SIB BLAST network server version 1.6 of November 26, 2002 compiled by GNU C version 3.2.3 20030502 (Red Hat Linux 3.2.3-49) compiled on Feb 1 2005. Welcome to the SIB BLAST Network Service (noko01) ============================================================================== Swiss Institute of Bioinformatics (SIB) Ludwig Institute for Cancer Research (LICR) Swiss Institute for Experimental Cancer Research (ISREC) ============================================================================== If results of this search are reported or published, please mention that the computation was performed at the SIB using the BLAST network service. PEPTIDE SEQUENCE DATABASES swiss SwissProt + updates 14-Jul-2004 swisstrembl SwissProt+Trembl+TrUpdates 14-Jul-2004 nr Non-redundant SP+Trembl+TrUpdates+gp 14-Jul-2004 shuffled SwissProt r30 shuffled in windows of 20 aa yeast S.cerevisiae translated genome ORFs NUCLEOTIDE SEQUENCE DATABASES embre * EMBL Data Library, Release 79, June 2004 embu * EmblUpdate 14-Jul-2004 embl * EMBL+EmblUpdate 14-Jul-2004 nr * Synonym to embl (and actually redundant). 14-Jul-2004 EST Database of Expressed Sequence Tags 14-Jul-2004 GSS Genome Survey Sequences 14-Jul-2004 HTG High-thruput Genomic Sequences 14-Jul-2004 STS Database of Sequence Tagged Sites 14-Jul-2004 repbase Repbase, August 04, 2002 simple Simple sequence repeats (J. Mol. Evol. 40:120, 1995) yeast S.cerevisiae genome worm C.elegans genome * The est, gss, htg, and sts divisions of EMBL are excluded from these databases. ============================================================================ The BLAST Network Service uses a server developed at SIB and the NCBI BLAST 2 software. For problems regarding this site, please contact one of the following persons: - problems with the programs: Christian Iseli (Christian.Iseli@licr.org) Giovanna Ambrosini (giovanna.ambrosini@isb-sib.ch) - problems with the databases: Victor Jongeneel (Victor.Jongeneel@isb-sib.ch) Laurent Falquet (Laurent.Falquet@isrec.unil.ch) ============================================================================ BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= consensus (55 letters) Database: /export/scratch/database/MYHITS2/ens.14 473,687 sequences; 222,839,780 total letters [blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file [blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ens:ENSANGP00000001970 >ENSANGP00000001970 pep:novel chromosome:... 78 2e-15 ens:ENSANGP00000028134 >ENSANGP00000028134 pep:novel chromosome:... 74 3e-14 ens:ENSANGP00000026139 >ENSANGP00000026139 pep:known chromosome:... 73 9e-14 ens:ENSANGP00000019818 >ENSANGP00000019818 pep:novel chromosome:... 68 2e-12 ens:ENSANGP00000026577 >ENSANGP00000026577 pep:novel chromosome:... 66 6e-12 ens:ENSANGP00000027323 >ENSANGP00000027323 pep:novel chromosome:... 61 3e-10 ens:ENSANGP00000018097 >ENSANGP00000018097 pep:novel chromosome:... 57 5e-09 ens:ENSANGP00000026169 >ENSANGP00000026169 pep:novel chromosome:... 56 1e-08 ens:ENSANGP00000023029 >ENSANGP00000023029 pep:novel chromosome:... 