMLQR 2324 Query: 59 NFNRHYNSNRAPLGL---YFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 NF HY +N F ++ + + + ID M D+ Sbjct: 2325 NFMNHYKTNHNGAVYALRDFLKFIVQKQDVFVVTGSQIIDYMRNPVDLNN 2374 >tr:Q8MQ37_CAEEL Hypothetical protein F48E3.8. Caenorhabditis elegans. Length = 1299 Score = 119 bits (300), Expect = 1e-27 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 8/110 (7%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFDCHMVDSCSNP--ASGDQFYRMLRH 58 NCPT+SH +WE+ + + D + + + S D +ML+ Sbjct: 1140 HKLAWECDGNCPTQSHKAIWEIPIQNIQANDTRWY---KTLTRAMKPFDSRDSVTKMLQR 1196 Query: 59 NFNRHYNSNRAPLGL---YFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 NF HY +N F ++ + + + ID M D+ Sbjct: 1197 NFMNHYKTNHNGAVYALRDFLKFIVQKQDVFVVTGSQIIDYMRNPVDLNN 1246 >tr:Q8MQ35_CAEEL Hypothetical protein F48E3.8. Caenorhabditis elegans. Length = 358 Score = 116 bits (292), Expect = 1e-26 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 8/110 (7%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFDCHMVDSCSNP--ASGDQFYRMLRH 58 NCPT+SH +WE+ + + D + + + S D +ML+ Sbjct: 199 HKLAWECDGNCPTQSHKAIWEIPIQNIQANDTRWY---KTLTRAMKPFDSRDSVTKMLQR 255 Query: 59 NFNRHYNSNRAPLGL---YFHAAWLKSKKEYRDAFIKFIDEMLARNDVFF 105 NF HY +N F ++ + + + ID M D+ Sbjct: 256 NFMNHYKTNHNGAVYALRDFLKFIVQKQDVFVVTGSQIIDYMRNPVDLNN 305 >tr:Q612I1_CAEBR Hypothetical protein CBG16715. Caenorhabditis briggsae. Length = 2523 Score = 99.4 bits (247), Expect = 2e-21 Identities = 27/125 (21%), Positives = 42/125 (33%), Gaps = 21/125 (16%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFDCHMVDSCSNPASGDQFYRMLRHNF 60 CPT++H G+WE+ + L D + + S D +ML NF Sbjct: 2346 HKLPWDCTEKCPTQTHKGIWEIPIQNLQGDDSRWYKTLNR-ALKPVDSRDSVKKMLMRNF 2404 Query: 61 NRHYNSNRAPLGL--------------------YFHAAWLKSKKEYRDAFIKFIDEMLAR 100 HY +NRAP L F + + + + ID M + Sbjct: 2405 MNHYKTNRAPFVLTLDTEFLTYLPDNGAIYALEDFLKDIVLKQDVFIVTGSQMIDWMRSP 2464 Query: 101 NDVFF 105 D+ Sbjct: 2465 YDLNN 2469 >tr:Q6PJJ8_HUMAN TBC1D1 protein (Fragment). Homo sapiens (Human). Length = 900 Score = 45.9 bits (108), Expect = 3e-05 Identities = 6/36 (16%), Positives = 8/36 (22%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFD 36 P R PGV + + T Sbjct: 331 HFPIECQEPPQPARGSPGVSQRKLMRYHSVSTETPH 366 >tr:Q7Z6H2_HUMAN TBC1D1 protein (Fragment). Homo sapiens (Human). Length = 891 Score = 45.9 bits (108), Expect = 3e-05 Identities = 6/36 (16%), Positives = 8/36 (22%) Query: 1 PHKCNGNAHNCPTRSHPGVWEMVMNELDRRDDPTFD 36 P R PGV + + T Sbjct: 322 HFPIECQEPPQPARGSPGVSQRKLMRYHSVSTETPH 357 >tr:Q5LV30_SILPO Polysaccharide deacetylase family protein. Silicibacter pomeroyi. Length = 471 Score = 36.7 bits (84), Expect = 0.017 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 48 SGDQFYRMLRHNFNRHYN--SNRAPLGLY--FHAAWLKSKKEYRDAFIKFIDEMLARNDV 