SIB BLAST network server version 1.6 of November 26, 2002 compiled by GNU C version 3.2.3 20030502 (Red Hat Linux 3.2.3-49) compiled on Feb 1 2005. Welcome to the SIB BLAST Network Service (noko01) ============================================================================== Swiss Institute of Bioinformatics (SIB) Ludwig Institute for Cancer Research (LICR) Swiss Institute for Experimental Cancer Research (ISREC) ============================================================================== If results of this search are reported or published, please mention that the computation was performed at the SIB using the BLAST network service. PEPTIDE SEQUENCE DATABASES swiss SwissProt + updates 14-Jul-2004 swisstrembl SwissProt+Trembl+TrUpdates 14-Jul-2004 nr Non-redundant SP+Trembl+TrUpdates+gp 14-Jul-2004 shuffled SwissProt r30 shuffled in windows of 20 aa yeast S.cerevisiae translated genome ORFs NUCLEOTIDE SEQUENCE DATABASES embre * EMBL Data Library, Release 79, June 2004 embu * EmblUpdate 14-Jul-2004 embl * EMBL+EmblUpdate 14-Jul-2004 nr * Synonym to embl (and actually redundant). 14-Jul-2004 EST Database of Expressed Sequence Tags 14-Jul-2004 GSS Genome Survey Sequences 14-Jul-2004 HTG High-thruput Genomic Sequences 14-Jul-2004 STS Database of Sequence Tagged Sites 14-Jul-2004 repbase Repbase, August 04, 2002 simple Simple sequence repeats (J. Mol. Evol. 40:120, 1995) yeast S.cerevisiae genome worm C.elegans genome * The est, gss, htg, and sts divisions of EMBL are excluded from these databases. ============================================================================ The BLAST Network Service uses a server developed at SIB and the NCBI BLAST 2 software. For problems regarding this site, please contact one of the following persons: - problems with the programs: Christian Iseli (Christian.Iseli@licr.org) Giovanna Ambrosini (giovanna.ambrosini@isb-sib.ch) - problems with the databases: Victor Jongeneel (Victor.Jongeneel@isb-sib.ch) Laurent Falquet (Laurent.Falquet@isrec.unil.ch) ============================================================================ BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= consensus (92 letters) Database: /export/scratch/database/MYHITS2/sw.69 184,304 sequences; 66,619,967 total letters [blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file [blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sw:PO14_NASVI Retrovirus-related Pol polyprotein from type I ret... 55 2e-08 sw:PO11_SCICO Retrovirus-related Pol polyprotein from type I ret... 42 1e-04 sw:Y2R2_DROME Hypothetical 115 kDa protein in type I retrotransp... 39 0.001 sw:PO11_NASVI Retrovirus-related Pol polyprotein from type I ret... 39 0.002 sw:PO13_NASVI Retrovirus-related Pol polyprotein from type I ret... 37 0.005 sw:PO12_NASVI Retrovirus-related Pol polyprotein from type I ret... 34 0.064 sw:Y2143_SHEON Hypothetical transport protein SO2143. Shewanella... 32 0.20 >sw:PO14_NASVI Retrovirus-related Pol polyprotein from type I retrotransposable element R1 [Contains: Reverse transcriptase (EC 2.7.7.49); Endonuclease] (Fragment). Nasonia vitripennis (Parasitic wasp). Length = 392 Score = 55.5 bits (133), Expect = 2e-08 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDAR 62 YA+ W + R+L + R + I + +R+ SYE A VLAG LPIC+ + Sbjct: 151 YASARWYKE--GAHTDRILEDLHRQILIAITRCYRSTSYEAACVLAGTLPICIQLRVSVA 208 Query: 63 CYQRRAATGSSRAVIRKEERQATMEE 88 Y R + + R ++E Sbjct: 209 KYHLRKGEDAEIGGVVIRRRPEGLKE 234 >sw:PO11_SCICO Retrovirus-related Pol polyprotein from type I retrotransposable element R1 [Contains: Reverse transcriptase (EC 2.7.7.49); Endonuclease] (Fragment). Sciara coprophila (Fungus gnat). Length = 1004 Score = 42.4 bits (99), Expect = 1e-04 Identities = 21/57 (36%), Positives = 24/57 (42%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLV 57 + Y A VW L LL R QR + + RTVS E VL G LP L Sbjct: 768 MSYGASVWFRTLRFSYASILLNRCQRLVLYASLNVCRTVSTERMQVLHGELPWDLEA 824 >sw:Y2R2_DROME Hypothetical 115 kDa protein in type I retrotransposable element R1DM (ORF 2). Drosophila melanogaster (Fruit fly). Length = 1021 Score = 38.9 bits (90), Expect = 0.001 Identities = 20/67 (29%), Positives = 29/67 (43%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDAR 62 + APVW + + +R L QR + + S RTVS VL G P+ L A Sbjct: 794 FGAPVWYDTAEQVAAQRRLASCQRLILLGCLSVCRTVSTVALQVLGGAPPLDLAAKLLAI 853 Query: 63 CYQRRAA 69 Y+ + Sbjct: 854 KYKLKRG 860 >sw:PO11_NASVI Retrovirus-related Pol polyprotein from type I retrotransposable element R1 [Contains: Reverse transcriptase (EC 