54 4e-08 ens:ENSANGP00000027917 >ENSANGP00000027917 pep:novel chromosome:... 34 0.031 ens:ENSANGP00000013352 >ENSANGP00000013352 pep:novel chromosome:... 32 0.12 ens:ENSXETP00000040899 >ENSXETP00000040899 pep:novel scaffold:JG... 32 0.21 ens:ENSCAFP00000001770 >ENSCAFP00000001770 pep:known chromosome:... 31 0.32 ens:ENSP00000335157 >ENSP00000335157 pep:known chromosome:NCBI35... 30 0.44 ens:ENSANGP00000023589 >ENSANGP00000023589 pep:novel chromosome:... 30 0.44 ens:ENSPTRP00000009537 >ENSPTRP00000009537 pep:novel chromosome:... 30 0.66 ens:ENSAPMP00000028111 >ENSAPMP00000028111 pep:novel group:AMEL2... 30 0.70 ens:SINFRUP00000157540 >SINFRUP00000157540 pep:novel scaffold:FU... 30 0.82 >ens:ENSANGP00000001970 >ENSANGP00000001970 pep:novel chromosome:MOZ2a:UNKN:54127569:54158929:-1 gene:ENSANGG00000001669 transcript:ENSANGT00000001970 . Length = 596 Score = 78.2 bits (253), Expect = 2e-15 Identities = 30/56 (53%), Positives = 36/56 (64%), Gaps = 1/56 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPS-PKRPVYWWTPEIAALRSECVAARRR 55 DRAT A L+E++TRACD +M RV PS RP YWWTP I L +EC A +R Sbjct: 65 EDRATHANSLIESLTRACDETMSRVFPSQDHTGRPAYWWTPVIEELVNECRIAEQR 120 >ens:ENSANGP00000028134 >ENSANGP00000028134 pep:novel chromosome:MOZ2a:2L:20228694:20229650:1 gene:ENSANGG00000022791 transcript:ENSANGT00000027995 . Length = 318 Score = 74.4 bits (240), Expect = 3e-14 Identities = 32/55 (58%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSP-SPKRPVYWWTPEIAALRSECVAARR 54 +R TSAE LVEA+TRACD +M RV PS RP YWWTPEIA L C A + Sbjct: 238 EERGTSAESLVEALTRACDETMSRVFPSQEYTGRPAYWWTPEIANLVEACREADQ 292 >ens:ENSANGP00000026139 >ENSANGP00000026139 pep:known chromosome:MOZ2a:UNKN:38348707:38352374:-1 gene:ENSANGG00000024890 transcript:ENSANGT00000028479 . Length = 1221 Score = 72.6 bits (234), Expect = 9e-14 Identities = 29/56 (51%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSP-KRPVYWWTPEIAALRSECVAARRR 55 +R TSAE L MT ACD +M RV PS P RP YWWTP I L C A+ R Sbjct: 256 AERVTSAESLERVMTEACDGAMARVFPSQGPSGRPAYWWTPAIEDLCENCRLAKER 311 >ens:ENSANGP00000019818 >ENSANGP00000019818 pep:novel chromosome:MOZ2a:UNKN:34460734:34462557:-1 gene:ENSANGG00000017329 transcript:ENSANGT00000019818 . Length = 303 Score = 67.9 bits (218), Expect = 2e-12 Identities = 29/55 (52%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 DRATSAEELVEAMTRACDASMPRVGPSPS-PKRPVYWWTPEIAALRSECVAARRR 55 +R TSAE L MT ACDA+M RV PS RP YWWTP I L C+ A+ R Sbjct: 186 ERVTSAESLERVMTEACDAAMARVFPSQGHSGRPAYWWTPAIEVLCENCLLAKER 240 >ens:ENSANGP00000026577 >ENSANGP00000026577 pep:novel chromosome:MOZ2a:UNKN:38780984:38781788:-1 gene:ENSANGG00000022721 transcript:ENSANGT00000025815 . Length = 267 Score = 66.4 bits (213), Expect = 6e-12 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPS--PSPKRPVYWWTPEIAALRSECVAARRR 55 A SA ++V A+T+A D +MPR P S ++PVYWW I R+ECVAARR+ Sbjct: 47 FGEAVSASQIVIALTKASDGAMPRRKPPNGTSRRQPVYWWNASIKIQRAECVAARRK 103 >ens:ENSANGP00000027323 >ENSANGP00000027323 pep:novel chromosome:MOZ2a:UNKN:55938997:55940162:1 