SIB BLAST network server version 1.6 of November 26, 2002 compiled by GNU C version 3.2.3 20030502 (Red Hat Linux 3.2.3-49) compiled on Feb 1 2005. Welcome to the SIB BLAST Network Service (noko01) ============================================================================== Swiss Institute of Bioinformatics (SIB) Ludwig Institute for Cancer Research (LICR) Swiss Institute for Experimental Cancer Research (ISREC) ============================================================================== If results of this search are reported or published, please mention that the computation was performed at the SIB using the BLAST network service. PEPTIDE SEQUENCE DATABASES swiss SwissProt + updates 14-Jul-2004 swisstrembl SwissProt+Trembl+TrUpdates 14-Jul-2004 nr Non-redundant SP+Trembl+TrUpdates+gp 14-Jul-2004 shuffled SwissProt r30 shuffled in windows of 20 aa yeast S.cerevisiae translated genome ORFs NUCLEOTIDE SEQUENCE DATABASES embre * EMBL Data Library, Release 79, June 2004 embu * EmblUpdate 14-Jul-2004 embl * EMBL+EmblUpdate 14-Jul-2004 nr * Synonym to embl (and actually redundant). 14-Jul-2004 EST Database of Expressed Sequence Tags 14-Jul-2004 GSS Genome Survey Sequences 14-Jul-2004 HTG High-thruput Genomic Sequences 14-Jul-2004 STS Database of Sequence Tagged Sites 14-Jul-2004 repbase Repbase, August 04, 2002 simple Simple sequence repeats (J. Mol. Evol. 40:120, 1995) yeast S.cerevisiae genome worm C.elegans genome * The est, gss, htg, and sts divisions of EMBL are excluded from these databases. ============================================================================ The BLAST Network Service uses a server developed at SIB and the NCBI BLAST 2 software. For problems regarding this site, please contact one of the following persons: - problems with the programs: Christian Iseli (Christian.Iseli@licr.org) Giovanna Ambrosini (giovanna.ambrosini@isb-sib.ch) - problems with the databases: Victor Jongeneel (Victor.Jongeneel@isb-sib.ch) Laurent Falquet (Laurent.Falquet@isrec.unil.ch) ============================================================================ BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= consensus (55 letters) Database: /export/scratch/database/MYHITS2/ens.14 473,687 sequences; 222,839,780 total letters [blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file [blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ens:ENSANGP00000001970 >ENSANGP00000001970 pep:novel chromosome:... 78 3e-15 ens:ENSANGP00000028134 >ENSANGP00000028134 pep:novel chromosome:... 73 6e-14 ens:ENSANGP00000026139 >ENSANGP00000026139 pep:known chromosome:... 72 1e-13 ens:ENSANGP00000019818 >ENSANGP00000019818 pep:novel chromosome:... 68 2e-12 ens:ENSANGP00000027323 >ENSANGP00000027323 pep:novel chromosome:... 62 2e-10 ens:ENSANGP00000018097 >ENSANGP00000018097 pep:novel chromosome:... 57 4e-09 ens:ENSANGP00000026577 >ENSANGP00000026577 pep:novel chromosome:... 