2.7.7.49); Endonuclease] (Fragment). Nasonia vitripennis (Parasitic wasp). Length = 337 Score = 38.5 bits (89), Expect = 0.002 Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 14/102 (13%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDAR 62 Y + VW E + + R + +QR RTVS E VL G LP L +D + Sbjct: 171 YGSSVWYEGMKYKTMRESMNSIQRCAMYACLRVCRTVSTEAMQVLLGWLPCDLECVKD-K 229 Query: 63 CYQ---RRAATGS----SRAVIRKEER------QATMEEWQQ 91 C Q S + K R + E WQ+ Sbjct: 230 CVQGSAWHRNDESDLVTDAEIAEKRARSCKLMKEREHEIWQR 271 >sw:PO13_NASVI Retrovirus-related Pol polyprotein from type I retrotransposable element R1 [Contains: Reverse transcriptase (EC 2.7.7.49); Endonuclease] (Fragment). Nasonia vitripennis (Parasitic wasp). Length = 383 Score = 37.4 bits (86), Expect = 0.005 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 12/70 (17%) Query: 3 YAAPVWAEAL---DLQECRRL---LRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLL 56 Y A VW E L L+ RRL L QR + RTVS E +L G LP Sbjct: 141 YGASVWYEQLHKRKLRGSRRLSEELVSCQRVVLYACTRVCRTVSTEAMQILFGSLPW--- 197 Query: 57 VDEDARCYQR 66 D C++R Sbjct: 198 ---DIECFRR 204 >sw:PO12_NASVI Retrovirus-related Pol polyprotein from type I retrotransposable element R1 [Contains: Reverse transcriptase (EC 2.7.7.49); Endonuclease] (Fragment). Nasonia vitripennis (Parasitic wasp). Length = 410 Score = 33.5 bits (76), Expect = 0.064 Identities = 24/83 (28%), Positives = 32/83 (38%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDAR 62 Y A W E L + R L R + + RTVS E VL G LP L + A Sbjct: 171 YCASAWYEVLKYEYGRNALSAAVRYVMYACLNVCRTVSTEAMQVLTGWLPWDLECLKRAN 230 Query: 63 CYQRRAATGSSRAVIRKEERQAT 85 Y+ R + + K E + Sbjct: 231 VYKVRKGLSMNEMDVVKNEEVES 253 >sw:Y2143_SHEON Hypothetical transport protein SO2143. Shewanella oneidensis. Length = 562 Score = 32.0 bits (72), Expect = 0.20 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 27 PLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDARCYQRRAATGSSRAVIRKEERQATM 86 P+A V F TV +A+VLA ++P L +D +A C A G + R E + Sbjct: 159 PVAYAVTYIFGTVG--SAIVLAQIIPKLLRIDLEAACKDYMAKNGGTTENARGEWHTYAL 216 Query: 87 EEWQ 90 ++ Sbjct: 217 RSYK 220 Database: /export/scratch/database/MYHITS2/sw.69 Posted date: Jun 15, 2005 7:24 PM Number of letters in database: 66,619,967 Number of sequences in database: 184,304 Lambda K H 0.313 0.170 0.526 Lambda K H 0.267 0.0511 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,410,295 Number of Sequences: 184304 Number of extensions: 784937 Number of successful extensions: 2714 Number of sequences better than 1.0: 9 Number of HSP's better than 1.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 2705 Number of HSP's gapped (non-prelim): 12 length of query: 92 length of database: 16,252,624 effective HSP length: 43 effective length of query: 49 effective length of database: 16,252,624 effective search space: 796378576 effective search space used: 796378576 T: 11 A: 40 X1: 15 ( 6.8 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.6 bits) S2: 66 (29.7 bits) SIB BLAST network server version 1.6 of November 26, 2002 compiled by GNU C version 3.2.3 20030502 (Red Hat Linux 3.2.3-49) compiled on Feb 1 2005. Welcome to the SIB BLAST Network Service (noko01) ============================================================================== Swiss Institute of Bioinformatics (SIB) Ludwig Institute for Cancer Research (LICR) Swiss Institute for Experimental Cancer Research (ISREC) ============================================================================== If results of this search are reported or published, please mention that the computation was performed at the SIB using the BLAST network service. PEPTIDE SEQUENCE DATABASES swiss SwissProt + updates 14-Jul-2004 swisstrembl SwissProt+Trembl+TrUpdates 14-Jul-2004 nr Non-redundant SP+Trembl+TrUpdates+gp 14-Jul-2004 shuffled SwissProt r30 shuffled in windows of 20 aa yeast S.cerevisiae translated genome ORFs NUCLEOTIDE SEQUENCE DATABASES embre * EMBL Data Library, Release 79, June 2004 embu * EmblUpdate 14-Jul-2004 embl * EMBL+EmblUpdate 14-Jul-2004 nr * Synonym to embl (and actually redundant). 