gene:ENSANGG00000024034 transcript:ENSANGT00000025577 . Length = 388 Score = 60.9 bits (194), Expect = 3e-10 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPS-PKRPVYWWTPEIAALRSECVAARRR 55 + S E LVE++T CD +M RV P+ RP YWWTP I A+ + Sbjct: 217 ARQVNSVESLVESLTSVCDETMSRVFPTQDHTGRPAYWWTPAIQAMIDNLSRKEQM 272 >ens:ENSANGP00000018097 >ENSANGP00000018097 pep:novel chromosome:MOZ2a:UNKN:29959129:29994834:-1 gene:ENSANGG00000015608 transcript:ENSANGT00000018097 . Length = 629 Score = 56.8 bits (180), Expect = 5e-09 Identities = 26/54 (48%), Positives = 30/54 (55%) Query: 2 DRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 DR A L A+T+ACDA+M R+G S VYWWTP I L C AR R Sbjct: 410 DRIFDAASLGRALTQACDATMARIGHSQRKSCNVYWWTPAIGELTERCRLARER 463 >ens:ENSANGP00000026169 >ENSANGP00000026169 pep:novel chromosome:MOZ2a:UNKN:24824191:24824496:-1 gene:ENSANGG00000023436 transcript:ENSANGT00000029397 . Length = 100 Score = 55.6 bits (176), Expect = 1e-08 Identities = 22/45 (48%), Positives = 28/45 (62%) Query: 11 VEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 V A+ ACD S+ R P P++ YWWT EIA RS C+ ARR+ Sbjct: 1 VPAIANACDTSVLRRKGGPYPRQRAYWWTTEIAQCRSHCIEARRK 45 >ens:ENSANGP00000023029 >ENSANGP00000023029 pep:novel chromosome:MOZ2a:X:21768594:21773795:-1 gene:ENSANGG00000020647 transcript:ENSANGT00000024272 . Length = 700 Score = 54.1 bits (171), Expect = 4e-08 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 3 RATSAEELVEAMTRACDASMPRVGPSPS-PKRPVYWWTPEIAALRSECVAARRR 55 + S E LVE++T CD +M RV P RP YWWTP I A+ + Sbjct: 367 QVNSVESLVESLTSVCDETMSRVFPVQDHTGRPAYWWTPAIQAMIDNHSRKEQM 420 >ens:ENSANGP00000027917 >ENSANGP00000027917 pep:novel chromosome:MOZ2a:3R:41127850:41162590:1 gene:ENSANGG00000021837 transcript:ENSANGT00000025599 . Length = 422 Score = 34.2 bits (103), Expect = 0.031 Identities = 13/25 (52%), Positives = 14/25 (56%) Query: 30 SPKRPVYWWTPEIAALRSECVAARR 54 RP YWWTPEIA L C A + Sbjct: 326 YTGRPAYWWTPEIANLVEACREADQ 350 >ens:ENSANGP00000013352 >ENSANGP00000013352 pep:novel chromosome:MOZ2a:3L:37980600:37999296:1 gene:ENSANGG00000010863 transcript:ENSANGT00000013352 . Length = 1215 Score = 32.5 bits (97), Expect = 0.12 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 10 LVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIA-ALRSECVAARRR 55 + + A +S+PR P++ V WW E+A A+++ RRR Sbjct: 263 FANIILEAATSSIPRTNG-TLPRKYVPWWNKEVAIAIKNRRKHLRRR 308 >ens:ENSXETP00000040899 >ENSXETP00000040899 pep:novel scaffold:JGI3:scaffold_512:545392:582483:1 gene:ENSXETG00000018862 transcript:ENSXETT00000040899 . Length = 680 Score = 31.6 bits (94), Expect = 0.21 Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 1/50 (2%) Query: 6 SAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARRR 55 E L +T A P P W P+ +R C + R Sbjct: 247 DPELLTSILTSAIKTHAPLQPQRSRAHNPRPWLNPQ-TRFRRSCARSAER 295 >ens:ENSCAFP00000001770 >ENSCAFP00000001770 pep:known chromosome:BROADD1:12:6967958:7011860:1 gene:ENSCAFG00000001234 transcript:ENSCAFT00000001919 . Length = 1386 Score = 31.0 bits (92), Expect = 0.32 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 