57 4e-09 ens:ENSANGP00000023029 >ENSANGP00000023029 pep:novel chromosome:... 54 4e-08 ens:ENSANGP00000026169 >ENSANGP00000026169 pep:novel chromosome:... 54 5e-08 ens:ENSANGP00000013352 >ENSANGP00000013352 pep:novel chromosome:... 34 0.044 ens:ENSANGP00000027917 >ENSANGP00000027917 pep:novel chromosome:... 34 0.055 >ens:ENSANGP00000001970 >ENSANGP00000001970 pep:novel chromosome:MOZ2a:UNKN:54127569:54158929:-1 gene:ENSANGG00000001669 transcript:ENSANGT00000001970 . Length = 596 Score = 77.6 bits (251), Expect = 3e-15 Identities = 29/56 (51%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPY-PKRPVYWWTPEIAALRSACVAARRR 55 DRAT A L S+TRACD +M RV PS RP YWWTP I L + C A +R Sbjct: 65 EDRATHANSLIESLTRACDETMSRVFPSQDHTGRPAYWWTPVIEELVNECRIAEQR 120 >ens:ENSANGP00000028134 >ENSANGP00000028134 pep:novel chromosome:MOZ2a:2L:20228694:20229650:1 gene:ENSANGG00000022791 transcript:ENSANGT00000027995 . Length = 318 Score = 73.2 bits (236), Expect = 6e-14 Identities = 31/55 (56%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSP-YPKRPVYWWTPEIAALRSACVAARR 54 +R TSAE L ++TRACD +M RV PS Y RP YWWTPEIA L AC A + Sbjct: 238 EERGTSAESLVEALTRACDETMSRVFPSQEYTGRPAYWWTPEIANLVEACREADQ 292 >ens:ENSANGP00000026139 >ENSANGP00000026139 pep:known chromosome:MOZ2a:UNKN:38348707:38352374:-1 gene:ENSANGG00000024890 transcript:ENSANGT00000028479 . Length = 1221 Score = 72.3 bits (233), Expect = 1e-13 Identities = 29/56 (51%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPYP-KRPVYWWTPEIAALRSACVAARRR 55 +R TSAE L MT ACD +M RV PS P RP YWWTP I L C A+ R Sbjct: 256 AERVTSAESLERVMTEACDGAMARVFPSQGPSGRPAYWWTPAIEDLCENCRLAKER 311 >ens:ENSANGP00000019818 >ENSANGP00000019818 pep:novel chromosome:MOZ2a:UNKN:34460734:34462557:-1 gene:ENSANGG00000017329 transcript:ENSANGT00000019818 . Length = 303 Score = 67.9 bits (218), Expect = 2e-12 Identities = 29/55 (52%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 DRATSAEELRASMTRACDASMPRVGPSPY-PKRPVYWWTPEIAALRSACVAARRR 55 +R TSAE L MT ACDA+M RV PS RP YWWTP I L C+ A+ R Sbjct: 186 ERVTSAESLERVMTEACDAAMARVFPSQGHSGRPAYWWTPAIEVLCENCLLAKER 240 >ens:ENSANGP00000027323 >ENSANGP00000027323 pep:novel chromosome:MOZ2a:UNKN:55938997:55940162:1 gene:ENSANGG00000024034 transcript:ENSANGT00000025577 . Length = 388 Score = 61.8 bits (197), Expect = 2e-10 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPSPY-PKRPVYWWTPEIAALRSACVAARRR 55 + S E L S+T CD +M RV P+ RP YWWTP I A+ + Sbjct: 217 ARQVNSVESLVESLTSVCDETMSRVFPTQDHTGRPAYWWTPAIQAMIDNLSRKEQM 272 >ens:ENSANGP00000018097 >ENSANGP00000018097 pep:novel chromosome:MOZ2a:UNKN:29959129:29994834:-1 gene:ENSANGG00000015608 transcript:ENSANGT00000018097 . Length = 629 Score = 57.1 bits (181), Expect = 4e-09 Identities = 25/54 (46%), Positives = 30/54 (55%) Query: 2 DRATSAEELRASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 DR A L ++T+ACDA+M R+G S VYWWTP I L C AR R Sbjct: 410 DRIFDAASLGRALTQACDATMARIGHSQRKSCNVYWWTPAIGELTERCRLARER 463 >ens:ENSANGP00000026577 >ENSANGP00000026577 pep:novel chromosome:MOZ2a:UNKN:38780984:38781788:-1 gene:ENSANGG00000022721 transcript:ENSANGT00000025815 . Length = 267 Score = 57.1 bits (181), Expect = 4e-09 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 1 FDRATSAEELRASMTRACDASMPRVGPS--PYPKRPVYWWTPEIAALRSACVAARRR 55 F A SA ++ ++T+A D +MPR P ++PVYWW I R+ CVAARR+ Sbjct: 47 FGEAVSASQIVIALTKASDGAMPRRKPPNGTSRRQPVYWWNASIKIQRAECVAARRK 103 >ens:ENSANGP00000023029 >ENSANGP00000023029 pep:novel chromosome:MOZ2a:X:21768594:21773795:-1 gene:ENSANGG00000020647 transcript:ENSANGT00000024272 . Length = 700 Score = 54.1 bits (171), Expect = 4e-08 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 2 DRATSAEELRASMTRACDASMPRVGPSPY-PKRPVYWWTPEIAALRSACVAARRR 55 + S E L S+T CD +M RV P RP YWWTP I A+ + Sbjct: 366 RQVNSVESLVESLTSVCDETMSRVFPVQDHTGRPAYWWTPAIQAMIDNHSRKEQM 420 >ens:ENSANGP00000026169 >ENSANGP00000026169 pep:novel chromosome:MOZ2a:UNKN:24824191:24824496:-1 gene:ENSANGG00000023436 transcript:ENSANGT00000029397 . Length = 100 Score = 53.6 bits (169), Expect = 5e-08 Identities = 21/45 (46%), Positives = 28/45 (62%) Query: 11 RASMTRACDASMPRVGPSPYPKRPVYWWTPEIAALRSACVAARRR 55 ++ ACD S+ R PYP++ YWWT EIA RS C+ ARR+ Sbjct: 1 VPAIANACDTSVLRRKGGPYPRQRAYWWTTEIAQCRSHCIEARRK 45 >ens:ENSANGP00000013352 >ENSANGP00000013352 pep:novel chromosome:MOZ2a:3L:37980600:37999296:1 gene:ENSANGG00000010863 transcript:ENSANGT00000013352 . Length = 1215 Score = 33.9 bits (102), Expect = 0.044 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 10 LRASMTRACDASMPRVGPSPYPKRPVYWWTPEIA-ALRSACVAARRR 55 + + A +S+PR P++ V WW E+A A+++ RRR Sbjct: 263 FANIILEAATSSIPRTNG-TLPRKYVPWWNKEVAIAIKNRRKHLRRR 308 >ens:ENSANGP00000027917 >ENSANGP00000027917 pep:novel chromosome:MOZ2a:3R:41127850:41162590:1 gene:ENSANGG00000021837 transcript:ENSANGT00000025599 . Length = 422 Score = 33.6 bits (101), Expect = 0.055 Identities = 15/25 (60%), Positives = 16/25 (64%) Query: 30 YPKRPVYWWTPEIAALRSACVAARR 54 Y RP YWWTPEIA L AC A + Sbjct: 326 YTGRPAYWWTPEIANLVEACREADQ 350 Database: /export/scratch/database/MYHITS2/ens.14 Posted date: May 21, 2005 10:04 AM Number of letters in database: 222,839,780 Number of sequences in database: 473,687 Lambda K H 0.227 0.135 0.440 Lambda K H 0.203 0.0599 0.120 Matrix: BLOSUM45 Gap Penalties: Existence: 15, Extension: 2 Number of Hits to DB: 112,436,107 Number of Sequences: 473687 Number of extensions: 10982176 Number of successful extensions: 2622 Number of sequences better than 1.0: 11 Number of HSP's better than 1.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 2603 Number of HSP's gapped (non-prelim): 15 length of query: 55 length of database: 16,252,624 effective HSP length: 13 effective length of query: 42 effective length of database: 16,252,624 effective search space: 682610208 effective search space used: 682610208 T: 11 A: 40 X1: 23 ( 7.5 bits) X2: 51 (14.9 bits) X3: 85 (24.9 bits) S1: 58 (21.9 bits) S2: 87 (29.5 bits)