14-Jul-2004 EST Database of Expressed Sequence Tags 14-Jul-2004 GSS Genome Survey Sequences 14-Jul-2004 HTG High-thruput Genomic Sequences 14-Jul-2004 STS Database of Sequence Tagged Sites 14-Jul-2004 repbase Repbase, August 04, 2002 simple Simple sequence repeats (J. Mol. Evol. 40:120, 1995) yeast S.cerevisiae genome worm C.elegans genome * The est, gss, htg, and sts divisions of EMBL are excluded from these databases. ============================================================================ The BLAST Network Service uses a server developed at SIB and the NCBI BLAST 2 software. For problems regarding this site, please contact one of the following persons: - problems with the programs: Christian Iseli (Christian.Iseli@licr.org) Giovanna Ambrosini (giovanna.ambrosini@isb-sib.ch) - problems with the databases: Victor Jongeneel (Victor.Jongeneel@isb-sib.ch) Laurent Falquet (Laurent.Falquet@isrec.unil.ch) ============================================================================ BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= consensus (92 letters) Database: /export/scratch/database/MYHITS2/tr.66 1,779,481 sequences; 567,248,508 total letters [blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file [blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr:Q868R6_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 141 3e-34 tr:Q868S0_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 141 5e-34 tr:Q868R0_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 140 7e-34 tr:Q868S6_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 140 9e-34 tr:Q868R2_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 138 4e-33 tr:Q868Q6_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 136 9e-33 tr:Q868S2_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 132 3e-31 tr:Q868S8_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 130 6e-31 tr:Q868R4_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 130 6e-31 tr:Q868Q8_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 130 6e-31 tr:Q5TRT9_ANOGA ENSANGP00000026139. Anopheles gambiae str. PEST. 130 8e-31 tr:Q868T0_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 129 2e-30 tr:Q868R8_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 127 4e-30 tr:Q868S4_ANOGA Reverse transcriptase. Anopheles gambiae (Africa... 127 8e-30 tr:Q5TRE0_ANOGA ENSANGP00000029628. Anopheles gambiae str. PEST. 119 2e-27 tr:Q868Q4_BOMMO Reverse transcriptase. Bombyx mori (Silk moth). 107 4e-24 tr:Q6XMP6_AEDAL Reverse transcriptase (Fragment). Aedes albopict... 95 5e-20 tr:Q5TRT5_ANOGA ENSANGP00000028602. Anopheles gambiae str. PEST. 91 9e-19 tr:Q8MY33_9NEOP Reverse transcriptase. Papilio xuthus. 82 2e-16 tr:Q8MY31_9NEOP Reverse transcriptase. Papilio xuthus. 82 2e-16 tr:Q8MY35_9NEOP Reverse transcrpitase. Papilio xuthus. 82 4e-16 tr:Q8MY27_9NEOP Reverse transcriptase. Papilio xuthus. 78 4e-15 tr:O01419_BOMMO Pol protein. Bombyx mori (Silk moth). 74 8e-14 tr:Q5KTM7_BOMMO Reverse transcriptase (Fragment). Bombyx mori (S... 73 2e-13 tr:Q93139_BOMMO ORF2. Bombyx mori (Silk moth). 55 3e-08 tr:Q9BLI5_BOMMO TRAS3 protein. Bombyx mori (Silk moth). 55 3e-08 tr:Q9N9Z1_DROME Endonuclease/reverse transcriptase. Drosophila m... 55 5e-08 tr:O44317_9ARAC Reverse transcriptase (Fragment). Dugesiella sp. 51 6e-07 tr:Q9NBJ2_9DIPT Reverse transcriptase (Fragment). Drosophila cur... 41 6e-04 tr:Q9NBJ1_9DIPT Reverse transcriptase (Fragment). Drosophila fal... 40 0.001 tr:Q9NBJ3_9DIPT Reverse transcriptase (Fragment). Drosophila bra... 39 0.002 tr:Q9NBJ0_9DIPT Reverse transcriptase (Fragment). Drosophila neo... 38 0.004 tr:Q9NBI6_9DIPT Reverse transcriptase (Fragment). Drosophila pal... 38 0.006 tr:Q9NBI4_9DIPT Reverse transcriptase (Fragment). Drosophila qui... 37 0.013 tr:Q9NBI9_9DIPT Reverse transcriptase (Fragment). Drosophila neo... 36 0.018 tr:Q9NBI8_9DIPT Reverse transcriptase (Fragment). Drosophila ori... 36 0.019 tr:Q9NBI2_9DIPT Reverse transcriptase (Fragment). Drosophila rec... 36 0.022 tr:Q9NBH9_9DIPT Reverse transcriptase (Fragment). Drosophila tes... 36 0.024 tr:Q9NBI7_9DIPT Reverse transcriptase (Fragment). Drosophila ori... 36 0.026 tr:Q5NTZ0_BOMMO Non-LTR retrotransposon R1Bmks ORF2 protein. Bom... 35 0.031 tr:Q7M4J4_BOMMO RNA-directed DNA polymerase (EC 2.7.7.49) homolo... 35 0.033 tr:Q9NBI0_9DIPT Reverse transcriptase (Fragment). Drosophila tes... 34 0.069 tr:Q9NBI5_9DIPT Reverse transcriptase (Fragment). Drosophila pal... 34 0.12 tr:Q7YZX7_TRYCR Hypothetical protein. Trypanosoma cruzi. 33 0.14 tr:Q93QV4_BACFR Putative transporter. Bacteroides fragilis. 33 0.19 tr:Q64WC8_BACFR Putative transporter. Bacteroides fragilis. 33 0.19 tr:Q9NBI3_9DIPT Reverse transcriptase (Fragment). Drosophila qui... 33 0.20 tr:Q9Y027_TRYCR Reverse transcriptase (Fragment). Trypanosoma cr... 32 0.27 tr:Q9NBI1_9DIPT Reverse transcriptase (Fragment). Drosophila rec... 31 0.60 tr:O46185_DROSU Putative reverse transcriptase (Fragment). Droso... 