103 SGDQF+ L+ +F+ Y AP L H L + A +F+D DV Sbjct: 224 SGDQFFAYLKDSFDALYAEGGEGAPKMLSIGLHCR-LIGRPGRVMALKRFLDYARGHEDV 282 Query: 104 FF 105 +F Sbjct: 283 WF 284 >tr:Q5BA85_EMENI Hypothetical protein. Aspergillus nidulans FGSC A4. Length = 7047 Score = 35.1 bits (80), Expect = 0.046 Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 44 SNPASGDQFYRMLRHNFNRHYNSNRAPLGLYFHAAWLKSKKEYRDAFIK 92 AS + ++ NF +N RAPL +HA L+ + + A Sbjct: 2503 DMEASAQNTLKQIQENFFESFNYQRAPLVEIWHALQLQGRSLFNTALSY 2551 >tr:Q6F6Y6_ACIAD Hypothetical protein. Acinetobacter sp. (strain ADP1). Length = 325 Score = 34.0 bits (77), Expect = 0.086 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Query: 48 SGDQFYRMLRHNFNRHY-NSNRAPLGLY--FHAAWLKSKKEYRDAFIKFIDEMLARNDVF 104 SG+QF++ L+ F+ Y AP L H L + A +F+D + + + V+ Sbjct: 247 SGEQFFQYLKDAFDVLYAEGETAPKMLSIGMHCRILGRPGRF-KALQRFLDYVQSHDRVW 305 Query: 105 F 105 Sbjct: 306 I 306 >tr:Q5YVB3_NOCFA Hypothetical protein. Nocardia farcinica. Length = 396 Score = 34.0 bits (77), Expect = 0.090 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%) Query: 46 PASGDQFYRMLRHNF----NRHYNSNRAPLGLYFHAA-WLKSKKEYRDAFIKFIDEMLAR 100 PA+ Q RM++ + R Y+ NRAPL + H W + + A F+ E R Sbjct: 301 PATAPQVRRMVKQTYDYMYERAYHGNRAPLIIANHFNDW--NGNAFNPATADFMAEACTR 358 Query: 101 ND 102 + Sbjct: 359 PE 360 >tr:Q82E19_STRAW Hypothetical protein. Streptomyces avermitilis. Length = 425 Score = 33.6 bits (76), Expect = 0.13 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 35/119 (29%) Query: 18 GVWEMVMNELD---------RRDDP-----TFDCHMVDSCSNPASGDQFYRMLRHNFNRH 63 GVW++ + + D + + S + P Q F R Sbjct: 268 GVWDLPLQAIPFPGHTFEVLSMDYNILANQSINSTKAPSYNYPGWRTQATNSYIAGFKRA 327 Query: 64 YNSNRAPLGLYFHA---------------------AWLKSKKEYRDAFIKFIDEMLARN 101 Y +NRAP + H K +F +F+D M + Sbjct: 328 YETNRAPFFIGNHFEEWNGGIYMDAVERAFKYIAREKEKGGDVRLVSFRQFVDWMDVQP 386 >tr:Q7YLQ2_9CONI Small ribosomal protein 4 (Fragment). Cephalotaxus drupacea. Length = 191 Score = 33.2 bits (75), Expect = 0.16 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 9/86 (10%) Query: 15 SHPGVWEMV-----MNELDRRDDPTFDCHMVDSCSNPASGDQFYRMLRHNFNRHYNSNRA 69 + PG ++V + D P++ C D S ++ N N S + Sbjct: 89 TIPGARQLVNHRHILVNDRIVDIPSYRCKPQDLISIKDQQRS-RNIINKNIN---LSQKN 144 Query: 70 PLGLYFHAAWLKSKKEYRDAFIKFID 95 + + FH LK K +Y K ID Sbjct: 145 KMRVPFHLNLLKKKSQYVGLVKKIID 170 >tr:Q9F2R8_STRCO Putative secreted protein. Streptomyces coelicolor. Length = 432 Score = 32.8 bits (74), Expect = 0.21 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 14/74 (18%) Query: 18 GVWEMVMNELD---------RRDDP-----TFDCHMVDSCSNPASGDQFYRMLRHNFNRH 63 G+W++ + ++ D + + + + P +Q + F R Sbjct: 276 GIWDLPLQQIPFPGHSFEVLSMDYNILANQSVNSTKAPAYNYPGWREQATKAYISGFKRA 335 Query: 64 YNSNRAPLGLYFHA 77 Y