3/38 (7%) Query: 15 TRACDASMPRVGP---SPSPKRPVYWWTPEIAALRSEC 49 +A S PR P SPS R +W P LRS C Sbjct: 417 KKADSLSSPRKNPLERSPSQGRQAPFWPPAWNRLRSSC 454 >ens:ENSP00000335157 >ENSP00000335157 pep:known chromosome:NCBI35:12:122844866:122891664:1 gene:ENSG00000150980 transcript:ENST00000335003 . Length = 617 Score = 30.4 bits (90), Expect = 0.44 Identities = 12/43 (27%), Positives = 16/43 (37%) Query: 5 TSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRS 47 S E+LV AM A M + R W T + +R Sbjct: 91 DSGEKLVSAMISAEGEVMEFRKILRAEGRVEDWMTAVLNEMRR 133 >ens:ENSANGP00000023589 >ENSANGP00000023589 pep:novel chromosome:MOZ2a:3R:28848768:28852628:-1 gene:ENSANGG00000020203 transcript:ENSANGT00000023459 . Length = 956 Score = 30.4 bits (90), Expect = 0.44 Identities = 12/54 (22%), Positives = 19/54 (35%) Query: 1 PDRATSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRSECVAARR 54 D + V A T ++ P P P W + L+S+ A+R Sbjct: 279 IDADCDINQAVAAFTNVITSAFPSCCPLLKPAPNPKWSNRALRLLKSDKNRAQR 332 >ens:ENSPTRP00000009537 >ENSPTRP00000009537 pep:novel chromosome:CHIMP1:10:125901943:125948433:1 gene:ENSPTRG00000005610 transcript:ENSPTRT00000010306 . Length = 617 Score = 29.8 bits (88), Expect = 0.66 Identities = 12/43 (27%), Positives = 16/43 (37%) Query: 5 TSAEELVEAMTRACDASMPRVGPSPSPKRPVYWWTPEIAALRS 47 S E+LV AM A M + R W T + +R Sbjct: 91 DSGEKLVSAMISAEGEVMEFRKIVRAEGRVEDWMTAVLNEMRR 133 >ens:ENSAPMP00000028111 >ENSAPMP00000028111 pep:novel group:AMEL2.0:Group12:6145617:6153004:1 gene:ENSAPMG00000001793 transcript:ENSAPMT00000028108 . Length = 1561 Score = 29.8 bits (88), Expect = 0.70 Identities = 9/30 (30%), Positives = 15/30 (50%) Query: 9 ELVEAMTRACDASMPRVGPSPSPKRPVYWW 38 +LV+ ++ S R+ P +RP WW Sbjct: 50 DLVQHISDGVHVSALRINPPQLTERPAKWW 79 >ens:SINFRUP00000157540 >SINFRUP00000157540 pep:novel scaffold:FUGU2:scaffold_2124:29260:31699:-1 gene:SINFRUG00000148226 transcript:SINFRUT00000157540 . Length = 402 Score = 29.5 bits (87), Expect = 0.82 Identities = 10/34 (29%), Positives = 16/34 (47%) Query: 18 CDASMPRVGPSPSPKRPVYWWTPEIAALRSECVA 51 CD S R + + + VYW IA+ + +C Sbjct: 63 CDGSNQRGNHAGNQELRVYWHVVTIASCQKKCRE 96 Database: /export/scratch/database/MYHITS2/ens.14 Posted date: May 21, 2005 10:04 AM Number of letters in database: 222,839,780 Number of sequences in database: 473,687 Lambda K H 0.226 0.135 0.442 Lambda K H 0.203 0.0594 0.120 Matrix: BLOSUM45 Gap Penalties: Existence: 15, Extension: 2 Number of Hits to DB: 111,830,162 Number of Sequences: 473687 Number of extensions: 10863439 Number of successful extensions: 2873 Number of sequences better than 1.0: 18 Number of HSP's better than 1.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 2842 Number of HSP's gapped (non-prelim): 30 length of query: 55 length of database: 16,252,624 effective HSP length: 13 effective length of query: 42 effective length of database: 16,252,624 effective search space: 682610208 effective search space used: 682610208 T: 11 A: 40 X1: 23 ( 7.5 bits) X2: 51 (14.9 bits) X3: 85 (24.9 bits) S1: 58 (21.8 bits) S2: 87 (29.6 bits)