31 0.73 tr:Q603J2_METCA 4Fe-4S binding domain protein. Methylococcus cap... 31 0.74 >tr:Q868R6_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1022 Score = 141 bits (357), Expect = 3e-34 Identities = 43/92 (46%), Positives = 62/92 (67%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDED 60 IRYA+ +WAE+L + ++ LRR RPL RV SAFR+ S++ A V+AG++P+ +L+DED Sbjct: 771 IRYASSIWAESLKFECRKQWLRRCHRPLVNRVISAFRSTSHDAACVIAGMMPLHILIDED 830 Query: 61 ARCYQRRAATGSSRAVIRKEERQATMEEWQQE 92 R QR TG S + R ER ++E WQ+E Sbjct: 831 YRVRQRSITTGVSSKLARIAERPYSVEAWQRE 862 >tr:Q868S0_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1009 Score = 141 bits (355), Expect = 5e-34 Identities = 43/92 (46%), Positives = 60/92 (65%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDED 60 +RYA+P+W L R+ LRR RP+ RV S+FRT S++ VLAG++P+ LL+DED Sbjct: 766 VRYASPIWCHTLRFANRRQWLRRFYRPVVQRVISSFRTTSHDAVCVLAGMIPLHLLLDED 825 Query: 61 ARCYQRRAATGSSRAVIRKEERQATMEEWQQE 92 +R + RR A + +V R ER TME WQ+E Sbjct: 826 SRTFHRRRAENIAGSVARNMERVTTMERWQRE 857 >tr:Q868R0_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1173 Score = 140 bits (354), Expect = 7e-34 Identities = 58/94 (61%), Positives = 72/94 (76%), Gaps = 2/94 (2%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDED 60 +RYAAPVW EA QECRR+L+RVQ+ AI+V+SAF TV Y+TAVVLA ++PICLLV ED Sbjct: 808 LRYAAPVWHEATKNQECRRMLQRVQKHCAIKVSSAFPTVRYQTAVVLASMIPICLLVQED 867 Query: 61 ARCYQRR--AATGSSRAVIRKEERQATMEEWQQE 92 ARCYQR+ A S ++R EER TM+ WQ+E Sbjct: 868 ARCYQRQQEAGGALSAGILRAEERINTMQSWQEE 901 >tr:Q868S6_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1049 Score = 140 bits (353), Expect = 9e-34 Identities = 37/92 (40%), Positives = 61/92 (66%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDED 60 +RY APVWA L ++ + + +V R LA+RV SA+RT+SYE V+A ++P+C+ ++ED Sbjct: 823 LRYGAPVWAHILKEKQHQNTVNKVHRKLAMRVTSAYRTISYEAVCVIASMMPLCITLEED 882 Query: 61 ARCYQRRAATGSSRAVIRKEERQATMEEWQQE 92 ++ +++ A S +K RQA+M +WQ E Sbjct: 883 SKNFRKSRAGESFTETAKKASRQASMRQWQNE 914 >tr:Q868R2_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1168 Score = 138 bits (348), Expect = 4e-33 Identities = 54/93 (58%), Positives = 67/93 (72%), Gaps = 1/93 (1%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDED 60 IRY APVW EA DLQ CRR+L RVQR LA + SAF + S E AVVLAG LP LL ED Sbjct: 797 IRYGAPVWTEATDLQWCRRILDRVQRLLAQGITSAFHSTSCEVAVVLAGELPYHLLAKED 856 Query: 61 ARCYQR-RAATGSSRAVIRKEERQATMEEWQQE 92 ARCY R +++ SSR IR+EE++ +++ WQQ+ Sbjct: 857 ARCYNRQQSSPDSSREAIRQEEKETSLQLWQQQ 889 >tr:Q868Q6_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1248 Score = 136 bits (344), Expect = 9e-33 Identities = 53/93 (56%), Positives = 67/93 (72%), Gaps = 1/93 (1%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDED 60 IRY AP+WAEA D Q C+R+L QRPLA RV FR++SY AV++ L+P LL+ ED Sbjct: 791 IRYGAPIWAEATDRQWCQRMLASFQRPLAQRVVCGFRSISYSVAVLMPRLIPHPLLIKED 850 Query: 61 ARCYQRRAA-TGSSRAVIRKEERQATMEEWQQE 92 ARC+QR A +SRAVIR+EER T+E WQ+E Sbjct: 851 ARCHQRYLADPEASRAVIRREERAVTLEVWQRE 883 >tr:Q868S2_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1201 Score = 132 bits (332), Expect = 3e-31 Identities = 60/90 (66%), Positives = 69/90 (76%), Gaps = 2/90 (2%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDED 60 +RYAAPVW EA+ QEC RLLRRVQR AI +A FRTV YETAV+LAGLLPICL + ED Sbjct: 863 MRYAAPVWHEAIGNQECCRLLRRVQRKSAIGLARTFRTVRYETAVLLAGLLPICLAIKED 922 Query: 61 ARCYQRRAATGSSRAVIRKEERQATMEEWQ 90 R + RR TG + A IR+EERQ +MEEWQ Sbjct: 923 TRVHSRR-GTGLNCA-IRREERQRSMEEWQ 950 >tr:Q868S8_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1099 Score = 130 bits (328), Expect = 6e-31 Identities = 61/94 (64%), Positives = 75/94 (79%), Gaps = 2/94 (2%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDED 60 +RYAAPVW++ L +E RLL RVQR +A+RVA AFRTV YETA +LAGL PICLL+DED Sbjct: 787 MRYAAPVWSKELQKREPGRLLERVQRKMALRVARAFRTVRYETATLLAGLTPICLLLDED 846 Query: 61 ARCYQRRAA--TGSSRAVIRKEERQATMEEWQQE 92 AR YQR +A +RA IRK+ERQAT+E+WQQ+ Sbjct: 847 ARVYQRLSAVNRTDTRANIRKQERQATIEQWQQQ 880 >tr:Q868R4_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1222 Score = 130 bits (328), Expect = 6e-31 Identities = 59/92 (64%), Positives = 71/92 (77%), Gaps = 1/92 (1%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDED 60 IRYAAPVW+EA DLQ C+R L +VQRPLA V S+F +V+YET V LAGL+P LLV ED Sbjct: 794 IRYAAPVWSEATDLQWCQRKLAQVQRPLARGVTSSFVSVAYETGVALAGLVPFRLLVRED 853 Query: 61 ARCYQR-RAATGSSRAVIRKEERQATMEEWQQ 91 ARC++R AA G+SR IR EERQ T +EWQ+ Sbjct: 854 ARCHRRLLAAPGASRKDIRLEERQGTFQEWQR 885 >tr:Q868Q8_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1154 Score = 130 bits (328), Expect = 