SNRAP + H Sbjct: 336 YESNRAPFFIGNHF 349 >tr:Q9X926_STRCO Putative secreted protein. Streptomyces coelicolor. Length = 431 Score = 32.8 bits (74), Expect = 0.24 Identities = 13/29 (44%), Positives = 15/29 (51%) Query: 49 GDQFYRMLRHNFNRHYNSNRAPLGLYFHA 77 GDQ L F R Y+ NRAPL + H Sbjct: 319 GDQMRDSLLKGFERAYDGNRAPLIIGNHF 347 >tr:Q82EL3_STRAW Hypothetical protein. Streptomyces avermitilis. Length = 423 Score = 32.4 bits (73), Expect = 0.32 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Query: 49 GDQFYRMLRHNFNRHYNSNRAPLGLYFHA-AWLKSKKEYRDAFIKFIDEMLARNDV 103 GDQ L F R Y+ NRAPL + H +W + Y A + I+ + ++V Sbjct: 310 GDQMRDGLLEGFRRAYDGNRAPLIIGNHFESW--NGGTYMRAVQEVIESVCTMDEV 363 >tr:Q800B3_FUGRU JunB protein. Fugu rubripes (Japanese pufferfish) (Takifugu rubripes). Length = 331 Score = 31.6 bits (71), Expect = 0.47 Identities = 14/76 (18%), Positives = 30/76 (39%) Query: 26 ELDRRDDPTFDCHMVDSCSNPASGDQFYRMLRHNFNRHYNSNRAPLGLYFHAAWLKSKKE 85 + R D F D S + + R++ N N + P ++ + ++ Sbjct: 51 QQHLRADSDFYSSGTDVGSLKLASPELERLIIQNSNGVITTTPTPAHYLYNRGITEEQEG 110 Query: 86 YRDAFIKFIDEMLARN 101 + D F+K +D++ N Sbjct: 111 FADGFVKALDDLHKMN 126 >tr:Q667N0_YERPS Hypothetical protein. Yersinia pseudotuberculosis. Length = 316 Score = 31.3 bits (70), Expect = 0.68 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 48 SGDQFYRMLRHNFNRHY-NSNRAPLGLY--FHAAWLKSKKEYRDAFIKFIDEMLARNDVF 104 S +QFY L+ +F+ Y AP + H L +R A +F+D + V+ Sbjct: 235 SSEQFYTYLKDSFDVLYAEGETAPKMMSVGMHCRLLGRPGRFR-ALQRFLDYIQQHERVW 293 >tr:Q8D119_YERPE Hypothetical protein y1218. Yersinia pestis. Length = 255 Score = 31.3 bits (70), Expect = 0.71 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 48 SGDQFYRMLRHNFNRHY-NSNRAPLGLY--FHAAWLKSKKEYRDAFIKFIDEMLARNDVF 104 S +QFY L+ +F+ Y AP + H L +R A +F+D + V+ Sbjct: 174 SSEQFYTYLKDSFDVLYAEGETAPKMMSVGMHCRLLGRPGRFR-ALQRFLDYIQQHERVW 232 Database: /export/scratch/database/MYHITS2/tr.66 Posted date: Jun 13, 2005 6:40 PM Number of letters in database: 567,248,508 Number of sequences in database: 1,779,481 Lambda K H 0.312 0.166 0.513 Lambda K H 0.267 0.0507 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 153,623,320 Number of Sequences: 1779481 Number of extensions: 7470313 Number of successful extensions: 25679 Number of sequences better than 1.0: 39 Number of HSP's better than 1.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 25596 Number of HSP's gapped (non-prelim): 48 length of query: 105 length of database: 16,252,624 effective HSP length: 6 effective length of query: 99 effective length of database: 16,252,624 effective search space: 1609009776 effective search space used: 1609009776 T: 11 A: 40 X1: 15 ( 6.8 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.6 bits) S2: 69 (30.9 bits)