6e-31 Identities = 58/90 (64%), Positives = 67/90 (74%), Gaps = 1/90 (1%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDED 60 +RYAAPVW AL +ECR LL+RVQR AIRVA FRTV YETAV+ AGL+PIC V ED Sbjct: 802 MRYAAPVWHGALTNRECRSLLKRVQRKAAIRVARTFRTVRYETAVLPAGLVPICRAVAED 861 Query: 61 ARCYQRRAATGSSRAVIRKEERQATMEEWQ 90 R + RR TG S + +RKEERQ T+EEWQ Sbjct: 862 TRVHSRR-GTGVSSSELRKEERQRTIEEWQ 890 >tr:Q5TRT9_ANOGA ENSANGP00000026139. Anopheles gambiae str. PEST. Length = 1221 Score = 130 bits (327), Expect = 8e-31 Identities = 59/92 (64%), Positives = 72/92 (78%), Gaps = 1/92 (1%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDED 60 IRYAAPVW++A DLQ CRR L +VQRPLA V S+F +V+YET VVLAGL+P LLV ED Sbjct: 793 IRYAAPVWSDATDLQWCRRKLAQVQRPLARGVTSSFVSVAYETGVVLAGLVPFRLLVRED 852 Query: 61 ARCYQR-RAATGSSRAVIRKEERQATMEEWQQ 91 RC++R AA G+SR IR EERQ T++EWQ+ Sbjct: 853 VRCHRRLLAAPGASRKDIRLEERQRTLQEWQR 884 >tr:Q868T0_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 1173 Score = 129 bits (324), Expect = 2e-30 Identities = 56/90 (62%), Positives = 67/90 (74%), Gaps = 2/90 (2%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDED 60 +RYAAPVW EAL+ +ECRRLL RVQR AI VA FRTV YETAV+LAGLLPIC + ED Sbjct: 807 MRYAAPVWHEALNTRECRRLLERVQRKSAIAVARTFRTVRYETAVLLAGLLPICRAICED 866 Query: 61 ARCYQRRAATGSSRAVIRKEERQATMEEWQ 90 R + RR ++ A +RKEER+ T+ EWQ Sbjct: 867 TRVHSRR--GTAAGAQLRKEERETTIAEWQ 894 >tr:Q868R8_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 988 Score = 127 bits (321), Expect = 4e-30 Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 1/93 (1%) Query: 1 IRYAAPVWAE-ALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDE 59 IRY W LD + R+ ++R RP A+RVASAF+TVSY+ A V+A P+ LL+ E Sbjct: 783 IRYGVATWGRWVLDKETHRKSVQRAHRPGALRVASAFQTVSYDAACVVANTTPLVLLMQE 842 Query: 60 DARCYQRRAATGSSRAVIRKEERQATMEEWQQE 92 D RC + A+G ++ IRK +R+ TM WQ + Sbjct: 843 DIRCQDEKVASGGVQSDIRKRQREETMRRWQDQ 875 >tr:Q868S4_ANOGA Reverse transcriptase. Anopheles gambiae (African malaria mosquito). Length = 973 Score = 127 bits (319), Expect = 8e-30 Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 2/92 (2%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDED 60 +RY A +WA L L+E R+L RV R LA+RV A++T+S+ V+A ++PICL++ ED Sbjct: 762 LRYNAAIWAHVLVLKENRQLANRVHRLLAMRVVRAYKTISHVAVCVIASMVPICLILAED 821 Query: 61 ARCYQRRAATGSSRAVIRKEERQATMEEWQQE 92 + C + S+ + R +Q +M +WQ E Sbjct: 822 SECC--SFSGVSNAGLSRSSAKQLSMRKWQSE 851 >tr:Q5TRE0_ANOGA ENSANGP00000029628. Anopheles gambiae str. PEST. Length = 559 Score = 119 bits (298), Expect = 2e-27 Identities = 51/93 (54%), Positives = 65/93 (69%), Gaps = 1/93 (1%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDED 60 IRY AP+W EA + Q C R+L QR LA RV S FR++SY AV++AGL+P L+ ED Sbjct: 169 IRYGAPIWVEATERQWCLRMLASAQRHLAQRVVSGFRSMSYSVAVLMAGLIPHHHLIRED 228 Query: 61 ARCYQRRAA-TGSSRAVIRKEERQATMEEWQQE 92 ARC+QR A T +SR VIR+EER T+ WQ+E Sbjct: 229 ARCHQRYLADTEASRVVIRREERAVTLAAWQRE 261 >tr:Q868Q4_BOMMO Reverse transcriptase. Bombyx mori (Silk moth). Length = 1076 Score = 107 bits (269), Expect = 4e-24 Identities = 35/92 (38%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDAR 62 Y APVWAE + R LRR QR +AIRV +RTVS+E A VLAG P L + A Sbjct: 821 YGAPVWAEPRNRATMARFLRRPQRTVAIRVIRGYRTVSFEAACVLAGTPPWELEAESLAA 880 Query: 63 CYQRR--AATGSSRAVIRKEERQATMEEWQQE 92 Y+ R V E R + Sbjct: 881 DYRWRSELRARGVARVPESELRARKAHSRRSV 912 >tr:Q6XMP6_AEDAL Reverse transcriptase (Fragment). Aedes albopictus (Forest day mosquito). Length = 248 Score = 94.8 bits (235), Expect = 5e-20 Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 5/92 (5%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDED 60 +RY P WA AL + R L V R +A+RVASA+RT+S E V+AG++PIC+ ++ED Sbjct: 89 LRYGVPAWAPALKTKRNRGRLGSVFRLMAMRVASAYRTISSEAVCVIAGMMPICITLEED 148 Query: 61 ARCYQRRAATGSSRAVIRKEERQATMEEWQQE 92 C +R S+ R R ++ +WQQE Sbjct: 149 VECCRR-----SNVRNARAAARMDSLVKWQQE 175 >tr:Q5TRT5_ANOGA ENSANGP00000028602. Anopheles gambiae str. PEST. Length = 267 Score = 90.5 bits (224), Expect = 9e-19 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 1 IRYAAPVWAE-ALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDE 59 IRY W LD + R+ ++R RP A+R+ SAF+TVSY+ V+A + LL+ E Sbjct: 149 IRYGVATWGRWVLDKETHRKSVQRAHRPGALRITSAFQTVSYDAVCVVANTTRLVLLMQE 208 Query: 60 DARCYQRRAATG 71 D RC+ + TG Sbjct: 209 DIRCHDDKLLTG 220 >tr:Q8MY33_9NEOP Reverse transcriptase. Papilio xuthus. Length = 1053 Score = 82.5 bits (203), Expect = 2e-16 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 10/98 (10%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDAR 62 Y APVW+ AL+ + +L R QR +AIR+ +RTVSY+ A LAG LP L + A Sbjct: 799 YGAPVWSGALNSRT-TEILHRPQRTMAIRMIRGYRTVSYDAACTLAGSLPWVLEAEILAA 857 Query: 63 CYQRR---AATGSS------RAVIRKEERQATMEEWQQ 91 + R T + RKE R+ + +WQ+ Sbjct: 858 IHTWRELKITTDGAPPLRVEVEAFRKERREEAVSKWQR 895 >tr:Q8MY31_9NEOP Reverse transcriptase. Papilio xuthus. Length = 1053 Score = 82.1 bits (202), Expect = 2e-16 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 10/98 (10%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDAR 62 Y APVW+ AL+ + +L R QR +AIR+ +RTVSY+ A LAG LP L + A Sbjct: 799 YGAPVWSGALNSRT-TEILHRPQRTMAIRMIRGYRTVSYDAACTLAGSLPWVLEAEILAA 857 Query: 63 CYQRR---AATGSS------RAVIRKEERQATMEEWQQ 91 + R T + RKE R+ + +WQ+ Sbjct: 858 IHTWRELKITTDGAPPLRVEVEAFRKERREEAVSKWQR 895 >tr:Q8MY35_9NEOP Reverse transcrpitase. Papilio xuthus. Length = 1053 Score = 81.7 bits (201), Expect = 4e-16 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 10/98 (10%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDAR 62 Y APVW+ AL+ + +L R QR +AIR+ +RTVSY+ A LAG LP L + A Sbjct: 799 YGAPVWSGALNSRT-TEILHRPQRTMAIRMIRGYRTVSYDAACTLAGSLPWVLEAEILAA 857 Query: 63 CYQRR---AATGSS------RAVIRKEERQATMEEWQQ 91 + R T + RKE R+ + +WQ+ Sbjct: 858 IHTWRELKITTDGAPPLRVEVEAFRKERREEAVPKWQR 895 >tr:Q8MY27_9NEOP Reverse transcriptase. Papilio xuthus. Length = 1053 Score = 78.2 bits (192), Expect = 4e-15 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 10/98 (10%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDAR 62 Y APVW+ AL+ + +L R QR +AIR +RTVSY+ A LAG LP L + A Sbjct: 799 YGAPVWSGALNSRTI-DVLHRPQRTMAIRAIRGYRTVSYDAACTLAGSLPWVLEAEVLAA 857 Query: 63 CYQRRAATGSSRAVI---------RKEERQATMEEWQQ 91 ++ R R+ R+A + W++ Sbjct: 858 VHEWRERKTLIDGAPPLRVEVENFRRTRREAAVTSWER 895 >tr:O01419_BOMMO Pol protein. Bombyx mori (Silk moth). Length = 1067 Score = 74.0 bits (181), Expect = 8e-14 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDAR 62 Y APVW+ L + LL+RVQR LA+RV +RT+S E A LAG LP + A Sbjct: 808 YGAPVWSPTLSARNAA-LLQRVQRVLAVRVVRGYRTISTEVACALAGSLPWEYEAEVLAA 866 Query: 63 CYQRRAATGSSRAVIR 78 Y+RRA + +V R Sbjct: 867 VYRRRAQSLGRGSVPR 882 >tr:Q5KTM7_BOMMO Reverse transcriptase (Fragment). Bombyx mori (Silk moth). Length = 321 Score = 72.8 bits (178), Expect = 2e-13 Identities = 34/91 (37%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDAR 62 Y APVW AL LRR QR +A+R +RTVS+E A VLAG P L + A Sbjct: 64 YGAPVWCHALTRDNVAA-LRRPQRAIAVRAVRGYRTVSFEAACVLAGTPPWDLEAEALAA 122 Query: 63 CYQRRAATGSSRAVIR---KEERQATMEEWQ 90 Y R SR R E R ++ + Sbjct: 123 DYAWRCDLR-SRGEPRPGAAEVRARKLQSRR 152 >tr:Q93139_BOMMO ORF2. Bombyx mori (Silk moth). Length = 1162 Score = 55.5 bits (133), Expect = 3e-08 Identities = 24/59 (40%), Positives = 38/59 (64%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDA 61 YAA VW E++ ++ L +QR A ++ A+RTVS +A+++AG+LP+ L V E A Sbjct: 772 YAAAVWHESVYKLGVQKQLNVIQRGFAQKLCRAYRTVSLNSALLMAGILPLDLRVREAA 830 >tr:Q9BLI5_BOMMO TRAS3 protein. Bombyx mori (Silk moth). Length = 1682 Score = 55.5 bits (133), Expect = 3e-08 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 3/81 (3%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDAR 62 YAA VW A+ + L VQR +A +V A+RTVS +A++LAG+LP+ L V E A Sbjct: 1283 YAASVWVSAVAKLGVIKQLAAVQRGIAQKVCKAYRTVSLNSALILAGMLPLDLRVREAAS 1342 Query: 63 CYQRRAA---TGSSRAVIRKE 80 Y+ + G + A I + Sbjct: 1343 LYEAKKGQLLPGLADAEIEQM 1363 >tr:Q9N9Z1_DROME Endonuclease/reverse transcriptase. Drosophila melanogaster (Fruit fly). Length = 989 Score = 54.7 bits (131), Expect = 5e-08 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDAR 62 YAAP+W+ + R V R +A+R+ FRT+S + A L+G+ PI L + Sbjct: 776 YAAPIWSCVSTKKTYLDSARAVSRTMALRLIRGFRTISDDAAHALSGITPIDLDIKGKY- 834 Query: 63 CYQRRAATGSSRAVIRKEERQATMEEWQQ 91 A+ G ++ I++ R WQ+ Sbjct: 835 ----LASEGYTQLEIKEWIRGVWQTRWQE 859 >tr:O44317_9ARAC Reverse transcriptase (Fragment). Dugesiella sp. Length = 488 Score = 50.9 bits (121), Expect = 6e-07 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDED 60 I Y A W +AL E ++ L +QR + + V A+RT S E V+A + P+ L++ + Sbjct: 131 ISYGANTWTKALGSVE-KKKLNSLQRTMLLSVTEAYRTTSTEAMQVIANITPLDLILRAE 189 Query: 61 AR 62 ++ Sbjct: 190 SK 191 >tr:Q9NBJ2_9DIPT Reverse transcriptase (Fragment). Drosophila curvispina. Length = 353 Score = 41.2 bits (96), Expect = 6e-04 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 3 YAAPVWAEALDLQ-ECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDA 61 + + VW D Q RR L QR + + RTVS VLAG P L + A Sbjct: 113 FGSSVWHGTTDRQIVSRRKLTACQRLILLGCLPVCRTVSTAALQVLAGAPPFDLEAKKLA 172 Query: 62 RCYQRRAA 69 Y + Sbjct: 173 IKYNLKRD 180 >tr:Q9NBJ1_9DIPT Reverse transcriptase (Fragment). Drosophila falleni. Length = 366 Score = 40.1 bits (93), Expect = 0.001 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 3 YAAPVWAEALDLQ-ECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDA 61 + A VW D Q RR L QR + + RTVS VLAG P L + A Sbjct: 126 FGASVWHGTTDRQIVARRTLIACQRLILLGCLPVCRTVSTAALQVLAGAPPFDLEAKKMA 185 >tr:Q9NBJ3_9DIPT Reverse transcriptase (Fragment). Drosophila brachynephros. Length = 366 Score = 39.3 bits (91), Expect = 0.002 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 3 YAAPVWAEALDLQ-ECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDA 61 + + VW D Q RR L QR + + RTVS VLAG P L + A Sbjct: 126 FGSSVWHGTTDRQIVARRKLIACQRLILLGYLPVCRTVSTAALQVLAGAPPFDLEAKKLA 185 >tr:Q9NBJ0_9DIPT Reverse transcriptase (Fragment). Drosophila neotestacea. Length = 377 Score = 38.2 bits (88), Expect = 0.004 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 3 YAAPVWAEALDLQ-ECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDA 61 + A VW D ++ L R QR + + RTVS VLAG P L + A Sbjct: 126 FGASVWYRTTDRGVTAKKRLIRCQRLILLGCLPVCRTVSTVALQVLAGAPPFDLAAKKLA 185 >tr:Q9NBI6_9DIPT Reverse transcriptase (Fragment). Drosophila palustris. Length = 366 Score = 37.8 bits (87), Expect = 0.006 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 3 YAAPVWAEALDLQE-CRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDA 61 + A VW D Q R+ L QR + + RTVS VLAG P L + A Sbjct: 126 FGASVWYGLTDRQTGARKQLNACQRVILLGCLPVCRTVSTLALQVLAGAPPFDLAAKKLA 185 >tr:Q9NBI4_9DIPT Reverse transcriptase (Fragment). Drosophila quinaria. Length = 366 Score = 36.6 bits (84), Expect = 0.013 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%) Query: 3 YAAPVWAEALDLQECRRL-LRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDA 61 + A VW D Q R L Q + + RTVS VLAG P L + A Sbjct: 126 FGASVWHGLTDRQTGARKHLNACQTVILLGCLPVCRTVSTLALQVLAGAPPFDLAAKKLA 185 >tr:Q9NBI9_9DIPT Reverse transcriptase (Fragment). Drosophila neotestacea. Length = 358 Score = 36.2 bits (83), Expect = 0.018 Identities = 18/56 (32%), Positives = 26/56 (46%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVD 58 Y + VW +A+ R+ + QR + RTVS E VL G+ P+ L V Sbjct: 126 YGSSVWCDAVTTVVGRKKVLACQRVTMMGCMPVCRTVSTEAMQVLLGVPPLDLEVR 181 >tr:Q9NBI8_9DIPT Reverse transcriptase (Fragment). Drosophila orientacea. Length = 379 Score = 36.2 bits (83), Expect = 0.019 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 3 YAAPVWAEALDLQ-ECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDA 61 + A VW D ++ L + QR + + RTVS VLAG P L + A Sbjct: 126 FGASVWYRMTDRGVTAKKRLIQCQRLILLGCLPVCRTVSTVALQVLAGAPPFDLAAKKLA 185 >tr:Q9NBI2_9DIPT Reverse transcriptase (Fragment). Drosophila recens. Length = 366 Score = 35.9 bits (82), Expect = 0.022 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 3 YAAPVWAEALDLQE-CRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDA 61 + A VW D + + L + QR + + RTVS VLAG P L ++ A Sbjct: 126 FGASVWHGVTDRRVVPKANLIKCQRLILLGCLPVCRTVSTLALQVLAGAPPFDLAANKLA 185 >tr:Q9NBH9_9DIPT Reverse transcriptase (Fragment). Drosophila testacea. Length = 358 Score = 35.9 bits (82), Expect = 0.024 Identities = 18/56 (32%), Positives = 26/56 (46%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVD 58 Y + VW +A+ R+ + QR + RTVS E VL G+ P+ L V Sbjct: 126 YGSSVWCDAVTTVVGRKKVLACQRVTMMGCMPVCRTVSTEAMQVLLGVPPLDLEVR 181 >tr:Q9NBI7_9DIPT Reverse transcriptase (Fragment). Drosophila orientacea. Length = 358 Score = 35.9 bits (82), Expect = 0.026 Identities = 18/56 (32%), Positives = 26/56 (46%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVD 58 Y + VW +A+ R+ + QR + RTVS E VL G+ P+ L V Sbjct: 126 YGSSVWCDAVTTVVGRKKVLACQRVTMMGCMPVCRTVSTEAMQVLLGVPPLDLEVR 181 >tr:Q5NTZ0_BOMMO Non-LTR retrotransposon R1Bmks ORF2 protein. Bombyx mori (Silk moth). Length = 1035 Score = 35.5 bits (81), Expect = 0.031 Identities = 22/57 (38%), Positives = 29/57 (50%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLV 57 + YAA VW + R +L R QRP + A+R+ S VLAG+LP L V Sbjct: 807 LTYAAAVWYLRAAVHVVRSVLLRTQRPSLTLLTKAYRSCSTAALPVLAGVLPADLEV 863 >tr:Q7M4J4_BOMMO RNA-directed DNA polymerase (EC 2.7.7.49) homolog (R1). Bombyx mori (Silk moth). Length = 1051 Score = 35.5 bits (81), Expect = 0.033 Identities = 22/57 (38%), Positives = 29/57 (50%) Query: 1 IRYAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLV 57 + YAA VW + R +L R QRP + A+R+ S VLAG+LP L V Sbjct: 810 LTYAAAVWYLRAAVHVVRSVLLRTQRPSLTLLTKAYRSCSTAALPVLAGVLPADLEV 866 >tr:Q9NBI0_9DIPT Reverse transcriptase (Fragment). Drosophila testacea. Length = 378 Score = 34.3 bits (78), Expect = 0.069 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 3 YAAPVWAEALDLQ-ECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDA 61 + A VW D ++ + + QR + + RTVS VLAG P L + A Sbjct: 126 FGASVWYRMTDRGVTAKKRIIQCQRLILLGCLPVCRTVSTVALQVLAGAPPFDLAAKKLA 185 >tr:Q9NBI5_9DIPT Reverse transcriptase (Fragment). Drosophila palustris. Length = 359 Score = 33.5 bits (76), Expect = 0.12 Identities = 18/56 (32%), Positives = 25/56 (44%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVD 58 Y + VW A+ R + QR + + RTVS E VL G+ P+ L V Sbjct: 126 YGSSVWCSAVTTVAGRAKVLACQRVIMLGCMPVCRTVSTEAMQVLLGVTPLDLEVR 181 >tr:Q7YZX7_TRYCR Hypothetical protein. Trypanosoma cruzi. Length = 342 Score = 33.2 bits (75), Expect = 0.14 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Query: 1 IRYAAP-VWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLL--- 56 +RY + +WA A D + +++ LA V+ TV E+A++ A + P+ +L Sbjct: 199 LRYGSELIWAVATDSA--KNEMQKTYATLARIVSGVPSTVDPESALLEANMPPLHVLCLR 256 Query: 57 ----VDEDARCYQ 65 + E+ R Q Sbjct: 257 ARLSIFENTRACQ 269 >tr:Q93QV4_BACFR Putative transporter. Bacteroides fragilis. Length = 621 Score = 32.8 bits (74), Expect = 0.19 Identities = 10/27 (37%), Positives = 22/27 (81%) Query: 32 VASAFRTVSYETAVVLAGLLPICLLVD 58 V A++T+++E+ V++AG+LP+ L ++ Sbjct: 469 VEEAYKTINWESIVLIAGMLPMSLALE 495 >tr:Q64WC8_BACFR Putative transporter. Bacteroides fragilis. Length = 621 Score = 32.8 bits (74), Expect = 0.19 Identities = 10/27 (37%), Positives = 22/27 (81%) Query: 32 VASAFRTVSYETAVVLAGLLPICLLVD 58 V A++T+++E+ V++AG+LP+ L ++ Sbjct: 469 VEEAYKTINWESIVLIAGMLPMSLALE 495 >tr:Q9NBI3_9DIPT Reverse transcriptase (Fragment). Drosophila quinaria. Length = 359 Score = 32.8 bits (74), Expect = 0.20 Identities = 18/56 (32%), Positives = 25/56 (44%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVD 58 Y + VW A+ R + QR + + RTVS E VL G +P+ L V Sbjct: 126 YGSSVWCSAVTSVVGRAKVLACQRVIQLGCMPVCRTVSTEAMQVLLGCIPLELEVR 181 >tr:Q9Y027_TRYCR Reverse transcriptase (Fragment). Trypanosoma cruzi. Length = 608 Score = 32.4 bits (73), Expect = 0.27 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Query: 1 IRYAAP-VWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLL--- 56 +RY + +WA A D + +++ LA V+ TV E+A++ A + P+ +L Sbjct: 452 LRYGSELIWAVATDSA--KNEMQKTYATLARIVSGVPSTVDPESALLEANMPPLHVLCLR 509 Query: 57 ----VDEDARCYQ 65 + E+ R Q Sbjct: 510 ARLSIFENTRACQ 522 >tr:Q9NBI1_9DIPT Reverse transcriptase (Fragment). Drosophila recens. Length = 359 Score = 31.2 bits (70), Expect = 0.60 Identities = 18/67 (26%), Positives = 28/67 (41%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDAR 62 Y + VW + R + QR + + RTVS E VL G+ P+ L V A Sbjct: 126 YGSSVWCSGVTSVVGRAKVLACQRVIMLGCMPVCRTVSTEAMQVLLGVTPLDLEVRRRAI 185 Query: 63 CYQRRAA 69 ++ + Sbjct: 186 VFKIKRR 192 >tr:O46185_DROSU Putative reverse transcriptase (Fragment). Drosophila subobscura (Fruit fly). Length = 675 Score = 30.8 bits (69), Expect = 0.73 Identities = 16/60 (26%), Positives = 23/60 (38%) Query: 3 YAAPVWAEALDLQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDAR 62 Y VW AL + L +VQR A+ ++ A T + + L L E A Sbjct: 269 YGVTVWWTALSKGTITKQLSKVQRTAALSISGALSTTPTDALNAILCLQSPELAGKEQAE 328 >tr:Q603J2_METCA 4Fe-4S binding domain protein. Methylococcus capsulatus. Length = 450 Score = 30.8 bits (69), Expect = 0.74 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 18/74 (24%) Query: 14 LQECRRLLRRVQRPLAIRVASAFRTVSYETAVVLAGLLPICLLVDEDARCYQRRAATGSS 73 L++ RR + V RPL + ET V+AG DA + RR S Sbjct: 294 LEDRRRFIAEVMRPLQDK---------SETVYVIAG---------SDAEDHVRRRFPHKS 335 Query: 74 RAVIRKEERQATME 87 +R R ++ Sbjct: 336 AKRVRNTLRPTSIR 349 Database: /export/scratch/database/MYHITS2/tr.66 Posted date: Jun 13, 2005 6:40 PM Number of letters in database: 567,248,508 Number of sequences in database: 1,779,481 Lambda K H 0.313 0.170 0.526 Lambda K H 0.267 0.0511 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 140,471,883 Number of Sequences: 1779481 Number of extensions: 6703884 Number of successful extensions: 26849 Number of sequences better than 1.0: 74 Number of HSP's better than 1.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 37 Number of HSP's that attempted gapping in prelim test: 26759 Number of HSP's gapped (non-prelim): 95 length of query: 92 length of database: 16,252,624 effective HSP length: 6 effective length of query: 86 effective length of database: 16,252,624 effective search space: 1397725664 effective search space used: 1397725664 T: 11 A: 40 X1: 15 ( 6.8 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.6 bits) S2: 68 (30.5 bits)